Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 245 of 250
Found at i:75977406 original size:46 final size:46
Alignment explanation
Indices: 75977354--75977673 Score: 408
Period size: 46 Copynumber: 7.0 Consensus size: 46
75977344 AGTGTGCTCT
*
75977354 CTGATATGAAATGTGTAAGACCATGATTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
75977400 CTGATATGAAATGTGTAAGACCATGGTTGAAAAATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
75977446 CTGATATGAAATATGTAAAACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
** *
75977492 CTGATATGAAATGAATAAGACGATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** ** * *
75977538 ATGACGGGAAATGAATAAGATCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
75977584 GTGACATGAAATGTGTAAGACCATGGTTGAAAAATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
75977630 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
75977674 TCATGTCAAA
Statistics
Matches: 242, Mismatches: 31, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
45 1 0.00
46 241 1.00
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:75977979 original size:16 final size:17
Alignment explanation
Indices: 75977958--75977990 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
75977948 ATGATGGTGC
75977958 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
75977974 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
75977991 TATATACTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:75986989 original size:70 final size:71
Alignment explanation
Indices: 75986861--75986993 Score: 191
Period size: 70 Copynumber: 1.9 Consensus size: 71
75986851 CTGTATGAAC
* * * *
75986861 TAATTAGACCACGATCCGGGATATGGGACGGGGGTTATGGATGTTAGGATCTGAGCTTAAACTGC
1 TAATTAGACCAAGATCCGGGATATGGGACAGGGGTTACGGATGTTAGGATCTAAGCTTAAACTGC
75986926 AGGAAT
66 AGGAAT
75986932 TAATTAGACCATAG-TCCGGGATATGGGA-AGGGGTTACGGATGTTAGGAT-TCAAGCTTAAACT
1 TAATTAGACCA-AGATCCGGGATATGGGACAGGGGTTACGGATGTTAGGATCT-AAGCTTAAACT
75986994 TGTCAGATGC
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
69 1 0.02
70 29 0.52
71 25 0.45
72 1 0.02
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.26
Consensus pattern (71 bp):
TAATTAGACCAAGATCCGGGATATGGGACAGGGGTTACGGATGTTAGGATCTAAGCTTAAACTGC
AGGAAT
Found at i:75990614 original size:46 final size:46
Alignment explanation
Indices: 75990547--75990640 Score: 188
Period size: 46 Copynumber: 2.0 Consensus size: 46
75990537 AGAAACATAG
75990547 TCTGAAGCACAATTCATTGTTGACTTATAGGCATTGAATGCATAAT
1 TCTGAAGCACAATTCATTGTTGACTTATAGGCATTGAATGCATAAT
75990593 TCTGAAGCACAATTCATTGTTGACTTATAGGCATTGAATGCATAAT
1 TCTGAAGCACAATTCATTGTTGACTTATAGGCATTGAATGCATAAT
75990639 TC
1 TC
75990641 ATTGTTCATT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (46 bp):
TCTGAAGCACAATTCATTGTTGACTTATAGGCATTGAATGCATAAT
Found at i:75991609 original size:31 final size:31
Alignment explanation
Indices: 75991569--75991645 Score: 102
Period size: 31 Copynumber: 2.5 Consensus size: 31
75991559 TTAAAAAGAA
*
75991569 TTAAA-AGTTTAATGACTTAAATAAAAAATT
1 TTAAATAGTTTAATGACTTAAACAAAAAATT
* *
75991599 TTAAATAGTTTAATGACTTCAACGAAAAATT
1 TTAAATAGTTTAATGACTTAAACAAAAAATT
* *
75991630 TCAAATAATTTAATGA
1 TTAAATAGTTTAATGA
75991646 TAATTTTATA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
30 5 0.12
31 36 0.88
ACGTcount: A:0.49, C:0.06, G:0.08, T:0.36
Consensus pattern (31 bp):
TTAAATAGTTTAATGACTTAAACAAAAAATT
Found at i:75996868 original size:31 final size:31
Alignment explanation
Indices: 75996833--75996943 Score: 161
Period size: 31 Copynumber: 3.6 Consensus size: 31
75996823 GAGTTACCAT
*
75996833 TTTTCACTGATCAGGTAGCCGGACCTATCAC
1 TTTTCACTGATCAGGTAGCCGGAACTATCAC
*
75996864 TTTTCATTGATCAGGTAGCCGGAACTATCAC
1 TTTTCACTGATCAGGTAGCCGGAACTATCAC
**
75996895 TTTTCACTGATCAGGTAG-CAAAAGCTATCAC
1 TTTTCACTGATCAGGTAGCCGGAA-CTATCAC
*
75996926 TTTTCACTGATCAAGTAG
1 TTTTCACTGATCAGGTAG
75996944 TTAAAGTTAC
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
30 3 0.04
31 70 0.96
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (31 bp):
TTTTCACTGATCAGGTAGCCGGAACTATCAC
Found at i:75996958 original size:31 final size:31
Alignment explanation
Indices: 75996792--75996962 Score: 103
Period size: 31 Copynumber: 5.5 Consensus size: 31
75996782 CTTGTAGCCG
* * **
75996792 AAGCTACCACTATTCACTGATC-AGATGGCTG
1 AAGCTACCACTTTTCACTGATCAAG-TAGCAA
* * * * **
75996823 GAGTTACCATTTTTCACTGATCAGGTAGCCG
1 AAGCTACCACTTTTCACTGATCAAGTAGCAA
* * * * * **
75996854 GACCTATCACTTTTCATTGATCAGGTAGCCGG
1 AAGCTACCACTTTTCACTGATCAAGTAG-CAA
* *
75996886 AA-CTATCACTTTTCACTGATCAGGTAGCAA
1 AAGCTACCACTTTTCACTGATCAAGTAGCAA
* **
75996916 AAGCTATCACTTTTCACTGATCAAGTAGTTA
1 AAGCTACCACTTTTCACTGATCAAGTAGCAA
*
75996947 AAGTTACCACTTTTCA
1 AAGCTACCACTTTTCA
75996963 TTTGTCATTT
Statistics
Matches: 115, Mismatches: 22, Indels: 6
0.80 0.15 0.04
Matches are distributed among these distances:
30 3 0.03
31 108 0.94
32 4 0.03
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (31 bp):
AAGCTACCACTTTTCACTGATCAAGTAGCAA
Found at i:75996958 original size:62 final size:63
Alignment explanation
Indices: 75996824--75996962 Score: 156
Period size: 62 Copynumber: 2.2 Consensus size: 63
75996814 AGATGGCTGG
* *** * * *
75996824 AGTTACCATTTTTCACTGATCAGGTAGCCGGACCTATCACTTTTCATTGATCAGGTAGCCGGA
1 AGTTACCACTTTTCACTGATCAGGTAGCAAAACCTATCACTTTTCACTGATCAAGTAGCCGAA
* * * **
75996887 A-CTATCACTTTTCACTGATCAGGTAGCAAAAGCTATCACTTTTCACTGATCAAGTAG-TTAA
1 AGTTACCACTTTTCACTGATCAGGTAGCAAAACCTATCACTTTTCACTGATCAAGTAGCCGAA
75996948 AGTTACCACTTTTCA
1 AGTTACCACTTTTCA
75996963 TTTGTCATTT
Statistics
Matches: 61, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
61 2 0.03
62 58 0.95
63 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (63 bp):
AGTTACCACTTTTCACTGATCAGGTAGCAAAACCTATCACTTTTCACTGATCAAGTAGCCGAA
Found at i:75996972 original size:7 final size:7
Alignment explanation
Indices: 75996960--75996985 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
75996950 TTACCACTTT
75996960 TCATTTG
1 TCATTTG
75996967 TCATTTG
1 TCATTTG
75996974 TCATTTG
1 TCATTTG
75996981 TCATT
1 TCATT
75996986 GATCAGATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.15, G:0.12, T:0.58
Consensus pattern (7 bp):
TCATTTG
Found at i:76004305 original size:20 final size:21
Alignment explanation
Indices: 76004280--76004324 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
76004270 TAATAATAAA
76004280 TTTAG-TTTTTGTTTTGTAAT
1 TTTAGTTTTTTGTTTTGTAAT
*
76004300 TTTAGTTTTTTTTTTTGTAAT
1 TTTAGTTTTTTGTTTTGTAAT
76004321 TTTA
1 TTTA
76004325 TTATTATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.16, C:0.00, G:0.11, T:0.73
Consensus pattern (21 bp):
TTTAGTTTTTTGTTTTGTAAT
Found at i:76004334 original size:21 final size:21
Alignment explanation
Indices: 76004280--76004334 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
76004270 TAATAATAAA
*
76004280 TTTAGTTTT-TGTTTTGTAAT
1 TTTAGTTTTATTTTTTGTAAT
*
76004300 TTTAGTTTTTTTTTTTGTAAT
1 TTTAGTTTTATTTTTTGTAAT
76004321 TTTA-TTATTATTTT
1 TTTAGTT-TTATTTT
76004335 GACTCTCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
20 11 0.35
21 20 0.65
ACGTcount: A:0.16, C:0.00, G:0.09, T:0.75
Consensus pattern (21 bp):
TTTAGTTTTATTTTTTGTAAT
Found at i:76007168 original size:14 final size:17
Alignment explanation
Indices: 76007137--76007173 Score: 53
Period size: 14 Copynumber: 2.4 Consensus size: 17
76007127 ATTATAAAGG
76007137 ATATTATTAAATTAATT
1 ATATTATTAAATTAATT
76007154 ATATTA-TAAA-T-ATT
1 ATATTATTAAATTAATT
76007168 ATATTA
1 ATATTA
76007174 AGAAATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 9 0.45
15 1 0.05
16 4 0.20
17 6 0.30
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATATTATTAAATTAATT
Found at i:76007349 original size:14 final size:14
Alignment explanation
Indices: 76007323--76007373 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
76007313 GAAAACAAAA
76007323 GAAATAAAATAAAG
1 GAAATAAAATAAAG
*
76007337 GAAATAAAGTAAAG
1 GAAATAAAATAAAG
* * *
76007351 TAAGTTAAAATAAAA
1 GAA-ATAAAATAAAG
76007366 G-AATAAAA
1 GAAATAAAA
76007374 GAAACAGAAT
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
13 5 0.17
14 16 0.55
15 8 0.28
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.18
Consensus pattern (14 bp):
GAAATAAAATAAAG
Found at i:76011412 original size:3 final size:3
Alignment explanation
Indices: 76011307--76011400 Score: 84
Period size: 3 Copynumber: 31.3 Consensus size: 3
76011297 AGGTATAAAT
* * * * * * *
76011307 ATA ATG ATA GTA ATA ATA ATA GTA GTA ATA ATA CTA ACA ATA ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
76011355 A-A GATA ATA ATA GTAA ATA ATA ATA ATA ATA ATA ATA ATA A-A ATA
1 ATA -ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
76011400 A
1 A
76011401 ACAAAATAAT
Statistics
Matches: 73, Mismatches: 14, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
2 3 0.04
3 67 0.92
4 3 0.04
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:76013089 original size:87 final size:87
Alignment explanation
Indices: 76012984--76013353 Score: 206
Period size: 87 Copynumber: 4.3 Consensus size: 87
76012974 GACCTACTCT
* * * * * *
76012984 GCTGTAACCTCAGAGAGATAAGATC-CTTTATTTTAATCCACTCCACTGTAACTTCAGGGAGATA
1 GCTGTAATCTCAGGGAGATAAGATCTC-TGACTTCAATCCACTCCACTGTAACCTCAGGGAGATA
* *
76013048 GGATAGTG-TCTTCGATCTGCTCC
65 AGAT-CTGATCTTCGATCTGCTCC
* **
76013071 GCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAA
1 GCTGTAATCTCAGGGAGATAAGATCTCTGACTTCAATCCACTCCACTGTAACCTCAGGGAGATAA
* * *
76013136 GATCTGAAATTCTTTGGTCTGTTCC
66 GATCTG--A-TCTTCGATCTGCTCC
* * ** * * **
76013161 ACTGTAATCTCAGGGAGATAAGA-C-CTGA-TAT-GATCTTCTCTACTGTAACTTCAGATAGATA
1 GCTGTAATCTCAGGGAGATAAGATCTCTGACT-TCAATCCACTCCACTGTAACCTCAGGGAGATA
** *
76013222 AGATC----CTTTAATCCGCTCC
65 AGATCTGATCTTCGATCTGCTCC
** * * ** ** * *
76013241 ATTGTAATCTCAAGGAGATAGGAT-TACT-ATCTTTGATCTGCTCCGCTGTAATCTCAGGGAGAT
1 GCTGTAATCTCAGGGAGATAAGATCT-CTGA-CTTCAATCCACTCCACTGTAACCTCAGGGAGAT
* * *
76013304 AAGATCTGAAATTCTTTGGTCTGTTCC
64 AAGATCTG--A-TCTTCGATCTGCTCC
*
76013331 ACTGTAATCTCAGGGAGATAAGA
1 GCTGTAATCTCAGGGAGATAAGA
76013354 CCTGTATTAT
Statistics
Matches: 221, Mismatches: 43, Indels: 35
0.74 0.14 0.12
Matches are distributed among these distances:
80 30 0.14
81 1 0.00
82 3 0.01
83 29 0.13
86 2 0.01
87 86 0.39
88 5 0.02
89 1 0.00
90 64 0.29
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (87 bp):
GCTGTAATCTCAGGGAGATAAGATCTCTGACTTCAATCCACTCCACTGTAACCTCAGGGAGATAA
GATCTGATCTTCGATCTGCTCC
Found at i:76013176 original size:46 final size:45
Alignment explanation
Indices: 76013024--76013353 Score: 230
Period size: 44 Copynumber: 7.6 Consensus size: 45
76013014 TTTTAATCCA
* * *
76013024 CTCCACTGTAA-CTTCAGGGAGATAGGA--T-AGTGTCTTCGATCTG
1 CTCCACTGTAATC-TCAGGGAGATAAGATCTGAAT-TCTTTGATCTG
* * * **
76013067 CTCCGCTGTAATCTCAGGGAGATAAGATCT--CTGGCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTGAAT-TCTTTGATCTG
* *
76013111 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTTGGTCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTG-AATTCTTTGATCTG
* * * *
76013157 TTCCACTGTAATCTCAGGGAGATAAGACCTG-A---TATGATCTT
1 CTCCACTGTAATCTCAGGGAGATAAGATCTGAATTCTTTGATCTG
* ** * *
76013198 CTCTACTGTAA-CTTCAGATAGATAAGATC------CTTTAATCCG
1 CTCCACTGTAATC-TCAGGGAGATAAGATCTGAATTCTTTGATCTG
* * * *
76013237 CTCCATTGTAATCTCAAGGAGATAGGAT-T-ACTATCTTTGATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTGAAT-TCTTTGATCTG
* *
76013281 CTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTTGGTCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTG-AATTCTTTGATCTG
*
76013327 TTCCACTGTAATCTCAGGGAGATAAGA
1 CTCCACTGTAATCTCAGGGAGATAAGA
76013354 CCTGTATTAT
Statistics
Matches: 226, Mismatches: 43, Indels: 33
0.75 0.14 0.11
Matches are distributed among these distances:
39 25 0.11
40 2 0.01
41 28 0.12
43 23 0.10
44 73 0.32
45 2 0.01
46 70 0.31
47 3 0.01
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.32
Consensus pattern (45 bp):
CTCCACTGTAATCTCAGGGAGATAAGATCTGAATTCTTTGATCTG
Found at i:76026012 original size:3 final size:3
Alignment explanation
Indices: 76025907--76026000 Score: 84
Period size: 3 Copynumber: 31.3 Consensus size: 3
76025897 AGGTATAAAT
* * * * * * *
76025907 ATA ATG ATA GTA ATA ATA ATA GTA GTA ATA ATA CTA ACA ATA ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
76025955 A-A GATA ATA ATA GTAA ATA ATA ATA ATA ATA ATA ATA ATA A-A ATA
1 ATA -ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
76026000 A
1 A
76026001 ACAAAATAAT
Statistics
Matches: 73, Mismatches: 14, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
2 3 0.04
3 67 0.92
4 3 0.04
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:76030372 original size:14 final size:17
Alignment explanation
Indices: 76030341--76030377 Score: 53
Period size: 14 Copynumber: 2.4 Consensus size: 17
76030331 ATTATAAAGG
76030341 ATATTATTAAATTAATT
1 ATATTATTAAATTAATT
76030358 ATATTA-TAAA-T-ATT
1 ATATTATTAAATTAATT
76030372 ATATTA
1 ATATTA
76030378 AGAAATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 9 0.45
15 1 0.05
16 4 0.20
17 6 0.30
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATATTATTAAATTAATT
Found at i:76030545 original size:14 final size:14
Alignment explanation
Indices: 76030526--76030576 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
76030516 AGAAACCAAA
76030526 GAAATAAAATAAAG
1 GAAATAAAATAAAG
*
76030540 GAAATAAAGTAAAG
1 GAAATAAAATAAAG
* * *
76030554 TAAGTTAAAATAAAA
1 GAA-ATAAAATAAAG
76030569 G-AATAAAA
1 GAAATAAAA
76030577 GAAACAGAAT
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
13 5 0.17
14 16 0.55
15 8 0.28
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.18
Consensus pattern (14 bp):
GAAATAAAATAAAG
Found at i:76031319 original size:17 final size:16
Alignment explanation
Indices: 76031281--76031320 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
76031271 GGTAAGTATA
76031281 ATATTAGTATTAATTT
1 ATATTAGTATTAATTT
*
76031297 ATTATTAGTATTATTATT
1 A-TATTAGTATTAAT-TT
76031315 ATATTA
1 ATATTA
76031321 TGAGTGGGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 17 0.81
18 3 0.14
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (16 bp):
ATATTAGTATTAATTT
Found at i:76031517 original size:23 final size:24
Alignment explanation
Indices: 76031465--76031531 Score: 59
Period size: 23 Copynumber: 2.8 Consensus size: 24
76031455 GTGAATTTGT
*
76031465 GAAATAATT-ATTG-ATTGAAGGTG
1 GAAA-AATTGATTGAATTGAAAGTG
76031488 GAAAAA-TGATTGAATTGAAAGTG
1 GAAAAATTGATTGAATTGAAAGTG
* *
76031511 TAGAAATTGTGATTGAATTGA
1 GA-AAAAT-TGATTGAATTGA
76031532 GAATATATGT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
21 1 0.03
22 6 0.17
23 14 0.39
24 3 0.08
26 12 0.33
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (24 bp):
GAAAAATTGATTGAATTGAAAGTG
Found at i:76031734 original size:37 final size:39
Alignment explanation
Indices: 76031675--76031770 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
76031665 CGGATAGATT
* * * *
76031675 CGATGAGGTACTGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
76031712 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
76031751 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
76031771 TTCTGGTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 24 0.50
40 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:76032731 original size:22 final size:24
Alignment explanation
Indices: 76032706--76032751 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
76032696 TAGTTGGAAG
76032706 TTTAGT-ATTGT-TTTTATTAAGA
1 TTTAGTCATTGTATTTTATTAAGA
* *
76032728 TTTAGTCTTTTTATTTTATTAAGA
1 TTTAGTCATTGTATTTTATTAAGA
76032752 CTTCTAGCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 6 0.30
23 3 0.15
24 11 0.55
ACGTcount: A:0.26, C:0.02, G:0.11, T:0.61
Consensus pattern (24 bp):
TTTAGTCATTGTATTTTATTAAGA
Found at i:76035617 original size:57 final size:55
Alignment explanation
Indices: 76035547--76035741 Score: 203
Period size: 57 Copynumber: 3.4 Consensus size: 55
76035537 CCTCAAATCC
* * * *
76035547 AACAATCGAGCTTGATTTTCCCTTTTTTGCCATTTTCCCCGGATCCTCAAATCCATT
1 AACAACCGAACTTGA-TTTCCCTTTTTTGCCATTTT-CCCGGATCCTCAAACCCGTT
* ** * *
76035604 AACAACCGAGCTTGATTTTCCCTTTTTAACCCATTTTCCTGGATCCTCCAACCCGTT
1 AACAACCGAACTTGA-TTTCCCTTTTT-TGCCATTTTCCCGGATCCTCAAACCCGTT
* * *
76035661 AACAACCGAACTTGATTTCGCC-TTTTTGACCCATTTTCCTGAATCCTCCAACCCGTT
1 AACAACCGAACTTGATTTC-CCTTTTTTG--CCATTTTCCCGGATCCTCAAACCCGTT
*
76035718 AACAACCGAACTTGACTTCCCTTT
1 AACAACCGAACTTGATTTCCCTTT
76035742 GTTAGTATTA
Statistics
Matches: 121, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
56 10 0.08
57 104 0.86
58 7 0.06
ACGTcount: A:0.23, C:0.32, G:0.10, T:0.35
Consensus pattern (55 bp):
AACAACCGAACTTGATTTCCCTTTTTTGCCATTTTCCCGGATCCTCAAACCCGTT
Found at i:76042150 original size:27 final size:27
Alignment explanation
Indices: 76042117--76042168 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
76042107 TTAAAAAAAT
76042117 ATTTTTAATAA-CTTTTATACATTTTAA
1 ATTTTT-ATAATCTTTTATACATTTTAA
*
76042144 ATTTTTATAATCTTTTATATATTTT
1 ATTTTTATAATCTTTTATACATTTT
76042169 TTAGAATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.62
Consensus pattern (27 bp):
ATTTTTATAATCTTTTATACATTTTAA
Found at i:76042161 original size:10 final size:9
Alignment explanation
Indices: 76042117--76042180 Score: 51
Period size: 9 Copynumber: 6.8 Consensus size: 9
76042107 TTAAAAAAAT
76042117 ATTTTTAATA
1 ATTTTT-ATA
*
76042127 ACTTTTATA
1 ATTTTTATA
76042136 CA-TTTTA-A
1 -ATTTTTATA
76042144 ATTTTTATA
1 ATTTTTATA
76042153 ATCTTTTATA
1 AT-TTTTATA
*
76042163 TATTTTTTAGA
1 -A-TTTTTATA
76042174 ATTTTTA
1 ATTTTTA
76042181 ACTTTTTTAA
Statistics
Matches: 46, Mismatches: 2, Indels: 13
0.75 0.03 0.21
Matches are distributed among these distances:
7 1 0.02
8 6 0.13
9 17 0.37
10 14 0.30
11 7 0.15
12 1 0.02
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.61
Consensus pattern (9 bp):
ATTTTTATA
Found at i:76070305 original size:4 final size:4
Alignment explanation
Indices: 76070296--76070325 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
76070286 TACAAATGAA
*
76070296 ATAC ATAC ATAC AAAC ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
76070326 GCATGTATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.53, C:0.23, G:0.00, T:0.23
Consensus pattern (4 bp):
ATAC
Found at i:76070656 original size:189 final size:185
Alignment explanation
Indices: 76070331--76070707 Score: 542
Period size: 189 Copynumber: 2.0 Consensus size: 185
76070321 TACATGCATG
* *
76070331 TATGTATTTAGTTATAATAAGCACTGAAATTTCATGGAATTATTATTGCAGTGAATAGATAGCCA
1 TATGTATATAGTTATAATAAGCACTGAAATTTCATGGAATTACTATTGCAGTGAATAGATAGCCA
* * * * * *
76070396 TGTTTATCTCTTATATGCCTTCAATTGAATACATTCAAGCAAAGACTTGTTAAATGGCCTAATTA
66 TGTTTAGCTATTACATGCCTTCAATTCAACACATTCAAGCAAAGACTAGTTAAATGGCCTAATTA
* *
76070461 CACTTTTAG-CATCTCCTAAACGTTAATAATTCAATTTAATCCGTTTTAGCTCCTT
131 CACTTTTAGCCA-CTCCTAAACCTTAATAATTCAATTTAATCCCTTTTAGCTCCTT
* * *
76070516 TATGTATATAGTTATAATAAGCCCTGAAATTTCTTGGAAAGTATTACTATTGCAGTGAATGGATA
1 TATGTATATAGTTATAATAAGCACTGAAATTTCATGG--A--ATTACTATTGCAGTGAATAGATA
*
76070581 GCCATGTTTAGCTATTACATGCCTTCAATTCAACACATTCAAGCAAAGACTAGTTAGATGGTCC-
62 GCCATGTTTAGCTATTACATGCCTTCAATTCAACACATTCAAGCAAAGACTAGTTAAATGG-CCT
* *
76070645 AATTCCACTTTTAGCCACTCCTAAACCTTAATAATTCAATTTGATCCCTTTTAGCTCCTT
126 AATTACACTTTTAGCCACTCCTAAACCTTAATAATTCAATTTAATCCCTTTTAGCTCCTT
76070705 TAT
1 TAT
76070708 TAAATGGAAA
Statistics
Matches: 170, Mismatches: 16, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
185 34 0.20
187 1 0.01
189 131 0.77
190 4 0.02
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (185 bp):
TATGTATATAGTTATAATAAGCACTGAAATTTCATGGAATTACTATTGCAGTGAATAGATAGCCA
TGTTTAGCTATTACATGCCTTCAATTCAACACATTCAAGCAAAGACTAGTTAAATGGCCTAATTA
CACTTTTAGCCACTCCTAAACCTTAATAATTCAATTTAATCCCTTTTAGCTCCTT
Found at i:76073960 original size:21 final size:21
Alignment explanation
Indices: 76073934--76073974 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
76073924 ATCTGCTCAA
* *
76073934 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
76073955 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
76073975 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:76088642 original size:2 final size:2
Alignment explanation
Indices: 76088635--76088664 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
76088625 TTCAAAATCA
76088635 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76088665 TTGTTCCTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76089968 original size:6 final size:6
Alignment explanation
Indices: 76089957--76090006 Score: 54
Period size: 6 Copynumber: 9.0 Consensus size: 6
76089947 TCAATTCCAA
* *
76089957 AAAATT AAAATT AAAATT --AATT -AAATT AAAA-T AATATT AAATTT
1 AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT
76090001 AAAATT
1 AAAATT
76090007 TACATAAAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
4 4 0.11
5 8 0.22
6 25 0.68
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (6 bp):
AAAATT
Found at i:76089978 original size:16 final size:16
Alignment explanation
Indices: 76089959--76090006 Score: 62
Period size: 15 Copynumber: 3.0 Consensus size: 16
76089949 AATTCCAAAA
76089959 AATTAAAATTAAAATT
1 AATTAAAATTAAAATT
*
76089975 AATT-AAATTAAAATA
1 AATTAAAATTAAAATT
*
76089990 ATATTAAATTTAAAATT
1 A-ATTAAAATTAAAATT
76090007 TACATAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 11 0.41
16 7 0.26
17 9 0.33
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
AATTAAAATTAAAATT
Found at i:76092342 original size:50 final size:50
Alignment explanation
Indices: 76092267--76092443 Score: 273
Period size: 50 Copynumber: 3.5 Consensus size: 50
76092257 CCATGGCAAC
76092267 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
76092317 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTAATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
76092367 AAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCGAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
76092417 CAAGTGAAAAGTGGTAGTTTCGGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
76092444 CTGATCAGTG
Statistics
Matches: 115, Mismatches: 11, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
50 92 0.80
51 23 0.20
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:76092457 original size:31 final size:31
Alignment explanation
Indices: 76092419--76092567 Score: 244
Period size: 31 Copynumber: 4.8 Consensus size: 31
76092409 ACAAATGACA
*
76092419 AGTGAAAAGTGGTAGTTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
76092450 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
76092481 AGTGAAAAGTGGTAGCTCCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
76092512 AGTGAAAAATGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
76092543 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
76092568 AAGTGACAAG
Statistics
Matches: 109, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 109 1.00
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:76092655 original size:47 final size:46
Alignment explanation
Indices: 76092585--76092708 Score: 158
Period size: 47 Copynumber: 2.7 Consensus size: 46
76092575 AAGTGATTTC
* *
76092585 CGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * * *
76092631 CTGTATAAGACCATATCTAGGATATGGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
76092678 CGTGTAAGACCATAGCTGGGCTATGGCATCG
1 CGTATAAGACCATATCTGGGATATGGCATCG
76092709 ATATATGAAT
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
46 26 0.39
47 40 0.61
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
Found at i:76092743 original size:43 final size:43
Alignment explanation
Indices: 76092679--76092794 Score: 155
Period size: 43 Copynumber: 2.7 Consensus size: 43
76092669 TATGTGATTC
*
76092679 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* *
76092721 GTGTAAGACCATAGCTGGGGCTATGGCAT-AATTATGTGAAGAT
1 GTGTAAGACCATAGCT-GGGCTATGGCATCGATTATATGAAGAT
* **
76092764 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
76092795 GAAAATGAAG
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
42 27 0.42
43 37 0.58
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:76105460 original size:6 final size:6
Alignment explanation
Indices: 76105446--76105496 Score: 57
Period size: 6 Copynumber: 8.5 Consensus size: 6
76105436 CACCGCCAAA
* ** * *
76105446 TCCACC TCCAGC TCCACC TCCACC TCCAAA TCCACC ACCAGC TCCACC
1 TCCACC TCCACC TCCACC TCCACC TCCACC TCCACC TCCACC TCCACC
76105494 TCC
1 TCC
76105497 GAATCCTCCA
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.22, C:0.59, G:0.04, T:0.16
Consensus pattern (6 bp):
TCCACC
Found at i:76105475 original size:30 final size:30
Alignment explanation
Indices: 76105435--76105496 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
76105425 ACCACCTGTA
*
76105435 CCACCGCCAAATCCACCTCCAGCTCCACCT
1 CCACCGCCAAATCCACCACCAGCTCCACCT
*
76105465 CCACCTCCAAATCCACCACCAGCTCCACCT
1 CCACCGCCAAATCCACCACCAGCTCCACCT
76105495 CC
1 CC
76105497 GAATCCTCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.24, C:0.58, G:0.05, T:0.13
Consensus pattern (30 bp):
CCACCGCCAAATCCACCACCAGCTCCACCT
Found at i:76105501 original size:24 final size:24
Alignment explanation
Indices: 76105465--76105551 Score: 93
Period size: 24 Copynumber: 3.4 Consensus size: 24
76105455 AGCTCCACCT
*
76105465 CCACCTCCAAATCCACCACCAGCT
1 CCACCTCCAAATCCACCACCAGCA
*
76105489 CCACCTCCGAATCCTCCACCACCACCGGCA
1 CCACCTCC-AA--ATCCACCACCA---GCA
*
76105519 CCACCTCCAAATCCTCCACCAGCA
1 CCACCTCCAAATCCACCACCAGCA
76105543 CCACCTCCA
1 CCACCTCCA
76105552 GCACCGCCAC
Statistics
Matches: 53, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
24 20 0.38
25 2 0.04
27 19 0.36
29 2 0.04
30 10 0.19
ACGTcount: A:0.26, C:0.56, G:0.06, T:0.11
Consensus pattern (24 bp):
CCACCTCCAAATCCACCACCAGCA
Found at i:76105511 original size:30 final size:29
Alignment explanation
Indices: 76105447--76105551 Score: 106
Period size: 30 Copynumber: 3.5 Consensus size: 29
76105437 ACCGCCAAAT
*
76105447 CCACCTCCAGCTCCACCTCC-A-CCTCCAAA
1 CCACCACCAGCTCCACCTCCAATCCTCC--A
76105476 TCCACCACCAGCTCCACCTCCGAATCCTCCA
1 -CCACCACCAGCTCCACCTCC-AATCCTCCA
* *
76105507 CCACCACCGGCACCACCTCCAAATCCTCCA
1 CCACCACCAGCTCCACCTCC-AATCCTCCA
* *
76105537 CCAGCACCACCTCCA
1 CCACCACCAGCTCCA
76105552 GCACCGCCAC
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
30 57 0.89
31 1 0.02
32 1 0.02
33 5 0.08
ACGTcount: A:0.25, C:0.57, G:0.06, T:0.12
Consensus pattern (29 bp):
CCACCACCAGCTCCACCTCCAATCCTCCA
Found at i:76105561 original size:24 final size:23
Alignment explanation
Indices: 76105505--76105562 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 23
76105495 CCGAATCCTC
*
76105505 CACCACCACCGGCACCACCTCCA
1 CACCACCACCAGCACCACCTCCA
* *
76105528 AATCCTCCACCAGCACCACCTCCA
1 CA-CCACCACCAGCACCACCTCCA
*
76105552 GCACCGCCACC
1 -CACCACCACC
76105563 GAAACCACCA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
23 1 0.04
24 26 0.93
25 1 0.04
ACGTcount: A:0.26, C:0.59, G:0.09, T:0.07
Consensus pattern (23 bp):
CACCACCACCAGCACCACCTCCA
Found at i:76105639 original size:30 final size:30
Alignment explanation
Indices: 76105591--76105700 Score: 134
Period size: 30 Copynumber: 3.7 Consensus size: 30
76105581 AAAGCCGCCG
76105591 CCACCTCCAA-TGCCACCACCCTTTCCAATT
1 CCACCTCCAAGT-CCACCACCCTTTCCAATT
* *
76105621 CCTCCACCAAGTCCACCACCCTTTCCAATT
1 CCACCTCCAAGTCCACCACCCTTTCCAATT
* * * *
76105651 CCACCTCCAAGGCCTCC-TCCTTTGCCAATA
1 CCACCTCCAAGTCCACCACCCTTT-CCAATT
76105681 CCACCTCCAAGTCCACCACC
1 CCACCTCCAAGTCCACCACC
76105701 ATGTCCTCCT
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
29 5 0.08
30 59 0.89
31 2 0.03
ACGTcount: A:0.23, C:0.51, G:0.05, T:0.21
Consensus pattern (30 bp):
CCACCTCCAAGTCCACCACCCTTTCCAATT
Found at i:76105670 original size:72 final size:67
Alignment explanation
Indices: 76105614--76106074 Score: 320
Period size: 72 Copynumber: 7.0 Consensus size: 67
76105604 CACCACCCTT
76105614 TCCAATTCCTCCACCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGGCCTCCTCCTTTGCCAA
1 TCCAA-TCCTCCACCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGGCCTCCTCCTTTGCC-A
76105679 TACCACC
64 -A-C-CC
* * * *
76105686 TCCAAGTCCACCACCATGTCCTCCTCCCTTTCCAATTCCACCTCCAAGGCCTCCTCCTTTGCCAA
1 TCCAA-TCCTCCACCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGGCCTCCTCCTTTGCCAA
76105751 --C
65 CCC
* *
76105752 ACC-A-CCT---CCAAGTCCACCACCCTTTCCAATTCCACCTCCGAGGCCTCCTCCTTTGCCAA-
1 TCCAATCCTCCACCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGGCCTCCTCCTTTGCCAAC
76105811 --
66 CC
* * *
76105811 TACC-A-CCT---CCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGTCCACCTCCTTTTCCTA
1 T-CCAATCCTCCACCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGGCCTCCTCCTTTGCC-A
*
76105871 TTCCACC
64 --AC-CC
* * * * * * *
76105878 ACCATGTCCTCCTCCAAGTCCACCTCCCTTTCCTATTCCACCACCAAGGCCTCCTCCTTTTCCAA
1 TCCA-ATCCTCCACCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGGCCTCCTCCTTTGCCAA
76105943 ---
65 CCC
* * * *
76105943 TACC-A-CCT---CCAAGTCCACCACCCTTTCCAATTCCGCCTCCAAGTCCACCTCCTTTTCCTA
1 T-CCAATCCTCCACCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGGCCTCCTCCTTTGCC-A
*
76106003 TTCCACC
64 --AC-CC
* * * * * * * * *
76106010 ACCATGTCCTCCTCCAAGTCCACCTCCCTTGCCAATCCCACCACCAAGGCCTCCACCTTTTCCAA
1 TCCA-ATCCTCCACCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGGCCTCCTCCTTTGCCAA
76106075 TCCCGCCGCC
Statistics
Matches: 316, Mismatches: 45, Indels: 59
0.75 0.11 0.14
Matches are distributed among these distances:
60 144 0.46
61 2 0.01
63 5 0.02
65 1 0.00
66 9 0.03
69 6 0.02
70 1 0.00
71 3 0.01
72 145 0.46
ACGTcount: A:0.20, C:0.49, G:0.06, T:0.25
Consensus pattern (67 bp):
TCCAATCCTCCACCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGGCCTCCTCCTTTGCCAAC
CC
Found at i:76105679 original size:60 final size:60
Alignment explanation
Indices: 76105591--76106206 Score: 331
Period size: 60 Copynumber: 10.2 Consensus size: 60
76105581 AAAGCCGCCG
* * * *
76105591 CCACCTCCAATGCCACCACCCTTT-CCAATTCCTCCACCAAGTCCACCACCCTTTCCAATT
1 CCACCTCCAAGGCCTCC-TCCTTTGCCAATTCCACCACCAAGTCCACCACCCTTTCCAATT
* *
76105651 CCACCTCCAAGGCCTCCTCCTTTGCCAATACCACCTCCAAGTCCACCACCATGTCCTCCTCCCTT
1 CCACCTCCAAGGCCTCCTCCTTTGCCAAT------TCC-A--CCACCA--A-GTCCACCACCCTT
76105716 TCCAATT
54 TCCAATT
** *
76105723 CCACCTCCAAGGCCTCCTCCTTTGCCAACACCACCTCCAAGTCCACCACCCTTTCCAATT
1 CCACCTCCAAGGCCTCCTCCTTTGCCAATTCCACCACCAAGTCCACCACCCTTTCCAATT
* * *
76105783 CCACCTCCGAGGCCTCCTCCTTTGCCAATACCACCTCCAAGTCCACCACCCTTTCCAATT
1 CCACCTCCAAGGCCTCCTCCTTTGCCAATTCCACCACCAAGTCCACCACCCTTTCCAATT
* * * * * * *
76105843 CCACCTCCAAGTCCACCTCCTTTTCCTATTCCACCACCATGT---CC-TCC--TCCAAGT
1 CCACCTCCAAGGCCTCCTCCTTTGCCAATTCCACCACCAAGTCCACCACCCTTTCCAATT
* * * * * *
76105897 CCACCT-C----CC------TTT-CCTATTCCACCACCAAGGCCTCCTCCTTTTCCAATA
1 CCACCTCCAAGGCCTCCTCCTTTGCCAATTCCACCACCAAGTCCACCACCCTTTCCAATT
* * * * * *
76105945 CCACCTCCAAGTCCACCACCCTTT-CCAATTCCGCCTCCAAGTCCACCTCCTTTTCCTATTCCAC
1 CCACCTCCAAGGCCTCC-TCCTTTGCCAATTCCACCACCAAGTCCACC-AC----CCT-TT---C
76106009 CACCATGT
56 CA--AT-T
* * * * * * * * *
76106017 CCTCCTCCAAGTCCACCTCCCTTGCCAATCCCACCACCAAGGCCTCCACCTTTTCCAATC
1 CCACCTCCAAGGCCTCCTCCTTTGCCAATTCCACCACCAAGTCCACCACCCTTTCCAATT
* * * * * * * * *
76106077 CCGCCGCCAAGGCCTCCACCCTTGCCAATCCCACCACCAAGACCCCCACCCTTGCCAATG
1 CCACCTCCAAGGCCTCCTCCTTTGCCAATTCCACCACCAAGTCCACCACCCTTTCCAATT
* * * * *
76106137 CCACCACCAAGTCCACCACCCTTT-CCAATGCCACCACCAAGTCCACCA-CCTTTACCAATT
1 CCACCTCCAAGGCCTCC-TCCTTTGCCAATTCCACCACCAAGTCCACCACCCTTT-CCAATT
*
76106197 CCACCACCAA
1 CCACCTCCAA
76106207 ACCCTCCCCC
Statistics
Matches: 441, Mismatches: 69, Indels: 92
0.73 0.11 0.15
Matches are distributed among these distances:
42 16 0.04
43 3 0.01
45 2 0.00
46 1 0.00
48 11 0.02
49 3 0.01
53 3 0.01
54 12 0.03
56 2 0.00
57 2 0.00
59 9 0.02
60 250 0.57
61 8 0.02
63 8 0.02
65 3 0.01
66 9 0.02
67 2 0.00
69 9 0.02
71 8 0.02
72 80 0.18
ACGTcount: A:0.21, C:0.50, G:0.06, T:0.22
Consensus pattern (60 bp):
CCACCTCCAAGGCCTCCTCCTTTGCCAATTCCACCACCAAGTCCACCACCCTTTCCAATT
Found at i:76105690 original size:42 final size:42
Alignment explanation
Indices: 76105644--76105733 Score: 119
Period size: 42 Copynumber: 2.1 Consensus size: 42
76105634 CACCACCCTT
* *
76105644 TCCAATTCCACCTCCAAGGCCTCCT-CCTTTGCCAATACCACC
1 TCCAAGTCCACCACCAAGGCCTCCTCCCTTT-CCAATACCACC
* * *
76105686 TCCAAGTCCACCACCATGTCCTCCTCCCTTTCCAATTCCACC
1 TCCAAGTCCACCACCAAGGCCTCCTCCCTTTCCAATACCACC
76105728 TCCAAG
1 TCCAAG
76105734 GCCTCCTCCT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
42 37 0.88
43 5 0.12
ACGTcount: A:0.21, C:0.48, G:0.07, T:0.24
Consensus pattern (42 bp):
TCCAAGTCCACCACCAAGGCCTCCTCCCTTTCCAATACCACC
Found at i:76105720 original size:30 final size:30
Alignment explanation
Indices: 76105686--76105892 Score: 220
Period size: 30 Copynumber: 6.9 Consensus size: 30
76105676 CAATACCACC
* * *
76105686 TCCAAGTCCACCACCATGTCCTCCTCCCTT
1 TCCAATTCCACCTCCAAGTCCTCCTCCCTT
*
76105716 TCCAATTCCACCTCCAAGGCCTCCT-CCTT
1 TCCAATTCCACCTCCAAGTCCTCCTCCCTT
** * *
76105745 TGCCAACACCACCTCCAAGTCCACCACCCTT
1 T-CCAATTCCACCTCCAAGTCCTCCTCCCTT
* *
76105776 TCCAATTCCACCTCCGAGGCCTCCT-CCTT
1 TCCAATTCCACCTCCAAGTCCTCCTCCCTT
* * *
76105805 TGCCAATACCACCTCCAAGTCCACCACCCTT
1 T-CCAATTCCACCTCCAAGTCCTCCTCCCTT
* *
76105836 TCCAATTCCACCTCCAAGTCCACCTCCTTT
1 TCCAATTCCACCTCCAAGTCCTCCTCCCTT
* * *
76105866 TCCTATTCCACCACCATGTCCTCCTCC
1 TCCAATTCCACCTCCAAGTCCTCCTCC
76105893 AAGTCCACCT
Statistics
Matches: 146, Mismatches: 27, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
29 10 0.07
30 126 0.86
31 10 0.07
ACGTcount: A:0.19, C:0.49, G:0.06, T:0.25
Consensus pattern (30 bp):
TCCAATTCCACCTCCAAGTCCTCCTCCCTT
Found at i:76105889 original size:90 final size:89
Alignment explanation
Indices: 76105686--76105892 Score: 256
Period size: 90 Copynumber: 2.3 Consensus size: 89
76105676 CAATACCACC
* * * *
76105686 TCCAAGTCCACCACCATGTCCTCCTCCCTTTCCAATTCCACCTCCAAGGCCTCCTCCTTTGCCAA
1 TCCAATTCCACCACCATGTCCTCCT-CCTTTCCAATACCACCTCCAAGGCCACCCCCTTTGCCAA
76105751 CACCACCTCCAAGTCCACCACCCTT
65 CACCACCTCCAAGTCCACCACCCTT
* * *
76105776 TCCAATTCCACCTCCGA-GGCCTCCTCCTTTGCCAATACCACCTCCAAGTCCACCACCCTTT-CC
1 TCCAATTCCACCACC-ATGTCCTCCTCCTTT-CCAATACCACCTCCAAGGCCACC-CCCTTTGCC
** * *
76105839 AATTCCACCTCCAAGTCCACCTCCTTT
63 AACACCACCTCCAAGTCCACCACCCTT
*
76105866 TCCTATTCCACCACCATGTCCTCCTCC
1 TCCAATTCCACCACCATGTCCTCCTCC
76105893 AAGTCCACCT
Statistics
Matches: 99, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
89 6 0.06
90 87 0.88
91 6 0.06
ACGTcount: A:0.19, C:0.49, G:0.06, T:0.25
Consensus pattern (89 bp):
TCCAATTCCACCACCATGTCCTCCTCCTTTCCAATACCACCTCCAAGGCCACCCCCTTTGCCAAC
ACCACCTCCAAGTCCACCACCCTT
Found at i:76105934 original size:30 final size:30
Alignment explanation
Indices: 76105891--76106024 Score: 151
Period size: 30 Copynumber: 4.5 Consensus size: 30
76105881 ATGTCCTCCT
*
76105891 CCAAGTCCACCTCCCTTTCCTATTCCACCA
1 CCAAGTCCACCTCCCTTTCCAATTCCACCA
* * * * *
76105921 CCAAGGCCTCCTCCTTTTCCAATACCACCT
1 CCAAGTCCACCTCCCTTTCCAATTCCACCA
* * *
76105951 CCAAGTCCACCACCCTTTCCAATTCCGCCT
1 CCAAGTCCACCTCCCTTTCCAATTCCACCA
* *
76105981 CCAAGTCCACCTCCTTTTCCTATTCCACCA
1 CCAAGTCCACCTCCCTTTCCAATTCCACCA
* *
76106011 CCATGTCCTCCTCC
1 CCAAGTCCACCTCC
76106025 AAGTCCACCT
Statistics
Matches: 85, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 85 1.00
ACGTcount: A:0.19, C:0.49, G:0.05, T:0.27
Consensus pattern (30 bp):
CCAAGTCCACCTCCCTTTCCAATTCCACCA
Found at i:76106063 original size:42 final size:42
Alignment explanation
Indices: 76105837--76106063 Score: 192
Period size: 42 Copynumber: 5.3 Consensus size: 42
76105827 ACCACCCTTT
* * *
76105837 CCAATTCCACCTCCAAGTCCACCTCCTTTTCCTATTCCACCA
1 CCAAGTCCTCCTCCAAGTCCACCTCCCTTTCCTATTCCACCA
*
76105879 CCATGTCCTCCTCCAAGTCCACCTCCCTTTCCTATTCCACCA
1 CCAAGTCCTCCTCCAAGTCCACCTCCCTTTCCTATTCCACCA
*** *
76105921 CCAAGGCCTCCTCCTTTTCCAA-TACCACCTCCAAGTCC-A--CCACCCTTT
1 CCAA-G--TCCTCC---TCCAAGT-CCACCTCCCTTTCCTATTCCA-CC--A
* * *
76105969 CCAATTCCGCCTCCAAGTCCACCTCCTTTTCCTATTCCACCA
1 CCAAGTCCTCCTCCAAGTCCACCTCCCTTTCCTATTCCACCA
* * * *
76106011 CCATGTCCTCCTCCAAGTCCACCTCCCTTGCCAATCCCACCA
1 CCAAGTCCTCCTCCAAGTCCACCTCCCTTTCCTATTCCACCA
*
76106053 CCAAGGCCTCC
1 CCAAGTCCTCC
76106064 ACCTTTTCCA
Statistics
Matches: 147, Mismatches: 24, Indels: 28
0.74 0.12 0.14
Matches are distributed among these distances:
42 101 0.69
43 3 0.02
44 2 0.01
45 17 0.12
46 2 0.01
47 2 0.01
48 20 0.14
ACGTcount: A:0.19, C:0.49, G:0.06, T:0.26
Consensus pattern (42 bp):
CCAAGTCCTCCTCCAAGTCCACCTCCCTTTCCTATTCCACCA
Found at i:76106075 original size:30 final size:30
Alignment explanation
Indices: 76106035--76106246 Score: 198
Period size: 30 Copynumber: 7.1 Consensus size: 30
76106025 AAGTCCACCT
* *
76106035 CCCTTGCCAATCCCACCACCAAGGCCTCCA
1 CCCTTTCCAATCCCACCACCAAGCCCTCCA
* * * *
76106065 CCTTTTCCAATCCCGCCGCCAAGGCCTCCA
1 CCCTTTCCAATCCCACCACCAAGCCCTCCA
*
76106095 CCCTTGCCAATCCCACCACCAAGACCC-CCA
1 CCCTTTCCAATCCCACCACCAAG-CCCTCCA
* * * *
76106125 CCCTTGCCAATGCCACCACCAAGTCCACCA
1 CCCTTTCCAATCCCACCACCAAGCCCTCCA
* * *
76106155 CCCTTTCCAATGCCACCACCAAGTCCACCA
1 CCCTTTCCAATCCCACCACCAAGCCCTCCA
* *
76106185 -CCTTTACCAATTCCACCACCAAACCCTCC-
1 CCCTTT-CCAATCCCACCACCAAGCCCTCCA
* *
76106214 CCCTGCTCC-ACCTCCACCACCAAGCCCTCCA
1 CCCT-TTCCAATC-CCACCACCAAGCCCTCCA
76106245 CC
1 CC
76106247 AGCTCCACCT
Statistics
Matches: 155, Mismatches: 20, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
29 8 0.05
30 142 0.92
31 5 0.03
ACGTcount: A:0.24, C:0.54, G:0.08, T:0.15
Consensus pattern (30 bp):
CCCTTTCCAATCCCACCACCAAGCCCTCCA
Found at i:76106093 original size:72 final size:72
Alignment explanation
Indices: 76105948--76106093 Score: 166
Period size: 72 Copynumber: 2.0 Consensus size: 72
76105938 TCCAATACCA
* * * * * * * *
76105948 CCTCCAAGTCCACCACCCTTTCCAATTCCGCCTCCAAGTCCACCTCCTTTTCCTATTCCACCACC
1 CCTCCAAGTCCACCACCCTTGCCAATCCCACCACCAAGGCCACCACCTTTTCCAATCCCACCACC
* *
76106013 ATGTCCT
66 AAGGCCT
* * * *
76106020 CCTCCAAGTCCACCTCCCTTGCCAATCCCACCACCAAGGCCTCCACCTTTTCCAATCCCGCCGCC
1 CCTCCAAGTCCACCACCCTTGCCAATCCCACCACCAAGGCCACCACCTTTTCCAATCCCACCACC
76106085 AAGGCCT
66 AAGGCCT
76106092 CC
1 CC
76106094 ACCCTTGCCA
Statistics
Matches: 60, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
72 60 1.00
ACGTcount: A:0.18, C:0.51, G:0.08, T:0.23
Consensus pattern (72 bp):
CCTCCAAGTCCACCACCCTTGCCAATCCCACCACCAAGGCCACCACCTTTTCCAATCCCACCACC
AAGGCCT
Found at i:76106145 original size:132 final size:132
Alignment explanation
Indices: 76105620--76106117 Score: 602
Period size: 132 Copynumber: 3.8 Consensus size: 132
76105610 CCTTTCCAAT
* * * *
76105620 TCCTCCACCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGGCCTCCTCCTTTGCCAATACCAC
1 TCCTCCTCCAAGTCCACCTCCCTTTCCAATTCCACCACCAAGGCCTCCTCCTTTTCCAATACCAC
* * *** * * **** ** ****
76105685 CTCCAAGTCCACCACCATGTCCTCCTCC-CTTTCCAATTCCACCTCCAAGGCCTCCTCCTTTGCC
66 CTCCAAGTCCACCACCCTTTCCAATTCCAC-CTCCAAGTCCACCTCCTTTTCCTATTCCACCACC
**
76105749 AAC
130 ATG
* * * * * *
76105752 ACCACCTCCAAGTCCACCACCCTTTCCAATTCCACCTCCGAGGCCTCCTCCTTTGCCAATACCAC
1 TCCTCCTCCAAGTCCACCTCCCTTTCCAATTCCACCACCAAGGCCTCCTCCTTTTCCAATACCAC
76105817 CTCCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGTCCACCTCCTTTTCCTATTCCACCACCA
66 CTCCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGTCCACCTCCTTTTCCTATTCCACCACCA
76105882 TG
131 TG
*
76105884 TCCTCCTCCAAGTCCACCTCCCTTTCCTATTCCACCACCAAGGCCTCCTCCTTTTCCAATACCAC
1 TCCTCCTCCAAGTCCACCTCCCTTTCCAATTCCACCACCAAGGCCTCCTCCTTTTCCAATACCAC
*
76105949 CTCCAAGTCCACCACCCTTTCCAATTCCGCCTCCAAGTCCACCTCCTTTTCCTATTCCACCACCA
66 CTCCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGTCCACCTCCTTTTCCTATTCCACCACCA
76106014 TG
131 TG
* * * * *
76106016 TCCTCCTCCAAGTCCACCTCCCTTGCCAATCCCACCACCAAGGCCTCCACCTTTTCCAATCCCGC
1 TCCTCCTCCAAGTCCACCTCCCTTTCCAATTCCACCACCAAGGCCTCCTCCTTTTCCAATACCAC
* * * * * *
76106081 CGCCAAGGCCTCCACCCTTGCCAATCCCACCACCAAG
66 CTCCAAGTCCACCACCCTTTCCAATTCCACCTCCAAG
76106118 ACCCCCACCC
Statistics
Matches: 321, Mismatches: 44, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
132 320 1.00
133 1 0.00
ACGTcount: A:0.20, C:0.49, G:0.07, T:0.24
Consensus pattern (132 bp):
TCCTCCTCCAAGTCCACCTCCCTTTCCAATTCCACCACCAAGGCCTCCTCCTTTTCCAATACCAC
CTCCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGTCCACCTCCTTTTCCTATTCCACCACCA
TG
Found at i:76106231 original size:90 final size:90
Alignment explanation
Indices: 76106035--76106246 Score: 234
Period size: 90 Copynumber: 2.4 Consensus size: 90
76106025 AAGTCCACCT
* * * * * *
76106035 CCCTTGCCAATCCCACCACCAAGGCCTCCACCTTTTCCAATCCCGCCGCCAAGGCCTCCACCCTT
1 CCCTTGCCAATGCCACCACCAAGCCCTCCACCCTTTCCAATCCCACCACCAAGGCCACCACCCTT
*
76106100 GCCAATCCCACCACCAAGACCCCCA
66 ACCAATCCCACCACCAAGACCCCCA
* * * * *
76106125 CCCTTGCCAATGCCACCACCAAGTCCACCACCCTTTCCAATGCCACCACCAAGTCCACCACCTTT
1 CCCTTGCCAATGCCACCACCAAGCCCTCCACCCTTTCCAATCCCACCACCAAGGCCACCACCCTT
*
76106190 ACCAATTCCACCACCAA-ACCCTCC-
66 ACCAATCCCACCACCAAGACCC-CCA
*
76106214 CCC-TGCTCCACCT-CCACCACCAAGCCCTCCACC
1 CCCTTG--CCA-ATGCCACCACCAAGCCCTCCACC
76106247 AGCTCCACCT
Statistics
Matches: 103, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
88 2 0.02
89 7 0.07
90 93 0.90
91 1 0.01
ACGTcount: A:0.24, C:0.54, G:0.08, T:0.15
Consensus pattern (90 bp):
CCCTTGCCAATGCCACCACCAAGCCCTCCACCCTTTCCAATCCCACCACCAAGGCCACCACCCTT
ACCAATCCCACCACCAAGACCCCCA
Found at i:76106252 original size:30 final size:30
Alignment explanation
Indices: 76106196--76106296 Score: 112
Period size: 30 Copynumber: 3.4 Consensus size: 30
76106186 CTTTACCAAT
* * *
76106196 TCCACCACCAAACCCTCCCCCTGCTCCACC
1 TCCACCACCAAGCCCTCCACCAGCTCCACC
76106226 TCCACCACCAAGCCCTCCACCAGCTCCACC
1 TCCACCACCAAGCCCTCCACCAGCTCCACC
* * * * * *
76106256 TCCACCTCCAAGTCCACCACCACCCCCAGC
1 TCCACCACCAAGCCCTCCACCAGCTCCACC
*
76106286 TCCACCTCCAA
1 TCCACCACCAA
76106297 AACCAGCTCC
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 62 1.00
ACGTcount: A:0.23, C:0.60, G:0.05, T:0.12
Consensus pattern (30 bp):
TCCACCACCAAGCCCTCCACCAGCTCCACC
Found at i:76106260 original size:6 final size:6
Alignment explanation
Indices: 76106249--76106360 Score: 62
Period size: 6 Copynumber: 18.2 Consensus size: 6
76106239 CCTCCACCAG
* * * * * *
76106249 CTCCAC CTCCAC CTCCAA GTCCAC CACCAC CCCCAG CTCCAC CTCCAA
1 CTCCAC CTCCAC CTCCAC CTCCAC CTCCAC CTCCAC CTCCAC CTCCAC
** * * * * * **
76106297 AACCAG CTCCAC CTCCAG CACCAC CACCAA AACCAC CTCCAAGAC CTCCAC
1 CTCCAC CTCCAC CTCCAC CTCCAC CTCCAC CTCCAC CTCC---AC CTCCAC
76106348 CTCCAC CTCCAC C
1 CTCCAC CTCCAC C
76106361 AAAACCACCC
Statistics
Matches: 79, Mismatches: 24, Indels: 6
0.72 0.22 0.06
Matches are distributed among these distances:
6 73 0.92
9 6 0.08
ACGTcount: A:0.27, C:0.58, G:0.04, T:0.11
Consensus pattern (6 bp):
CTCCAC
Found at i:76106309 original size:30 final size:30
Alignment explanation
Indices: 76106255--76106337 Score: 103
Period size: 30 Copynumber: 2.8 Consensus size: 30
76106245 CCAGCTCCAC
** *
76106255 CTCCACCTCCAAGTCCACCACCACCCCCAG
1 CTCCACCTCCAAAACCACCTCCACCCCCAG
* *
76106285 CTCCACCTCCAAAACCAGCTCCACCTCCAG
1 CTCCACCTCCAAAACCACCTCCACCCCCAG
* *
76106315 CACCACCACCAAAACCACCTCCA
1 CTCCACCTCCAAAACCACCTCCA
76106338 AGACCTCCAC
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.29, C:0.57, G:0.05, T:0.10
Consensus pattern (30 bp):
CTCCACCTCCAAAACCACCTCCACCCCCAG
Found at i:76106319 original size:18 final size:18
Alignment explanation
Indices: 76106242--76106319 Score: 86
Period size: 18 Copynumber: 4.3 Consensus size: 18
76106232 ACCAAGCCCT
76106242 CCACCAGCTCCACCTCCA
1 CCACCAGCTCCACCTCCA
* *
76106260 CCTCCAAG-TCCACCACCA
1 CCACC-AGCTCCACCTCCA
*
76106278 CCCCCAGCTCCACCTCCA
1 CCACCAGCTCCACCTCCA
**
76106296 AAACCAGCTCCACCTCCA
1 CCACCAGCTCCACCTCCA
*
76106314 GCACCA
1 CCACCA
76106320 CCACCAAAAC
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
17 2 0.04
18 45 0.92
19 2 0.04
ACGTcount: A:0.26, C:0.58, G:0.06, T:0.10
Consensus pattern (18 bp):
CCACCAGCTCCACCTCCA
Found at i:76109045 original size:18 final size:21
Alignment explanation
Indices: 76109009--76109047 Score: 57
Period size: 18 Copynumber: 2.0 Consensus size: 21
76108999 ATTAGTAGTT
76109009 GAATGTTTTTTCTTCAAAAAA
1 GAATGTTTTTTCTTCAAAAAA
76109030 GAAT-TTTTTT-TT-AAAAAA
1 GAATGTTTTTTCTTCAAAAAA
76109048 TAGTTTCTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 2 0.11
20 6 0.33
21 4 0.22
ACGTcount: A:0.41, C:0.05, G:0.08, T:0.46
Consensus pattern (21 bp):
GAATGTTTTTTCTTCAAAAAA
Found at i:76126860 original size:19 final size:18
Alignment explanation
Indices: 76126821--76126863 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
76126811 AGCTATATAT
**
76126821 ATATATATTAATAATTTA
1 ATATATATTAATAATAAA
76126839 ATATATACTTAATAATAAA
1 ATATATA-TTAATAATAAA
76126858 ATATAT
1 ATATAT
76126864 TTTATGTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (18 bp):
ATATATATTAATAATAAA
Found at i:76131064 original size:46 final size:46
Alignment explanation
Indices: 76130997--76131090 Score: 188
Period size: 46 Copynumber: 2.0 Consensus size: 46
76130987 AGTATTACCC
76130997 ATAAATTTAGAATTTAGTCCTTTTACTACTAGAATTTAAAATTTAG
1 ATAAATTTAGAATTTAGTCCTTTTACTACTAGAATTTAAAATTTAG
76131043 ATAAATTTAGAATTTAGTCCTTTTACTACTAGAATTTAAAATTTAG
1 ATAAATTTAGAATTTAGTCCTTTTACTACTAGAATTTAAAATTTAG
76131089 AT
1 AT
76131091 TCAATTGTTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.44
Consensus pattern (46 bp):
ATAAATTTAGAATTTAGTCCTTTTACTACTAGAATTTAAAATTTAG
Found at i:76131497 original size:20 final size:20
Alignment explanation
Indices: 76131472--76131509 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
76131462 AAAAAAATAT
*
76131472 ATTTTATAATTAAGTTTAAA
1 ATTTTAAAATTAAGTTTAAA
*
76131492 ATTTTAAAATTAATTTTA
1 ATTTTAAAATTAAGTTTA
76131510 TTATCATTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (20 bp):
ATTTTAAAATTAAGTTTAAA
Found at i:76136619 original size:30 final size:31
Alignment explanation
Indices: 76136585--76136649 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
76136575 AACAACTCTG
*
76136585 TGACTT-AATAAAAACTTTTGAATAGTTCAA
1 TGACTTGAATAAAAACTTTTGAATAATTCAA
* ** *
76136615 TGACTTGAATGAAATTTTTTGAATAATTTAA
1 TGACTTGAATAAAAACTTTTGAATAATTCAA
76136646 TGAC
1 TGAC
76136650 CAAATTGTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 6 0.21
31 23 0.79
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.40
Consensus pattern (31 bp):
TGACTTGAATAAAAACTTTTGAATAATTCAA
Found at i:76138132 original size:32 final size:31
Alignment explanation
Indices: 76138096--76138166 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 31
76138086 TATTGAGAAT
*
76138096 TTATAAATATATAAATTAAAACTTTATAAA-AA
1 TTATAAATATATAAA-GAAAA-TTTATAAATAA
* *
76138128 TTATACAATATATATAGGAAATTTATAAATAA
1 TTATA-AATATATAAAGAAAATTTATAAATAA
76138160 TTATAAA
1 TTATAAA
76138167 AATCTATAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
31 10 0.29
32 15 0.44
33 9 0.26
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (31 bp):
TTATAAATATATAAAGAAAATTTATAAATAA
Found at i:76138174 original size:20 final size:18
Alignment explanation
Indices: 76138096--76138176 Score: 55
Period size: 20 Copynumber: 4.4 Consensus size: 18
76138086 TATTGAGAAT
76138096 TTATAAATA-TAT--AAA
1 TTATAAATATTATAAAAA
76138111 TTA-AAACT-TTATAAAAA
1 TTATAAA-TATTATAAAAA
*
76138128 TTATACAATATATATAGGAAAT
1 TTATA-AATAT-TATA--AAAA
76138150 TTATAAATAATTATAAAAA
1 TTATAAAT-ATTATAAAAA
76138169 TCTATAAA
1 T-TATAAA
76138177 CCAAAAAGGT
Statistics
Matches: 52, Mismatches: 2, Indels: 19
0.71 0.03 0.26
Matches are distributed among these distances:
14 3 0.06
15 7 0.13
17 6 0.12
18 2 0.04
19 7 0.13
20 10 0.19
21 7 0.13
22 10 0.19
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (18 bp):
TTATAAATATTATAAAAA
Found at i:76138441 original size:21 final size:19
Alignment explanation
Indices: 76138411--76138460 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
76138401 TCCACGTGAA
*
76138411 TTTTTATTTTTATTTATAAT
1 TTTTTATTTTT-GTTATAAT
*
76138431 TTTTATATTTTTGTTGTAAT
1 TTTT-TATTTTTGTTATAAT
76138451 TTTTTATTTT
1 TTTTTATTTT
76138461 ATATAAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 6 0.22
20 14 0.52
21 7 0.26
ACGTcount: A:0.20, C:0.00, G:0.04, T:0.76
Consensus pattern (19 bp):
TTTTTATTTTTGTTATAAT
Found at i:76141172 original size:27 final size:26
Alignment explanation
Indices: 76141120--76141179 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
76141110 TTGCCGCACA
76141120 TCTAATATGTATGTACTTCATATATT
1 TCTAATATGTATGTACTTCATATATT
*
76141146 GTCTAATATCG-ATGTAACTTC-TGTATT
1 -TCTAATAT-GTATGT-ACTTCATATATT
76141173 T-TAATAT
1 TCTAATAT
76141180 AATTACAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
25 6 0.20
26 1 0.03
27 17 0.57
28 6 0.20
ACGTcount: A:0.30, C:0.12, G:0.10, T:0.48
Consensus pattern (26 bp):
TCTAATATGTATGTACTTCATATATT
Found at i:76141391 original size:25 final size:24
Alignment explanation
Indices: 76141345--76141392 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
76141335 AAATGTTATG
*
76141345 AAATAAATAAAAGAGAGTAAAAAT
1 AAATAAATAAAAGAGAGCAAAAAT
76141369 AAATAAA-AAATAGGAGAGCAAAAA
1 AAATAAATAAA-A-GAGAGCAAAAA
76141393 AGTAAGTATG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 3 0.14
24 8 0.38
25 10 0.48
ACGTcount: A:0.71, C:0.02, G:0.15, T:0.12
Consensus pattern (24 bp):
AAATAAATAAAAGAGAGCAAAAAT
Found at i:76147998 original size:6 final size:6
Alignment explanation
Indices: 76147987--76148018 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
76147977 TACAATACAT
76147987 TATGTA TATG-- TATGTA TATGTA TATGTA TATG
1 TATGTA TATGTA TATGTA TATGTA TATGTA TATG
76148019 GCCTTGATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
4 4 0.17
6 20 0.83
ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50
Consensus pattern (6 bp):
TATGTA
Found at i:76184533 original size:15 final size:15
Alignment explanation
Indices: 76184507--76184539 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
76184497 TTGTTGATTT
76184507 TTGGGCTATTGGGCTG
1 TTGGGCTATTGGG-TG
76184523 TTGGG-TATTGGGTG
1 TTGGGCTATTGGGTG
76184537 TTG
1 TTG
76184540 TAATTGGGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.29
15 7 0.41
16 5 0.29
ACGTcount: A:0.06, C:0.06, G:0.45, T:0.42
Consensus pattern (15 bp):
TTGGGCTATTGGGTG
Found at i:76186022 original size:29 final size:28
Alignment explanation
Indices: 76185956--76186024 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 28
76185946 TTTTTATTGG
*
76185956 TCAC-CAATTATGAAAAGTTACAAAATA
1 TCACTCAACTATGAAAAGTTACAAAATA
* * *
76185983 TTAATCTAACTATGAAAAGTTAGAAAATAA
1 TCACTC-AACTATGAAAAGTTACAAAAT-A
76186013 TCACTCAACTAT
1 TCACTCAACTAT
76186025 TCAATTTAGT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
27 2 0.06
28 1 0.03
29 25 0.76
30 5 0.15
ACGTcount: A:0.49, C:0.14, G:0.07, T:0.29
Consensus pattern (28 bp):
TCACTCAACTATGAAAAGTTACAAAATA
Found at i:76187498 original size:44 final size:44
Alignment explanation
Indices: 76187434--76187523 Score: 162
Period size: 44 Copynumber: 2.0 Consensus size: 44
76187424 CAAAATTTGA
76187434 ATAGTATAGATTCTTAGAATGATCCGAATTGGAGAATATGGACT
1 ATAGTATAGATTCTTAGAATGATCCGAATTGGAGAATATGGACT
* *
76187478 ATAGTATAGATTCTTTGAATGATCTGAATTGGAGAATATGGACT
1 ATAGTATAGATTCTTAGAATGATCCGAATTGGAGAATATGGACT
76187522 AT
1 AT
76187524 CTCTACAACT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.36, C:0.08, G:0.22, T:0.34
Consensus pattern (44 bp):
ATAGTATAGATTCTTAGAATGATCCGAATTGGAGAATATGGACT
Found at i:76192213 original size:21 final size:23
Alignment explanation
Indices: 76192171--76192213 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 23
76192161 TATAATATAA
*
76192171 ATATGATAAAATAATTTATTAAT
1 ATATGATAAAATAAATTATTAAT
*
76192194 ATATGA-AATATAAATT-TTAA
1 ATATGATAAAATAAATTATTAA
76192214 ATGCTTTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 4 0.22
22 8 0.44
23 6 0.33
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (23 bp):
ATATGATAAAATAAATTATTAAT
Found at i:76200952 original size:15 final size:16
Alignment explanation
Indices: 76200926--76200955 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
76200916 ATATATATAT
76200926 ATTAATTTTTAATTTA
1 ATTAATTTTTAATTTA
76200942 ATTAA-TTTTAATTT
1 ATTAATTTTTAATTT
76200956 TTATATTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
ATTAATTTTTAATTTA
Found at i:76200965 original size:15 final size:15
Alignment explanation
Indices: 76200925--76200965 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
76200915 TATATATATA
76200925 TATTAATTTTTAATT
1 TATTAATTTTTAATT
76200940 TAATTAA-TTTTAATT
1 T-ATTAATTTTTAATT
76200955 T-TTATATTTTT
1 TATTA-ATTTTT
76200966 TAAAAAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
13 3 0.13
14 1 0.04
15 14 0.61
16 5 0.22
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
TATTAATTTTTAATT
Found at i:76203166 original size:16 final size:17
Alignment explanation
Indices: 76203147--76203179 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
76203137 GCTTCCTCAT
76203147 TTTAAATTT-ATTTTTA
1 TTTAAATTTAATTTTTA
76203163 TTTAAATTTAATTTTTA
1 TTTAAATTTAATTTTTA
76203180 GAAAAAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTAAATTTAATTTTTA
Found at i:76208436 original size:101 final size:99
Alignment explanation
Indices: 76208240--76208436 Score: 232
Period size: 101 Copynumber: 2.0 Consensus size: 99
76208230 AATATATTTA
* * * * *
76208240 AACTAAGTTAATAAACACATTTAATAATATTGATTAAAAAAATTGTCGAATTTTGACTTTCTTTT
1 AACTAAATTAATAAACACATTTAATAATAGTGATTAAAAAAATTGTCAAAATTTGACTTTCTTTC
*
76208305 CAAAACAAACCCACTAAACATTTTTCATCTGCAC
66 CAAAACAAACCCACAAAACATTTTTCATCTGCAC
* * * *
76208339 AACTAAATTGATAAATATATTTAATAATAGTGATTAAAAAATAATTGTTAAAATTTGACTTTCTT
1 AACTAAATTAATAAACACATTTAATAATAGTGATT-AAAAA-AATTGTCAAAATTTGACTTTCTT
** * * * *
76208404 TCCGGAACAAGCTCACAAAATATTTTTTATCTG
64 TCCAAAACAAACCCACAAAACATTTTTCATCTG
76208437 TATTAAACAA
Statistics
Matches: 80, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
99 30 0.38
100 5 0.06
101 45 0.56
ACGTcount: A:0.42, C:0.14, G:0.08, T:0.37
Consensus pattern (99 bp):
AACTAAATTAATAAACACATTTAATAATAGTGATTAAAAAAATTGTCAAAATTTGACTTTCTTTC
CAAAACAAACCCACAAAACATTTTTCATCTGCAC
Found at i:76209186 original size:46 final size:46
Alignment explanation
Indices: 76209124--76209215 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
76209114 CTTTTATATA
76209124 TATATTATAGATTAATTAAGATTACAATTATGATTTATAAATTTAT
1 TATATTATAGATTAATTAAGATTACAATTATGATTTATAAATTTAT
76209170 TATATTATAGATTAATTAAGATTACAATTATGATTTATAAATTTAT
1 TATATTATAGATTAATTAAGATTACAATTATGATTTATAAATTTAT
76209216 CTCAACATAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (46 bp):
TATATTATAGATTAATTAAGATTACAATTATGATTTATAAATTTAT
Found at i:76209187 original size:16 final size:16
Alignment explanation
Indices: 76209124--76209187 Score: 53
Period size: 16 Copynumber: 4.1 Consensus size: 16
76209114 CTTTTATATA
76209124 TATATTATAGATTAAT
1 TATATTATAGATTAAT
* *
76209140 TAAGATTACA-ATT-AT
1 T-ATATTATAGATTAAT
* * *
76209155 GAT-TTATAAATTTAT
1 TATATTATAGATTAAT
76209170 TATATTATAGATTAAT
1 TATATTATAGATTAAT
76209186 TA
1 TA
76209188 AGATTACAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 8
0.69 0.15 0.15
Matches are distributed among these distances:
13 4 0.11
14 4 0.11
15 6 0.17
16 16 0.44
17 6 0.17
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (16 bp):
TATATTATAGATTAAT
Found at i:76209351 original size:14 final size:14
Alignment explanation
Indices: 76209334--76209366 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
76209324 AATTTTATTT
76209334 TAAAAA-AATTATAA
1 TAAAAATAATT-TAA
76209348 TAAAAATAATTTAA
1 TAAAAATAATTTAA
76209362 TAAAA
1 TAAAA
76209367 CATACTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
TAAAAATAATTTAA
Found at i:76220497 original size:7 final size:7
Alignment explanation
Indices: 76220485--76220511 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
76220475 CCATTTTCGT
76220485 TGCAAGG
1 TGCAAGG
76220492 TGCAAGG
1 TGCAAGG
76220499 TGCAAGG
1 TGCAAGG
76220506 TGCAAG
1 TGCAAG
76220512 TTCGATTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.15, G:0.41, T:0.15
Consensus pattern (7 bp):
TGCAAGG
Found at i:76223336 original size:16 final size:16
Alignment explanation
Indices: 76223317--76223350 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
76223307 AGAGGGATTA
76223317 TACTGAAGTAAAAGGG
1 TACTGAAGTAAAAGGG
76223333 TACTGAAGTAAAAGGG
1 TACTGAAGTAAAAGGG
76223349 TA
1 TA
76223351 ATAAAAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.44, C:0.06, G:0.29, T:0.21
Consensus pattern (16 bp):
TACTGAAGTAAAAGGG
Found at i:76228402 original size:16 final size:16
Alignment explanation
Indices: 76228381--76228411 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76228371 TAACATTACT
76228381 TTTATTTTTATTTTTG
1 TTTATTTTTATTTTTG
*
76228397 TTTATTTTTGTTTTT
1 TTTATTTTTATTTTT
76228412 TTCTGCCATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.00, G:0.06, T:0.84
Consensus pattern (16 bp):
TTTATTTTTATTTTTG
Found at i:76230117 original size:18 final size:17
Alignment explanation
Indices: 76230085--76230128 Score: 63
Period size: 19 Copynumber: 2.5 Consensus size: 17
76230075 TTGAATATTT
76230085 TTTTTTAAAATTAATAGA
1 TTTTTTAAAATTAATA-A
76230103 TATTTTTAAAA-TAATAA
1 T-TTTTTAAAATTAATAA
76230120 TTTTTTAAA
1 TTTTTTAAA
76230129 GTAAATAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.32
17 2 0.08
18 6 0.24
19 9 0.36
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (17 bp):
TTTTTTAAAATTAATAA
Found at i:76233066 original size:13 final size:13
Alignment explanation
Indices: 76233048--76233076 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
76233038 TTTAATTAAT
76233048 TCAAATTTAAAAC
1 TCAAATTTAAAAC
76233061 TCAAATTTAAAAC
1 TCAAATTTAAAAC
76233074 TCA
1 TCA
76233077 TAATCTTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.52, C:0.17, G:0.00, T:0.31
Consensus pattern (13 bp):
TCAAATTTAAAAC
Found at i:76236296 original size:21 final size:21
Alignment explanation
Indices: 76236272--76236311 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
76236262 TTCGGTGAAA
*
76236272 TTAAAATGAAGAAATTAAATG
1 TTAAAAAGAAGAAATTAAATG
*
76236293 TTAAAAAGATGAAATTAAA
1 TTAAAAAGAAGAAATTAAA
76236312 AAAATATAGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.12, T:0.28
Consensus pattern (21 bp):
TTAAAAAGAAGAAATTAAATG
Found at i:76246081 original size:105 final size:104
Alignment explanation
Indices: 76245890--76246334 Score: 488
Period size: 105 Copynumber: 4.2 Consensus size: 104
76245880 ATTATACGTG
* * *
76245890 AGGCTCGATGCCTTGCTTTCTCA-TCGTGTCAACAATAACTTCAGG-TTTAGAAACCA-T-CCTG
1 AGGCTCAATGCCTTGCTTTCTCATTC-TGCCAACAATATCTTC-GGCTTTAGAAACCATTCCCT-
* *
76245951 TCCTTGC-AGAGCACATCAATCAATGTATTATATGTGACAACATT
63 T-CTTGCAAGAG--CATCAATCAATATACTATATGTGACAACATT
* *
76245995 AGGCTCAATGCCTTGCTTTGTCATTCTGCCAACAATACCTTCGGCTTTAGAAACCATTCCCTTCT
1 AGGCTCAATGCCTTGCTTTCTCATTCTGCCAACAATATCTTCGGCTTTAGAAACCATTCCCTTCT
* * * *
76246060 TGCAGAGAGCATCGATGAATGTACTATATGTGACAACATC
66 TGCA-AGAGCATCAATCAATATACTATATGTGACAACATT
* * * * * *
76246100 AAGCTTAATGCCTTGCTTTGTCATTGTGCCAACGATATCTTCAGCTTTAGAAACCATTCCCTTCT
1 AGGCTCAATGCCTTGCTTTCTCATTCTGCCAACAATATCTTCGGCTTTAGAAACCATTCCCTTCT
76246165 TGCAA-AGCAGGTCAATCAATATACTATATGTGACAACATT
66 TGCAAGAGCA--TCAATCAATATACTATATGTGACAACATT
* * * ** * *
76246205 AGGCTCAACGCCTTGCTTTTTCATTGTGCCAAGGATATCTTTGGCTTTAGAAACCACTCCCTTCT
1 AGGCTCAATGCCTTGCTTTCTCATTCTGCCAACAATATCTTCGGCTTTAGAAACCATTCCCTTCT
* * * **
76246270 TGCAAAATGCATCGATCAATATAGTATATGTGATGACATT
66 TGCAAGA-GCATCAATCAATATACTATATGTGACAACATT
*
76246310 AGGCTTAATGCCTTGCTTTCTCATT
1 AGGCTCAATGCCTTGCTTTCTCATT
76246335 TCGAAGAAGA
Statistics
Matches: 297, Mismatches: 33, Indels: 20
0.85 0.09 0.06
Matches are distributed among these distances:
103 4 0.01
104 3 0.01
105 275 0.93
106 5 0.02
107 10 0.03
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (104 bp):
AGGCTCAATGCCTTGCTTTCTCATTCTGCCAACAATATCTTCGGCTTTAGAAACCATTCCCTTCT
TGCAAGAGCATCAATCAATATACTATATGTGACAACATT
Found at i:76246195 original size:210 final size:210
Alignment explanation
Indices: 76245897--76246334 Score: 585
Period size: 210 Copynumber: 2.1 Consensus size: 210
76245887 GTGAGGCTCG
* * * *
76245897 ATGCCTTGCTTTCTCATCGTGTCAACAATAACTTCAGGTTTAGAAACCATCCTGTCCTTGCAGAG
1 ATGCCTTGCTTTCTCATTGTGCCAACAATAACTTCAGCTTTAGAAACCATCCTGTCCTTGCAAAG
* * *
76245962 CACATCAATCAATGTATTATATGTGACAACATTAGGCTCAATGCCTTGCTTTGTCATTCTGCCAA
66 CACATCAATCAATATACTATATGTGACAACATTAGGCTCAACGCCTTGCTTTGTCATTCTGCCAA
* * * *
76246027 CAATACCTTCGGCTTTAGAAACCATTCCCTTCTTGCAGAGA-GCATCGATGAATGTACTATATGT
131 CAATACCTTCGGCTTTAGAAACCACTCCCTTCTTGCA-AAATGCATCGATCAATATACTATATGT
76246091 GACAACATCAAGCTTA
195 GACAACATCAAGCTTA
* * *
76246107 ATGCCTTGCTTTGTCATTGTGCCAACGATATCTTCAGCTTTAGAAACCATTCCCT-T-CTTGCAA
1 ATGCCTTGCTTTCTCATTGTGCCAACAATAACTTCAGCTTTAGAAACCA-T-CCTGTCCTTGCAA
** * *
76246170 AGCAGGTCAATCAATATACTATATGTGACAACATTAGGCTCAACGCCTTGCTTTTTCATTGTGCC
64 AGCACATCAATCAATATACTATATGTGACAACATTAGGCTCAACGCCTTGCTTTGTCATTCTGCC
** * * *
76246235 AAGGATATCTTTGGCTTTAGAAACCACTCCCTTCTTGCAAAATGCATCGATCAATATAGTATATG
129 AACAATACCTTCGGCTTTAGAAACCACTCCCTTCTTGCAAAATGCATCGATCAATATACTATATG
** * *
76246300 TGATGACATTAGGCTTA
194 TGACAACATCAAGCTTA
76246317 ATGCCTTGCTTTCTCATT
1 ATGCCTTGCTTTCTCATT
76246335 TCGAAGAAGA
Statistics
Matches: 197, Mismatches: 28, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
209 2 0.01
210 190 0.96
211 2 0.01
212 3 0.02
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (210 bp):
ATGCCTTGCTTTCTCATTGTGCCAACAATAACTTCAGCTTTAGAAACCATCCTGTCCTTGCAAAG
CACATCAATCAATATACTATATGTGACAACATTAGGCTCAACGCCTTGCTTTGTCATTCTGCCAA
CAATACCTTCGGCTTTAGAAACCACTCCCTTCTTGCAAAATGCATCGATCAATATACTATATGTG
ACAACATCAAGCTTA
Found at i:76253902 original size:46 final size:48
Alignment explanation
Indices: 76253830--76253932 Score: 147
Period size: 46 Copynumber: 2.2 Consensus size: 48
76253820 GACAGGATAG
* * *
76253830 GACAGAAATGAGCCATGTAAGTCCATATCAT-T-TATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
*
76253876 GACAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
*
76253924 GACATGAAT
1 GACAGGAAT
76253933 AATTCATGTA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
46 28 0.56
47 1 0.02
48 21 0.42
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
Found at i:76253941 original size:48 final size:46
Alignment explanation
Indices: 76253830--76253949 Score: 141
Period size: 48 Copynumber: 2.6 Consensus size: 46
76253820 GACAGGATAG
* * *
76253830 GACAGAAATGAGCCATGTAAGTCCATATCATTTATATGGCTTTGGA
1 GACAGGAATAAGCCATGTAAGTCCATATCATTTATATGGCATTGGA
* * *
76253876 GACAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATTGGA
1 GACAGGAATAAGCCATGTAAGTCCATATCAT-T-TATATGGCATTGGA
* **
76253924 GACATGAATAATTCATGTAAGTCCAT
1 GACAGGAATAAGCCATGTAAGTCCAT
76253950 GTCGAAGACA
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 28 0.44
47 1 0.02
48 34 0.54
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (46 bp):
GACAGGAATAAGCCATGTAAGTCCATATCATTTATATGGCATTGGA
Found at i:76274692 original size:27 final size:29
Alignment explanation
Indices: 76274634--76274697 Score: 80
Period size: 27 Copynumber: 2.3 Consensus size: 29
76274624 CAATTAGACT
* *
76274634 TTAAATTTTCAAACAAATAAGTTAAAATA
1 TTAAATTTTCAAACAAATAAGTAAAAAGA
76274663 TTAAATTCTT-AAA-AAAT-AGTAAAAAGA
1 TTAAATT-TTCAAACAAATAAGTAAAAAGA
76274690 TTAAATTT
1 TTAAATTT
76274698 CTAAAGTTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
26 1 0.03
27 15 0.47
28 4 0.12
29 10 0.31
30 2 0.06
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.36
Consensus pattern (29 bp):
TTAAATTTTCAAACAAATAAGTAAAAAGA
Found at i:76279063 original size:32 final size:31
Alignment explanation
Indices: 76279009--76279068 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 31
76278999 TTTTTTGTGT
*
76279009 TTAATTTAAAATTTTTGGTTTATTTAATATTA
1 TTAATTTAAAATTTTTAGTTTA-TTAATATTA
** *
76279041 TTAATTTCGAATTTTTATTTTATTAATA
1 TTAATTTAAAATTTTTAGTTTATTAATA
76279069 GAATAAATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
31 6 0.25
32 18 0.75
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (31 bp):
TTAATTTAAAATTTTTAGTTTATTAATATTA
Found at i:76283004 original size:17 final size:17
Alignment explanation
Indices: 76282982--76283018 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
76282972 ATGCATACCT
*
76282982 TAAAATTTTTAAGTGTA
1 TAAAATTTTTAAGTATA
76282999 TAAAATTTTTAAGTATA
1 TAAAATTTTTAAGTATA
76283016 TAA
1 TAA
76283019 TTACACCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (17 bp):
TAAAATTTTTAAGTATA
Found at i:76285510 original size:14 final size:14
Alignment explanation
Indices: 76285491--76285518 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
76285481 TAGTGTAACT
76285491 TTTGTTGATGTACA
1 TTTGTTGATGTACA
76285505 TTTGTTGATGTACA
1 TTTGTTGATGTACA
76285519 AAGACAGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.21, T:0.50
Consensus pattern (14 bp):
TTTGTTGATGTACA
Found at i:76288856 original size:30 final size:29
Alignment explanation
Indices: 76288814--76288887 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 29
76288804 AAAATTTTAA
*
76288814 TAAATAAAAAATATATAAATTTATTAATTAT
1 TAAAT-AAAAATATATAAATGTA-TAATTAT
*
76288845 TAAATAAAAATAATATAAATGTATATTTAT
1 TAAATAAAAAT-ATATAAATGTATAATTAT
* *
76288875 TTAAGAAAAATAT
1 TAAATAAAAATAT
76288888 GGGTGACTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
29 2 0.05
30 21 0.55
31 15 0.39
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (29 bp):
TAAATAAAAATATATAAATGTATAATTAT
Found at i:76292158 original size:16 final size:16
Alignment explanation
Indices: 76292137--76292168 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
76292127 ATTAAAATAA
*
76292137 AATTAAAATATTAAAT
1 AATTAAAATAATAAAT
76292153 AATTAAAATAATAAAT
1 AATTAAAATAATAAAT
76292169 TATATTTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
AATTAAAATAATAAAT
Found at i:76292255 original size:31 final size:31
Alignment explanation
Indices: 76292220--76292283 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 31
76292210 TGTTTAATAA
* * * *
76292220 TATTAAAAATATTATATTTTTTAGCTTGATT
1 TATTAAAAATATAATAATATTAAGCTTGATT
**
76292251 TATTATCAATATAATAATATTAAGCTTGATT
1 TATTAAAAATATAATAATATTAAGCTTGATT
76292282 TA
1 TA
76292284 AATTAATGTT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.39, C:0.05, G:0.06, T:0.50
Consensus pattern (31 bp):
TATTAAAAATATAATAATATTAAGCTTGATT
Found at i:76298074 original size:2 final size:2
Alignment explanation
Indices: 76298069--76298106 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
76298059 ATATATTAAA
* *
76298069 AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76298107 TAAAAATTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76298605 original size:23 final size:23
Alignment explanation
Indices: 76298578--76298648 Score: 72
Period size: 23 Copynumber: 3.0 Consensus size: 23
76298568 GCAAAAACAG
76298578 ATTTAAATAATAAAATATTTTAA
1 ATTTAAATAATAAAATATTTTAA
* * *
76298601 ATTTAATTATTAAAATATTTAAA
1 ATTTAAATAATAAAATATTTTAA
* *
76298624 AATTAATATAA-AATTATATTTTAA
1 ATTTAA-ATAATAA-AATATTTTAA
76298648 A
1 A
76298649 CAATGAAATT
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
23 27 0.71
24 11 0.29
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
ATTTAAATAATAAAATATTTTAA
Found at i:76300291 original size:13 final size:12
Alignment explanation
Indices: 76300244--76300291 Score: 50
Period size: 11 Copynumber: 4.2 Consensus size: 12
76300234 TTTTTACTAC
*
76300244 TTAAAAATATAC
1 TTAAAAATATAT
76300256 TT-AAAATAT-T
1 TTAAAAATATAT
76300266 TT--AAATATAT
1 TTAAAAATATAT
76300276 TTAAAAATAGTAT
1 TTAAAAATA-TAT
76300289 TTA
1 TTA
76300292 TTCATTTAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
9 6 0.19
10 5 0.16
11 7 0.23
12 7 0.23
13 6 0.19
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (12 bp):
TTAAAAATATAT
Found at i:76308257 original size:81 final size:81
Alignment explanation
Indices: 76308152--76308310 Score: 221
Period size: 81 Copynumber: 2.0 Consensus size: 81
76308142 CAAGAGCTTC
* ** *
76308152 AAATTTTGCAAGTACAAGTTAAATCATTGCGTAAAAGACTTAAATATTCAATTTAATAATTCAGT
1 AAATTTTGCAAGTACAAGTCAAATCACCGCGTAAAAGACTTAAATAGTCAATTTAATAATTCAGT
76308217 ATCTTTT-CCAAATCTA
66 AT-TTTTCCCAAATCTA
** * * *
76308233 AAATTTTGCAAGTACAAGTCAAATCACCGTTTAAAAGACTTCAATAGTCAATTTAATATTTTAGT
1 AAATTTTGCAAGTACAAGTCAAATCACCGCGTAAAAGACTTAAATAGTCAATTTAATAATTCAGT
76308298 ATTTTTCCCAAAT
66 ATTTTTCCCAAAT
76308311 TTAATTCATG
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
80 4 0.06
81 64 0.94
ACGTcount: A:0.40, C:0.14, G:0.09, T:0.37
Consensus pattern (81 bp):
AAATTTTGCAAGTACAAGTCAAATCACCGCGTAAAAGACTTAAATAGTCAATTTAATAATTCAGT
ATTTTTCCCAAATCTA
Found at i:76313341 original size:46 final size:46
Alignment explanation
Indices: 76313282--76313455 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
76313272 TTGGGCATCC
76313282 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT-T
1 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* * * * *
76313327 CGAACTTGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCT
1 -GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCT
* *
76313375 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCT
1 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
76313421 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
1 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
76313456 CGGGTTACAT
Statistics
Matches: 106, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.58
47 25 0.24
48 4 0.04
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (46 bp):
GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
Found at i:76313434 original size:93 final size:93
Alignment explanation
Indices: 76313275--76313446 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
76313265 GGAATATTTG
* * *
76313275 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTTGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTCGAACTCGTTGAG
76313340 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
76313368 GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC-CTGAGCTCGTTGA
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTC-GAACTCGTTGA
76313432 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
76313447 ACTTATGGAC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.20, C:0.19, G:0.31, T:0.30
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:76315972 original size:16 final size:16
Alignment explanation
Indices: 76315937--76315975 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
76315927 TGAATTACTA
* *
76315937 ATTACAGCTCTATTAT
1 ATTACAGCCCTATTAC
*
76315953 ATTACAGCCCTATTCC
1 ATTACAGCCCTATTAC
76315969 ATTACAG
1 ATTACAG
76315976 TGAACCAAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.31, C:0.26, G:0.08, T:0.36
Consensus pattern (16 bp):
ATTACAGCCCTATTAC
Found at i:76317913 original size:35 final size:35
Alignment explanation
Indices: 76317871--76317942 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
76317861 ATAATGAAAG
76317871 ATGAACGTTATGAAGTTTATAGTATTGCAAATTCA
1 ATGAACGTTATGAAGTTTATAGTATTGCAAATTCA
76317906 ATGAACGTTATGAAGTTTATAGTATTGCAAATTCA
1 ATGAACGTTATGAAGTTTATAGTATTGCAAATTCA
76317941 AT
1 AT
76317943 CTTTTTTGGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.38
Consensus pattern (35 bp):
ATGAACGTTATGAAGTTTATAGTATTGCAAATTCA
Found at i:76327327 original size:15 final size:15
Alignment explanation
Indices: 76327307--76327338 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
76327297 GTCCATTTTG
76327307 AGGTTAATATGAATC
1 AGGTTAATATGAATC
76327322 AGGTTAATATGAATC
1 AGGTTAATATGAATC
76327337 AG
1 AG
76327339 CTTTTCATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.06, G:0.22, T:0.31
Consensus pattern (15 bp):
AGGTTAATATGAATC
Found at i:76327936 original size:13 final size:13
Alignment explanation
Indices: 76327920--76327946 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
76327910 AGGGGTTAGA
76327920 ATAATTCAATAGG
1 ATAATTCAATAGG
76327933 ATAATTCAATAGG
1 ATAATTCAATAGG
76327946 A
1 A
76327947 GAACATAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.07, G:0.15, T:0.30
Consensus pattern (13 bp):
ATAATTCAATAGG
Found at i:76329110 original size:220 final size:219
Alignment explanation
Indices: 76328729--76329133 Score: 521
Period size: 220 Copynumber: 1.8 Consensus size: 219
76328719 TGCCTTTTGG
*** * * * *
76328729 ACCTTCTAAAATTTATAGAATTGTAAGTTAATATTGTAAAATTACAGTTCGGCCCCTTAAAATGA
1 ACCTTCTAAAATTTATAGAATCACAAGTTAAAATGGTAAAATTACAATTCGACCCCTTAAAATGA
* ** **
76328794 TAAAATTTTGATTTAATTCTTGTAGAAACTATAAAAATATAAACTAATATATTGGTGAAATTGTA
66 TAAAATTTTGATTTAATTCTTCTAGAAACTATAAAAATATAAACTAATATAACGAAGAAATTGTA
*
76328859 TTTTAACTCTTATACAAAGACATAACTTATTTGGCCCTCTAAAAAAAATTT-TAGCCCCCTTTAA
131 TTTTAACTCTTATACAAAGACATAACTTATTTGACCC-CTAAAAAAAATTTCTAGCCCCCTTTAA
76328923 AATGGAAAAAAAAATTCAGTTTTAA
195 AATGGAAAAAAAAATTCAGTTTTAA
* * **
76328948 ACCTTCTAAAATTTATAGAATCACAAGTTAAAAGTGGTAAAATTGCAATTTGACTTCTTAAAATG
1 ACCTTCTAAAATTTATAGAATCACAAGTTAAAA-TGGTAAAATTACAATTCGACCCCTTAAAATG
* * *
76329013 ATAAAATTTTGATTTAA-TCATTCTAGAAACTATAAAGATGTAAATTAATATAACGAAGAAATTG
65 ATAAAATTTTGATTTAATTC-TTCTAGAAACTATAAAAATATAAACTAATATAACGAAGAAATTG
* * * *
76329077 TGTTTTAA-TTTTGAT-CAAAGTATATAACTTATTTGACCCCTAAAAAGAATTTCTAGC
129 TATTTTAACTCTT-ATACAAAG-ACATAACTTATTTGACCCCTAAAAAAAATTTCTAGC
76329134 TTTGCCACCC
Statistics
Matches: 157, Mismatches: 24, Indels: 9
0.83 0.13 0.05
Matches are distributed among these distances:
219 51 0.32
220 106 0.68
ACGTcount: A:0.42, C:0.12, G:0.11, T:0.36
Consensus pattern (219 bp):
ACCTTCTAAAATTTATAGAATCACAAGTTAAAATGGTAAAATTACAATTCGACCCCTTAAAATGA
TAAAATTTTGATTTAATTCTTCTAGAAACTATAAAAATATAAACTAATATAACGAAGAAATTGTA
TTTTAACTCTTATACAAAGACATAACTTATTTGACCCCTAAAAAAAATTTCTAGCCCCCTTTAAA
ATGGAAAAAAAAATTCAGTTTTAA
Found at i:76336184 original size:59 final size:59
Alignment explanation
Indices: 76336114--76336231 Score: 227
Period size: 59 Copynumber: 2.0 Consensus size: 59
76336104 GCCAAATGGA
*
76336114 AAAGCAAGAGATGAGCTTGAAATGGAACTTACAAATGGTGGCGGCACTACCAGAACAAC
1 AAAGCAAGAGATGAGCTTAAAATGGAACTTACAAATGGTGGCGGCACTACCAGAACAAC
76336173 AAAGCAAGAGATGAGCTTAAAATGGAACTTACAAATGGTGGCGGCACTACCAGAACAAC
1 AAAGCAAGAGATGAGCTTAAAATGGAACTTACAAATGGTGGCGGCACTACCAGAACAAC
76336232 TTAATTTATA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.42, C:0.19, G:0.25, T:0.15
Consensus pattern (59 bp):
AAAGCAAGAGATGAGCTTAAAATGGAACTTACAAATGGTGGCGGCACTACCAGAACAAC
Found at i:76336275 original size:42 final size:42
Alignment explanation
Indices: 76336228--76336312 Score: 143
Period size: 42 Copynumber: 2.0 Consensus size: 42
76336218 ACTACCAGAA
*
76336228 CAACTTAATTTATATATAATTTGTGTAAATAAGCAATATCAC
1 CAACTTAATTTACATATAATTTGTGTAAATAAGCAATATCAC
* *
76336270 CAACTTAATTTACGTATAATTTGTGTAAGTAAGCAATATCAC
1 CAACTTAATTTACATATAATTTGTGTAAATAAGCAATATCAC
76336312 C
1 C
76336313 TTTATTGGCT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.40, C:0.14, G:0.09, T:0.36
Consensus pattern (42 bp):
CAACTTAATTTACATATAATTTGTGTAAATAAGCAATATCAC
Found at i:76336621 original size:22 final size:22
Alignment explanation
Indices: 76336595--76336672 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
76336585 AGTGATATAG
76336595 ATTAAAATATTTGAGTGCTTAA
1 ATTAAAATATTTGAGTGCTTAA
* * * **
76336617 ATTAAAAGATATGAAAATATATTTATA
1 ATTAAAATATTTG---A-GTGCTTA-A
76336644 ATTAAAATATTTGAGTGCTTAA
1 ATTAAAATATTTGAGTGCTTAA
76336666 ATTAAAA
1 ATTAAAA
76336673 GATATGCCCA
Statistics
Matches: 41, Mismatches: 10, Indels: 10
0.67 0.16 0.16
Matches are distributed among these distances:
22 19 0.46
23 4 0.10
24 1 0.02
25 1 0.02
26 4 0.10
27 12 0.29
ACGTcount: A:0.49, C:0.03, G:0.10, T:0.38
Consensus pattern (22 bp):
ATTAAAATATTTGAGTGCTTAA
Found at i:76338648 original size:31 final size:31
Alignment explanation
Indices: 76338613--76338673 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
76338603 ATGAGTCAAC
*
76338613 TAAAAGGAATGTTGCCAAACTTGGTCACTCA
1 TAAAAGGAATGTTGCCAAACTTGATCACTCA
76338644 TAAAAGGAATGTTGCCAAACTTGATCACTC
1 TAAAAGGAATGTTGCCAAACTTGATCACTC
76338674 GATTCTAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (31 bp):
TAAAAGGAATGTTGCCAAACTTGATCACTCA
Found at i:76343719 original size:87 final size:86
Alignment explanation
Indices: 76343618--76343776 Score: 273
Period size: 87 Copynumber: 1.8 Consensus size: 86
76343608 AATTGATAGT
*
76343618 TTTTATATTGAAATCTATACTATTAAAAATCAAAATGATGGTTTTTATTTTTTAAATTTTATGTG
1 TTTTATATTGAAATCTAGACTATTAAAAATCAAAATGATGGTTTTTA-TTTTTAAATTTTATGTG
76343683 CAATTAATTTTGAAGTTTGAAG
65 CAATTAATTTTGAAGTTTGAAG
* * *
76343705 TTTTATATTGAAATCTAGACTATTAAAAATCAAATTGATGGTTTTTATTTTTAAATTTTATTTGT
1 TTTTATATTGAAATCTAGACTATTAAAAATCAAAATGATGGTTTTTATTTTTAAATTTTATGTGC
76343770 AATTAAT
66 AATTAAT
76343777 ATCGATTTAA
Statistics
Matches: 68, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
86 23 0.34
87 45 0.66
ACGTcount: A:0.36, C:0.04, G:0.10, T:0.50
Consensus pattern (86 bp):
TTTTATATTGAAATCTAGACTATTAAAAATCAAAATGATGGTTTTTATTTTTAAATTTTATGTGC
AATTAATTTTGAAGTTTGAAG
Found at i:76343854 original size:22 final size:22
Alignment explanation
Indices: 76343826--76343877 Score: 95
Period size: 22 Copynumber: 2.3 Consensus size: 22
76343816 AAAGTTATAA
76343826 AAAAAGATTAGAATCAAAATCC
1 AAAAAGATTAGAATCAAAATCC
76343848 AAAAAGATTAGAATCAAAATCC
1 AAAAAGATTAGAATCAAAATCC
76343870 AAACAAGA
1 AAA-AAGA
76343878 ATTGAGACTA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 25 0.86
23 4 0.14
ACGTcount: A:0.62, C:0.13, G:0.10, T:0.15
Consensus pattern (22 bp):
AAAAAGATTAGAATCAAAATCC
Found at i:76347948 original size:59 final size:59
Alignment explanation
Indices: 76347878--76347995 Score: 227
Period size: 59 Copynumber: 2.0 Consensus size: 59
76347868 GCCAAATGGA
*
76347878 AAAGCAAGAGATGAGCTTGAAATGGAACTTACAAATGGTGGCGGCACTACCAGAACAAC
1 AAAGCAAGAGATGAGCTTAAAATGGAACTTACAAATGGTGGCGGCACTACCAGAACAAC
76347937 AAAGCAAGAGATGAGCTTAAAATGGAACTTACAAATGGTGGCGGCACTACCAGAACAAC
1 AAAGCAAGAGATGAGCTTAAAATGGAACTTACAAATGGTGGCGGCACTACCAGAACAAC
76347996 TTAATTTATA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.42, C:0.19, G:0.25, T:0.15
Consensus pattern (59 bp):
AAAGCAAGAGATGAGCTTAAAATGGAACTTACAAATGGTGGCGGCACTACCAGAACAAC
Found at i:76348039 original size:42 final size:42
Alignment explanation
Indices: 76347992--76348076 Score: 143
Period size: 42 Copynumber: 2.0 Consensus size: 42
76347982 ACTACCAGAA
*
76347992 CAACTTAATTTATATATAATTTGTGTAAATAAGCAATATCAC
1 CAACTTAATTTACATATAATTTGTGTAAATAAGCAATATCAC
* *
76348034 CAACTTAATTTACGTATAATTTGTGTAAGTAAGCAATATCAC
1 CAACTTAATTTACATATAATTTGTGTAAATAAGCAATATCAC
76348076 C
1 C
76348077 TTTATTGGCT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.40, C:0.14, G:0.09, T:0.36
Consensus pattern (42 bp):
CAACTTAATTTACATATAATTTGTGTAAATAAGCAATATCAC
Found at i:76349899 original size:25 final size:26
Alignment explanation
Indices: 76349871--76349926 Score: 60
Period size: 27 Copynumber: 2.2 Consensus size: 26
76349861 TGAATTTATT
*
76349871 TTGTATAAAT-TTTACATGCTTGAAG
1 TTGTATAAATGTATACATGCTTGAAG
* * *
76349896 TTGTTTCAATGGTATGCATGCTTGAAG
1 TTGTATAAAT-GTATACATGCTTGAAG
76349923 TTGT
1 TTGT
76349927 TTCAATGGTA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
25 8 0.32
27 17 0.68
ACGTcount: A:0.25, C:0.09, G:0.21, T:0.45
Consensus pattern (26 bp):
TTGTATAAATGTATACATGCTTGAAG
Found at i:76349915 original size:27 final size:27
Alignment explanation
Indices: 76349885--76349940 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
76349875 ATAAATTTTA
76349885 CATGCTTGAAGTTGTTTCAATGGTATG
1 CATGCTTGAAGTTGTTTCAATGGTATG
76349912 CATGCTTGAAGTTGTTTCAATGGTATG
1 CATGCTTGAAGTTGTTTCAATGGTATG
76349939 CA
1 CA
76349941 CAAATTAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.23, C:0.12, G:0.25, T:0.39
Consensus pattern (27 bp):
CATGCTTGAAGTTGTTTCAATGGTATG
Found at i:76352105 original size:83 final size:83
Alignment explanation
Indices: 76351966--76352123 Score: 266
Period size: 83 Copynumber: 1.9 Consensus size: 83
76351956 GCCCCCCACT
76351966 CCCTAAAATGAAAAATTGCAGCTTTAGACTCTCCAAAATTCATAAAATCCTAAGTTAATATATGG
1 CCCTAAAATGAAAAATTGCAGCTTTAGACTCTCCAAAATTCATAAAATCCTAAGTTAATATATGG
76352031 TAAA-ATTATAGTTTGCCC
66 -AAAGATTATAGTTTGCCC
* *
76352049 CCCTAAAATGAAAAATTGCAGCTTTAGAC-CATTCAAAATTCATAATATCCTAAGTTAATATATG
1 CCCTAAAATGAAAAATTGCAGCTTTAGACTC-TCCAAAATTCATAAAATCCTAAGTTAATATATG
76352113 GAAAGATTATA
65 GAAAGATTATA
76352124 CCCCAAATGC
Statistics
Matches: 71, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
82 4 0.06
83 67 0.94
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.31
Consensus pattern (83 bp):
CCCTAAAATGAAAAATTGCAGCTTTAGACTCTCCAAAATTCATAAAATCCTAAGTTAATATATGG
AAAGATTATAGTTTGCCC
Found at i:76353995 original size:64 final size:63
Alignment explanation
Indices: 76353894--76354018 Score: 180
Period size: 64 Copynumber: 2.0 Consensus size: 63
76353884 ATCATATATG
** * * *
76353894 CTTGATACAATAACTACTTATAATCCCTTCTAGTCCCATAAATAAATATATATATATGTTTTTT
1 CTTGATACAATAACTACCCATAATCCCCTCTAGTCCCATAAATAAAAATATA-ATACGTTTTTT
76353958 CTTGATACAATAACTACCCATAATCCCCTCTCA-TCCCATAAATAAAAATATAATACGTTTT
1 CTTGATACAATAACTACCCATAATCCCCTCT-AGTCCCATAAATAAAAATATAATACGTTTT
76354019 AAGACATTCG
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
63 8 0.15
64 46 0.84
65 1 0.02
ACGTcount: A:0.38, C:0.22, G:0.04, T:0.37
Consensus pattern (63 bp):
CTTGATACAATAACTACCCATAATCCCCTCTAGTCCCATAAATAAAAATATAATACGTTTTTT
Found at i:76355213 original size:17 final size:17
Alignment explanation
Indices: 76355191--76355225 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
76355181 GGGACCTACA
76355191 ACAATAGAAAAATAATT
1 ACAATAGAAAAATAATT
76355208 ACAATAGAAAAATAATT
1 ACAATAGAAAAATAATT
76355225 A
1 A
76355226 GGTCGATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.66, C:0.06, G:0.06, T:0.23
Consensus pattern (17 bp):
ACAATAGAAAAATAATT
Done.