Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 244 of 250
Found at i:75674871 original size:26 final size:26
Alignment explanation
Indices: 75674830--75674880 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
75674820 TAATAACGGA
*
75674830 TTGCTCTATTCGTATTATTTTGTTAC
1 TTGCTCTATTCGTATTATTATGTTAC
**
75674856 TTGCTCTATTTTTATTATTATGTTA
1 TTGCTCTATTCGTATTATTATGTTA
75674881 TTATTTTGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.18, C:0.12, G:0.10, T:0.61
Consensus pattern (26 bp):
TTGCTCTATTCGTATTATTATGTTAC
Found at i:75676617 original size:16 final size:16
Alignment explanation
Indices: 75676596--75676631 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
75676586 TGTATCAACA
75676596 CAACTCAAACCCGACC
1 CAACTCAAACCCGACC
*
75676612 CAACTCGAACCCGACC
1 CAACTCAAACCCGACC
75676628 CAAC
1 CAAC
75676632 CCATTATCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.36, C:0.50, G:0.08, T:0.06
Consensus pattern (16 bp):
CAACTCAAACCCGACC
Found at i:75676837 original size:22 final size:23
Alignment explanation
Indices: 75676812--75676854 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
75676802 TTGAGATGTT
75676812 TAAAAATAAATAATA-ATATAGA
1 TAAAAATAAATAATATATATAGA
*
75676834 TAAAAATATATAATATATATA
1 TAAAAATAAATAATATATATA
75676855 CAAATAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (23 bp):
TAAAAATAAATAATATATATAGA
Found at i:75676848 original size:19 final size:18
Alignment explanation
Indices: 75676819--75676861 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
75676809 GTTTAAAAAT
75676819 AAATAATAATATAGATAA
1 AAATAATAATATAGATAA
* *
75676837 AAATATATAATATATATAC
1 AAATA-ATAATATAGATAA
75676856 AAATAA
1 AAATAA
75676862 AAAGATATCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (18 bp):
AAATAATAATATAGATAA
Found at i:75676861 original size:25 final size:22
Alignment explanation
Indices: 75676812--75676869 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 22
75676802 TTGAGATGTT
* *
75676812 TAAAAATAAATAATAATATAGA
1 TAAAAATATATAATAATATAAA
75676834 TAAAAATATATAATATATATACAAA
1 TAAAAATATATAATA-ATAT--AAA
*
75676859 TAAAAAGATAT
1 TAAAAATATAT
75676870 CCATCGACAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
22 14 0.47
23 4 0.13
25 12 0.40
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (22 bp):
TAAAAATATATAATAATATAAA
Found at i:75677742 original size:15 final size:16
Alignment explanation
Indices: 75677712--75677750 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
75677702 TAATAAAAAT
75677712 ATAATTTTATTATTTTA
1 ATAA-TTTATTATTTTA
*
75677729 ATAATTTA-TATTTTT
1 ATAATTTATTATTTTA
75677744 ATAATTT
1 ATAATTT
75677751 TTAAAAGGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 13 0.62
16 4 0.19
17 4 0.19
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
ATAATTTATTATTTTA
Found at i:75678109 original size:17 final size:18
Alignment explanation
Indices: 75678081--75678123 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
75678071 GAATTATATA
**
75678081 TTAATATATTTTTTATTT
1 TTAATATATTTTAAATTT
75678099 TTAAT-TATTTTAAATTT
1 TTAATATATTTTAAATTT
75678116 TTAATATA
1 TTAATATA
75678124 ACTATTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TTAATATATTTTAAATTT
Found at i:75678206 original size:22 final size:22
Alignment explanation
Indices: 75678167--75678225 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
75678157 GTTTTAAGAA
*
75678167 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
75678188 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
75678210 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
75678226 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:75678245 original size:26 final size:24
Alignment explanation
Indices: 75678196--75678255 Score: 66
Period size: 26 Copynumber: 2.4 Consensus size: 24
75678186 ATTTGTTTTA
* *
75678196 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTAAAAT
75678220 ATATTTGATTTATTATATTTTAAAAT
1 ATATTT-ATTT-TTATATTTTAAAAT
* *
75678246 TTTTTTATTT
1 ATATTTATTT
75678256 AATGAAATAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 6 0.20
25 8 0.27
26 16 0.53
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTAAAAT
Found at i:75678255 original size:25 final size:26
Alignment explanation
Indices: 75678199--75678256 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 26
75678189 TGTTTTAATA
* *
75678199 TTTATTT-TTATGTTTTTAAATATAT
1 TTTATTTATTATATTTTAAAATATAT
* *
75678224 TTGATTTATTATATTTTAAAAT-TTT
1 TTTATTTATTATATTTTAAAATATAT
75678249 TTTATTTA
1 TTTATTTA
75678257 ATGAAATAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
25 15 0.56
26 12 0.44
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.67
Consensus pattern (26 bp):
TTTATTTATTATATTTTAAAATATAT
Found at i:75686651 original size:16 final size:17
Alignment explanation
Indices: 75686615--75686655 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
75686605 AAATTTAAAG
*
75686615 TTTTAATATTTATTTTA
1 TTTTAATATTTATTATA
75686632 TTTTAATATTTA-TATA
1 TTTTAATATTTATTATA
75686648 TTTTAATA
1 TTTTAATA
75686656 AAAGATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 11 0.48
17 12 0.52
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTTAATATTTATTATA
Found at i:75688317 original size:14 final size:14
Alignment explanation
Indices: 75688298--75688340 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 14
75688288 AATTTTAAGT
75688298 AAATAATAATTTAA
1 AAATAATAATTTAA
*
75688312 AAATAATTAATATAA
1 AAATAA-TAATTTAA
75688327 AAA-AA-AATTTAA
1 AAATAATAATTTAA
75688339 AA
1 AA
75688341 TAAAATATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
12 8 0.31
14 8 0.31
15 10 0.38
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
AAATAATAATTTAA
Found at i:75688327 original size:15 final size:14
Alignment explanation
Indices: 75688298--75688356 Score: 50
Period size: 15 Copynumber: 4.1 Consensus size: 14
75688288 AATTTTAAGT
*
75688298 AAATAATAATTTAA
1 AAATAATAATATAA
75688312 AAATAATTAATATAA
1 AAATAA-TAATATAA
*
75688327 AAA-AA-AATTTAA
1 AAATAATAATATAA
*
75688339 AATAAAATATATATAA
1 AA-ATAATA-ATATAA
75688355 AA
1 AA
75688357 CAATCTAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
12 8 0.22
13 1 0.03
14 10 0.27
15 11 0.30
16 7 0.19
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
AAATAATAATATAA
Found at i:75688492 original size:26 final size:25
Alignment explanation
Indices: 75688463--75688520 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 25
75688453 ATAAAACAGT
*
75688463 TTTAAA-AAATAATACTGTAAAAGAAA
1 TTTAAAGAAATAACA-TGTAAAA-AAA
*
75688489 TTTAAAGTAAATAACATGTAAAATAA
1 TTTAAAG-AAATAACATGTAAAAAAA
75688515 TTTAAA
1 TTTAAA
75688521 CCAAGTAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 14 0.50
27 7 0.25
28 7 0.25
ACGTcount: A:0.59, C:0.03, G:0.07, T:0.31
Consensus pattern (25 bp):
TTTAAAGAAATAACATGTAAAAAAA
Found at i:75688593 original size:26 final size:26
Alignment explanation
Indices: 75688469--75688616 Score: 89
Period size: 26 Copynumber: 5.3 Consensus size: 26
75688459 CAGTTTTAAA
*
75688469 AAATAATACTGTAAAAGAAATTTAAAGT
1 AAATAATA-TGTAAAA-AAATTTAAAAT
* * **
75688497 AAATAACATGTAAAATAATTTAAACC
1 AAATAATATGTAAAAAAATTTAAAAT
* ** * *
75688523 AAGTAATACATATAAAACTTTAAAAT
1 AAATAATATGTAAAAAAATTTAAAAT
* * *
75688549 AAATCATACATGAAGAAAAAAAATTAAAAT
1 AAAT-A-ATATG--TAAAAAAATTTAAAAT
75688579 AAATAATATGTAAAAATAATTTTAAAAAT
1 AAATAATATGTAAAAA-AA-TTT-AAAAT
*
75688608 ATATAATAT
1 AAATAATAT
75688617 ATAAGAAGTA
Statistics
Matches: 88, Mismatches: 25, Indels: 13
0.70 0.20 0.10
Matches are distributed among these distances:
26 33 0.38
27 10 0.11
28 15 0.17
29 14 0.16
30 16 0.18
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.29
Consensus pattern (26 bp):
AAATAATATGTAAAAAAATTTAAAAT
Found at i:75689260 original size:18 final size:17
Alignment explanation
Indices: 75689211--75689268 Score: 57
Period size: 18 Copynumber: 3.4 Consensus size: 17
75689201 ATAATGAAAG
*
75689211 ATAATGATAAAATAATA
1 ATAATGCTAAAATAATA
*
75689228 ATAA-ACTAAGGAATAATA
1 ATAATGCTAA--AATAATA
75689246 ATAATGCTAACAATAAT-
1 ATAATGCTAA-AATAATA
75689263 ATAATG
1 ATAATG
75689269 TAAGTAATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
16 3 0.09
17 10 0.29
18 17 0.50
19 4 0.12
ACGTcount: A:0.59, C:0.05, G:0.09, T:0.28
Consensus pattern (17 bp):
ATAATGCTAAAATAATA
Found at i:75693080 original size:17 final size:17
Alignment explanation
Indices: 75693055--75693087 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
75693045 TACTTTTACT
*
75693055 AATTTAAAATTTAAAAA
1 AATTAAAAATTTAAAAA
75693072 AATTAAAAATTTAAAA
1 AATTAAAAATTTAAAA
75693088 TAAAAAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
AATTAAAAATTTAAAAA
Found at i:75694207 original size:18 final size:21
Alignment explanation
Indices: 75694166--75694208 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 21
75694156 CCTTAAAATG
*
75694166 TAAAATTGTTATTTAAATTCT
1 TAAAATTGTTATTAAAATTCT
75694187 TAAAATT-TT-TTAAAATT-T
1 TAAAATTGTTATTAAAATTCT
75694205 TAAA
1 TAAA
75694209 TTAATAAAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 5 0.24
19 7 0.33
20 2 0.10
21 7 0.33
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (21 bp):
TAAAATTGTTATTAAAATTCT
Found at i:75701364 original size:6 final size:6
Alignment explanation
Indices: 75701353--75701377 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
75701343 GATCAGTTGA
75701353 AGGTGC AGGTGC AGGTGC AGGTGC A
1 AGGTGC AGGTGC AGGTGC AGGTGC A
75701378 TATATATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.20, C:0.16, G:0.48, T:0.16
Consensus pattern (6 bp):
AGGTGC
Found at i:75704094 original size:27 final size:26
Alignment explanation
Indices: 75704053--75704181 Score: 97
Period size: 27 Copynumber: 5.0 Consensus size: 26
75704043 AAAGTAAACA
*
75704053 ATAAAACAGTTTAAAATGAATAATAC
1 ATAAAACAGTTTAAAATAAATAATAC
**
75704079 ATAAAACAAGTTTAAAATAAATAATGT
1 ATAAAAC-AGTTTAAAATAAATAATAC
* * * *
75704106 ATAAAGCATTTTAAAGT-AA-AAGAC
1 ATAAAACAGTTTAAAATAAATAATAC
**
75704130 ATAAAA-AACTTAAAATAAATAATAC
1 ATAAAACAGTTTAAAATAAATAATAC
**
75704155 -TAAAGA-AGCCTAAAATAAATAAATAC
1 ATAAA-ACAGTTTAAAATAAAT-AATAC
75704181 A
1 A
75704182 AAAGAAATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
23 7 0.09
24 13 0.16
25 19 0.23
26 20 0.25
27 22 0.27
ACGTcount: A:0.60, C:0.08, G:0.07, T:0.25
Consensus pattern (26 bp):
ATAAAACAGTTTAAAATAAATAATAC
Found at i:75704119 original size:53 final size:49
Alignment explanation
Indices: 75704053--75704152 Score: 119
Period size: 49 Copynumber: 2.0 Consensus size: 49
75704043 AAAGTAAACA
* *
75704053 ATAAAACAGTTTAAAATGAATAATACATAAAACAAGTTTAAAATAAATAATGT
1 ATAAAACAGTTTAAAAT-AA-AAGACATAAAA-AA-CTTAAAATAAATAATGT
* * *
75704106 ATAAAGCATTTTAAAGTAAAAGACATAAAAAACTTAAAATAAATAAT
1 ATAAAACAGTTTAAAATAAAAGACATAAAAAACTTAAAATAAATAAT
75704153 ACTAAAGAAG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
49 14 0.33
50 2 0.05
51 10 0.24
52 2 0.05
53 14 0.33
ACGTcount: A:0.60, C:0.06, G:0.07, T:0.27
Consensus pattern (49 bp):
ATAAAACAGTTTAAAATAAAAGACATAAAAAACTTAAAATAAATAATGT
Found at i:75704194 original size:26 final size:25
Alignment explanation
Indices: 75704135--75704194 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 25
75704125 AAGACATAAA
*
75704135 AAACTTAAAATAAATAATACTAAAG
1 AAACTTAAAATAAATAATACAAAAG
* *
75704160 AAGCCTAAAATAAATAAATACAAAAG
1 AAACTTAAAATAAAT-AATACAAAAG
*
75704186 AAATTTAAA
1 AAACTTAAA
75704195 GCTGAATAAC
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
25 13 0.46
26 15 0.54
ACGTcount: A:0.65, C:0.08, G:0.05, T:0.22
Consensus pattern (25 bp):
AAACTTAAAATAAATAATACAAAAG
Found at i:75706947 original size:17 final size:16
Alignment explanation
Indices: 75706921--75706961 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
75706911 ATATCGTACA
*
75706921 TATTTTTATTACATTT
1 TATTTTTATTACATGT
*
75706937 TATTATTTATTATATGT
1 TATT-TTTATTACATGT
75706954 TATTTTTA
1 TATTTTTA
75706962 AATATGAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 8 0.36
17 14 0.64
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.68
Consensus pattern (16 bp):
TATTTTTATTACATGT
Found at i:75711101 original size:21 final size:20
Alignment explanation
Indices: 75711052--75711101 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
75711042 AAATCTAAAT
75711052 TAAAATACTAAAAGTCAGGA
1 TAAAATACTAAAAGTCAGGA
* *
75711072 TAAAATACTAAAATTTAGGA
1 TAAAATACTAAAAGTCAGGA
75711092 TAAGAATACT
1 TAA-AATACT
75711102 GATGTGGCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 21 0.78
21 6 0.22
ACGTcount: A:0.54, C:0.08, G:0.12, T:0.26
Consensus pattern (20 bp):
TAAAATACTAAAAGTCAGGA
Found at i:75712719 original size:20 final size:18
Alignment explanation
Indices: 75712676--75712712 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
75712666 TAAACCTGTC
*
75712676 TATATTATGTTTTAAATA
1 TATATTATGTTTTAAAAA
*
75712694 TATATTATTTTTTAAAAA
1 TATATTATGTTTTAAAAA
75712712 T
1 T
75712713 TAATATTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.57
Consensus pattern (18 bp):
TATATTATGTTTTAAAAA
Found at i:75724085 original size:22 final size:22
Alignment explanation
Indices: 75724034--75724094 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
75724024 ATAAGTAAAT
* *
75724034 ACAAAAATAA-AGGAAAATATA
1 ACAAAAATAATAGAAAAATACA
* *
75724055 ATAACAATAATAGAAAAATACA
1 ACAAAAATAATAGAAAAATACA
* *
75724077 ACAATAATAATAGTAAAA
1 ACAAAAATAATAGAAAAA
75724095 GATATAATAA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.69, C:0.07, G:0.07, T:0.18
Consensus pattern (22 bp):
ACAAAAATAATAGAAAAATACA
Found at i:75724194 original size:3 final size:3
Alignment explanation
Indices: 75724186--75724363 Score: 51
Period size: 3 Copynumber: 58.7 Consensus size: 3
75724176 AAAGTAGTGC
* * * *
75724186 TAA TAA TAA TAA TAA TAA T-C TAT TAA GTTA TAA TGAA -AA TAA TGA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA T-AA TAA TAA TAA
* * * * *
75724231 TAA TGA TGA T-A TAT TAGA TAA TAA TAG TAA -AA TAA TAA GTAA CAA
1 TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA -TAA TAA
* * * * * * * *
75724276 TGA TAAA TTA TAA TAA TAG TGA TGA GAA TAA TAA GTGA TGA TAA TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA
* * * * * *
75724323 CAA TAA CAA TAG TAG TAA TAA T-A TAT TAG TAA TACA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TA
75724364 GAGTAGTAAA
Statistics
Matches: 128, Mismatches: 35, Indels: 24
0.68 0.19 0.13
Matches are distributed among these distances:
2 9 0.07
3 103 0.80
4 16 0.12
ACGTcount: A:0.54, C:0.03, G:0.11, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:75724314 original size:16 final size:15
Alignment explanation
Indices: 75724287--75724322 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
75724277 GATAAATTAT
75724287 AATAATAGTGATGAG
1 AATAATAGTGATGAG
*
75724302 AATAATAAGTGATGAT
1 AATAAT-AGTGATGAG
75724318 AATAA
1 AATAA
75724323 CAATAACAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.53, C:0.00, G:0.19, T:0.28
Consensus pattern (15 bp):
AATAATAGTGATGAG
Found at i:75725242 original size:24 final size:26
Alignment explanation
Indices: 75725181--75725249 Score: 88
Period size: 27 Copynumber: 2.7 Consensus size: 26
75725171 ATCTCAAAAA
* *
75725181 AAAAGAAAAATCCCCTCTTGAATCTCC
1 AAAA-AAAAATCTCTTCTTGAATCTCC
75725208 AAAAAAAAAATCTCTTCTTGAATCT-C
1 -AAAAAAAAATCTCTTCTTGAATCTCC
75725234 -AAAAAAAATCTCTTCT
1 AAAAAAAAATCTCTTCT
75725250 CTCCAAAATA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
24 16 0.41
26 1 0.03
27 18 0.46
28 4 0.10
ACGTcount: A:0.45, C:0.23, G:0.04, T:0.28
Consensus pattern (26 bp):
AAAAAAAAATCTCTTCTTGAATCTCC
Found at i:75725741 original size:16 final size:17
Alignment explanation
Indices: 75725704--75725741 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
75725694 TGACTTGAAT
75725704 TAAA-CCCAAATAACCC
1 TAAACCCCAAATAACCC
*
75725720 TGAACCCCAAATAACCC
1 TAAACCCCAAATAACCC
75725737 -AAACC
1 TAAACC
75725742 GAAAATAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.47, C:0.39, G:0.03, T:0.11
Consensus pattern (17 bp):
TAAACCCCAAATAACCC
Found at i:75734829 original size:48 final size:48
Alignment explanation
Indices: 75734719--75734998 Score: 278
Period size: 48 Copynumber: 5.8 Consensus size: 48
75734709 TGAGATTCAA
* * * *
75734719 TGTAAGTCCATGTCTGGGGCATGGCATCGGC-ATCCGAGA-AGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACGAT--GATATA-TGTGCCAG
* * * * * * *
75734768 TGAAAGACCATGTCTAGGATATAGTATCGGCGATGATATATGTGCCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCAG
* * *
75734816 TGTAAGACTATGTCTGGGACATGGCATCGATGATGATATATGTGCCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCAG
* * *
75734864 TGTAAGACCATGTCTGGGACATGGCATCAACAATAATATATGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCAG
* ** *
75734912 TGTAAGACCATGTCTGGGACATGGAATCGGTGATTATATATGTGCC-G
1 TGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCAG
* * * *
75734959 TTATAAGACCATGTTTGGGACATGGCATTGGCGATGATAT
1 -TGTAAGACCATGTCTGGGACATGGCATCGACGATGATAT
75734999 TTGGATTCAT
Statistics
Matches: 193, Mismatches: 35, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
47 1 0.01
48 165 0.85
49 25 0.13
50 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCAG
Found at i:75735012 original size:144 final size:144
Alignment explanation
Indices: 75734760--75735034 Score: 338
Period size: 144 Copynumber: 1.9 Consensus size: 144
75734750 ATCCGAGAAG
* * * *
75734760 TGTGCCAGTGAAAGACCATGTCTAGGATATAGTATCGGCGATGATATATGTGCCTGTGTAAGACT
1 TGTGCCAGTGAAAGACCATGTCTAGGACATAGAATCGGCGATGATATATGTGCCTGTATAAGACC
* * * * **
75734825 ATGTCTGGGACATGGCATCGATGATGATATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCA
66 ATGTCTGGGACATGGCATCGACGATGATATATGTGACTATGTAAAACCATGTCTAAGACATGGCA
75734890 TCAACAATAATATA
131 TCAACAATAATATA
* * * * *
75734904 TGTGCCAGTGTAAGACCATGTCTGGGACATGGAATCGGTGATTATATATGTGCC-GTTATAAGAC
1 TGTGCCAGTGAAAGACCATGTCTAGGACATAGAATCGGCGATGATATATGTGCCTG-TATAAGAC
* * * * *
75734968 CATGTTTGGGACATGGCATTGGCGATGATATTTG-GATTCATGTAAAACCATGTCTAAGACATGG
65 CATGTCTGGGACATGGCATCGACGATGATATATGTGACT-ATGTAAAACCATGTCTAAGACATGG
75735032 CAT
129 CAT
75735035 TGATACTTTG
Statistics
Matches: 109, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
143 3 0.03
144 106 0.97
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (144 bp):
TGTGCCAGTGAAAGACCATGTCTAGGACATAGAATCGGCGATGATATATGTGCCTGTATAAGACC
ATGTCTGGGACATGGCATCGACGATGATATATGTGACTATGTAAAACCATGTCTAAGACATGGCA
TCAACAATAATATA
Found at i:75736965 original size:41 final size:41
Alignment explanation
Indices: 75736914--75737193 Score: 390
Period size: 41 Copynumber: 6.8 Consensus size: 41
75736904 GAATGTAATA
*
75736914 CAGACGTTAAGTCTAGCAGGCTTAATGCCGGTGAAGTA-A-TT
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG-A-TACATTT
75736955 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
75736996 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
75737037 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
* *
75737078 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
* * *
75737119 CAGACTATATGTCTAGCAGGC-TAAGTGCCGGTG-TAC-TGAAT
1 CAGACTTTAAGTCTAGCAGGCTTAA-TGCCGGTGATACAT--TT
* * **
75737160 CAGGCTTTAAGCCTAGCAGGCAAAATGCCGGTGA
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
75737194 ATCTGTTTAA
Statistics
Matches: 223, Mismatches: 9, Indels: 13
0.91 0.04 0.05
Matches are distributed among these distances:
39 3 0.01
40 8 0.04
41 210 0.94
42 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.29
Consensus pattern (41 bp):
CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
Found at i:75746703 original size:45 final size:41
Alignment explanation
Indices: 75746644--75746753 Score: 107
Period size: 45 Copynumber: 2.6 Consensus size: 41
75746634 TTTGGTTCGC
* *
75746644 TGTATTGGATTAGAGGTGTAATAGCAAATCAACTGTTTGGTT
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGG-T
* * ***
75746686 GAATGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGT
1 ---TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
75746729 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
75746754 TAATGAAAAA
Statistics
Matches: 55, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
39 20 0.36
40 2 0.04
43 1 0.02
44 11 0.20
45 21 0.38
ACGTcount: A:0.32, C:0.05, G:0.29, T:0.34
Consensus pattern (41 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
Found at i:75746913 original size:15 final size:15
Alignment explanation
Indices: 75746889--75746930 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
75746879 TTTAAACATA
*
75746889 ATTATTATTAAATAT
1 ATTATAATTAAATAT
75746904 ATTATAATTAAAT-T
1 ATTATAATTAAATAT
*
75746918 A-TATAATTTAATA
1 ATTATAATTAAATA
75746931 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 10 0.42
14 2 0.08
15 12 0.50
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:75747019 original size:105 final size:105
Alignment explanation
Indices: 75746896--75747260 Score: 459
Period size: 105 Copynumber: 3.4 Consensus size: 105
75746886 ATAATTATTA
*
75746896 TTAA-ATATATTATAATTAAATTATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATG
1 TTAACATA-ATTATTATTAAATTATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATG
75746960 AATTTACTCAAATCATAATATATGATACTATAAAATATAAT
65 AATTTACTCAAATCATAATATATGATACTATAAAATATAAT
*
75747001 TTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAATATTATTAATAATC
1 TTAACATAATTATTATT--A-A-ATTAT-A-T--AAT-T-TAA--T-A-AA-ATTCTTAATAATC
75747066 AATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAT
51 AATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAT
* * * *
75747121 TTAACATAATTATTATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGA
1 TTAACATAATTATTATTAAATTATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGA
* * * *
75747186 ATTTAATAAAATCATAATATATAATACTATATAATATAAT
66 ATTTACTCAAATCATAATATATGATACTATAAAATATAAT
*
75747226 TTAAAATAATTATTATT-AA--ATATAATTTAATAAAA
1 TTAACATAATTATTATTAAATTATATAATTTAATAAAA
75747261 ATATATAATT
Statistics
Matches: 231, Mismatches: 13, Indels: 35
0.83 0.05 0.13
Matches are distributed among these distances:
102 16 0.07
104 2 0.01
105 88 0.38
106 5 0.02
107 2 0.01
108 2 0.01
109 5 0.02
110 4 0.02
111 2 0.01
112 3 0.01
113 3 0.01
114 2 0.01
115 4 0.02
116 4 0.02
117 2 0.01
118 2 0.01
119 2 0.01
120 83 0.36
ACGTcount: A:0.50, C:0.05, G:0.01, T:0.43
Consensus pattern (105 bp):
TTAACATAATTATTATTAAATTATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGA
ATTTACTCAAATCATAATATATGATACTATAAAATATAAT
Found at i:75747019 original size:120 final size:120
Alignment explanation
Indices: 75746878--75747299 Score: 563
Period size: 120 Copynumber: 3.6 Consensus size: 120
75746868 ATTTAATCAT
* *
75746878 ATTTAAACATAATTATTATTAAATATATTATAATTAAATTATATAATTTAATAAAATTCTTAATA
1 ATTT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTATTAATA
75746943 ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
65 ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
*
75746999 ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAATATTATTAATAA
1 ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTATTAATAA
75747064 TCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
66 TCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
* *
75747119 ATTTAACAT-A--ATTATT--ATA-A--A-AA-T---ATA--TAATTTAATAAAATTCTTAATAT
1 ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTATTAATAA
* * * * *
75747169 TAAATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATATAATATA
66 TCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
* * * * *
75747224 ATTTAAAATAATTATTATTAAATATAATT-TAATAAAAATATATAATTTAACATAATTATTATTA
1 ATTTAACATAATTATTATTAAATAT-ATTATAATTAAAATATATAATTTAATAAAATTATTAATA
*
75747288 AT-AAAATTCTTA
65 ATCAATATTCTTA
75747300 ACTTAATCAA
Statistics
Matches: 266, Mismatches: 19, Indels: 34
0.83 0.06 0.11
Matches are distributed among these distances:
105 78 0.29
106 1 0.00
107 3 0.01
108 6 0.02
110 4 0.02
111 2 0.01
112 2 0.01
114 3 0.01
115 3 0.01
117 6 0.02
118 3 0.01
119 10 0.04
120 141 0.53
121 4 0.02
ACGTcount: A:0.50, C:0.05, G:0.01, T:0.43
Consensus pattern (120 bp):
ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTATTAATAA
TCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
Found at i:75747027 original size:15 final size:15
Alignment explanation
Indices: 75746995--75747057 Score: 60
Period size: 15 Copynumber: 4.2 Consensus size: 15
75746985 TACTATAAAA
75746995 TATAATTTAACATA-AT
1 TATAA-TTAA-ATATAT
*
75747011 TATTATTAAATATAT
1 TATAATTAAATATAT
75747026 TATAATTAAA-ATA-
1 TATAATTAAATATAT
*
75747039 TATAATTTAATAATAT
1 TATAATTAAAT-ATAT
75747055 TAT
1 TAT
75747058 TAATAATCAA
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
13 9 0.22
14 6 0.15
15 18 0.45
16 7 0.17
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (15 bp):
TATAATTAAATATAT
Found at i:75747039 original size:16 final size:16
Alignment explanation
Indices: 75746995--75747041 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
75746985 TACTATAAAA
*
75746995 TATAATTTAACATA-AT
1 TATAA-TTAAAATATAT
*
75747011 TATTATT-AAATATAT
1 TATAATTAAAATATAT
75747026 TATAATTAAAATATAT
1 TATAATTAAAATATAT
75747042 AATTTAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 4 0.15
15 10 0.38
16 12 0.46
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
TATAATTAAAATATAT
Found at i:75747227 original size:38 final size:36
Alignment explanation
Indices: 75747038--75747229 Score: 105
Period size: 38 Copynumber: 5.3 Consensus size: 36
75747028 TAATTAAAAT
* * * * *
75747038 ATATAATTTAATAATATTATTAATA-ATCAATATTCTT
1 ATATAATTTAATAAAATCA-TAATATATAAATA-TATA
* * * *
75747075 ATATGAATTTACTCAAATCATAATATATGATACTATAAA
1 ATAT-AATTTAATAAAATCATAATATAT-A-AATATATA
* *
75747114 ATATAATTTAACATAAT--T-AT-TATAAA-A-AT-
1 ATATAATTTAATAAAATCATAATATATAAATATATA
* * *
75747143 ATATAATTTAATAAAATTCTTAATAT-TAAATATTCTT
1 ATATAATTTAATAAAA-TCATAATATATAAATA-TATA
75747180 ATATGAATTTAATAAAATCATAATATATAATACTATATA
1 ATAT-AATTTAATAAAATCATAATATATAA-A-TATATA
75747219 ATATAATTTAA
1 ATATAATTTAA
75747230 AATAATTATT
Statistics
Matches: 117, Mismatches: 21, Indels: 33
0.68 0.12 0.19
Matches are distributed among these distances:
29 14 0.12
30 2 0.02
31 1 0.01
32 2 0.02
33 7 0.06
34 5 0.04
35 2 0.02
36 2 0.02
37 21 0.18
38 44 0.38
39 12 0.10
40 5 0.04
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.43
Consensus pattern (36 bp):
ATATAATTTAATAAAATCATAATATATAAATATATA
Found at i:75748205 original size:21 final size:22
Alignment explanation
Indices: 75748172--75748227 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 22
75748162 AAAATATTAA
* *
75748172 ATTATATAAATTTTATATTTA-T
1 ATTA-ATATATTTTATAATTAGT
75748194 ATTAATATATTTTTATAATTAGT
1 ATTAATATA-TTTTATAATTAGT
75748217 -TTAA-ATATTTT
1 ATTAATATATTTT
75748228 TTTAAACATA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
20 4 0.13
21 7 0.23
22 18 0.60
23 1 0.03
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (22 bp):
ATTAATATATTTTATAATTAGT
Found at i:75748228 original size:21 final size:22
Alignment explanation
Indices: 75748182--75748228 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
75748172 ATTATATAAA
*
75748182 TTTTATATTTATATTAATATAT
1 TTTTATAATTATATTAATATAT
75748204 TTTTATAATTAGT-TTAA-ATAT
1 TTTTATAATTA-TATTAATATAT
75748225 TTTT
1 TTTT
75748229 TTAAACATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 8 0.35
22 14 0.61
23 1 0.04
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (22 bp):
TTTTATAATTATATTAATATAT
Found at i:75748655 original size:28 final size:30
Alignment explanation
Indices: 75748611--75748671 Score: 92
Period size: 28 Copynumber: 2.1 Consensus size: 30
75748601 AAGTCGTTAA
75748611 TTTAAAATTTAATCTCTTT-A-TTTTTATT
1 TTTAAAATTTAATCTCTTTCATTTTTTATT
75748639 TTTAAGAATTTAA-CTCTTTCATTTTTTATT
1 TTTAA-AATTTAATCTCTTTCATTTTTTATT
75748669 TTT
1 TTT
75748672 TAACTTCAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
28 11 0.37
29 8 0.27
30 11 0.37
ACGTcount: A:0.26, C:0.08, G:0.02, T:0.64
Consensus pattern (30 bp):
TTTAAAATTTAATCTCTTTCATTTTTTATT
Found at i:75752868 original size:26 final size:27
Alignment explanation
Indices: 75752810--75752880 Score: 76
Period size: 26 Copynumber: 2.7 Consensus size: 27
75752800 TGTCGTTTAC
** *
75752810 ATAATTAAAATAT-AAAATAGTATATT
1 ATAATTAAAATATAAAAATAAAACATT
*
75752836 ATGATTAAAATATAAAAATAAAACATT
1 ATAATTAAAATATAAAAATAAAACATT
75752863 A-AATTAAAAT-TGAAAAAT
1 ATAATTAAAATAT-AAAAAT
75752881 CATATTGATA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
25 1 0.03
26 26 0.68
27 11 0.29
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.32
Consensus pattern (27 bp):
ATAATTAAAATATAAAAATAAAACATT
Found at i:75753758 original size:5 final size:5
Alignment explanation
Indices: 75753748--75753772 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
75753738 AAGATGCGTT
75753748 CACCC CACCC CACCC CACCC CACCC
1 CACCC CACCC CACCC CACCC CACCC
75753773 TAATTCGCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.80, G:0.00, T:0.00
Consensus pattern (5 bp):
CACCC
Found at i:75761486 original size:22 final size:23
Alignment explanation
Indices: 75761461--75761503 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
75761451 AAAAAATAAT
* *
75761461 AATTT-AAGAATTAAATTTAAAG
1 AATTTAAAGAATAAAACTTAAAG
75761483 AATTTAAAGAATAAAACTTAA
1 AATTTAAAGAATAAAACTTAA
75761504 TTCAAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.58, C:0.02, G:0.07, T:0.33
Consensus pattern (23 bp):
AATTTAAAGAATAAAACTTAAAG
Found at i:75771072 original size:32 final size:34
Alignment explanation
Indices: 75771036--75771100 Score: 80
Period size: 34 Copynumber: 2.0 Consensus size: 34
75771026 TAACAGTGGT
*
75771036 ACTGGACCAGAG-CCCTT-TTCAGATTACAATAA
1 ACTGGACCAGAGCCCCTTATTCAGATAACAATAA
* **
75771068 ACTGGGCCTTAGCCCCTTATTCAGATAACAATA
1 ACTGGACCAGAGCCCCTTATTCAGATAACAATA
75771101 TGGCCCATAG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 9 0.33
33 5 0.19
34 13 0.48
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (34 bp):
ACTGGACCAGAGCCCCTTATTCAGATAACAATAA
Found at i:75775883 original size:26 final size:26
Alignment explanation
Indices: 75775853--75775960 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
75775843 TGAAATGCCC
75775853 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
75775879 ATCATGGAACATTTACATAACCTATT
1 ATCATGGAACATTTACCTAACCCATT
* *
75775905 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
75775931 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
75775957 ATCA
1 ATCA
75775961 ATTTGTATCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:75784796 original size:19 final size:21
Alignment explanation
Indices: 75784752--75784789 Score: 62
Period size: 19 Copynumber: 1.9 Consensus size: 21
75784742 GATTTTATAC
75784752 ATTTTAATGTATATTTTTAAA
1 ATTTTAATGTATATTTTTAAA
75784773 ATTTTAA-GTA-ATTTTTA
1 ATTTTAATGTATATTTTTA
75784790 TTATTTTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 7 0.41
20 3 0.18
21 7 0.41
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (21 bp):
ATTTTAATGTATATTTTTAAA
Found at i:75793883 original size:7 final size:7
Alignment explanation
Indices: 75793873--75793899 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
75793863 AAATATAAAA
75793873 AAATATT
1 AAATATT
75793880 AAATATT
1 AAATATT
75793887 AAATATT
1 AAATATT
75793894 AAATAT
1 AAATAT
75793900 GATTTAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
AAATATT
Found at i:75803737 original size:18 final size:19
Alignment explanation
Indices: 75803696--75803738 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
75803686 ATTTTCAGAT
75803696 ATTTA-AAAAATTTTAAAA
1 ATTTATAAAAATTTTAAAA
* *
75803714 AATTATAAAAA-TTTCAAA
1 ATTTATAAAAATTTTAAAA
75803732 ATTTATA
1 ATTTATA
75803739 TTTTTTTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (19 bp):
ATTTATAAAAATTTTAAAA
Found at i:75812139 original size:13 final size:13
Alignment explanation
Indices: 75812101--75812140 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
75812091 ACATAAGATC
75812101 AATTACTTGATTA
1 AATTACTTGATTA
* *
75812114 AATTATTTTATTA
1 AATTACTTGATTA
*
75812127 AATTACCTGATTA
1 AATTACTTGATTA
75812140 A
1 A
75812141 TTTAACTATT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.40, C:0.07, G:0.05, T:0.47
Consensus pattern (13 bp):
AATTACTTGATTA
Found at i:75812417 original size:2 final size:2
Alignment explanation
Indices: 75812410--75812434 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
75812400 TCTTTTCTTT
75812410 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
75812435 TTTTGTATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:75817928 original size:3 final size:3
Alignment explanation
Indices: 75817920--75817947 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
75817910 AACTTAACAC
75817920 AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA A
75817948 ATAACTGAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:75822478 original size:27 final size:27
Alignment explanation
Indices: 75822440--75822495 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
75822430 CTAGTTTGCG
75822440 TTGCCTTTAATATTTTTTTATAAACTA
1 TTGCCTTTAATATTTTTTTATAAACTA
75822467 TTGCCTTTAATATTTTTTTATAAACTA
1 TTGCCTTTAATATTTTTTTATAAACTA
75822494 TT
1 TT
75822496 TTAATATTGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.29, C:0.11, G:0.04, T:0.57
Consensus pattern (27 bp):
TTGCCTTTAATATTTTTTTATAAACTA
Found at i:75828888 original size:15 final size:15
Alignment explanation
Indices: 75828867--75828908 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
75828857 AAAAAGTAAA
*
75828867 AAAAATTAAATTTGC
1 AAAAATTAAATTTAC
*
75828882 TAAAATTAAATTTAC
1 AAAAATTAAATTTAC
*
75828897 AAAAACTAAATT
1 AAAAATTAAATT
75828909 GAAATTTGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.33
Consensus pattern (15 bp):
AAAAATTAAATTTAC
Found at i:75831365 original size:14 final size:14
Alignment explanation
Indices: 75831346--75831376 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
75831336 CCGGAACATG
75831346 ATACAAAAGAGTCC
1 ATACAAAAGAGTCC
75831360 ATACAAAAGAGTCC
1 ATACAAAAGAGTCC
75831374 ATA
1 ATA
75831377 TCACAGTGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.52, C:0.19, G:0.13, T:0.16
Consensus pattern (14 bp):
ATACAAAAGAGTCC
Found at i:75831501 original size:4 final size:4
Alignment explanation
Indices: 75831492--75831528 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
75831482 TATCTAGTGG
75831492 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
75831529 ATTCAAGTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.51
Consensus pattern (4 bp):
TGTA
Found at i:75835318 original size:18 final size:19
Alignment explanation
Indices: 75835295--75835337 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
75835285 ATATATTCTC
75835295 ATTATTATCATT-ACTTTT
1 ATTATTATCATTAACTTTT
* *
75835313 ATTATTATTATTAATTTTT
1 ATTATTATCATTAACTTTT
75835332 ATTATT
1 ATTATT
75835338 TGACATATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (19 bp):
ATTATTATCATTAACTTTT
Found at i:75835452 original size:24 final size:23
Alignment explanation
Indices: 75835408--75835464 Score: 55
Period size: 24 Copynumber: 2.5 Consensus size: 23
75835398 TTTTACTTAT
* *
75835408 TTTCTTATTACTTAGTTATTTACG
1 TTTCTTATTACTCAGTAATTT-CG
75835432 TTTCTTATTCACTCA-TAATTTCG
1 TTTCTTATT-ACTCAGTAATTTCG
*
75835455 -TTATTATTAC
1 TTTCTTATTAC
75835465 GTATAAGCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 2 0.07
22 7 0.24
23 2 0.07
24 14 0.48
25 4 0.14
ACGTcount: A:0.23, C:0.16, G:0.05, T:0.56
Consensus pattern (23 bp):
TTTCTTATTACTCAGTAATTTCG
Found at i:75837194 original size:33 final size:33
Alignment explanation
Indices: 75837152--75837218 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
75837142 AAATAATATG
75837152 TCTAAAGGTTATTGCATCCATCACAAAAGAATA
1 TCTAAAGGTTATTGCATCCATCACAAAAGAATA
*
75837185 TCTAAAGGTTATTGTATCCATCACAAAAGAATA
1 TCTAAAGGTTATTGCATCCATCACAAAAGAATA
75837218 T
1 T
75837219 TATATCTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.30
Consensus pattern (33 bp):
TCTAAAGGTTATTGCATCCATCACAAAAGAATA
Found at i:75837814 original size:25 final size:25
Alignment explanation
Indices: 75837780--75837841 Score: 108
Period size: 25 Copynumber: 2.5 Consensus size: 25
75837770 GGTTATTCTT
*
75837780 ATTAAGTTTGTAAATACATCTAACA
1 ATTAACTTTGTAAATACATCTAACA
75837805 ATTAACTTTGTAAATACATCTAACA
1 ATTAACTTTGTAAATACATCTAACA
75837830 ATTAAC-TTGTAA
1 ATTAACTTTGTAA
75837842 TGATTTATCT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
24 6 0.17
25 30 0.83
ACGTcount: A:0.44, C:0.13, G:0.06, T:0.37
Consensus pattern (25 bp):
ATTAACTTTGTAAATACATCTAACA
Found at i:75843344 original size:21 final size:21
Alignment explanation
Indices: 75843307--75843377 Score: 74
Period size: 21 Copynumber: 3.5 Consensus size: 21
75843297 TGATCAGAAT
*
75843307 ACGACACATAA-GTGCCTGAA
1 ACGACACACAAGGTGCCTGAA
* **
75843327 ACGACACACGAGGTGCCTGCT
1 ACGACACACAAGGTGCCTGAA
*
75843348 GCGACACACAAGGTGCCTGAA
1 ACGACACACAAGGTGCCTGAA
*
75843369 A-TACACACA
1 ACGACACACA
75843378 TAAAGTGCCT
Statistics
Matches: 40, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
20 16 0.40
21 24 0.60
ACGTcount: A:0.35, C:0.30, G:0.23, T:0.13
Consensus pattern (21 bp):
ACGACACACAAGGTGCCTGAA
Found at i:75843645 original size:28 final size:28
Alignment explanation
Indices: 75843594--75843678 Score: 125
Period size: 29 Copynumber: 3.0 Consensus size: 28
75843584 AACACACCAG
* *
75843594 TATAATCCTCCAAAAACACACCAGTATCA
1 TATAATCCTCC-AAAACACACCAGAATAA
*
75843623 TATAATCCTCCCAAACACACCAGAATAA
1 TATAATCCTCCAAAACACACCAGAATAA
75843651 TATAATCCATCCAAAACACACCAGAATA
1 TATAATCC-TCCAAAACACACCAGAATA
75843679 GCACAAAGTG
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 22 0.43
29 29 0.57
ACGTcount: A:0.47, C:0.31, G:0.04, T:0.19
Consensus pattern (28 bp):
TATAATCCTCCAAAACACACCAGAATAA
Found at i:75848376 original size:29 final size:30
Alignment explanation
Indices: 75848330--75848391 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 30
75848320 TGGGACAAAA
*
75848330 TTGATTTAATGTGTAATTTTATACATGAAAT
1 TTGATTT-ATGTGCAATTTTATACATGAAAT
*
75848361 TTGATTT-TGTGCAATTTTATATATGAAAT
1 TTGATTTATGTGCAATTTTATACATGAAAT
75848390 TT
1 TT
75848392 TAATTTGATC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 22 0.76
31 7 0.24
ACGTcount: A:0.32, C:0.03, G:0.13, T:0.52
Consensus pattern (30 bp):
TTGATTTATGTGCAATTTTATACATGAAAT
Found at i:75848398 original size:29 final size:29
Alignment explanation
Indices: 75848339--75848398 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
75848329 ATTGATTTAA
* *
75848339 TGTGTAATTTTATACATGAAATTTGATTT
1 TGTGCAATTTTATACATGAAATTTGAATT
* *
75848368 TGTGCAATTTTATATATGAAATTTTAATT
1 TGTGCAATTTTATACATGAAATTTGAATT
75848397 TG
1 TG
75848399 ATCTAATTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.32, C:0.03, G:0.13, T:0.52
Consensus pattern (29 bp):
TGTGCAATTTTATACATGAAATTTGAATT
Found at i:75850957 original size:15 final size:16
Alignment explanation
Indices: 75850937--75850966 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
75850927 CTAACAAAAG
75850937 AACCCAAT-ACCCACA
1 AACCCAATAACCCACA
75850952 AACCCAATAACCCAC
1 AACCCAATAACCCAC
75850967 CTAAACACTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.47, C:0.47, G:0.00, T:0.07
Consensus pattern (16 bp):
AACCCAATAACCCACA
Found at i:75852167 original size:64 final size:64
Alignment explanation
Indices: 75852051--75852174 Score: 155
Period size: 64 Copynumber: 1.9 Consensus size: 64
75852041 CATTTATATA
* * * **
75852051 TATATACATACTTATATATTTTATATTTCATAATTTTTATATATATTTTATATACATATACGTG
1 TATATACATACTTATAAATTTTATATTTAATAATTTTGATATATATCATATATACATATACGTG
75852115 TATATACATACTTACATAAACTTTTATATTTAATAATTTTGA-A-ATA-CATATATACATATA
1 TATATACATACTT--ATAAA-TTTTATATTTAATAATTTTGATATATATCATATATACATATA
75852175 TTTTTCATAT
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
64 25 0.48
65 3 0.06
66 5 0.10
67 19 0.37
ACGTcount: A:0.40, C:0.09, G:0.02, T:0.48
Consensus pattern (64 bp):
TATATACATACTTATAAATTTTATATTTAATAATTTTGATATATATCATATATACATATACGTG
Found at i:75867160 original size:46 final size:44
Alignment explanation
Indices: 75867093--75867461 Score: 203
Period size: 44 Copynumber: 8.5 Consensus size: 44
75867083 ATTATACAGG
*
75867093 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAG-A-TTCAGA
* *
75867139 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGA-T-AGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGATTCAG--A
* * * * * *
75867183 TCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAG-----GA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGATTCAGA
* * * *
75867222 TCTTATCTCTCTGA-AGTTACAGTAGAGA-AGATC--ACA-TCAGG
1 TCTTATCTCCCTGAGA-TTACAGTGGA-ACAGATCAAAGATTCAGA
* * *
75867263 TCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCGGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAG-A-TTCAGA
* * ** ****
75867309 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGATTCAGA
* * * *
75867353 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGA--CACTA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGATTCA-GA
* * * * **
75867396 TCCTATCTCCCTGA-AGTTACAGTGGAGCGGATTAAA-ATAAAGGA
1 TCTTATCTCCCTGAGA-TTACAGTGGAACAGATCAAAGATTCA-GA
* *
75867440 TCTTATCTCTCTGAGGTTACAG
1 TCTTATCTCCCTGAGATTACAG
75867462 CAGAGTAGAT
Statistics
Matches: 250, Mismatches: 53, Indels: 42
0.72 0.15 0.12
Matches are distributed among these distances:
37 1 0.00
38 1 0.00
39 23 0.09
40 1 0.00
41 28 0.11
42 6 0.02
43 32 0.13
44 89 0.36
45 1 0.00
46 68 0.27
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (44 bp):
TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGATTCAGA
Found at i:75867210 original size:44 final size:46
Alignment explanation
Indices: 75867096--75867423 Score: 173
Period size: 46 Copynumber: 7.5 Consensus size: 46
75867086 ATACAGGTCT
* * * *
75867096 TATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCT
1 TATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATGTCAGATCC
*
75867142 TATCTCCCTGAGATTACAGCGGAGCAGATCAAAG-ATAGT-A-ATCC
1 TATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAAT-GTCAGATCC
* * * * *
75867186 TATCTCCTTGAGATTACAATGGAGCGGAT--TA-AA-G---GATCT
1 TATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATGTCAGATCC
* * * * * *
75867225 TATCTCTCTGA-AGTTACAGTAGAGAAGATC--A-CA--TCAGGTCT
1 TATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAGAATGTCAGATCC
** * * * *
75867266 TATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCGGATCT
1 TATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATGTCAGATCC
* ** * *
75867312 TATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCA-G--AGATCT
1 TATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-AATGTCAGATCC
* * *
75867356 TATCTCCCTGAGATTACAGCGGAGCAGATC---GAA-GACACTATCC
1 TATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATGTCA-GATCC
75867399 TATCTCCCTGA-AGTTACAGTGGAGC
1 TATCTCCCTGAGA-TTACAGTGGAGC
75867424 GGATTAAAAT
Statistics
Matches: 220, Mismatches: 43, Indels: 41
0.72 0.14 0.13
Matches are distributed among these distances:
38 1 0.00
39 26 0.12
40 3 0.01
41 28 0.13
42 5 0.02
43 26 0.12
44 61 0.28
45 3 0.01
46 66 0.30
47 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.26
Consensus pattern (46 bp):
TATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATGTCAGATCC
Found at i:75867403 original size:87 final size:87
Alignment explanation
Indices: 75867312--75867473 Score: 218
Period size: 87 Copynumber: 1.9 Consensus size: 87
75867302 TTTCGGATCT
* * * *
75867312 TATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGC-CAGAGATCTTATCTCCCTGAGATTACAGC
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAAG-GATCTTATCTCCCTGAGATTACAGC
*
75867376 GGAGCAGATCGAAGACACTATCC
65 AGAGCAGATCGAAGACACTATCC
* * * *
75867399 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGCA
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCCCTGAGATTACAGCA
*
75867464 GAGTAGATCG
66 GAGCAGATCG
75867474 CATCAAGTCT
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
87 62 0.97
88 2 0.03
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (87 bp):
TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCCCTGAGATTACAGCA
GAGCAGATCGAAGACACTATCC
Found at i:75867577 original size:218 final size:213
Alignment explanation
Indices: 75867136--75867577 Score: 480
Period size: 218 Copynumber: 2.0 Consensus size: 213
75867126 AAAGAATTTC
* * *
75867136 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATT
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACACTAATCCTATCTCCCTGAGATT
* *
75867201 ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCT
66 ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACATCAAGTCT
* * ** * * *
75867266 TATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCGGATCTTATCTCCCTGAGGTTACAG
131 TATCTCCCTGAGATTACAGTGGAACAGACCAAAGAAATAAGGA-CGTATCTCCCTAAAGTTACAG
* ** *
75867331 TGGAGCAGATTGAAGCCAG
195 CGGAGCAGACAGAAGACAG
*
75867350 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACT-ATCCTATCTCCCTGA-AGT
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACACTAATCCTATCTCCCTGAGA-T
* * * *
75867413 TACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGCAGAGTAGATCGCATC
65 TACAATGGAGCGGA-T----TAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACATC
* * * *
75867478 AAGTCTTATTTCCCTGAAGA-TGCAGTGGAACAGACTGAAA-ACAATAAGG-CGTGTCTCCCTAA
125 AAGTCTTATCTCCCTG-AGATTACAGTGGAACAGAC-CAAAGA-AATAAGGACGTATCTCCCTAA
** * *
75867540 AGTTGTAGCGGAGCGGACAGAAGATAG
187 AGTTACAGCGGAGCAGACAGAAGACAG
*
75867567 TGATTCTTATC
1 AGA-TCTTATC
75867578 ATGTCTAATC
Statistics
Matches: 188, Mismatches: 30, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
212 1 0.01
213 28 0.15
214 43 0.23
217 30 0.16
218 76 0.40
219 10 0.05
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (213 bp):
AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACACTAATCCTATCTCCCTGAGATT
ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACATCAAGTCT
TATCTCCCTGAGATTACAGTGGAACAGACCAAAGAAATAAGGACGTATCTCCCTAAAGTTACAGC
GGAGCAGACAGAAGACAG
Found at i:75868051 original size:15 final size:16
Alignment explanation
Indices: 75868031--75868060 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
75868021 CTAACAAAAG
75868031 AACCCAAT-ACCCACA
1 AACCCAATAACCCACA
75868046 AACCCAATAACCCAC
1 AACCCAATAACCCAC
75868061 CTAAACACTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.47, C:0.47, G:0.00, T:0.07
Consensus pattern (16 bp):
AACCCAATAACCCACA
Found at i:75871052 original size:23 final size:24
Alignment explanation
Indices: 75871026--75871070 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
75871016 TAGGAATACC
*
75871026 TCATCTAA-ATATT-TTAGTATTTA
1 TCATATAACATATTGTTA-TATTTA
75871049 TCATATAACATATTGTTATATT
1 TCATATAACATATTGTTATATT
75871071 ATTCTATCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 7 0.37
24 9 0.47
25 3 0.16
ACGTcount: A:0.36, C:0.09, G:0.04, T:0.51
Consensus pattern (24 bp):
TCATATAACATATTGTTATATTTA
Found at i:75873286 original size:46 final size:46
Alignment explanation
Indices: 75873234--75873409 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
75873224 TGGTTGAGCA
75873234 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * * *
75873280 TTCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
75873325 CATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75873373 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75873410 GCAGGTTACA
Statistics
Matches: 103, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.59
47 25 0.24
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75873390 original size:93 final size:93
Alignment explanation
Indices: 75873231--75873401 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
75873221 GGATGGTTGA
* **
75873231 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75873296 TGAGTTCGAGTTCGTGAAATGTAACTAG
66 TGAGTTCGAGTTCGTGAAATGTAACTAG
* * *
75873324 GCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75873389 TGAGTTCGAGTTC
66 TGAGTTCGAGTTC
75873402 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTTCGAGTTCGTGAAATGTAACTAG
Found at i:75876425 original size:20 final size:20
Alignment explanation
Indices: 75876402--75876449 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
75876392 AAATCCAAAT
75876402 TAAAATATTAAAATTCAGGA
1 TAAAATATTAAAATTCAGGA
* *
75876422 TAAAATCTTAAAATTTAGGA
1 TAAAATATTAAAATTCAGGA
75876442 TAAGAATA
1 TAA-AATA
75876450 CTGATGTGGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 21 0.88
21 3 0.12
ACGTcount: A:0.54, C:0.04, G:0.10, T:0.31
Consensus pattern (20 bp):
TAAAATATTAAAATTCAGGA
Found at i:75876681 original size:23 final size:23
Alignment explanation
Indices: 75876655--75876700 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
75876645 TTAATTGTAT
75876655 AAATTATTAAAAAATTCATAAAA
1 AAATTATTAAAAAATTCATAAAA
* * *
75876678 AAATTATTAGAAATTTTATAAAA
1 AAATTATTAAAAAATTCATAAAA
75876701 CCCTATTCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (23 bp):
AAATTATTAAAAAATTCATAAAA
Found at i:75888338 original size:17 final size:17
Alignment explanation
Indices: 75888316--75888358 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
75888306 ATAATTTACT
75888316 TTTTAAAATTTTATGAA
1 TTTTAAAATTTTATGAA
*
75888333 TTTTAATAA-TTTATTAA
1 TTTTAA-AATTTTATGAA
75888350 -TTTAAAATT
1 TTTTAAAATT
75888359 AAACTAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
15 2 0.09
16 6 0.26
17 13 0.57
18 2 0.09
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (17 bp):
TTTTAAAATTTTATGAA
Found at i:75894055 original size:69 final size:69
Alignment explanation
Indices: 75893975--75894114 Score: 244
Period size: 69 Copynumber: 2.0 Consensus size: 69
75893965 GGGCATCCCT
* * *
75893975 TTCATTCATACTTTTCTACTAGCTTTTGATTGGCCTTCCCCAGATCAACAAGTTTGCACCATTAA
1 TTCATTAATACTTTTCTACTAGCTTGTGATTGGCCTTCCCCAGATCAAAAAGTTTGCACCATTAA
75894040 TGTC
66 TGTC
*
75894044 TTCATTAATACTTTTCTACTAGCTTGTGATTGGCTTTCCCCAGATCAAAAAGTTTGCACCATTAA
1 TTCATTAATACTTTTCTACTAGCTTGTGATTGGCCTTCCCCAGATCAAAAAGTTTGCACCATTAA
75894109 TGTC
66 TGTC
75894113 TT
1 TT
75894115 ATTCACATTG
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
69 67 1.00
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.40
Consensus pattern (69 bp):
TTCATTAATACTTTTCTACTAGCTTGTGATTGGCCTTCCCCAGATCAAAAAGTTTGCACCATTAA
TGTC
Found at i:75899142 original size:106 final size:106
Alignment explanation
Indices: 75898954--75899154 Score: 384
Period size: 106 Copynumber: 1.9 Consensus size: 106
75898944 AAAATTTTTC
*
75898954 TAAATAAGGTAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGAT
1 TAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGAT
75899019 TTCTCGTTCGACCAAATAGCCAAATATCCTTTTTAAACTTT
66 TTCTCGTTCGACCAAATAGCCAAATATCCTTTTTAAACTTT
75899060 TAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGAT
1 TAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGAT
*
75899125 TTCTCGTTCGACTAAATAGCCAAATATCCT
66 TTCTCGTTCGACCAAATAGCCAAATATCCT
75899155 CTTAAAGCTT
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
106 93 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.31
Consensus pattern (106 bp):
TAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGAT
TTCTCGTTCGACCAAATAGCCAAATATCCTTTTTAAACTTT
Found at i:75907617 original size:4 final size:4
Alignment explanation
Indices: 75907608--75907633 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
75907598 TAATCCCTAT
75907608 ATTA ATTA ATTA ATTA ATTA ATTA AT
1 ATTA ATTA ATTA ATTA ATTA ATTA AT
75907634 CTTTTATTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
ATTA
Found at i:75909568 original size:16 final size:16
Alignment explanation
Indices: 75909549--75909610 Score: 56
Period size: 16 Copynumber: 3.9 Consensus size: 16
75909539 AAATAATAGA
75909549 ATTTAATTAAAATATT
1 ATTTAATTAAAATATT
*
75909565 ATTTCATTAAAATATTT
1 ATTTAATTAAAATA-TT
* * *
75909582 AATAAATGAAAATAATT
1 ATTTAATTAAAAT-ATT
75909599 -TTTAA-TAAAATA
1 ATTTAATTAAAATA
75909611 AAATTATATT
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
14 1 0.03
15 5 0.14
16 16 0.44
17 13 0.36
18 1 0.03
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (16 bp):
ATTTAATTAAAATATT
Found at i:75915518 original size:22 final size:22
Alignment explanation
Indices: 75915471--75915512 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
75915461 TTATTTGGTC
75915471 ATTTTTAGTCTCTATACTTTCA
1 ATTTTTAGTCTCTATACTTTCA
75915493 ATTTTTAGTCTCTATACTTT
1 ATTTTTAGTCTCTATACTTT
75915513 TTATTTGGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.21, C:0.17, G:0.05, T:0.57
Consensus pattern (22 bp):
ATTTTTAGTCTCTATACTTTCA
Found at i:75916915 original size:3 final size:3
Alignment explanation
Indices: 75916907--75916934 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
75916897 TTCATTTCAA
75916907 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
75916935 TAAATAGCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:75918175 original size:18 final size:18
Alignment explanation
Indices: 75918148--75918238 Score: 141
Period size: 18 Copynumber: 5.2 Consensus size: 18
75918138 TACGACCGTT
75918148 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
75918166 TACGGCACTATTTACGTA
1 TACGGTACTATTCACGTA
75918184 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
75918202 TAC-G-ACTATTCACGTA
1 TACGGTACTATTCACGTA
*
75918218 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
75918236 TAC
1 TAC
75918239 AGTAGTTGGG
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
16 15 0.23
17 2 0.03
18 49 0.74
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.33
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:75918217 original size:34 final size:36
Alignment explanation
Indices: 75918148--75918238 Score: 150
Period size: 34 Copynumber: 2.6 Consensus size: 36
75918138 TACGACCGTT
*
75918148 TACGGTACTATTCACGTATACGGCACTATTTACGTA
1 TACGGTACTATTCACGTATACGGCACTATTCACGTA
75918184 TACGGTACTATTCACGTATAC-G-ACTATTCACGTA
1 TACGGTACTATTCACGTATACGGCACTATTCACGTA
*
75918218 TACGGTACTGTTCACGTATAC
1 TACGGTACTATTCACGTATAC
75918239 AGTAGTTGGG
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
34 31 0.58
35 1 0.02
36 21 0.40
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.33
Consensus pattern (36 bp):
TACGGTACTATTCACGTATACGGCACTATTCACGTA
Found at i:75923415 original size:6 final size:6
Alignment explanation
Indices: 75923404--75923432 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
75923394 ACACAAACGG
75923404 AATTAT AATTAT AATTAT AATTAT AATTA
1 AATTAT AATTAT AATTAT AATTAT AATTA
75923433 ATACATTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
AATTAT
Found at i:75924540 original size:30 final size:29
Alignment explanation
Indices: 75924504--75924568 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 29
75924494 TGGTAAATTA
75924504 AAAAATTAAGTATT-AAAAATATAAGTTAT
1 AAAAATTAAGTATTAAAAAAT-TAAGTTAT
*
75924533 GAAAAATTAATTATTAAAAAATTAAGTTAT
1 -AAAAATTAAGTATTAAAAAATTAAGTTAT
75924563 AAAAAT
1 AAAAAT
75924569 AAAATAGATT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
29 6 0.18
30 21 0.64
31 6 0.18
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (29 bp):
AAAAATTAAGTATTAAAAAATTAAGTTAT
Found at i:75924565 original size:15 final size:15
Alignment explanation
Indices: 75924502--75924567 Score: 82
Period size: 15 Copynumber: 4.4 Consensus size: 15
75924492 TTTGGTAAAT
75924502 TAAAAAATTAAG-TA
1 TAAAAAATTAAGTTA
*
75924516 TTAAAAATATAAGTTA
1 TAAAAAAT-TAAGTTA
*
75924532 TGAAAAATTAA-TTA
1 TAAAAAATTAAGTTA
75924546 TTAAAAAATTAAGTTA
1 -TAAAAAATTAAGTTA
75924562 TAAAAA
1 TAAAAA
75924568 TAAAATAGAT
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
14 10 0.22
15 23 0.51
16 12 0.27
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (15 bp):
TAAAAAATTAAGTTA
Found at i:75934119 original size:13 final size:12
Alignment explanation
Indices: 75934101--75934303 Score: 114
Period size: 13 Copynumber: 16.3 Consensus size: 12
75934091 ATCACATAAT
75934101 TTATATCTTTATA
1 TTATAT-TTTATA
75934114 TTATATTTTATAA
1 TTATATTTTAT-A
*
75934127 TTATTTTATTATA
1 TTATATT-TTATA
*
75934140 TTAT-TATTATTA
1 TTATATTTTA-TA
75934152 TTAT-TATTTATA
1 TTATAT-TTTATA
*
75934164 TTATTATTTACAAATTA
1 TTA-TATTT---TA-TA
*
75934181 TTATTATTTTACA
1 TTA-TATTTTATA
*
75934194 TTATTATTATATA
1 TTA-TATTTTATA
*
75934207 TTAT-TTATATA
1 TTATATTTTATA
* *
75934218 TTATGTATTAT-
1 TTATATTTTATA
*
75934229 TTATATTATATA
1 TTATATTTTATA
*
75934241 -TATATTATATA
1 TTATATTTTATA
*
75934252 TTAT-TTTTACA
1 TTATATTTTATA
75934263 TATATATTTTCATA
1 T-TATATTTT-ATA
*
75934277 TTATATATTATA
1 TTATATTTTATA
*
75934289 AT-TATTTTATA
1 TTATATTTTATA
75934300 TTAT
1 TTAT
75934304 TATGTCATCT
Statistics
Matches: 153, Mismatches: 20, Indels: 35
0.74 0.10 0.17
Matches are distributed among these distances:
11 48 0.31
12 34 0.22
13 50 0.33
14 9 0.06
16 1 0.01
17 11 0.07
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.62
Consensus pattern (12 bp):
TTATATTTTATA
Found at i:75934144 original size:3 final size:3
Alignment explanation
Indices: 75934112--75934306 Score: 108
Period size: 3 Copynumber: 64.0 Consensus size: 3
75934102 TATATCTTTA
*
75934112 TAT TA- TAT T-T TAT AAT TAT T-T TAT TA- TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
75934156 TAT T-T ATAT TAT TATT TACA AAT TAT TAT TAT T-T TA- CAT TAT TAT
1 TAT TAT -TAT TAT TA-T TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT
75934201 TAT ATAT TATT TAT ATAT TAT GTAT TAT T-T ATAT TAT ATAT ATAT TAT
1 TAT -TAT TA-T TAT -TAT TAT -TAT TAT TAT -TAT TAT -TAT -TAT TAT
* * *
75934249 ATAT TAT TTT TACA TAT ATAT T-T TCA- TAT TAT ATAT TAT AAT TAT
1 -TAT TAT TAT TA-T TAT -TAT TAT T-AT TAT TAT -TAT TAT TAT TAT
75934294 T-T TA- TAT TAT TAT
1 TAT TAT TAT TAT TAT
75934307 GTCATCTTTT
Statistics
Matches: 152, Mismatches: 15, Indels: 50
0.70 0.07 0.23
Matches are distributed among these distances:
2 20 0.13
3 96 0.63
4 36 0.24
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:75934247 original size:48 final size:45
Alignment explanation
Indices: 75934141--75934304 Score: 123
Period size: 44 Copynumber: 3.6 Consensus size: 45
75934131 TTTATTATAT
*
75934141 TATTAT-TATTATTATTATTTATATTATTATTTACAAAT-TATTATT-A
1 TATTATATATTA-TATTA-TTATA-TATTATTTACATATATATT-TTCA
* * *
75934187 T-TT-TACA-T-TATTATTATATATTATTTATATATTATGTATTATTTA
1 TATTATATATTATATTATTATATATTATTTACATA-TA--TATT-TTCA
75934232 TATTATATA-TATATTA-TATATTATT-TTTACATATATATTTTCA
1 TATTATATATTATATTATTATA-TATTATTTACATATATATTTTCA
*
75934275 TATTATATATTATAATTATTTTATATTATT
1 TATTATATATTAT-ATTATTATATATTATT
75934305 ATGTCATCTT
Statistics
Matches: 97, Mismatches: 7, Indels: 28
0.73 0.05 0.21
Matches are distributed among these distances:
40 11 0.11
41 6 0.06
42 5 0.05
43 12 0.12
44 16 0.16
45 13 0.13
46 10 0.10
47 15 0.15
48 9 0.09
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.61
Consensus pattern (45 bp):
TATTATATATTATATTATTATATATTATTTACATATATATTTTCA
Found at i:75934284 original size:45 final size:45
Alignment explanation
Indices: 75934133--75934304 Score: 150
Period size: 48 Copynumber: 3.9 Consensus size: 45
75934123 ATAATTATTT
75934133 TATTA-TATTATTATTAT-TAT-TATTATT-TATATTATTATTTACA
1 TATTATTATTA-TATTATATATATATTATTATATATTATT-TTTACA
* * *
75934176 AATTATTATTAT-TT-TACAT-TATTATTATATATTA--TTTATA
1 TATTATTATTATATTATATATATATTATTATATATTATTTTTACA
75934216 TATTATGTATTAT-TTATATTATATATATATTATATATTATTTTTACA
1 TATTAT-TATTATATTATA-TATATAT-TATTATATATTATTTTTACA
*
75934263 TATATATT-TTCATATTATATATTATAATTATTTTATATTATT
1 TAT-TATTATT-ATATTATATA-TAT-ATTATTATATATTATT
75934305 ATGTCATCTT
Statistics
Matches: 107, Mismatches: 7, Indels: 25
0.77 0.05 0.18
Matches are distributed among these distances:
40 10 0.09
41 9 0.08
42 13 0.12
43 14 0.13
44 8 0.07
45 12 0.11
46 2 0.02
47 13 0.12
48 24 0.22
49 2 0.02
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.61
Consensus pattern (45 bp):
TATTATTATTATATTATATATATATTATTATATATTATTTTTACA
Found at i:75934613 original size:15 final size:14
Alignment explanation
Indices: 75934586--75934632 Score: 51
Period size: 15 Copynumber: 3.3 Consensus size: 14
75934576 CCATTATATT
75934586 TTATTTT-TTATAA
1 TTATTTTCTTATAA
75934599 TTATTATTCTTATAA
1 TTATT-TTCTTATAA
* *
75934614 ATATTTTTTTATATA
1 TTATTTTCTTATA-A
75934629 TTAT
1 TTAT
75934633 ACTATTAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
13 5 0.18
14 9 0.32
15 14 0.50
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (14 bp):
TTATTTTCTTATAA
Found at i:75934641 original size:27 final size:29
Alignment explanation
Indices: 75934589--75934644 Score: 73
Period size: 27 Copynumber: 2.0 Consensus size: 29
75934579 TTATATTTTA
*
75934589 TTTTTTATAATTATTATTCTTATAAATAT
1 TTTTTTATAATTATTATACTTATAAATAT
75934618 TTTTTTAT-A-TATTATAC-TATTAAATAT
1 TTTTTTATAATTATTATACTTA-TAAATAT
75934645 CACATTTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
26 2 0.08
27 14 0.56
28 1 0.04
29 8 0.32
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.61
Consensus pattern (29 bp):
TTTTTTATAATTATTATACTTATAAATAT
Found at i:75939260 original size:21 final size:21
Alignment explanation
Indices: 75939234--75939274 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
75939224 ATCTGCTCAA
* *
75939234 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
75939255 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
75939275 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:75942102 original size:26 final size:25
Alignment explanation
Indices: 75942073--75942129 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 25
75942063 GTGCCACTTG
*
75942073 CACCTCCCATTTT-TTTGACTTTTCAA
1 CACC-CCC-TTTTATTTGACCTTTCAA
75942099 CA-CCCCTTTTAATTTGACCTTTCAA
1 CACCCCCTTTT-ATTTGACCTTTCAA
75942124 CACCCC
1 CACCCC
75942130 ACTCATATCA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
23 4 0.15
24 3 0.11
25 15 0.56
26 5 0.19
ACGTcount: A:0.21, C:0.37, G:0.04, T:0.39
Consensus pattern (25 bp):
CACCCCCTTTTATTTGACCTTTCAA
Found at i:75948036 original size:117 final size:118
Alignment explanation
Indices: 75947765--75948555 Score: 1041
Period size: 117 Copynumber: 6.7 Consensus size: 118
75947755 GTCGTCTTCT
* * * * * *
75947765 TCTTCTAGTAATCTTGCTGGTGGATTGTTTCCTTCGTCGTCACTAGGTGGTTTCTCACCGGCGAA
1 TCTTTTAGTAATCTTTCTGGAGGATTATCTCC-T--TCGTCACTAGGTGGTTTCTCGCCGGCGAA
* *
75947830 TGGACTCTCTTCCTCGACGTCTGCTTGTAGTAATCGTTTCTCACCGATGACCCCAATG
63 TGGACTCTCTTCCTCAACG--TGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATG
* ** *
75947888 CCTGCTAGTAATCTTTCTGGAGGACTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
1 TCTTTTAGTAATCTTTCTGGAGGATTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
* * *
75947953 ACTCTCTTCCTCAACGT-CTTGTAGTAATCGTTCCTCACGGATGAGCTCAATG
66 ACTCTCTTCCTCAACGTGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATG
* * *
75948005 TCTTTTAATAATCTTTCTGGGGGATTATCTCCTTCATCACTAGGTGGTTTCTCGCCGGCGAATGG
1 TCTTTTAGTAATCTTTCTGGAGGATTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
* * * * *
75948070 ACTTTCTTCCTCGACGTCTGCTTGTAGTAACCGTTTTTCACCGACGACCTCAATG
66 ACTCTCTTCCTCAACG--TGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATG
* * *
75948125 TCTTTTAGTAATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCACCGGCAAATGG
1 TCTTTTAGTAATCTTTCTGGAGGATTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
** *
75948190 ACTCTCTTCCTCAACGT-CTTGTAGTTTTCGTTTCTTACCGATGACCTCAATG
66 ACTCTCTTCCTCAACGTGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATG
*
75948242 TCTTTTAGTAATCTTTCTGGAGGATTCTCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
1 TCTTTTAGTAATCTTTCTGGAGGATTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
* * ** *
75948307 ACTTTCTTCCTCAACAT-CTTGTAGTTTTCGTTTCTCACCGATGACCTCGATG
66 ACTCTCTTCCTCAACGTGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATG
* *
75948359 TCTTTTAGTAATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGCGGTTTCTCGCCGGCGAATGG
1 TCTTTTAGTAATCTTTCTGGAGGATTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
** *
75948424 ACTCTCTTCCTCGACATC-TGCTTGTAGTTTTCGTTTCTCACCGATGACCTCAATT
66 ACTCTCTTCCTC-A-A-CGTGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATG
* * * * * *
75948479 TCTTTTAGTAATCTTTCTGGGGGCTTATCTCCTTCGTAACTAGGTGGTTTCTCACCGGCAAACGG
1 TCTTTTAGTAATCTTTCTGGAGGATTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
*
75948544 ACTTTCTTCCTC
66 ACTCTCTTCCTC
75948556 GACATTCTCT
Statistics
Matches: 598, Mismatches: 63, Indels: 17
0.88 0.09 0.03
Matches are distributed among these distances:
117 316 0.53
118 3 0.01
119 3 0.01
120 250 0.42
122 1 0.00
123 25 0.04
ACGTcount: A:0.16, C:0.26, G:0.20, T:0.37
Consensus pattern (118 bp):
TCTTTTAGTAATCTTTCTGGAGGATTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
ACTCTCTTCCTCAACGTGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATG
Found at i:75948241 original size:237 final size:237
Alignment explanation
Indices: 75947765--75948558 Score: 1137
Period size: 237 Copynumber: 3.3 Consensus size: 237
75947755 GTCGTCTTCT
* * * * *
75947765 TCTTCTAGTAATCTTGCTGGTGGATTGTTTCCTTCGTCGTCACTAGGTGGTTTCTCACCGGCGAA
1 TCTTTTAGTAATCTTTCTGGGGGATTATCTCC-T--TCGTCACTAGGTGGTTTCTCACCGGCGAA
* * * **
75947830 TGGACTCTCTTCCTCGACGTCTGCTTGTAGTAATCGTTTCTCACCGATGACCCCAATGCCTGCTA
63 TGGACTTTCTTCCTCGACGTCTGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATGTCTTTTA
* *
75947895 GTAATCTTTCTGGAGGACTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTCTCT
128 GTAATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTCTCT
** * * *
75947960 TCCTCAACGTCTTGTAGTAATCGTTCCTCACGGATGAGCTCAATG
193 TCCTCAACGTCTTGTAGTTTTCGTTTCTCACCGATGACCTCAATG
* * *
75948005 TCTTTTAATAATCTTTCTGGGGGATTATCTCCTTCATCACTAGGTGGTTTCTCGCCGGCGAATGG
1 TCTTTTAGTAATCTTTCTGGGGGATTATCTCCTTCGTCACTAGGTGGTTTCTCACCGGCGAATGG
* * *
75948070 ACTTTCTTCCTCGACGTCTGCTTGTAGTAACCGTTTTTCACCGACGACCTCAATGTCTTTTAGTA
66 ACTTTCTTCCTCGACGTCTGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATGTCTTTTAGTA
* *
75948135 ATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCACCGGCAAATGGACTCTCTTCC
131 ATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTCTCTTCC
*
75948200 TCAACGTCTTGTAGTTTTCGTTTCTTACCGATGACCTCAATG
196 TCAACGTCTTGTAGTTTTCGTTTCTCACCGATGACCTCAATG
* * *
75948242 TCTTTTAGTAATCTTTCTGGAGGATTCTCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
1 TCTTTTAGTAATCTTTCTGGGGGATTATCTCCTTCGTCACTAGGTGGTTTCTCACCGGCGAATGG
* * ** *
75948307 ACTTTCTTCCTCAAC--AT-CTTGTAGTTTTCGTTTCTCACCGATGACCTCGATGTCTTTTAGTA
66 ACTTTCTTCCTCGACGTCTGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATGTCTTTTAGTA
*
75948369 ATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGCGGTTTCTCGCCGGCGAATGGACTCTCTTCC
131 ATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTCTCTTCC
*
75948434 TCGACATC-TGCTTGTAGTTTTCGTTTCTCACCGATGACCTCAATT
196 TC-A-A-CGT-CTTGTAGTTTTCGTTTCTCACCGATGACCTCAATG
* * * *
75948479 TCTTTTAGTAATCTTTCTGGGGGCTTATCTCCTTCGTAACTAGGTGGTTTCTCACCGGCAAACGG
1 TCTTTTAGTAATCTTTCTGGGGGATTATCTCCTTCGTCACTAGGTGGTTTCTCACCGGCGAATGG
75948544 ACTTTCTTCCTCGAC
66 ACTTTCTTCCTCGAC
75948559 ATTCTCTTCC
Statistics
Matches: 499, Mismatches: 51, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
234 103 0.21
235 2 0.00
236 2 0.00
237 365 0.73
239 1 0.00
240 26 0.05
ACGTcount: A:0.16, C:0.26, G:0.20, T:0.37
Consensus pattern (237 bp):
TCTTTTAGTAATCTTTCTGGGGGATTATCTCCTTCGTCACTAGGTGGTTTCTCACCGGCGAATGG
ACTTTCTTCCTCGACGTCTGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATGTCTTTTAGTA
ATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTCTCTTCC
TCAACGTCTTGTAGTTTTCGTTTCTCACCGATGACCTCAATG
Found at i:75948467 original size:354 final size:356
Alignment explanation
Indices: 75947765--75948555 Score: 1154
Period size: 354 Copynumber: 2.2 Consensus size: 356
75947755 GTCGTCTTCT
* * * * *
75947765 TCTTCTAGTAATCTTGCTGGTGGATTGTTTCCTTCGTCGTCACTAGGTGGTTTCTCACCGGCGAA
1 TCTTTTAGTAATCTTTCTGGAGGATTGTCTCC-T--TCGTCACTAGGTGGTTTCTCACCGGCAAA
*
75947830 TGGACTCTCTTCCTCGACGTCTGCTTGTAGTAATCGTTTCTCACCGATGACCCCAATGCCTGCTA
63 TGGACTCTCTTCCTCAACG-CTGCTTGTAGTAATCGTTTCTCACCGATGACCCCAATGCCTGCTA
75947895 GTAATCTTTCTGGAGGACTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTCTCT
127 GTAATCTTTCTGGAGGACTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTCTCT
* * *
75947960 TCCTCAACGTCTTGTAGTAATCGTTCCTCACGGATGAGCTCAATGTCTTTTAATAATCTTTCTGG
192 TCCTCAACATCTTGTAGTAATCGTTCCTCACCGATGACCTCAATGTCTTTTAATAATCTTTCTGG
* * * *
75948025 GGGATTATCTCCTTCATCACTAGGTGGTTTCTCGCCGGCGAATGGACTTTCTTCCTCGACGTCTG
257 AGGATTATCTCCTTCATCACTAGGCGGTTTCTCGCCGGCGAATGGACTCTCTTCCTCGACATCTG
*
75948090 CTTGTAGTAACCGTTTTTCACCGACGACCTCAATG
322 CTTGTAGTAACCGTTTCTCACCGACGACCTCAATG
75948125 TCTTTTAGTAATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCACCGGCAAATGG
1 TCTTTTAGTAATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCACCGGCAAATGG
** * * * **
75948190 ACTCTCTTCCTCAACG-T-CTTGTAGTTTTCGTTTCTTACCGATGACCTCAATGTCTTTTAGTAA
66 ACTCTCTTCCTCAACGCTGCTTGTAGTAATCGTTTCTCACCGATGACCCCAATGCCTGCTAGTAA
* * *
75948253 TCTTTCTGGAGGATTCTCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTTTCTTCCT
131 TCTTTCTGGAGGACTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTCTCTTCCT
** * * *
75948318 CAACATCTTGTAGTTTTCGTTTCTCACCGATGACCTCGATGTCTTTTAGTAATCTTTCTGGAGGA
196 CAACATCTTGTAGTAATCGTTCCTCACCGATGACCTCAATGTCTTTTAATAATCTTTCTGGAGGA
* *
75948383 TTGTCTCCTTCGTCACTAGGCGGTTTCTCGCCGGCGAATGGACTCTCTTCCTCGACATCTGCTTG
261 TTATCTCCTTCATCACTAGGCGGTTTCTCGCCGGCGAATGGACTCTCTTCCTCGACATCTGCTTG
*** * *
75948448 TAGTTTTCGTTTCTCACCGATGACCTCAATT
326 TAGTAACCGTTTCTCACCGACGACCTCAATG
* * * * *
75948479 TCTTTTAGTAATCTTTCTGGGGGCTTATCTCCTTCGTAACTAGGTGGTTTCTCACCGGCAAACGG
1 TCTTTTAGTAATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCACCGGCAAATGG
*
75948544 ACTTTCTTCCTC
66 ACTCTCTTCCTC
75948556 GACATTCTCT
Statistics
Matches: 389, Mismatches: 42, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
354 313 0.80
355 1 0.00
357 46 0.12
359 1 0.00
360 28 0.07
ACGTcount: A:0.16, C:0.26, G:0.20, T:0.37
Consensus pattern (356 bp):
TCTTTTAGTAATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCACCGGCAAATGG
ACTCTCTTCCTCAACGCTGCTTGTAGTAATCGTTTCTCACCGATGACCCCAATGCCTGCTAGTAA
TCTTTCTGGAGGACTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTCTCTTCCT
CAACATCTTGTAGTAATCGTTCCTCACCGATGACCTCAATGTCTTTTAATAATCTTTCTGGAGGA
TTATCTCCTTCATCACTAGGCGGTTTCTCGCCGGCGAATGGACTCTCTTCCTCGACATCTGCTTG
TAGTAACCGTTTCTCACCGACGACCTCAATG
Found at i:75950300 original size:18 final size:18
Alignment explanation
Indices: 75950277--75950330 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
75950267 TCACCACCAA
75950277 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
75950295 CT-C-C-A-CCAC-C-TA
1 CTCCACTAGCCACACTTG
75950307 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
75950325 CTCCAC
1 CTCCAC
75950331 CACCTACTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 3 0.11
13 2 0.07
14 5 0.18
15 2 0.07
16 5 0.18
17 2 0.07
18 9 0.32
ACGTcount: A:0.22, C:0.50, G:0.07, T:0.20
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:75950304 original size:30 final size:30
Alignment explanation
Indices: 75950268--75950365 Score: 169
Period size: 30 Copynumber: 3.3 Consensus size: 30
75950258 TAGCCTTTGT
75950268 CACCACCAACTCCACTAGCCACACTTGCTC
1 CACCACCAACTCCACTAGCCACACTTGCTC
*
75950298 CACCACCTACTCCACTAGCCACACTTGCTC
1 CACCACCAACTCCACTAGCCACACTTGCTC
* *
75950328 CACCACCTACTCCATTAGCCACACTTGCTC
1 CACCACCAACTCCACTAGCCACACTTGCTC
75950358 CACCACCA
1 CACCACCA
75950366 CTTGTACCTA
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 65 1.00
ACGTcount: A:0.26, C:0.50, G:0.06, T:0.18
Consensus pattern (30 bp):
CACCACCAACTCCACTAGCCACACTTGCTC
Found at i:75951043 original size:76 final size:82
Alignment explanation
Indices: 75950925--75951095 Score: 201
Period size: 76 Copynumber: 2.2 Consensus size: 82
75950915 ATATTACGTA
* * * *
75950925 TATATATATTATACTATTTTATGTATATATCTTTAATACTATATTAT-T-TATATTTTTTTTCTA
1 TATATATTTTATACTATATTATGTATATATCTTTAATACTATATTATGTACATATTTTTTTTATA
*
75950988 -C-ATGTTAT-CTTATG
66 TCTATGTTATACATATG
* * * *
75951002 TATATATTTTA-ATTATATTATGTATGTATTTTTTATACTATATTATGTACATATTTTTTTTATA
1 TATATATTTTATACTATATTATGTATATATCTTTAATACTATATTATGTACATATTTTTTTTATA
*
75951066 TCTATTTTATACATATG
66 TCTATGTTATACATATG
*
75951083 TATATATTATATA
1 TATATATTTTATA
75951096 TATCTTAACA
Statistics
Matches: 77, Mismatches: 11, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
76 30 0.39
77 11 0.14
78 13 0.17
79 1 0.01
80 6 0.08
81 15 0.19
82 1 0.01
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.58
Consensus pattern (82 bp):
TATATATTTTATACTATATTATGTATATATCTTTAATACTATATTATGTACATATTTTTTTTATA
TCTATGTTATACATATG
Found at i:75951056 original size:25 final size:25
Alignment explanation
Indices: 75950852--75951060 Score: 135
Period size: 25 Copynumber: 8.4 Consensus size: 25
75950842 TTGTTATTAT
* *
75950852 TATATTTCTTAATATTATATTATGTA
1 TATATTT-TTTATACTATATTATGTA
*
75950878 TATATTCTTTTA-A-TATATTA-G-G
1 TATATT-TTTTATACTATATTATGTA
* ** * *
75950900 TATATTCTAAATTCTATATTACGTA
1 TATATTTTTTATACTATATTATGTA
* * *
75950925 TATATATATTATACTATTTTATGTA
1 TATATTTTTTATACTATATTATGTA
* * *
75950950 TATATCTTTAATACTATATTATTTA
1 TATATTTTTTATACTATATTATGTA
* * *
75950975 TATTTTTTTTCTACATGTTATCTTATGTA
1 TATATTTTTTATAC----TATATTATGTA
*
75951004 TATA--TTTTA-ATTATATTATGTA
1 TATATTTTTTATACTATATTATGTA
*
75951026 TGTATTTTTTATACTATATTATGTA
1 TATATTTTTTATACTATATTATGTA
*
75951051 CATATTTTTT
1 TATATTTTTT
75951061 TTATATCTAT
Statistics
Matches: 137, Mismatches: 34, Indels: 25
0.70 0.17 0.13
Matches are distributed among these distances:
21 2 0.01
22 19 0.14
23 8 0.06
24 13 0.09
25 68 0.50
26 10 0.07
27 5 0.04
29 12 0.09
ACGTcount: A:0.32, C:0.06, G:0.05, T:0.57
Consensus pattern (25 bp):
TATATTTTTTATACTATATTATGTA
Found at i:75951071 original size:26 final size:27
Alignment explanation
Indices: 75951030--75951081 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
75951020 TATGTATGTA
*
75951030 TTTTTTATACTATATTATGTACATATT
1 TTTTTTATACTATATTATATACATATT
75951057 TTTTTTATATCTAT-TT-TATACATAT
1 TTTTTTATA-CTATATTATATACATAT
75951082 GTATATATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 8 0.35
27 11 0.48
28 4 0.17
ACGTcount: A:0.29, C:0.08, G:0.02, T:0.62
Consensus pattern (27 bp):
TTTTTTATACTATATTATATACATATT
Found at i:75951150 original size:25 final size:24
Alignment explanation
Indices: 75951122--75951177 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
75951112 GTTATATTTT
*
75951122 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
75951147 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
75951170 CACTATTA
1 CACTATTA
75951178 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:75953356 original size:40 final size:40
Alignment explanation
Indices: 75953285--75953362 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
75953275 TTTCATCAAA
* **
75953285 AATTTTACAGTTCAATGCAGTATACGTAACAATATTCAGT
1 AATTTCACAGTTCAATGCAGTATACAAAACAATATTCAGT
* * *
75953325 AATTTCACAGTTCAATTCGGTATTCAAAACAATATTCA
1 AATTTCACAGTTCAATGCAGTATACAAAACAATATTCA
75953363 ATATCCCATA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (40 bp):
AATTTCACAGTTCAATGCAGTATACAAAACAATATTCAGT
Found at i:75954348 original size:14 final size:14
Alignment explanation
Indices: 75954329--75954356 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
75954319 TATAATATCA
75954329 ATTAAATATTTATT
1 ATTAAATATTTATT
75954343 ATTAAATATTTATT
1 ATTAAATATTTATT
75954357 TAATAACAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
ATTAAATATTTATT
Found at i:75954460 original size:18 final size:18
Alignment explanation
Indices: 75954378--75954528 Score: 101
Period size: 18 Copynumber: 8.4 Consensus size: 18
75954368 ATGACAATTA
*
75954378 AGTTATTCAGTAATAGTC
1 AGTTATTCAGTAACAGTC
* * *
75954396 A-TTCATTCAATGACAATC
1 AGTT-ATTCAGTAACAGTC
* *
75954414 AGTTATTCAATAA-TGATC
1 AGTTATTCAGTAACAG-TC
* * * *
75954432 AATTATCCAGTAATATTC
1 AGTTATTCAGTAACAGTC
75954450 AGTTATTCAGTAACAGTC
1 AGTTATTCAGTAACAGTC
*
75954468 TA-ATATTCAGTAACAGTC
1 -AGTTATTCAGTAACAGTC
* * *
75954486 AATTATCCGGTAACAGTC
1 AGTTATTCAGTAACAGTC
* * *
75954504 AATTATTCAGTAATAATC
1 AGTTATTCAGTAACAGTC
75954522 AGTTATT
1 AGTTATT
75954529 TTATACCTTT
Statistics
Matches: 102, Mismatches: 25, Indels: 12
0.73 0.18 0.09
Matches are distributed among these distances:
17 3 0.03
18 96 0.94
19 3 0.03
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.36
Consensus pattern (18 bp):
AGTTATTCAGTAACAGTC
Found at i:75954479 original size:36 final size:36
Alignment explanation
Indices: 75954378--75954528 Score: 137
Period size: 36 Copynumber: 4.2 Consensus size: 36
75954368 ATGACAATTA
* * * *
75954378 AGTTATTCAGTAATAGTC-ATTCATTCAATGACAATC
1 AGTTATTCAGTAACAGTCAATT-ATTCAGTAATAATC
* * * *
75954414 AGTTATTCAATAA-TGATCAATTATCCAGTAATATTC
1 AGTTATTCAGTAACAG-TCAATTATTCAGTAATAATC
* *
75954450 AGTTATTCAGTAACAGTCTAA-TATTCAGTAACAGTC
1 AGTTATTCAGTAACAGTC-AATTATTCAGTAATAATC
* * *
75954486 AATTATCCGGTAACAGTCAATTATTCAGTAATAATC
1 AGTTATTCAGTAACAGTCAATTATTCAGTAATAATC
75954522 AGTTATT
1 AGTTATT
75954529 TTATACCTTT
Statistics
Matches: 91, Mismatches: 19, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
35 3 0.03
36 82 0.90
37 6 0.07
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.36
Consensus pattern (36 bp):
AGTTATTCAGTAACAGTCAATTATTCAGTAATAATC
Found at i:75954762 original size:12 final size:12
Alignment explanation
Indices: 75954745--75954769 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
75954735 AGTGCCGAAT
75954745 CGGTAACAGTAA
1 CGGTAACAGTAA
75954757 CGGTAACAGTAA
1 CGGTAACAGTAA
75954769 C
1 C
75954770 CAATAAAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:75956394 original size:5 final size:5
Alignment explanation
Indices: 75956386--75956417 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
75956376 TTTAGTTTAT
75956386 ATATA ATATA ATATA ATATA ATATA ATATA AT
1 ATATA ATATA ATATA ATATA ATATA ATATA AT
75956418 TAAAACATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:75957807 original size:6 final size:6
Alignment explanation
Indices: 75957798--75957824 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
75957788 CACCGTAAAG
75957798 GTAACA GTAACA GTAACA GTAACA GTA
1 GTAACA GTAACA GTAACA GTAACA GTA
75957825 GCGGTACACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:75963316 original size:3 final size:3
Alignment explanation
Indices: 75963310--75963334 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
75963300 GGTGTCTATA
75963310 TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT T
75963335 GTTTGGTCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:75968163 original size:51 final size:51
Alignment explanation
Indices: 75968097--75968334 Score: 318
Period size: 51 Copynumber: 4.7 Consensus size: 51
75968087 TTCCCTTGCA
* * *
75968097 GCTGCTGATGGCTCCCCTGTTTCAGCCATTGAAGATGATTCCTTCCCTTTT
1 GCTGATGATGACTCCCCTGTTTCAGCCATTGAAGATGATTCTTTCCCTTTT
* * *
75968148 GTTGATGATGACTCCCCTGTTTCAGCCATAGAAGATGGTTCTTTCCCTTTT
1 GCTGATGATGACTCCCCTGTTTCAGCCATTGAAGATGATTCTTTCCCTTTT
* * *
75968199 GCTGATGATGACTCCCCTGTTTCAGCCATAGAATATGGTTCTTTCCCTTTT
1 GCTGATGATGACTCCCCTGTTTCAGCCATTGAAGATGATTCTTTCCCTTTT
* * * *
75968250 GCTGCTGATGACTCCCATGTTTCAGCCATTGAAGAT-AGTTTTTTCCCTTGT
1 GCTGATGATGACTCCCCTGTTTCAGCCATTGAAGATGA-TTCTTTCCCTTTT
* *
75968301 GCTGAAGATGACTCCCCTTTTTCAGCC-TTGAAGA
1 GCTGATGATGACTCCCCTGTTTCAGCCATTGAAGA
75968335 AAGAAAAAGA
Statistics
Matches: 167, Mismatches: 19, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
50 7 0.04
51 160 0.96
ACGTcount: A:0.18, C:0.26, G:0.19, T:0.37
Consensus pattern (51 bp):
GCTGATGATGACTCCCCTGTTTCAGCCATTGAAGATGATTCTTTCCCTTTT
Found at i:75969863 original size:18 final size:19
Alignment explanation
Indices: 75969842--75969887 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
75969832 ATTAATTTTG
75969842 ATTTTTTAATTATTAAA-T
1 ATTTTTTAATTATTAAATT
*
75969860 ATTTTATT-ATTTTTAAATT
1 ATTTT-TTAATTATTAAATT
*
75969879 ATTTATTAA
1 ATTTTTTAA
75969888 CATGACATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
18 15 0.65
19 8 0.35
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (19 bp):
ATTTTTTAATTATTAAATT
Found at i:75971801 original size:51 final size:52
Alignment explanation
Indices: 75971732--75972227 Score: 483
Period size: 51 Copynumber: 9.7 Consensus size: 52
75971722 TGATGATGAA
* *
75971732 TCCCCTGTTTCAGCCATTGAAGATTGTTCTTTCCCGT-TTGCTGCTGGTGAC
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCCCCTGTTGCTGCTGGTGAC
* * * * *
75971783 TTCCCTTTTTCAGTCATTGAAGATGGTTC-TTCCCCTGCTGCCGCTGGTGAC
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCCCCTGTTGCTGCTGGTGAC
* ** *
75971834 TCCCCTGTTTCAGCCATTGAAGATGGATCTTT-CCCTGTTGCTAATGATGAC
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCCCCTGTTGCTGCTGGTGAC
* * *** *
75971885 TTCCCTGTTTTAGCCATTGAAGATGGTTC-TTCCCCTGCCACTGCCGGTGAC
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCCCCTGTTGCTGCTGGTGAC
* * * ** **
75971936 TCCCCTGTTTCAGCTATTGAAGATGGTTCTTT-CTCTTTTGCTAATAATGAC
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCCCCTGTTGCTGCTGGTGAC
* ** *
75971987 TCCCCTGTTTCAGTCATTGAAGATGGTTC-TTCCCCTGCCGCTGCCGGTGAC
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCCCCTGTTGCTGCTGGTGAC
* * * ** *
75972038 TCCCCTGTTTCAGCCATTGAATATGGTTCTGTT--TCTTTTGCTAATGATGAC
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCT-TTCCCCTGTTGCTGCTGGTGAC
* * ** ** *
75972089 TCCCCTGTTTCATCTATTGAAGATGGTTC-TTCCCCTGAAGCTGCCAGTGAA
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCCCCTGTTGCTGCTGGTGAC
* * ** *
75972140 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTT-CTCTTTTGCTAATGATGAC
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCCCCTGTTGCTGCTGGTGAC
*
75972191 TCCCCTGTTTCAGCCATTGAAGATGGCTC-TTCCCCTG
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCCCCTG
75972228 ACGCTTTCTT
Statistics
Matches: 346, Mismatches: 88, Indels: 22
0.76 0.19 0.05
Matches are distributed among these distances:
49 2 0.01
50 12 0.03
51 324 0.94
52 6 0.02
53 2 0.01
ACGTcount: A:0.16, C:0.27, G:0.20, T:0.37
Consensus pattern (52 bp):
TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCCCCTGTTGCTGCTGGTGAC
Found at i:75971865 original size:102 final size:102
Alignment explanation
Indices: 75971732--75972232 Score: 718
Period size: 102 Copynumber: 4.9 Consensus size: 102
75971722 TGATGATGAA
* * * ** * * *
75971732 TCCCCTGTTTCAGCCATTGAAGATTGTTCTTTCCCGTTTGCTGCTGGTGACTTCCCTTTTTCAGT
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCTCTTTTGCTAATGATGACTCCCCTGTTTCAGT
* * *
75971797 CATTGAAGATGGTTCTTCCCCTGCTGCCGCTGGTGAC
66 CATTGAAGATGGTTCTTCCCCTGCCGCTGCCGGTGAC
* * * * * *
75971834 TCCCCTGTTTCAGCCATTGAAGATGGATCTTTCCCTGTTGCTAATGATGACTTCCCTGTTTTAGC
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCTCTTTTGCTAATGATGACTCCCCTGTTTCAGT
*
75971899 CATTGAAGATGGTTCTTCCCCTGCCACTGCCGGTGAC
66 CATTGAAGATGGTTCTTCCCCTGCCGCTGCCGGTGAC
* *
75971936 TCCCCTGTTTCAGCTATTGAAGATGGTTCTTTCTCTTTTGCTAATAATGACTCCCCTGTTTCAGT
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCTCTTTTGCTAATGATGACTCCCCTGTTTCAGT
75972001 CATTGAAGATGGTTCTTCCCCTGCCGCTGCCGGTGAC
66 CATTGAAGATGGTTCTTCCCCTGCCGCTGCCGGTGAC
*
75972038 TCCCCTGTTTCAGCCATTGAATATGGTTCTGTT-TCTTTTGCTAATGATGACTCCCCTGTTTCA-
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCT-TTCTCTTTTGCTAATGATGACTCCCCTGTTTCAG
** * *
75972101 TCTATTGAAGATGGTTCTTCCCCTGAAGCTGCCAGTGAA
65 TC-ATTGAAGATGGTTCTTCCCCTGCCGCTGCCGGTGAC
*
75972140 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCTCTTTTGCTAATGATGACTCCCCTGTTTCAGC
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCTCTTTTGCTAATGATGACTCCCCTGTTTCAGT
* *
75972205 CATTGAAGATGGCTCTTCCCCTGACGCT
66 CATTGAAGATGGTTCTTCCCCTGCCGCT
75972233 TTCTTTCCCT
Statistics
Matches: 361, Mismatches: 34, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
101 4 0.01
102 354 0.98
103 3 0.01
ACGTcount: A:0.16, C:0.28, G:0.20, T:0.37
Consensus pattern (102 bp):
TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCTCTTTTGCTAATGATGACTCCCCTGTTTCAGT
CATTGAAGATGGTTCTTCCCCTGCCGCTGCCGGTGAC
Found at i:75973939 original size:12 final size:12
Alignment explanation
Indices: 75973922--75973947 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
75973912 AGTCCAGGTA
75973922 AACCATTCCATG
1 AACCATTCCATG
75973934 AACCATTCCATG
1 AACCATTCCATG
75973946 AA
1 AA
75973948 TTCCATATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.31, G:0.08, T:0.23
Consensus pattern (12 bp):
AACCATTCCATG
Done.