Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 246 of 250
Found at i:76361603 original size:39 final size:41
Alignment explanation
Indices: 76361519--76361604 Score: 97
Period size: 42 Copynumber: 2.1 Consensus size: 41
76361509 AAAAATTATA
* * *
76361519 TTTAATACAATAAAATATTTATTATTATTATTTTTTATTTTT
1 TTTAATACAATAAAATA-TTATTATTATTATTTATGATTTGT
*
76361561 TTTAATATAATAAAATA-T-TTATTA-TATTTATGATTGTGT
1 TTTAATACAATAAAATATTATTATTATTATTTATGATT-TGT
76361600 TTTAA
1 TTTAA
76361605 AGAACTTTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
38 9 0.23
39 13 0.33
40 1 0.03
42 16 0.41
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.58
Consensus pattern (41 bp):
TTTAATACAATAAAATATTATTATTATTATTTATGATTTGT
Found at i:76366282 original size:31 final size:34
Alignment explanation
Indices: 76366242--76366307 Score: 102
Period size: 31 Copynumber: 2.0 Consensus size: 34
76366232 CTATTAATCT
76366242 AATGACTTAAATAAAAAAA-TTT-AAATAA-TTC
1 AATGACTTAAATAAAAAAACTTTCAAATAACTTC
*
76366273 AATGGCTTAAATAAAAAAACTTTCAAATAACTTC
1 AATGACTTAAATAAAAAAACTTTCAAATAACTTC
76366307 A
1 A
76366308 TCATCATTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
31 18 0.58
32 3 0.10
33 6 0.19
34 4 0.13
ACGTcount: A:0.55, C:0.11, G:0.05, T:0.30
Consensus pattern (34 bp):
AATGACTTAAATAAAAAAACTTTCAAATAACTTC
Found at i:76370157 original size:2 final size:2
Alignment explanation
Indices: 76370152--76370185 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
76370142 AGTTTTCCTC
76370152 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
76370186 TTAACAATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:76372214 original size:32 final size:33
Alignment explanation
Indices: 76372178--76372245 Score: 79
Period size: 33 Copynumber: 2.1 Consensus size: 33
76372168 ATAGAAAGTA
76372178 AAATAT-TATTAGATATTATTA-T-ATAATAATTT
1 AAATATGTATTA-ATATTATTATTAAT-ATAATTT
* *
76372210 AAATATGTTTTATTATTATTATTAATATAATTT
1 AAATATGTATTAATATTATTATTAATATAATTT
76372243 AAA
1 AAA
76372246 AATATTTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
32 14 0.45
33 15 0.48
34 2 0.06
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (33 bp):
AAATATGTATTAATATTATTATTAATATAATTT
Found at i:76372262 original size:33 final size:35
Alignment explanation
Indices: 76372191--76372262 Score: 87
Period size: 33 Copynumber: 2.1 Consensus size: 35
76372181 TATTATTAGA
* * *
76372191 TATTATTATATAATAATTTAAATATGTTTTATTAT
1 TATTATTATATAATAATTTAAAAATATTTAATTAT
76372226 TATTATTA-AT-ATAATTTAAAAATATTTAAATT-T
1 TATTATTATATAATAATTTAAAAATATTT-AATTAT
76372259 TATT
1 TATT
76372263 GCATATGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
33 20 0.61
34 5 0.15
35 8 0.24
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (35 bp):
TATTATTATATAATAATTTAAAAATATTTAATTAT
Found at i:76372502 original size:21 final size:21
Alignment explanation
Indices: 76372463--76372519 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
76372453 CCGCTATTTC
* * *
76372463 TAATTTCACCGCTATAGT-AT
1 TAATCTCACCACTACAGTAAT
76372483 TCAATCTCACCACTACAGTAAT
1 T-AATCTCACCACTACAGTAAT
76372505 TAATCTCACCACTAC
1 TAATCTCACCACTAC
76372520 CATTGTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 1 0.03
21 28 0.88
22 3 0.09
ACGTcount: A:0.33, C:0.30, G:0.05, T:0.32
Consensus pattern (21 bp):
TAATCTCACCACTACAGTAAT
Found at i:76373346 original size:31 final size:31
Alignment explanation
Indices: 76373311--76373371 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
76373301 ATGAGTCAAC
*
76373311 TAAAAGGAATGTTGCCAAACTTGGTCACTCA
1 TAAAAGGAATGTTGCCAAACTTGATCACTCA
76373342 TAAAAGGAATGTTGCCAAACTTGATCACTC
1 TAAAAGGAATGTTGCCAAACTTGATCACTC
76373372 GATTCTAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (31 bp):
TAAAAGGAATGTTGCCAAACTTGATCACTCA
Found at i:76378419 original size:87 final size:86
Alignment explanation
Indices: 76378318--76378476 Score: 273
Period size: 87 Copynumber: 1.8 Consensus size: 86
76378308 AATTGATAGT
*
76378318 TTTTATATTGAAATCTATACTATTAAAAATCAAAATGATGGTTTTTATTTTTTAAATTTTATGTG
1 TTTTATATTGAAATCTAGACTATTAAAAATCAAAATGATGGTTTTTA-TTTTTAAATTTTATGTG
76378383 CAATTAATTTTGAAGTTTGAAG
65 CAATTAATTTTGAAGTTTGAAG
* * *
76378405 TTTTATATTGAAATCTAGACTATTAAAAATCAAATTGATGGTTTTTATTTTTAAATTTTATTTGT
1 TTTTATATTGAAATCTAGACTATTAAAAATCAAAATGATGGTTTTTATTTTTAAATTTTATGTGC
76378470 AATTAAT
66 AATTAAT
76378477 ATCGATTTAA
Statistics
Matches: 68, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
86 23 0.34
87 45 0.66
ACGTcount: A:0.36, C:0.04, G:0.10, T:0.50
Consensus pattern (86 bp):
TTTTATATTGAAATCTAGACTATTAAAAATCAAAATGATGGTTTTTATTTTTAAATTTTATGTGC
AATTAATTTTGAAGTTTGAAG
Found at i:76378554 original size:22 final size:22
Alignment explanation
Indices: 76378526--76378577 Score: 95
Period size: 22 Copynumber: 2.3 Consensus size: 22
76378516 AAAGTTATAA
76378526 AAAAAGATTAGAATCAAAATCC
1 AAAAAGATTAGAATCAAAATCC
76378548 AAAAAGATTAGAATCAAAATCC
1 AAAAAGATTAGAATCAAAATCC
76378570 AAACAAGA
1 AAA-AAGA
76378578 ATTGAGACTA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 25 0.86
23 4 0.14
ACGTcount: A:0.62, C:0.13, G:0.10, T:0.15
Consensus pattern (22 bp):
AAAAAGATTAGAATCAAAATCC
Found at i:76387498 original size:19 final size:20
Alignment explanation
Indices: 76387476--76387520 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
76387466 GTATCTTTCG
*
76387476 AATATCAAAGTCAAAC-TTA
1 AATATCAAAATCAAACATTA
*
76387495 AATAT-AAAATTAAACATTA
1 AATATCAAAATCAAACATTA
76387514 AA-ATCAA
1 AATATCAA
76387521 GTCCAAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.60, C:0.11, G:0.02, T:0.27
Consensus pattern (20 bp):
AATATCAAAATCAAACATTA
Found at i:76396150 original size:20 final size:21
Alignment explanation
Indices: 76396125--76396167 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
76396115 TTTAAGCTTA
76396125 AATTCAA-TTCAATATTTTTC
1 AATTCAATTTCAATATTTTTC
*
76396145 AATTCAATTTCAATTTTTTTC
1 AATTCAATTTCAATATTTTTC
76396166 AA
1 AA
76396168 ATAAAACACA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.35, C:0.14, G:0.00, T:0.51
Consensus pattern (21 bp):
AATTCAATTTCAATATTTTTC
Found at i:76398631 original size:20 final size:20
Alignment explanation
Indices: 76398606--76398647 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
76398596 TTATATGAAA
76398606 TTTGCACTTTTTTTCTTATG
1 TTTGCACTTTTTTTCTTATG
76398626 TTTGCACTTTTTTTCTTATG
1 TTTGCACTTTTTTTCTTATG
76398646 TT
1 TT
76398648 CTTCTTCTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.10, C:0.14, G:0.10, T:0.67
Consensus pattern (20 bp):
TTTGCACTTTTTTTCTTATG
Found at i:76401449 original size:6 final size:6
Alignment explanation
Indices: 76401436--76401465 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
76401426 AAAATAAAAA
76401436 TAAT-T TAATAT TAATAT TAATAT TAATAT T
1 TAATAT TAATAT TAATAT TAATAT TAATAT T
76401466 TTATAATTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.17
6 20 0.83
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (6 bp):
TAATAT
Found at i:76403180 original size:27 final size:28
Alignment explanation
Indices: 76403141--76403202 Score: 85
Period size: 27 Copynumber: 2.2 Consensus size: 28
76403131 AATTTTAACA
76403141 AAAAAATTAATTTA-TT-TTTTAATTTAAT
1 AAAAAATTAATTTACTTATTTT--TTTAAT
76403169 AAAAAATT-ATTTACTTATTTTTTTAAT
1 AAAAAATTAATTTACTTATTTTTTTAAT
76403196 AAAAAAT
1 AAAAAAT
76403203 AAAATATAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
27 18 0.56
28 10 0.31
29 4 0.12
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (28 bp):
AAAAAATTAATTTACTTATTTTTTTAAT
Found at i:76412951 original size:1 final size:1
Alignment explanation
Indices: 76412947--76413678 Score: 1095
Period size: 1 Copynumber: 732.0 Consensus size: 1
76412937 AAATTGGGGG
76412947 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
76413012 AAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* ** * *
76413077 AAAGAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAGAAAGAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
76413142 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
** *
76413207 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTAAAAAAAAAAAGAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * ** * * *
76413272 GAAAAAAAAGAAAAAAAACAAAAAAAAAACCAAAAAGAAAAAAAAAAAAAAAAGAAACAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* ** * * ** * * *
76413337 AAAAAAAGAAAAAAAAAAAAACCAAAAAAAGAAGAACCAAAACAAAAAAAGAAAAAAAAAAAAGA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
76413402 AAAAAAAAAAAAGAAACAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
76413467 AAAAAAAAAAAAAAAAAAAGACAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
76413532 CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * *
76413597 AAAAAAAAAAAAAAAAAGAAAAAAAAAAGAAGAAAAAAAAAAAAAAAAAAAAAAAGAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
76413662 AAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAA
76413679 NNNNNNNNNN
Statistics
Matches: 658, Mismatches: 73, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
1 658 1.00
ACGTcount: A:0.94, C:0.02, G:0.03, T:0.01
Consensus pattern (1 bp):
A
Found at i:76416041 original size:281 final size:270
Alignment explanation
Indices: 76415508--76416610 Score: 1156
Period size: 281 Copynumber: 4.0 Consensus size: 270
76415498 AAATCCCAAA
* * * * * *
76415508 AGTATAATTGGTGCATAACAATATAGATTAGCAGTCAGGTCAGCAATTTAAACCCTAATAAAAAA
1 AGTATAACTGGTGCATAACAAAATAAATTAGCAGTCAGGTTAGCAATTTAAACCCTCA-AAAAAT
* * * * *
76415573 AATTAATAAAGGTCAAT-TTTTTTTCACAATCTTCGATCCCTCATTC-A--AACAAATCTCCCAA
65 AA--ACT-AA-GT-AATCCTTTTTTCACATTCTTCGATCCCTCATTCAACCAACCAATCTCCTAA
* * * *
76415634 ACCACAAAACTAATAAATCCCCATTAAAAAAGTACCAAAAAAAAATTACTTCGAACTTAAACACT
125 ACC-CAAAACTAATAAA-ACCCATTAAACAAGTA-CAAAAAAAAAATACTTCGAACTTAAAAACT
* * * *
76415699 TAAAAAAAATCAAATTAGAACCATTAAAAGAACAAACTTTAAAGCAAAATACCTTGAGGGTCTGA
187 AAAAAAAAATCAAATTAGAACCATTAAAAGAACAAACATTAAAGCAAAATACCTCGAGGGCCTGA
* *
76415764 TTGGAGTAGTAGATGGAGG
252 TTGGAGGAGTAGATGAAGG
* * * * *
76415783 AGTGTAACTGATGCATAGCAAAATAAATTAACAGTCAGGTTAACAATTTAAACCCTAGCAAAAAA
1 AGTATAACTGGTGCATAACAAAATAAATTAGCAGTCAGGTTAGCAATTTAAACCCT--C-AAAAA
76415848 ATAAATCGTATAGGTAAATCCTTTTTTCACATTCTTCGATCCCTCATTCAACGCAACCAATCTCC
63 ATAAA-C-TA-A-GT-AATCCTTTTTTCACATTCTTCGATCCCTCATTCAAC-CAACCAATCTCC
* **
76415913 TAAACCCCAAACTAATAAAACCCATTAAACAAGTACAAAAAAAAAATACTTTTAACTTAAAAACT
122 TAAACCCAAAACTAATAAAACCCATTAAACAAGTACAAAAAAAAAATACTTCGAACTTAAAAACT
* *
76415978 GAAAAAAAAAATCAAATTAGAACCATTAAAAGAACAAACATTTAAGCAAAATACCTCGAGGGTCT
187 --AAAAAAAAATCAAATTAGAACCATTAAAAGAACAAACATTAAAGCAAAATACCTCGAGGGCCT
*
76416043 GATTGGAGGAGTGGATGAAGG
250 GATTGGAGGAGTAGATGAAGG
76416064 AGTATAACTGGTGCATAACAAAATAAATTAGCAGTCAGGTTAGCAATTTAAA-CC-C------T-
1 AGTATAACTGGTGCATAACAAAATAAATTAGCAGTCAGGTTAGCAATTTAAACCCTCAAAAAATA
* * *
76416120 AA-TAA-T--T-CTTTTATTCATATTCTTCGATCCCTCATTC-A--AACCAATCTCCTACACCCC
66 AACTAAGTAATCCTTTT-TTCACATTCTTCGATCCCTCATTCAACCAACCAATCTCCTAAACCCA
* *
76416177 AAACTAATAAAAGCCCATTAAACAAGTACAAAAAAAAATTACTTTGAACTTAAAAGTTAAAACAC
130 AAACTAATAAAA-CCCATTAAACAAGTACAAAAAAAAAATACTTCGAAC-------TTAAAA-AC
* *
76416242 TAAAAAAAAAATCAAATTAGAACCATTAAAAGAGCAAACATTAAAGCAAAATACCTGGAGGGCCT
186 T-AAAAAAAAATCAAATTAGAACCATTAAAAGAACAAACATTAAAGCAAAATACCTCGAGGGCCT
*
76416307 GATTGGAGGACTAGATGAAGG
250 GATTGGAGGAGTAGATGAAGG
*
76416328 AGTATAACTGGTGCATAACAAAATAAACTAGCAGTCAGGTTAGCAATTTAAACCCT-AATAAAA-
1 AGTATAACTGGTGCATAACAAAATAAATTAGCAGTCAGGTTAGCAATTTAAACCCTCAA-AAAAT
* *
76416391 AAACCATAAAAGTCAATCCTTTTTTTTACACATTCTTCTATCCCTCATTCAAAACAACCAATCTC
65 AAA-C-T--AAGT-AATCC--TTTTTT-CACATTCTTCGATCCCTCATTC-AACCAACCAATCTC
* *
76416456 CTAAACCCCAAACTAATAAAAACCCATTAAAGAAGTACAAAAGAAAAACATTACTTCGAACTTAA
121 CTAAACCCAAAACTAAT-AAAACCCATTAAACAAGTACAAAA-AAAAA-A-TACTTCGAACTTAA
* ** * * * *
76416521 ACAC-CGAAAAAAATTAAATTAGAACCGTTAAAAGAACAAGCATTAAAGCAAAATACCTCGAGCG
182 AAACTAAAAAAAAATCAAATTAGAACCATTAAAAGAACAAACATTAAAGCAAAATACCTCGAGGG
*
76416585 CCTGATTGGAGGAGTGGATGAAGG
247 CCTGATTGGAGGAGTAGATGAAGG
76416609 AG
1 AG
76416611 GAGAAGGGCG
Statistics
Matches: 710, Mismatches: 64, Indels: 102
0.81 0.07 0.12
Matches are distributed among these distances:
256 30 0.04
257 34 0.05
259 6 0.01
260 24 0.03
263 1 0.00
264 136 0.19
265 6 0.01
266 2 0.00
269 2 0.00
270 1 0.00
272 2 0.00
275 49 0.07
276 1 0.00
277 18 0.03
278 29 0.04
279 27 0.04
280 16 0.02
281 213 0.30
282 16 0.02
283 4 0.01
284 29 0.04
286 1 0.00
288 45 0.06
289 9 0.01
291 9 0.01
ACGTcount: A:0.45, C:0.19, G:0.12, T:0.24
Consensus pattern (270 bp):
AGTATAACTGGTGCATAACAAAATAAATTAGCAGTCAGGTTAGCAATTTAAACCCTCAAAAAATA
AACTAAGTAATCCTTTTTTCACATTCTTCGATCCCTCATTCAACCAACCAATCTCCTAAACCCAA
AACTAATAAAACCCATTAAACAAGTACAAAAAAAAAATACTTCGAACTTAAAAACTAAAAAAAAA
TCAAATTAGAACCATTAAAAGAACAAACATTAAAGCAAAATACCTCGAGGGCCTGATTGGAGGAG
TAGATGAAGG
Found at i:76416364 original size:264 final size:257
Alignment explanation
Indices: 76415868--76416610 Score: 886
Period size: 264 Copynumber: 2.8 Consensus size: 257
76415858 TAGGTAAATC
76415868 CTTTTTTCACATTCTTCGATCCCTCATTCAACGCAACCAATCTCCTAAACCCCAAACTAATAAAA
1 CTTTTTTCACATTCTTCGATCCCTCATTCAA--CAACCAATCTCCTAAACCCCAAACTAATAAAA
76415933 CCCATTAAACAAGTACAAAAAAAAAATACTTTTAACTTAAAAACTGAAAAAAAAAATCAAATTAG
64 CCCATTAAACAAGTACAAAAAAAAAATACTTTTAACTTAAAAACTGAAAAAAAAAATCAAATTAG
* * * *
76415998 AACCATTAAAAGAACAAACATTTAAGCAAAATACCTCGAGGGTCTGATTGGAGGAGTGGATGAAG
129 AACCATTAAAAGAACAAACATTAAAGCAAAATACCTCGAGGGCCTGATTGGAGGACTAGATGAAG
*
76416063 GAGTATAACTGGTGCATAACAAAATAAATTAGCAGTCAGGTTAGCAATTTAAACCCTAATAATT
194 GAGTATAACTGGTGCATAACAAAATAAACTAGCAGTCAGGTTAGCAATTTAAACCCTAATAATT
* *
76416127 CTTTTATTCATATTCTTCGATCCCTCATTC-A-AACCAATCTCCTACACCCCAAACTAATAAAAG
1 CTTTT-TTCACATTCTTCGATCCCTCATTCAACAACCAATCTCCTAAACCCCAAACTAATAAAA-
* *
76416190 CCCATTAAACAAGTACAAAAAAAAATTACTTTGAACTTAAAAGTTAAAACACT-AAAAAAAAAAT
64 CCCATTAAACAAGTACAAAAAAAAAATAC-TT----TT--AACTTAAAA-ACTGAAAAAAAAAAT
* *
76416254 CAAATTAGAACCATTAAAAGAGCAAACATTAAAGCAAAATACCTGGAGGGCCTGATTGGAGGACT
121 CAAATTAGAACCATTAAAAGAACAAACATTAAAGCAAAATACCTCGAGGGCCTGATTGGAGGACT
76416319 AGATGAAGGAGTATAACTGGTGCATAACAAAATAAACTAGCAGTCAGGTTAGCAATTTAAACCCT
186 AGATGAAGGAGTATAACTGGTGCATAACAAAATAAACTAGCAGTCAGGTTAGCAATTTAAACCC-
76416384 AATAAAAAAACCATAAAAGTCAAT
250 --T------A--AT--AA-T---T
*
76416408 CCTTTTTTTTACACATTCTTCTATCCCTCATTCAAAACAACCAATCTCCTAAACCCCAAACTAAT
1 -C--TTTTTT-CACATTCTTCGATCCCTCATTC--AACAACCAATCTCCTAAACCCCAAACTAAT
* ** * *
76416473 AAAAACCCATTAAAGAAGTACAAAAGAAAAACATTACTTCGAACTTAAACACCG---AAAAAAAT
60 -AAAACCCATTAAACAAGTACAAAA-AAAAA-A-TACTTTTAACTTAAAAACTGAAAAAAAAAAT
* * * * *
76416535 TAAATTAGAACCGTTAAAAGAACAAGCATTAAAGCAAAATACCTCGAGCGCCTGATTGGAGGAGT
121 CAAATTAGAACCATTAAAAGAACAAACATTAAAGCAAAATACCTCGAGGGCCTGATTGGAGGACT
*
76416600 GGATGAAGGAG
186 AGATGAAGGAG
76416611 GAGAAGGGCG
Statistics
Matches: 415, Mismatches: 29, Indels: 58
0.83 0.06 0.12
Matches are distributed among these distances:
256 30 0.07
257 28 0.07
258 2 0.00
259 6 0.01
260 23 0.06
262 2 0.00
264 141 0.34
265 3 0.01
267 1 0.00
273 1 0.00
275 2 0.00
277 2 0.00
278 1 0.00
281 77 0.19
282 1 0.00
283 4 0.01
284 31 0.07
287 1 0.00
288 45 0.11
289 9 0.02
290 2 0.00
291 3 0.01
ACGTcount: A:0.45, C:0.20, G:0.12, T:0.24
Consensus pattern (257 bp):
CTTTTTTCACATTCTTCGATCCCTCATTCAACAACCAATCTCCTAAACCCCAAACTAATAAAACC
CATTAAACAAGTACAAAAAAAAAATACTTTTAACTTAAAAACTGAAAAAAAAAATCAAATTAGAA
CCATTAAAAGAACAAACATTAAAGCAAAATACCTCGAGGGCCTGATTGGAGGACTAGATGAAGGA
GTATAACTGGTGCATAACAAAATAAACTAGCAGTCAGGTTAGCAATTTAAACCCTAATAATT
Found at i:76416554 original size:545 final size:534
Alignment explanation
Indices: 76415602--76416610 Score: 1425
Period size: 545 Copynumber: 1.9 Consensus size: 534
76415592 TTTTTCACAA
*
76415602 TCTTCGATCCCTCATTCAAACAAATCTCCCAAACCACAAAACTAATAAATCCCCATTAAAAAAGT
1 TCTTCGATCCCTCATTCAAACAAATCTCCCAAACCACAAAACTAATAAAACCCCATTAAAAAAGT
*
76415667 ACCAAAAAAAAATTACTTCGAACTTAAACACTTAAAAAAAATCAAATTAGAACCATTAAAAGAAC
66 ACCAAAAAAAAATTACTTCGAACTTAAACACTAAAAAAAAATCAAATTAGAACCATTAAAAGAAC
* * * * * * *
76415732 AAACTTTAAAGCAAAATACCTTGAGGGTCTGATTGGAGTAGTAGATGGAGGAGTGTAACTGATGC
131 AAACATTAAAGCAAAATACCTGGAGGGCCTGATTGGAGGACTAGATGAAGGAGTATAACTGATGC
* * * * * *
76415797 ATAGCAAAATAAATTAACAGTCAGGTTAACAATTTAAACCCTAGCAAAAAAATAAATCGTATAGG
196 ATAACAAAATAAACTAACAGTCAGGTTAACAATTTAAACCCTA--AAAAAAATAAACCATAAAAG
**
76415862 TAAATCCTTTTTTCACATTCTTCGATCCCTCATTCAACGCAACCAATCTCCTAAACCCCAAACTA
259 TAAATCCTTTTTTCACATTCTTCGATCCCTCATTCAAAACAACCAATCTCCTAAACCCCAAACTA
** *
76415927 ATAAAACCCATTAAACAAGTACAAAAAAAAAATACTTTTAACTTAAAAACTGAAAAAAAAAATCA
324 ATAAAACCCATTAAACAAGTACAAAAAAAAAATACTTCGAACTTAAAAACCG--AAAAAAAATCA
* * *
76415992 AATTAGAACCATTAAAAGAACAAACATTTAAGCAAAATACCTCGAGGGTCTGATTGGAGGAGTGG
387 AATTAGAACCATTAAAAGAACAAACATTAAAGCAAAATACCTCGAGCGCCTGATTGGAGGAGTGG
76416057 ATGAAGGAGTATAACTGGTGCATAACAAAATAAATTAGCAGTCAGGTTAGCAATTTAAACCCTAA
452 ATGAAGGAGTATAACTGGTGCATAACAAAATAAATTAGCAGTCAGGTTAGCAATTTAAACCCTAA
76416122 TAATTCTTTTATTCATAT
517 TAATTCTTTTATTCATAT
* * * * * *
76416140 TCTTCGATCCCTCATTCAAACCAATCTCCTACACC-CCAAACTAATAAAAGCCCATTAAACAAGT
1 TCTTCGATCCCTCATTCAAACAAATCTCCCAAACCACAAAACTAATAAAACCCCATTAAAAAAGT
*
76416204 A-CAAAAAAAAATTACTTTGAACTTAAAAGTTAAAACACTAAAAAAAAAATCAAATTAGAACCAT
66 ACCAAAAAAAAATTACTTCGAAC-------TT-AAACACT-AAAAAAAAATCAAATTAGAACCAT
*
76416268 TAAAAGAGCAAACATTAAAGCAAAATACCTGGAGGGCCTGATTGGAGGACTAGATGAAGGAGTAT
122 TAAAAGAACAAACATTAAAGCAAAATACCTGGAGGGCCTGATTGGAGGACTAGATGAAGGAGTAT
* * * *
76416333 AACTGGTGCATAACAAAATAAACTAGCAGTCAGGTTAGCAATTTAAACCCT-AATAAAA-AAACC
187 AACTGATGCATAACAAAATAAACTAACAGTCAGGTTAACAATTTAAACCCTAAAAAAAATAAACC
* *
76416396 ATAAAAGTCAATCCTTTTTTTTACACATTCTTCTATCCCTCATTCAAAACAACCAATCTCCTAAA
252 ATAAAAGTAAATCC--TTTTTT-CACATTCTTCGATCCCTCATTCAAAACAACCAATCTCCTAAA
* *
76416461 CCCCAAACTAATAAAAACCCATTAAAGAAGTACAAAAGAAAAACATTACTTCGAACTTAAACACC
314 CCCCAAACTAAT-AAAACCCATTAAACAAGTACAAAA-AAAAA-A-TACTTCGAACTTAAAAACC
* * *
76416526 G-AAAAAAATTAAATTAGAACCGTTAAAAGAACAAGCATTAAAGCAAAATACCTCGAGCGCCTGA
375 GAAAAAAAATCAAATTAGAACCATTAAAAGAACAAACATTAAAGCAAAATACCTCGAGCGCCTGA
76416590 TTGGAGGAGTGGATGAAGGAG
440 TTGGAGGAGTGGATGAAGGAG
76416611 GAGAAGGGCG
Statistics
Matches: 413, Mismatches: 42, Indels: 25
0.86 0.09 0.05
Matches are distributed among these distances:
536 20 0.05
537 26 0.06
538 32 0.08
541 14 0.03
542 6 0.01
543 8 0.02
544 58 0.14
545 227 0.55
546 5 0.01
547 1 0.00
548 16 0.04
ACGTcount: A:0.45, C:0.19, G:0.12, T:0.23
Consensus pattern (534 bp):
TCTTCGATCCCTCATTCAAACAAATCTCCCAAACCACAAAACTAATAAAACCCCATTAAAAAAGT
ACCAAAAAAAAATTACTTCGAACTTAAACACTAAAAAAAAATCAAATTAGAACCATTAAAAGAAC
AAACATTAAAGCAAAATACCTGGAGGGCCTGATTGGAGGACTAGATGAAGGAGTATAACTGATGC
ATAACAAAATAAACTAACAGTCAGGTTAACAATTTAAACCCTAAAAAAAATAAACCATAAAAGTA
AATCCTTTTTTCACATTCTTCGATCCCTCATTCAAAACAACCAATCTCCTAAACCCCAAACTAAT
AAAACCCATTAAACAAGTACAAAAAAAAAATACTTCGAACTTAAAAACCGAAAAAAAATCAAATT
AGAACCATTAAAAGAACAAACATTAAAGCAAAATACCTCGAGCGCCTGATTGGAGGAGTGGATGA
AGGAGTATAACTGGTGCATAACAAAATAAATTAGCAGTCAGGTTAGCAATTTAAACCCTAATAAT
TCTTTTATTCATAT
Found at i:76419823 original size:31 final size:32
Alignment explanation
Indices: 76419786--76419845 Score: 104
Period size: 31 Copynumber: 1.9 Consensus size: 32
76419776 CAAATTTAGC
76419786 AAGTAAAAAATATTTAAA-TAAAATTTTAAAA
1 AAGTAAAAAATATTTAAATTAAAATTTTAAAA
*
76419817 AAGTAAAAAATATTTAAATTATAATTTTA
1 AAGTAAAAAATATTTAAATTAAAATTTTA
76419846 GTGTTCGCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
31 18 0.67
32 9 0.33
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (32 bp):
AAGTAAAAAATATTTAAATTAAAATTTTAAAA
Found at i:76421788 original size:24 final size:23
Alignment explanation
Indices: 76421757--76421809 Score: 81
Period size: 24 Copynumber: 2.3 Consensus size: 23
76421747 TGTTTTGTTA
76421757 AAAT-TGGGTTAAATTTTTTTTG
1 AAATATGGGTTAAATTTTTTTTG
*
76421779 AATATATGGGTTAATTTTTTTTTG
1 AA-ATATGGGTTAAATTTTTTTTG
76421803 AAATATG
1 AAATATG
76421810 AGTGTGTTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 2 0.07
23 7 0.25
24 19 0.68
ACGTcount: A:0.30, C:0.00, G:0.17, T:0.53
Consensus pattern (23 bp):
AAATATGGGTTAAATTTTTTTTG
Found at i:76429498 original size:31 final size:31
Alignment explanation
Indices: 76429462--76429523 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
76429452 TTACAAAACG
76429462 GTCACTAAACTACT-AGAAAGTTTTCATTTAA
1 GTCACTAAACTACTCA-AAAGTTTTCATTTAA
* * *
76429493 GTCACTGAACTATTCAAAAGTTTTTATTTAA
1 GTCACTAAACTACTCAAAAGTTTTCATTTAA
76429524 ATCATTGAGC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 26 0.96
32 1 0.04
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.39
Consensus pattern (31 bp):
GTCACTAAACTACTCAAAAGTTTTCATTTAA
Found at i:76430011 original size:29 final size:30
Alignment explanation
Indices: 76429976--76430039 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 30
76429966 AAGTTGTAAA
76429976 TTTAGTCCATGTA-TTTT-AATTTGATCAAT
1 TTTAGTCCATGTATTTTTGAA-TTGATCAAT
**
76430005 TTTAGTCTTTGTATTTTTTGAATTGATCAAT
1 TTTAGTCCATGTA-TTTTTGAATTGATCAAT
76430036 TTTA
1 TTTA
76430040 ATACTGTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 11 0.37
31 17 0.57
32 2 0.07
ACGTcount: A:0.25, C:0.08, G:0.11, T:0.56
Consensus pattern (30 bp):
TTTAGTCCATGTATTTTTGAATTGATCAAT
Found at i:76430924 original size:15 final size:17
Alignment explanation
Indices: 76430884--76430918 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
76430874 TATTTAATTT
76430884 TTTAAAAT-TAAAAAAA
1 TTTAAAATATAAAAAAA
76430900 TTTAAAATATAAAAAAA
1 TTTAAAATATAAAAAAA
76430917 TT
1 TT
76430919 AAATATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
TTTAAAATATAAAAAAA
Found at i:76430992 original size:15 final size:16
Alignment explanation
Indices: 76430974--76431015 Score: 59
Period size: 15 Copynumber: 2.6 Consensus size: 16
76430964 TATATATATT
76430974 TAAATTATAAAAAT-A
1 TAAATTATAAAAATAA
76430989 TAAATTATTAAAAATAA
1 TAAATTA-TAAAAATAA
76431006 TAAAATTATA
1 T-AAATTATA
76431016 TTTTAACTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.29
16 7 0.29
17 4 0.17
18 6 0.25
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
TAAATTATAAAAATAA
Found at i:76436364 original size:23 final size:23
Alignment explanation
Indices: 76436337--76436380 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
76436327 TCGCCACTTC
76436337 TTTCAGTAGAAATTTCATTTTGA
1 TTTCAGTAGAAATTTCATTTTGA
76436360 TTTCAGTAGAAATTTCATTTT
1 TTTCAGTAGAAATTTCATTTT
76436381 CTTTTTGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.30, C:0.09, G:0.11, T:0.50
Consensus pattern (23 bp):
TTTCAGTAGAAATTTCATTTTGA
Found at i:76453365 original size:22 final size:21
Alignment explanation
Indices: 76453336--76453383 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 21
76453326 TACAATTCGT
76453336 GCACAAAGGCTCGTAACCAAA
1 GCACAAAGGCTCGTAACCAAA
76453357 GTCACAAAGGCTCGTAACCAAA
1 G-CACAAAGGCTCGTAACCAAA
76453379 GCACA
1 GCACA
76453384 TAGAATAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 5 0.19
22 21 0.81
ACGTcount: A:0.42, C:0.29, G:0.19, T:0.10
Consensus pattern (21 bp):
GCACAAAGGCTCGTAACCAAA
Found at i:76456072 original size:17 final size:17
Alignment explanation
Indices: 76456050--76456082 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
76456040 CTTTGAAATT
*
76456050 TCTAACTATGCACATAA
1 TCTAACTATACACATAA
76456067 TCTAACTATACACATA
1 TCTAACTATACACATA
76456083 TTAGATTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.24, G:0.03, T:0.30
Consensus pattern (17 bp):
TCTAACTATACACATAA
Found at i:76458816 original size:138 final size:136
Alignment explanation
Indices: 76458435--76458902 Score: 477
Period size: 138 Copynumber: 3.4 Consensus size: 136
76458425 TTAATATTTG
* *
76458435 TGATTGATTACC-GATTAGG-GTGATTAATGTCTATGTTACAAGACTCCGGTTTGTTTTTCTTTC
1 TGATTGATTACCAG-TT-GGAGTGATTAATGTCTATGTTACTAGACTCGGGTTTGTTTTTCTTTC
* * * *
76458498 AAAAAAGT-C--GTCATAGCCGAACCTCATAGTTTAGGGAATAGGGTGCTACACTTGAAAACCTA
64 AAAAAAGTACATGTCATAGCCGAACCTCATAGTTTTGGGACTA-GGTGTTACACTTGTAAACCTA
*
76458560 CGGAATTGG
128 CGGAATTGA
* * * * * * * *
76458569 TGATTGATTA-CAGTTTGAGTAATCAATATTTGCGATTGATTAC-ACAATTCGGGTTTGCTTTTC
1 TGATTGATTACCAGTTGGAGTGAT-TA-ATGT-CTA-TG-TTACTA-GACTCGGGTTTGTTTTTC
* * *
76458632 TTTCAAAAAAGTTATATGTCATAGCCGAACCTCATAGTTTTCGGACTAGAGTGTTACACTTGTGA
60 TTTCAAAAAAG-TACATGTCATAGCCGAACCTCATAGTTTTGGGACTAG-GTGTTACACTTGTAA
76458697 ACCTACGGAATTGA
123 ACCTACGGAATTGA
* * **
76458711 TGATTGATTACCAGTTGG-GATGATTAATGTCTGTGTTACTTGACTCGGGTTTGTTTTTCTTTTG
1 TGATTGATTACCAGTTGGAG-TGATTAATGTCTATGTTACTAGACTCGGGTTTGTTTTTCTTTCA
* * * *
76458775 AAAAGGATACATGTCATAGCGGAACCTCGTAGTTTTGGGACTAGG-GTTACACTTGTAAAACTAC
65 AAAAAG-TACATGTCATAGCCGAACCTCATAGTTTTGGGACTAGGTGTTACACTTGTAAACCTAC
*
76458839 AGAATTGA
129 GGAATTGA
* * *
76458847 TGATTGATTACCAATTGGAGTGATTAATGTCTATGCTACTCAGACTCGGATTTGTT
1 TGATTGATTACCAGTTGGAGTGATTAATGTCTATGTTACT-AGACTCGGGTTTGTT
76458903 CTCTCTACTG
Statistics
Matches: 273, Mismatches: 43, Indels: 33
0.78 0.12 0.09
Matches are distributed among these distances:
132 1 0.00
133 7 0.03
134 12 0.04
135 3 0.01
136 61 0.22
137 18 0.07
138 89 0.33
139 3 0.01
140 1 0.00
141 4 0.01
142 65 0.24
143 9 0.03
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (136 bp):
TGATTGATTACCAGTTGGAGTGATTAATGTCTATGTTACTAGACTCGGGTTTGTTTTTCTTTCAA
AAAAGTACATGTCATAGCCGAACCTCATAGTTTTGGGACTAGGTGTTACACTTGTAAACCTACGG
AATTGA
Found at i:76470915 original size:40 final size:43
Alignment explanation
Indices: 76470871--76470962 Score: 100
Period size: 47 Copynumber: 2.1 Consensus size: 43
76470861 AAAGGTTGAC
76470871 TTCAA-TTAATCAA-AA-AAGCTTTAAAGATTATCATTCTAGT
1 TTCAAGTTAATCAATAAGAAGCTTTAAAGATTATCATTCTAGT
* * *
76470911 TTCAACTAAGTTGATGAATAAGAAGTTTTAAAGATTATCATTCTAGT
1 TT---C-AAGTTAATCAATAAGAAGCTTTAAAGATTATCATTCTAGT
76470958 TTCAA
1 TTCAA
76470963 CTAAGTTGAT
Statistics
Matches: 42, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
40 2 0.05
43 3 0.07
44 3 0.07
45 6 0.14
46 2 0.05
47 26 0.62
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.38
Consensus pattern (43 bp):
TTCAAGTTAATCAATAAGAAGCTTTAAAGATTATCATTCTAGT
Found at i:76470944 original size:47 final size:47
Alignment explanation
Indices: 76470890--76470984 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
76470880 TCAAAAAAGC
76470890 TTTAAAGATTATCATTCTAGTTTCAACTAAGTTGATGAATAAGAAGT
1 TTTAAAGATTATCATTCTAGTTTCAACTAAGTTGATGAATAAGAAGT
76470937 TTTAAAGATTATCATTCTAGTTTCAACTAAGTTGATGAATAAGAAGT
1 TTTAAAGATTATCATTCTAGTTTCAACTAAGTTGATGAATAAGAAGT
76470984 T
1 T
76470985 AACTTTTAGG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.39
Consensus pattern (47 bp):
TTTAAAGATTATCATTCTAGTTTCAACTAAGTTGATGAATAAGAAGT
Found at i:76474042 original size:33 final size:33
Alignment explanation
Indices: 76474000--76474123 Score: 221
Period size: 33 Copynumber: 3.8 Consensus size: 33
76473990 TTTCTTCTTG
* *
76474000 ACATTCCAGCTACTGTCCAGAAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
76474033 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
*
76474066 ACATTCCAGCTCCCGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
76474099 ACATTCCAGCTCCTGTCCAGCAACC
1 ACATTCCAGCTCCTGTCCAGCAACC
76474124 TGAAACAGAG
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 87 1.00
ACGTcount: A:0.31, C:0.42, G:0.10, T:0.18
Consensus pattern (33 bp):
ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
Found at i:76476924 original size:25 final size:25
Alignment explanation
Indices: 76476890--76476939 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
76476880 GGAGCAAAAA
76476890 ATACATGATCTCGTCAAGAGACAAG
1 ATACATGATCTCGTCAAGAGACAAG
76476915 ATACATGATCTCGTCAAGAGACAAG
1 ATACATGATCTCGTCAAGAGACAAG
76476940 TTCTCTAACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (25 bp):
ATACATGATCTCGTCAAGAGACAAG
Found at i:76485490 original size:23 final size:25
Alignment explanation
Indices: 76485446--76485493 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
76485436 TTAAAATTTT
* *
76485446 TAATATAATTATAATTTCAAAAAAA
1 TAATATAAATATAAATTCAAAAAAA
76485471 TAATATAAATA-AAATT-AAAAAAA
1 TAATATAAATATAAATTCAAAAAAA
76485494 CCATCATATG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 7 0.33
24 4 0.19
25 10 0.48
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (25 bp):
TAATATAAATATAAATTCAAAAAAA
Found at i:76497467 original size:47 final size:47
Alignment explanation
Indices: 76497358--76497468 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
76497348 CCGGGATAAG
*
76497358 CACATAGTGCTTCATCGGAATAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAATAAATCCGGAACTTTAACAGTATAGTA
* * *
76497405 CACAAAGTACTTCATCGGAATAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAATAAATCCGGAACTTTAACAGTA-TAGTA
76497452 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
76497469 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAATAAATCCGGAACTTTAACAGTATAGTA
Found at i:76498241 original size:4 final size:4
Alignment explanation
Indices: 76498232--76498260 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
76498222 CCCTTTTCTA
76498232 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
76498261 CACCTTTGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:76502497 original size:31 final size:32
Alignment explanation
Indices: 76502462--76502527 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
76502452 CAAAATAATC
76502462 ATTGAACTATTC-AAAAATTTT-TATTTAAATA
1 ATTGAACTATTCAAAAAATTTTCT-TTTAAATA
* *
76502493 ATTGAATTATTCAAAAAATTTTCTTTTAAGTA
1 ATTGAACTATTCAAAAAATTTTCTTTTAAATA
76502525 ATT
1 ATT
76502528 TGATTGTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
31 11 0.35
32 19 0.61
33 1 0.03
ACGTcount: A:0.42, C:0.06, G:0.05, T:0.47
Consensus pattern (32 bp):
ATTGAACTATTCAAAAAATTTTCTTTTAAATA
Found at i:76505725 original size:35 final size:35
Alignment explanation
Indices: 76505675--76505770 Score: 111
Period size: 35 Copynumber: 2.7 Consensus size: 35
76505665 CATAGGTAAG
* * *
76505675 TACATGTAAGCTTATATTGAACTTGTATAATCGGT
1 TACATGTGAGCTTATATTGAATTTGTATAATCGAT
* * * *
76505710 TGCATGTGAGGTTATATTGAATTTGAATATTCGAT
1 TACATGTGAGCTTATATTGAATTTGTATAATCGAT
* *
76505745 TACAAGTGAGTTTATATTGAATTTGT
1 TACATGTGAGCTTATATTGAATTTGT
76505771 GTATTTGGTC
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 50 1.00
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (35 bp):
TACATGTGAGCTTATATTGAATTTGTATAATCGAT
Found at i:76506101 original size:25 final size:25
Alignment explanation
Indices: 76506073--76506144 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
76506063 TAATTCGGTT
76506073 AGTTGAATGTTTTGATTATTCATTG
1 AGTTGAATGTTTTGATTATTCATTG
76506098 AGTTG--T-TTATTG--TA--C-TT-
1 AGTTGAATGTT-TTGATTATTCATTG
76506115 AGTTGAATGTTTTGATTATTCATTG
1 AGTTGAATGTTTTGATTATTCATTG
76506140 AGTTG
1 AGTTG
76506145 TTTATTGTGC
Statistics
Matches: 37, Mismatches: 0, Indels: 20
0.65 0.00 0.35
Matches are distributed among these distances:
17 5 0.14
18 2 0.05
19 5 0.14
20 2 0.05
21 4 0.11
22 2 0.05
23 5 0.14
24 2 0.05
25 10 0.27
ACGTcount: A:0.22, C:0.04, G:0.21, T:0.53
Consensus pattern (25 bp):
AGTTGAATGTTTTGATTATTCATTG
Found at i:76506104 original size:21 final size:21
Alignment explanation
Indices: 76506080--76506147 Score: 63
Period size: 21 Copynumber: 3.2 Consensus size: 21
76506070 GTTAGTTGAA
76506080 TGTTTTGATTATTCATTGAGT
1 TGTTTTGATTATTCATTGAGT
*
76506101 TG-TTT-ATTGTACTT-AGTTGA-A
1 TGTTTTGA-T-TA-TTCA-TTGAGT
76506122 TGTTTTGATTATTCATTGAGT
1 TGTTTTGATTATTCATTGAGT
76506143 TGTTT
1 TGTTT
76506148 ATTGTGCTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 16
0.67 0.04 0.29
Matches are distributed among these distances:
19 1 0.03
20 10 0.27
21 15 0.41
22 10 0.27
23 1 0.03
ACGTcount: A:0.19, C:0.04, G:0.19, T:0.57
Consensus pattern (21 bp):
TGTTTTGATTATTCATTGAGT
Found at i:76506118 original size:42 final size:42
Alignment explanation
Indices: 76506071--76506157 Score: 165
Period size: 42 Copynumber: 2.1 Consensus size: 42
76506061 TATAATTCGG
76506071 TTAGTTGAATGTTTTGATTATTCATTGAGTTGTTTATTGTAC
1 TTAGTTGAATGTTTTGATTATTCATTGAGTTGTTTATTGTAC
*
76506113 TTAGTTGAATGTTTTGATTATTCATTGAGTTGTTTATTGTGC
1 TTAGTTGAATGTTTTGATTATTCATTGAGTTGTTTATTGTAC
76506155 TTA
1 TTA
76506158 AAGCTTACTA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.21, C:0.05, G:0.20, T:0.55
Consensus pattern (42 bp):
TTAGTTGAATGTTTTGATTATTCATTGAGTTGTTTATTGTAC
Found at i:76512701 original size:29 final size:28
Alignment explanation
Indices: 76512669--76512734 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 28
76512659 ACAATTGAAC
*
76512669 TTAAATTTTAAAATAAAAAAACTAAATT
1 TTAAATTTAAAAATAAAAAAACTAAATT
** * *
76512697 ATTAAAAATAAAAATACATAAACTAAATT
1 -TTAAATTTAAAAATAAAAAAACTAAATT
76512726 TTAAATTTA
1 TTAAATTTA
76512735 TGAAAAATAG
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
28 7 0.23
29 23 0.77
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.35
Consensus pattern (28 bp):
TTAAATTTAAAAATAAAAAAACTAAATT
Found at i:76516328 original size:17 final size:18
Alignment explanation
Indices: 76516306--76516342 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
76516296 GTAAAAAAAT
76516306 ATAATTT-TAT-TGTTTTA
1 ATAATTTATATAT-TTTTA
76516323 ATAATTTATATATTTTTA
1 ATAATTTATATATTTTTA
76516341 AT
1 AT
76516343 TTTTTTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.39
18 10 0.56
19 1 0.06
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (18 bp):
ATAATTTATATATTTTTA
Found at i:76516339 original size:26 final size:26
Alignment explanation
Indices: 76516304--76516354 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
76516294 TAGTAAAAAA
76516304 ATATAATTTT-ATTGTTTTAATAATTT
1 ATATAATTTTAATTGTTTTAA-AATTT
* *
76516330 ATATATTTTTAATTTTTTTAAAATT
1 ATATAATTTTAATTGTTTTAAAATT
76516355 AAATTAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 13 0.59
27 9 0.41
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (26 bp):
ATATAATTTTAATTGTTTTAAAATTT
Found at i:76520338 original size:3 final size:3
Alignment explanation
Indices: 76520330--76520363 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
76520320 TGTTAAACGT
76520330 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
76520364 TTATCCAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:76528688 original size:16 final size:16
Alignment explanation
Indices: 76528667--76528697 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76528657 ATTTGGATAG
76528667 TTATTTTAGATTTAAA
1 TTATTTTAGATTTAAA
*
76528683 TTATTTTAGGTTTAA
1 TTATTTTAGATTTAA
76528698 GTGATTAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.10, T:0.58
Consensus pattern (16 bp):
TTATTTTAGATTTAAA
Found at i:76533435 original size:24 final size:24
Alignment explanation
Indices: 76533399--76533449 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 24
76533389 TCTTTTAAAT
76533399 TTTTAGGAATTTTAAGAATATA-TA
1 TTTTAGGAATTTTAAGAAT-TAGTA
*
76533423 TTTTA-GAATTTTTAGGAATTAGTA
1 TTTTAGGAA-TTTTAAGAATTAGTA
76533447 TTT
1 TTT
76533450 CTAAAAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 5 0.21
24 19 0.79
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (24 bp):
TTTTAGGAATTTTAAGAATTAGTA
Found at i:76550759 original size:26 final size:29
Alignment explanation
Indices: 76550704--76550761 Score: 77
Period size: 27 Copynumber: 2.1 Consensus size: 29
76550694 CAAAAAATGC
*
76550704 AATGACTAAAATTGACTAAATTAAAGTAT
1 AATGACTAAAATTGAATAAATTAAAGTAT
*
76550733 AATGACT-AAATT-AATAATTTAAA-TAT
1 AATGACTAAAATTGAATAAATTAAAGTAT
76550759 AAT
1 AAT
76550762 TCAATGACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 6 0.22
27 9 0.33
28 5 0.19
29 7 0.26
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.34
Consensus pattern (29 bp):
AATGACTAAAATTGAATAAATTAAAGTAT
Found at i:76551397 original size:25 final size:22
Alignment explanation
Indices: 76551353--76551411 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 22
76551343 GAACCAAAAT
*
76551353 TTAATTATAATTTTTTTATAGA
1 TTAATTATAATTTTCTTATAGA
76551375 TTAATATATAAGTTTATCTTAT--A
1 TTAAT-TATAA-TTT-TCTTATAGA
76551398 TTAATTTATAATTT
1 TTAA-TTATAATTT
76551412 CATTTTTAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
22 8 0.25
23 15 0.47
24 4 0.12
25 5 0.16
ACGTcount: A:0.37, C:0.02, G:0.03, T:0.58
Consensus pattern (22 bp):
TTAATTATAATTTTCTTATAGA
Found at i:76552440 original size:15 final size:15
Alignment explanation
Indices: 76552406--76552443 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
76552396 ATTTAGTTTC
* *
76552406 TATATTTTAATTTAA
1 TATATTTTTATGTAA
76552421 T-TATTTTTATGTAA
1 TATATTTTTATGTAA
76552435 TATATTTTT
1 TATATTTTT
76552444 TCAATTTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.66
Consensus pattern (15 bp):
TATATTTTTATGTAA
Found at i:76553108 original size:107 final size:107
Alignment explanation
Indices: 76552917--76553119 Score: 280
Period size: 107 Copynumber: 1.9 Consensus size: 107
76552907 TTTTAAATTA
* * ** * * **
76552917 ATCCGATATCTTTATATGAAACAAATTTGGCGTGCAAACTCTATATGAGTAGCATACAAAATATG
1 ATCCAATATCTCTATATGAAACAAATTTAACGTACAAACTCTATATGAATAAAATACAAAATATG
76552982 ACGGTTAAATCATTAAAATATTAATGGTAAATTTTCGAATCG
66 ACGGTTAAATCATTAAAATATTAATGGTAAATTTTCGAATCG
* ** *
76553024 ATCCAATATCTCTATATGAAACAAATTTAACGTACATACTCTATATGAATAAAATATGAAATTTG
1 ATCCAATATCTCTATATGAAACAAATTTAACGTACAAACTCTATATGAATAAAATACAAAATATG
* *
76553089 ATGGTTAAATTATTAAAATATTAATGGTAAA
66 ACGGTTAAATCATTAAAATATTAATGGTAAA
76553120 AAAATAAAAA
Statistics
Matches: 82, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
107 82 1.00
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.34
Consensus pattern (107 bp):
ATCCAATATCTCTATATGAAACAAATTTAACGTACAAACTCTATATGAATAAAATACAAAATATG
ACGGTTAAATCATTAAAATATTAATGGTAAATTTTCGAATCG
Found at i:76554008 original size:24 final size:24
Alignment explanation
Indices: 76553981--76554027 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
76553971 CACCAGCACT
* *
76553981 AGCTCTTCCACCTGCACCTCCTCC
1 AGCTCCTCCACCTACACCTCCTCC
*
76554005 AGCTCCTCCACCTACGCCTCCTC
1 AGCTCCTCCACCTACACCTCCTC
76554028 TAGCACCACC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.13, C:0.55, G:0.09, T:0.23
Consensus pattern (24 bp):
AGCTCCTCCACCTACACCTCCTCC
Found at i:76554039 original size:24 final size:24
Alignment explanation
Indices: 76553988--76554065 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
76553978 ACTAGCTCTT
* * *
76553988 CCACCTGCACCTCCTCCAGCTCCT
1 CCACCTACACCTCCTCCAGCACCA
* *
76554012 CCACCTACGCCTCCTCTAGCACCA
1 CCACCTACACCTCCTCCAGCACCA
*
76554036 CCACC-AC-CACTACCACCAGCACCA
1 CCACCTACAC-CT-CCTCCAGCACCA
*
76554060 GCACCT
1 CCACCT
76554066 CTACTAGCTC
Statistics
Matches: 43, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
22 1 0.02
23 4 0.09
24 38 0.88
ACGTcount: A:0.22, C:0.56, G:0.08, T:0.14
Consensus pattern (24 bp):
CCACCTACACCTCCTCCAGCACCA
Found at i:76554106 original size:18 final size:18
Alignment explanation
Indices: 76554037--76554107 Score: 61
Period size: 18 Copynumber: 3.9 Consensus size: 18
76554027 CTAGCACCAC
* *
76554037 CACCACCACTACCACCAG
1 CACCACCACCACCACTAG
* * *
76554055 CACCAGCACCTCTACTAG
1 CACCACCACCACCACTAG
* * * *
76554073 CTCCACCTCGAGCACTAG
1 CACCACCACCACCACTAG
76554091 CACCACCACCACCACTA
1 CACCACCACCACCACTA
76554108 ATCCCTCCTC
Statistics
Matches: 37, Mismatches: 16, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.30, C:0.51, G:0.08, T:0.11
Consensus pattern (18 bp):
CACCACCACCACCACTAG
Found at i:76554706 original size:31 final size:30
Alignment explanation
Indices: 76554663--76554727 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 30
76554653 CTGCTTACAT
*
76554663 TTTTATAGTTTTTAAAAGGATTAAATTA-AAA
1 TTTTATAGTTTTTAAAA--ATTAAACTATAAA
*
76554694 TTTTAGTATTTTTTAAAAATTAAACTATAAA
1 TTTTA-TAGTTTTTAAAAATTAAACTATAAA
76554725 TTT
1 TTT
76554728 AACTTAAGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 8 0.27
31 11 0.37
32 11 0.37
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (30 bp):
TTTTATAGTTTTTAAAAATTAAACTATAAA
Found at i:76555342 original size:18 final size:18
Alignment explanation
Indices: 76555308--76555341 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
76555298 ATCGCTTACT
*
76555308 CTTTTTTTTTCAGTTTTA
1 CTTTATTTTTCAGTTTTA
76555326 CTTTATTTTT-AGTTTT
1 CTTTATTTTTCAGTTTT
76555342 TCAAAATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.12, C:0.09, G:0.06, T:0.74
Consensus pattern (18 bp):
CTTTATTTTTCAGTTTTA
Found at i:76556471 original size:42 final size:43
Alignment explanation
Indices: 76556415--76556515 Score: 118
Period size: 42 Copynumber: 2.4 Consensus size: 43
76556405 TCCTCCTCCT
* *
76556415 CCACC-AGCTCCTCCTCCAACTCCACCACCTGCACCACCCCCA
1 CCACCAAGCTCCTCCTCCAACACCACCACCTGCACCACCACCA
* * * *
76556457 CCACCAAGC-CCTCCTCCAAGACCGCCACCTGCTCCAGCACCA
1 CCACCAAGCTCCTCCTCCAACACCACCACCTGCACCACCACCA
*
76556499 CCACC-AGCTCCACCTCC
1 CCACCAAGCTCCTCCTCC
76556516 TAAACCGGCA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
41 3 0.06
42 44 0.88
43 3 0.06
ACGTcount: A:0.22, C:0.59, G:0.08, T:0.11
Consensus pattern (43 bp):
CCACCAAGCTCCTCCTCCAACACCACCACCTGCACCACCACCA
Found at i:76556550 original size:24 final size:24
Alignment explanation
Indices: 76556523--76556756 Score: 133
Period size: 24 Copynumber: 9.5 Consensus size: 24
76556513 TCCTAAACCG
*
76556523 GCACCGCCACCAAGCCCTCCTCCA
1 GCACCACCACCAAGCCCTCCTCCA
* *
76556547 GCACCCCCACCTCCACCGGCTCCTCCTCCTA
1 GCA---CCACCACCA--AGC-CCTCCTCC-A
*
76556578 -AACCACCACCAAGCCCTCCTCCA
1 GCACCACCACCAAGCCCTCCTCCA
* *
76556601 GCAGCACCACC-A--CCTCCTAAACCG
1 GCACCACCACCAAGCCCTCCT---CCA
* *
76556625 GCACCCCCGCCAAGCCCTCCTCCA
1 GCACCACCACCAAGCCCTCCTCCA
*
76556649 GCACCACCACCTAATCCAC-CC-CCA
1 GCACCACCACC-AAGCC-CTCCTCCA
* * * *
76556673 CCGCCGCCACCAAGCCCTCCTCCT
1 GCACCACCACCAAGCCCTCCTCCA
* *
76556697 GCACCCCCACC-AGCTCCACCTCCTA
1 GCACCACCACCAAGC-CCTCCTCC-A
*
76556722 -AACCACCACCAAGCCCTCCTCCA
1 GCACCACCACCAAGCCCTCCTCCA
*
76556745 GCACCAGCACCA
1 GCACCACCACCA
76556757 CCACCAAAAC
Statistics
Matches: 157, Mismatches: 31, Indels: 44
0.68 0.13 0.19
Matches are distributed among these distances:
21 6 0.04
22 1 0.01
23 12 0.08
24 92 0.59
25 12 0.08
26 1 0.01
27 21 0.13
29 2 0.01
30 9 0.06
31 1 0.01
ACGTcount: A:0.23, C:0.58, G:0.09, T:0.10
Consensus pattern (24 bp):
GCACCACCACCAAGCCCTCCTCCA
Found at i:76556551 original size:102 final size:103
Alignment explanation
Indices: 76556445--76556656 Score: 245
Period size: 102 Copynumber: 2.1 Consensus size: 103
76556435 TCCACCACCT
* * * *
76556445 GCACCACCC-CCACCACCAAGC-CCTCCTCC-AAGACCGCCACC-TGCTCCAGCACCACCACCAG
1 GCACCACCCACCACCACC-AGCTCCTCCTCCTAA-ACCACCACCAAGC-CCACCACCACCACCAC
* *
76556506 CTCCACCTCCTAAACCGGCACCGCCACCAAGCCCTCCTCCA
63 CACCACCTCCTAAACCGGCACCCCCACCAAGCCCTCCTCCA
* * * * * *
76556547 GCACC-CCCACCTCCACCGGCTCCTCCTCCTAAACCACCACCAAGCCCTCCTCCAGCAGCACCAC
1 GCACCACCCACCACCACCAGCTCCTCCTCCTAAACCACCACCAAGCCCACCACCACCACCACCAC
*
76556611 CACCTCCTAAACCGGCACCCCCGCCAAGCCCTCCTCCA
66 CACCTCCTAAACCGGCACCCCCACCAAGCCCTCCTCCA
76556649 GCACCACC
1 GCACCACC
76556657 ACCTAATCCA
Statistics
Matches: 92, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
101 5 0.05
102 81 0.88
103 6 0.07
ACGTcount: A:0.23, C:0.58, G:0.10, T:0.09
Consensus pattern (103 bp):
GCACCACCCACCACCACCAGCTCCTCCTCCTAAACCACCACCAAGCCCACCACCACCACCACCAC
CACCTCCTAAACCGGCACCCCCACCAAGCCCTCCTCCA
Found at i:76556587 original size:30 final size:30
Alignment explanation
Indices: 76556494--76556588 Score: 86
Period size: 30 Copynumber: 3.2 Consensus size: 30
76556484 CCTGCTCCAG
* **
76556494 CACCACCACCAGCTCCACCTCCTAAACCGG
1 CACCACCACCAGCTCCTCCTCCTAAACCAC
* * *
76556524 CACCGCCACCAAGC-CCTCCTCC-AGCACCCC
1 CACCACCACC-AGCTCCTCCTCCTA-AACCAC
* *
76556554 CACCTCCACCGGCTCCTCCTCCTAAACCAC
1 CACCACCACCAGCTCCTCCTCCTAAACCAC
76556584 CACCA
1 CACCA
76556589 AGCCCTCCTC
Statistics
Matches: 51, Mismatches: 10, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
29 3 0.06
30 44 0.86
31 4 0.08
ACGTcount: A:0.23, C:0.58, G:0.08, T:0.11
Consensus pattern (30 bp):
CACCACCACCAGCTCCTCCTCCTAAACCAC
Found at i:76556716 original size:102 final size:104
Alignment explanation
Indices: 76556488--76556755 Score: 278
Period size: 102 Copynumber: 2.7 Consensus size: 104
76556478 CCGCCACCTG
*
76556488 CTCCAGCACCACCACCAGCTCCACCTCCTAAACCGGCACCGCCACCAAGCCCTCCTCCAGCACCC
1 CTCCAGCACC-CCACCAGCTCCACCTCCTAAACCGGCACC-CCACCAAGCCCTCCTCCAGCACCA
* * *
76556553 CCACCTCCACCGGCTCCTCCTCCTAAACCACCACCAAGCCCTC
64 CCACCTCAACCGACTCCTCCACC--AACCACCACCAAGCCCTC
* *
76556596 CTCCAGCA--GCACCA---CCACCTCCTAAACCGGCACCCCCGCCAAGCCCTCCTCCAGCACCAC
1 CTCCAGCACCCCACCAGCTCCACCTCCTAAACCGGCA-CCCCACCAAGCCCTCCTCCAGCACCAC
* *
76556656 CACCT-AATCC-AC-CC-CCACC-GCCGCCACCAAGCCCTC
65 CACCTCAA-CCGACTCCTCCACCAACCACCACCAAGCCCTC
* *
76556692 CTCCTGCACCCCCACCAGCTCCACCTCCTAAA-C--CA--CCACCAAGCCCTCCTCCAGCACCAG
1 CTCCAGCA-CCCCACCAGCTCCACCTCCTAAACCGGCACCCCACCAAGCCCTCCTCCAGCACCAC
76556752 CACC
65 CACC
76556756 ACCACCAAAA
Statistics
Matches: 140, Mismatches: 12, Indels: 28
0.78 0.07 0.16
Matches are distributed among these distances:
96 49 0.35
99 11 0.08
100 2 0.01
101 3 0.02
102 60 0.43
103 2 0.01
105 5 0.04
108 8 0.06
ACGTcount: A:0.23, C:0.58, G:0.09, T:0.10
Consensus pattern (104 bp):
CTCCAGCACCCCACCAGCTCCACCTCCTAAACCGGCACCCCACCAAGCCCTCCTCCAGCACCACC
ACCTCAACCGACTCCTCCACCAACCACCACCAAGCCCTC
Found at i:76560088 original size:31 final size:30
Alignment explanation
Indices: 76560053--76560113 Score: 70
Period size: 31 Copynumber: 2.0 Consensus size: 30
76560043 ATAATAAAAA
* *
76560053 TATAA-AAAATTTATATTAATATTAATATTTT
1 TATAATAAAATTTA-AATAATAATAAT-TTTT
*
76560084 TATAATTAAATTTAAATAATAATAATTTTT
1 TATAATAAAATTTAAATAATAATAATTTTT
76560114 CATTATTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
30 4 0.15
31 15 0.58
32 7 0.27
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (30 bp):
TATAATAAAATTTAAATAATAATAATTTTT
Found at i:76568259 original size:23 final size:22
Alignment explanation
Indices: 76568192--76568259 Score: 57
Period size: 24 Copynumber: 3.0 Consensus size: 22
76568182 AATTAAAATA
* *
76568192 TTAATATTTTTAAAAAAATTAAAT
1 TTAA-ATTTTT-ATAAAATTTAAT
* *
76568216 TTAAA-TTTTATCATATATTAAT
1 TTAAATTTTTATAAAAT-TTAAT
76568238 TTATAATTTTTATAAAATTTAA
1 TTA-AATTTTTATAAAATTTAA
76568260 AATGAAATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
21 4 0.11
22 11 0.31
23 7 0.20
24 13 0.37
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51
Consensus pattern (22 bp):
TTAAATTTTTATAAAATTTAAT
Found at i:76569136 original size:18 final size:19
Alignment explanation
Indices: 76569100--76569139 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
76569090 GAGGCTCAAT
*
76569100 ATAAAAAAATTATATTTTA
1 ATAAAAAAATTATAATTTA
*
76569119 ATAAAAAATTTA-AATTTA
1 ATAAAAAAATTATAATTTA
76569137 ATA
1 ATA
76569140 TCAACTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (19 bp):
ATAAAAAAATTATAATTTA
Found at i:76571795 original size:30 final size:30
Alignment explanation
Indices: 76571761--76571820 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
76571751 ACTTAACAAG
*
76571761 CAAATGCTTTTAAAATAATAAAAAAATTAA
1 CAAATGCCTTTAAAATAATAAAAAAATTAA
*
76571791 CAAATGCCTTTAAAATAATAAGAAAATTAA
1 CAAATGCCTTTAAAATAATAAAAAAATTAA
76571821 TAATAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.58, C:0.08, G:0.05, T:0.28
Consensus pattern (30 bp):
CAAATGCCTTTAAAATAATAAAAAAATTAA
Found at i:76579893 original size:16 final size:18
Alignment explanation
Indices: 76579861--76579893 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
76579851 ATTAATAAAA
76579861 TAAATTTAGTGTTAATTG
1 TAAATTTAGTGTTAATTG
76579879 TAAATTT-GT-TTAATT
1 TAAATTTAGTGTTAATT
76579894 TTACGTCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 2 0.13
18 7 0.47
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (18 bp):
TAAATTTAGTGTTAATTG
Found at i:76590030 original size:73 final size:73
Alignment explanation
Indices: 76589916--76590051 Score: 202
Period size: 73 Copynumber: 1.9 Consensus size: 73
76589906 TATATATTCG
* * * *
76589916 ATATTCGATTTTGAGTGTCTTCTTCCATGAATTTTAAGGATCTTTGGAGGGCCGTATCTCAATGA
1 ATATCCGATTTCGAGTATCTTCTTCCATGAATTTTAAGGATCTTTGGAGGGCCATATCTCAATGA
76589981 GGGTATAT
66 GGGTATAT
* *
76589989 ATATCCGATTTCGAGTATGTTCTTCC-TAGAATTTTAAGGATCTTTGGAGGGTCATATCTCAAT
1 ATATCCGATTTCGAGTATCTTCTTCCAT-GAATTTTAAGGATCTTTGGAGGGCCATATCTCAAT
76590052 ATACGAACAC
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
72 1 0.02
73 55 0.98
ACGTcount: A:0.24, C:0.15, G:0.21, T:0.40
Consensus pattern (73 bp):
ATATCCGATTTCGAGTATCTTCTTCCATGAATTTTAAGGATCTTTGGAGGGCCATATCTCAATGA
GGGTATAT
Found at i:76611719 original size:6 final size:6
Alignment explanation
Indices: 76611708--76611733 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
76611698 ATATATAATT
76611708 ATTAAA ATTAAA ATTAAA ATTAAA AT
1 ATTAAA ATTAAA ATTAAA ATTAAA AT
76611734 AATTTAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (6 bp):
ATTAAA
Found at i:76622119 original size:13 final size:13
Alignment explanation
Indices: 76622101--76622126 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
76622091 CAAATTGAAC
76622101 AAAGTTTTGCTTG
1 AAAGTTTTGCTTG
76622114 AAAGTTTTGCTTG
1 AAAGTTTTGCTTG
76622127 TTGATAGAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (13 bp):
AAAGTTTTGCTTG
Found at i:76622864 original size:7 final size:7
Alignment explanation
Indices: 76622854--76622880 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
76622844 AGAAGAAAAT
76622854 AATATAA
1 AATATAA
76622861 AATATAA
1 AATATAA
76622868 AATATAA
1 AATATAA
76622875 AATATA
1 AATATA
76622881 TATATAATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (7 bp):
AATATAA
Found at i:76632433 original size:5 final size:6
Alignment explanation
Indices: 76632420--76632465 Score: 56
Period size: 6 Copynumber: 7.3 Consensus size: 6
76632410 ATAATTTAAT
* *
76632420 AAATAA AAATAA AAATCTAA AACTAA AACTAA AAATAA AAATAA AA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATAA AA
76632466 CATATAATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
6 31 0.86
8 5 0.14
ACGTcount: A:0.76, C:0.07, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:76632529 original size:9 final size:9
Alignment explanation
Indices: 76632484--76632542 Score: 64
Period size: 9 Copynumber: 6.6 Consensus size: 9
76632474 TTTATACAAA
*
76632484 TAATTCGGT
1 TAATTCGAT
* *
76632493 TAATTTGAG
1 TAATTCGAT
**
76632502 TAATTCGGG
1 TAATTCGAT
*
76632511 TAATTTGAT
1 TAATTCGAT
76632520 TAATTCGAT
1 TAATTCGAT
76632529 TAATTCGAT
1 TAATTCGAT
76632538 TAATT
1 TAATT
76632543 AAGTTTATTT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.31, C:0.07, G:0.17, T:0.46
Consensus pattern (9 bp):
TAATTCGAT
Found at i:76632538 original size:18 final size:18
Alignment explanation
Indices: 76632484--76632542 Score: 82
Period size: 18 Copynumber: 3.3 Consensus size: 18
76632474 TTTATACAAA
*
76632484 TAATTCGGTTAATTTGAG
1 TAATTCGGTTAATTTGAT
*
76632502 TAATTCGGGTAATTTGAT
1 TAATTCGGTTAATTTGAT
* *
76632520 TAATTCGATTAATTCGAT
1 TAATTCGGTTAATTTGAT
76632538 TAATT
1 TAATT
76632543 AAGTTTATTT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.31, C:0.07, G:0.17, T:0.46
Consensus pattern (18 bp):
TAATTCGGTTAATTTGAT
Found at i:76633418 original size:131 final size:132
Alignment explanation
Indices: 76633244--76633507 Score: 521
Period size: 131 Copynumber: 2.0 Consensus size: 132
76633234 AATAAGTTCG
76633244 ATAACATATAAAAAAATGGATAAATGAATGCAGGTTAGCAAACAAGACCTGGCGGATACATATAA
1 ATAACATATAAAAAAATGGATAAATGAATGCAGGTTAGCAAACAAGACCTGGCGGATACATATAA
76633309 TGTACCATTCAAAGCATGTGTAGTGGAAGGGAAAGTTGCAAGTGTTATGTGTTCTTACAATCAAG
66 TGTACCATTCAAAGCATGTGTAGTGGAAGGGAAAGTTGCAAGTGTTATGTGTTCTTACAATCAAG
76633374 TC
131 TC
76633376 ATAACATAT-AAAAAATGGATAAATGAATGCAGGTTAGCAAACAAGACCTGGCGGATACATATAA
1 ATAACATATAAAAAAATGGATAAATGAATGCAGGTTAGCAAACAAGACCTGGCGGATACATATAA
76633440 TGTACCATTCAAAGCATGTGTAGTGGAAGGGAAAGTTGCAAGTGTTATGTGTTCTTACAATCAAG
66 TGTACCATTCAAAGCATGTGTAGTGGAAGGGAAAGTTGCAAGTGTTATGTGTTCTTACAATCAAG
76633505 TC
131 TC
76633507 A
1 A
76633508 ATGGCAAGCC
Statistics
Matches: 132, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
131 123 0.93
132 9 0.07
ACGTcount: A:0.39, C:0.13, G:0.22, T:0.26
Consensus pattern (132 bp):
ATAACATATAAAAAAATGGATAAATGAATGCAGGTTAGCAAACAAGACCTGGCGGATACATATAA
TGTACCATTCAAAGCATGTGTAGTGGAAGGGAAAGTTGCAAGTGTTATGTGTTCTTACAATCAAG
TC
Found at i:76633596 original size:4 final size:4
Alignment explanation
Indices: 76633589--76633630 Score: 75
Period size: 4 Copynumber: 10.2 Consensus size: 4
76633579 GTTCCATCAT
76633589 CATA CATA CATGA CATA CATA CATA CATA CATA CATA CATA C
1 CATA CATA CAT-A CATA CATA CATA CATA CATA CATA CATA C
76633631 TATGTTTTTG
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
4 33 0.89
5 4 0.11
ACGTcount: A:0.48, C:0.26, G:0.02, T:0.24
Consensus pattern (4 bp):
CATA
Found at i:76637272 original size:12 final size:13
Alignment explanation
Indices: 76637240--76637277 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
76637230 GAGTAGCATT
*
76637240 TTATTGTTATGCAG
1 TTATTGTTAT-TAG
76637254 TTATTGTTATTAG
1 TTATTGTTATTAG
76637267 -TATTGTTATTA
1 TTATTGTTATTA
76637278 TTGAGTTATG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 11 0.48
13 2 0.09
14 10 0.43
ACGTcount: A:0.24, C:0.03, G:0.16, T:0.58
Consensus pattern (13 bp):
TTATTGTTATTAG
Found at i:76637559 original size:47 final size:48
Alignment explanation
Indices: 76637440--76637599 Score: 134
Period size: 47 Copynumber: 3.4 Consensus size: 48
76637430 AATTGACGGT
* * * * *
76637440 TAAGAATACCATGTAAGACCATATCAAGACATGGCATTGG---TAAGG
1 TAAGGATACCATGTAAGACCACATCAAGACATGGCATCGGCACTATGA
* * * * **
76637485 CAAGGATCCCGTCTAAGACCATGTCAAGACATGGCATCGGCA-T-TGA
1 TAAGGATACCATGTAAGACCACATCAAGACATGGCATCGGCACTATGA
** *
76637531 TTAAGGACT-CCATGTAAGACCACATCAAGATGTGGCATTGGCACTATGA
1 -TAAGGA-TACCATGTAAGACCACATCAAGACATGGCATCGGCACTATGA
76637580 TAAGGATACCATGTAAGACC
1 TAAGGATACCATGTAAGACC
76637600 TTGTTTGGAA
Statistics
Matches: 91, Mismatches: 17, Indels: 11
0.76 0.14 0.09
Matches are distributed among these distances:
45 33 0.36
46 1 0.01
47 34 0.37
48 20 0.22
49 3 0.03
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.22
Consensus pattern (48 bp):
TAAGGATACCATGTAAGACCACATCAAGACATGGCATCGGCACTATGA
Found at i:76637639 original size:47 final size:47
Alignment explanation
Indices: 76637581--76637696 Score: 205
Period size: 47 Copynumber: 2.5 Consensus size: 47
76637571 GCACTATGAT
*
76637581 AAGGATACCATGTAAGACCTTGTTTGGAACATGGCATTTGGTAAGAC
1 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
*
76637628 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAT
1 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
*
76637675 AAGGATATCATGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
76637697 CCAAGGCATG
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (47 bp):
AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
Found at i:76637739 original size:54 final size:54
Alignment explanation
Indices: 76637675--76637990 Score: 386
Period size: 55 Copynumber: 5.8 Consensus size: 54
76637665 TTGGTAAGAT
* *
76637675 AAGGATATCATGTAAGACCATGCCAAGGCATGACATTGATAAGTTCTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * *
76637729 AAGGAAATCATGAAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGC
** * *
76637784 AAAGG-TCCCATGTAAGACCATGCTAAGGCATGGCATTGATAAGTTCTATAAGGC
1 -AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
*
76637838 AAGGAAATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGC
* * * *
76637893 AAAGG-TCTCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * * * *
76637946 AATGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT
76637991 TAAAAAGGAA
Statistics
Matches: 224, Mismatches: 32, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
52 3 0.01
53 44 0.20
54 84 0.38
55 85 0.38
56 8 0.04
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:76637874 original size:109 final size:109
Alignment explanation
Indices: 76637683--76637990 Score: 483
Period size: 109 Copynumber: 2.8 Consensus size: 109
76637673 ATAAGGATAT
* *
76637683 CATGTAAGACCATGCCAAGGCATGACATTGATAAGTTCTATAAGGCAAGGAAATCATGAAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
*
76637748 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
66 ATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCC
*
76637792 CATGTAAGACCATGCTAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
* *
76637857 ATGCCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCT
66 ATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCC
* * * * * *
76637901 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAATGATACCACGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
* *
76637965 ATGTCAAGACATGGCAATGGTAAGTT
66 ATGTCAAGACATGGCATTGATAAGTT
76637991 TAAAAAGGAA
Statistics
Matches: 183, Mismatches: 16, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
108 45 0.25
109 138 0.75
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.23
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
ATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCC
Found at i:76642247 original size:93 final size:93
Alignment explanation
Indices: 76642135--76642306 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
76642125 GCCCATAAGT
* * *
76642135 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGTCTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
76642200 CGAGTTCGGATGCCTAGTTACATCTCTC
66 CGAGTTCGGATGCCTAGTTACATCTCTC
*
76642228 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
76642293 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
76642307 CAAACATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:76642302 original size:46 final size:46
Alignment explanation
Indices: 76642127--76642302 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
76642117 TGTAACCCGC
* * *
76642127 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
76642173 CCATAAGTGAACTCGGTCTCAACTCAACGAGTTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* ***
76642219 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
76642266 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
76642303 TGCCCAAACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 68 0.62
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:76644724 original size:15 final size:15
Alignment explanation
Indices: 76644695--76644744 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
76644685 CAAAGATAAC
*
76644695 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
76644709 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
76644724 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
76644739 AAGAAA
1 AAGAAA
76644745 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.60, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:76644753 original size:15 final size:15
Alignment explanation
Indices: 76644706--76644753 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
76644696 AGAAAACCGA
76644706 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
76644720 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
76644736 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
76644751 ATA
1 ATA
76644754 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:76647805 original size:93 final size:93
Alignment explanation
Indices: 76647693--76647864 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
76647683 GCCCATAAGT
* *
76647693 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
76647758 CGAGTTCGGATGCCTAGTTACATCTCTC
66 CGAGTTCGGATGCCTAGTTACATCTCTC
*
76647786 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
76647851 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
76647865 CAAACATCCT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:76647860 original size:46 final size:46
Alignment explanation
Indices: 76647685--76647860 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
76647675 TGTAACCCGC
* * *
76647685 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
76647731 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* ***
76647777 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
76647824 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
76647861 TGCCCAAACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 69 0.62
47 33 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:76654537 original size:22 final size:22
Alignment explanation
Indices: 76654511--76654557 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
76654501 TGCACCAGAA
*
76654511 TTTAAAGAAAATTATGATTAAT
1 TTTAAAGAAAATTATAATTAAT
* * *
76654533 TTTAAATAAATTTATAATTTAT
1 TTTAAAGAAAATTATAATTAAT
76654555 TTT
1 TTT
76654558 TTTGAATTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (22 bp):
TTTAAAGAAAATTATAATTAAT
Found at i:76657240 original size:36 final size:36
Alignment explanation
Indices: 76657193--76657266 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
76657183 TAAATTTGTC
76657193 TAAAAGTACTTAGTTGGTATCTGAATTTTATATATA
1 TAAAAGTACTTAGTTGGTATCTGAATTTTATATATA
76657229 TAAAAGTACTTAGTTGGTATCTGAATTTTATATATA
1 TAAAAGTACTTAGTTGGTATCTGAATTTTATATATA
76657265 TA
1 TA
76657267 TACCTAAACT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.36, C:0.05, G:0.14, T:0.45
Consensus pattern (36 bp):
TAAAAGTACTTAGTTGGTATCTGAATTTTATATATA
Found at i:76670687 original size:7 final size:7
Alignment explanation
Indices: 76670675--76670699 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
76670665 GGGTACATTG
76670675 GAAATGA
1 GAAATGA
76670682 GAAATGA
1 GAAATGA
76670689 GAAATGA
1 GAAATGA
76670696 GAAA
1 GAAA
76670700 AGGGAGGGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.28, T:0.12
Consensus pattern (7 bp):
GAAATGA
Found at i:76678461 original size:133 final size:131
Alignment explanation
Indices: 76678297--76678567 Score: 357
Period size: 133 Copynumber: 2.1 Consensus size: 131
76678287 GATTAAATCA
* * *
76678297 TTTT-TCTCGATTATTTTGATTTTTGTCATATGAATTTGATACTCAAATTTCAATAAATTAAAAT
1 TTTTCTCTCGATTATGTCGAGTTTTGTCATATGAATTTGATACTCAAATTTCAATAAATTAAAAT
* * * * *
76678361 GAATTGTCTTT-GTCATTCTAAGTTTGTGATACATTTTTTTTAATGTTAGTTTTGGATTGAATCA
66 GAACTGT-TTTCATCATTCTAAGTTTGTGATACA-TTTTTTT-ATGTCAGTTTCGAATTGAATCA
76678425 TTTT
128 TTTT
* * * * *
76678429 TTTTCTCTCGATTATGTCGAGTTTTGTCATATGAGTTTGATACTCAAATTTGAATCATTTTAAAT
1 TTTTCTCTCGATTATGTCGAGTTTTGTCATATGAATTTGATACTCAAATTTCAATAAATTAAAAT
* * *
76678494 TAACTGTTTTCATCATTCTAAGTTTGTGATACATTTTTTTATGTCGGTTTCGAATTGAGTCATTT
66 GAACTGTTTTCATCATTCTAAGTTTGTGATACATTTTTTTATGTCAGTTTCGAATTGAATCATTT
76678559 T
131 T
76678560 TTTTCTCT
1 TTTTCTCT
76678568 AAATAATATA
Statistics
Matches: 121, Mismatches: 16, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
131 29 0.24
132 14 0.12
133 78 0.64
ACGTcount: A:0.25, C:0.11, G:0.13, T:0.52
Consensus pattern (131 bp):
TTTTCTCTCGATTATGTCGAGTTTTGTCATATGAATTTGATACTCAAATTTCAATAAATTAAAAT
GAACTGTTTTCATCATTCTAAGTTTGTGATACATTTTTTTATGTCAGTTTCGAATTGAATCATTT
T
Found at i:76678742 original size:215 final size:220
Alignment explanation
Indices: 76678364--76678781 Score: 587
Period size: 215 Copynumber: 1.9 Consensus size: 220
76678354 TTAAAATGAA
** * ** *
76678364 TTGTCTTTGTCATTCTAAGTTTGTGATACATTTTTTTTAATGTTAGTTTTGGATTGAATCATTTT
1 TTGTCTTCATCATTCTAAGTTTGGGATACATTTTTTTT-ATGCCAGTTTCGGATTGAATCA-TTT
* * * *
76678429 TTTTCTCTCGATTATGTCGAGTTTTGTCATATGAGTTTGATACTCAAATTTGAATCATTTTAAAT
64 TTTTCTCTCGATAATATCGAATTTTGTCATATGAGTTTGATACTCAAATTTGAATCATTTGAAAT
* * ** *
76678494 TAACTGTTTTCATCATTCTAAGTTTGTGATACATTTTTTTATGTCGGTT-TCGAATTGAGTCATT
129 TAACTGTTTTCATCATTCTAAGTTTGGGATACATTTTTTAATGTCAATTCT-GAATTGAATCATT
76678558 TTTTTTCTCTAAATAATATAATGTTTTG
193 TTTTTTCTCTAAATAATATAATGTTTTG
76678586 TTGTCTTCATCATTCTAAGTTTGGGATACA-TTTTTTT-TGCCAGTTTCGGATTGAATCA-TTTT
1 TTGTCTTCATCATTCTAAGTTTGGGATACATTTTTTTTATGCCAGTTTCGGATTGAATCATTTTT
*
76678648 TTC-CT-GATAATATCGAATTTTGTCATATGAGTTTGATACTCAAATTTGAATTATTTGAAATTA
66 TTCTCTCGATAATATCGAATTTTGTCATATGAGTTTGATACTCAAATTTGAATCATTTGAAATTA
** * *
76678711 ACTGTTTTTGTCCTTCTAAGTTTGGGATACATTTTTTAATGTCAATTCTGGATTGAATCATTTTT
131 ACTGTTTTCATCATTCTAAGTTTGGGATACATTTTTTAATGTCAATTCTGAATTGAATCATTTTT
76678776 TTTCTC
196 TTTCTC
76678782 GTTAATATAA
Statistics
Matches: 175, Mismatches: 20, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
215 113 0.65
216 3 0.02
217 7 0.04
219 18 0.10
221 7 0.04
222 27 0.15
ACGTcount: A:0.24, C:0.11, G:0.14, T:0.51
Consensus pattern (220 bp):
TTGTCTTCATCATTCTAAGTTTGGGATACATTTTTTTTATGCCAGTTTCGGATTGAATCATTTTT
TTCTCTCGATAATATCGAATTTTGTCATATGAGTTTGATACTCAAATTTGAATCATTTGAAATTA
ACTGTTTTCATCATTCTAAGTTTGGGATACATTTTTTAATGTCAATTCTGAATTGAATCATTTTT
TTTCTCTAAATAATATAATGTTTTG
Found at i:76679070 original size:137 final size:135
Alignment explanation
Indices: 76678822--76679264 Score: 393
Period size: 129 Copynumber: 3.4 Consensus size: 135
76678812 GAATTTGAAT
* * *
76678822 AATTTGAAATTAATTCTCTTTCATCATTCTAAGTTTGGAATACATTTTTTTATGTTGGTTTCAAG
1 AATTTGAAATTAATTCTCTTTCATCATTCTAAGTTTGGAATACATTTTTTTATATCGGTTTCAAA
* *
76678887 TTAATAATTTTTTCCTCGATAATATTGAGTTTTGTCATATGAGTTTGATACTCAAATCTAAATCA
66 TTAATAATTTTTTCCTCGATAATATCGAGTTTTGTCAAATGAGTTTGATACTCAAATCTAAATCA
76678952 TTTGA
131 TTTGA
* * * *
76678957 AATTTGAAATTATTTGTC-TTCATTATTCTATA-TTTGGGATACATTTTTTTATATCGGTTTCAA
1 AATTTGAAATTAATTCTCTTTCATCATTCTA-AGTTTGGAATACATTTTTTTATATCGGTTTCAA
* ***
76679020 ATTGAATCATTTTTTTCTCTCGATAATATCGAGTTTTGTCAAATGAGTTTGATACTTGGAT-T--
65 ATT-AAT-AATTTTTTC-CTCGATAATATCGAGTTTTGTCAAATGAGTTTGATACTCAAATCTAA
* *
76679082 -TGA-AT-A
127 ATCATTTGA
* * * *
76679088 AATTTGAAATTAGA-TGTCTTT-GTCATTCTAAGTTTGGAATACATTTTTTTTATGTCGGTTTCG
1 AATTTGAAATTA-ATTCTCTTTCATCATTCTAAGTTTGGAATACA-TTTTTTTATATCGGTTTCA
** * * * *** *
76679151 GGTTGAATCA-TTTTTCCTCTATAATATTGAGTTTTGTTGTATGAGTTTGATACTCGAAT-T---
64 AATT-AATAATTTTTTCCTCGATAATATCGAGTTTTGTCAAATGAGTTTGATACTCAAATCTAAA
* *
76679211 TGA-AT--
128 TCATTTGA
* * *
76679216 AATTTGAAATTAATTGTCTTT-GTCATTCTAAGTTTGGATTACATTTTTT
1 AATTTGAAATTAATTCTCTTTCATCATTCTAAGTTTGGAATACATTTTTT
76679265 GATGTCACTT
Statistics
Matches: 266, Mismatches: 33, Indels: 26
0.82 0.10 0.08
Matches are distributed among these distances:
127 7 0.03
128 40 0.15
129 42 0.16
130 7 0.03
131 34 0.13
132 26 0.10
133 2 0.01
134 41 0.15
135 20 0.08
136 9 0.03
137 38 0.14
ACGTcount: A:0.27, C:0.10, G:0.14, T:0.49
Consensus pattern (135 bp):
AATTTGAAATTAATTCTCTTTCATCATTCTAAGTTTGGAATACATTTTTTTATATCGGTTTCAAA
TTAATAATTTTTTCCTCGATAATATCGAGTTTTGTCAAATGAGTTTGATACTCAAATCTAAATCA
TTTGA
Found at i:76679380 original size:385 final size:384
Alignment explanation
Indices: 76678586--76679473 Score: 1006
Period size: 385 Copynumber: 2.3 Consensus size: 384
76678576 TAATGTTTTG
* *
76678586 TTGTCTTCATCATTCTAAGTTTGGGATACATTTTTTT-TGCCAGTTTCGGATTGAATCA-TTTTT
1 TTGTCTTCATCATTCTAAGTTTGGGATACATTTTTTTATGTCGGTTTCGGATTGAATCATTTTTT
* ** *
76678649 TC-CTGATAATATCGAATTTTGTCATATGAGTTTGATACTCAAATTTGAAT-TATTTGAAATTAA
66 TCTCTGATAATATCGAGTTTTGTCATATGAGTTTGATACTTGAATTTGAATAAATTTGAAATTAA
* * *
76678712 CTGTTTTTGTCCTTCTAAGTTTGGGATACATTTTTTAATGTCAATTCTGGATTGAATCATTTTTT
131 CTGTCTTTGTCATTCTAAGTTTGGAATACATTTTTTAATGTCAATTCTGGATTGAATCA-TTTTT
* *
76678777 TTCTCGTTAATATAAAGTTTTGTCATACGATATTCGAATTTGAATAATTTGAAATTAATTCTCTT
195 TCCTCGTTAATATAAAGTTTTGTCATACGATACTCGAATTTGAATAATTTGAAATTAATTCTCTT
* *** *
76678842 TCATCATTCTAAGTTTGGAATACATTTTTTTATGTTGGTTTCAAGTTAATAATTTTTTCCTCGAT
260 TCATCATTCTAAGTTTGGAATACATTTTTTGATGTCACTTTCAAGTTAATAATTTTTTCCTCGAC
** *
76678907 AATATTGAGTTTTGTCATATGAGTTTGATACTCAAATCTAAATCATTTGAAATTTGAAATTAT
325 AATATTGAGTTTTGTCATACAAGTTTGATACTCAAATATAAATCATTTGAAATTT--AA-TAT
* * **
76678970 TTGTCTTCATTATTCTATA-TTTGGGATACATTTTTTTATATCGGTTTCAAATTGAATCATTTTT
1 TTGTCTTCATCATTCTA-AGTTTGGGATACATTTTTTTATGTCGGTTTCGGATTGAATCATTTTT
* *
76679034 TTCTCTCGATAATATCGAGTTTTGTCAAATGAGTTTGATACTTGGATTTGAATAAATTTGAAATT
65 TTCTCT-GATAATATCGAGTTTTGTCATATGAGTTTGATACTTGAATTTGAATAAATTTGAAATT
* ** *
76679099 AGA-TGTCTTTGTCATTCTAAGTTTGGAATACATTTTTTTTATGTCGGTT-TCGGGTTGAATCA-
129 A-ACTGTCTTTGTCATTCTAAGTTTGGAATACA-TTTTTTAATGTCAATTCT-GGATTGAATCAT
** * *
76679161 TTTTTCCTC-TATAATATTGAGTTTTGTTGTATGAGTTTGATACTCGAATTTGAATAATTTGAAA
191 TTTTTCCTCGT-TAATATAAAGTTTTG-T-CAT-A---CGATACTCGAATTTGAATAATTTGAAA
* * * * *
76679225 TTAATTGTCTTT-GTCATTCTAAGTTTGGATTACATTTTTTGATGTCACTTTC-GGATTAAATCA
249 TTAATTCTCTTTCATCATTCTAAGTTTGGAATACATTTTTTGATGTCACTTTCAAG-TT-AATAA
* * * **
76679288 TTTTTT-CTTGACAATATCT-AGTTTTGTTATACAAGTTTGATATTTGAATATAAAT-ATTTGAA
312 TTTTTTCCTCGACAATAT-TGAGTTTTGTCATACAAGTTTGATACTCAAATATAAATCATTTGAA
76679350 A-TT-A-A-
376 ATTTAATAT
** *
76679355 TTGTCTTCGCCATTCTAAGTTTGGGATACATTTTTTTTATGTCGGTTTCGGATTGAATTATTATT
1 TTGTCTTCATCATTCTAAGTTTGGGATACA-TTTTTTTATGTCGGTTTCGGATTGAATCATT-TT
* *
76679420 ATTT-T-TGATAATATTGAGTTTTGTCATATGAGTTTGATAATTGAATTTGAATAA
64 -TTTCTCTGATAATATCGAGTTTTGTCATATGAGTTTGATACTTGAATTTGAATAA
76679474 TTGTCTTTGT
Statistics
Matches: 427, Mismatches: 54, Indels: 45
0.81 0.10 0.09
Matches are distributed among these distances:
384 35 0.08
385 86 0.20
386 36 0.08
387 6 0.01
388 66 0.15
389 39 0.09
390 26 0.06
391 3 0.01
392 9 0.02
393 74 0.17
394 47 0.11
ACGTcount: A:0.27, C:0.10, G:0.15, T:0.48
Consensus pattern (384 bp):
TTGTCTTCATCATTCTAAGTTTGGGATACATTTTTTTATGTCGGTTTCGGATTGAATCATTTTTT
TCTCTGATAATATCGAGTTTTGTCATATGAGTTTGATACTTGAATTTGAATAAATTTGAAATTAA
CTGTCTTTGTCATTCTAAGTTTGGAATACATTTTTTAATGTCAATTCTGGATTGAATCATTTTTT
CCTCGTTAATATAAAGTTTTGTCATACGATACTCGAATTTGAATAATTTGAAATTAATTCTCTTT
CATCATTCTAAGTTTGGAATACATTTTTTGATGTCACTTTCAAGTTAATAATTTTTTCCTCGACA
ATATTGAGTTTTGTCATACAAGTTTGATACTCAAATATAAATCATTTGAAATTTAATAT
Found at i:76679390 original size:127 final size:125
Alignment explanation
Indices: 76678958--76679472 Score: 534
Period size: 127 Copynumber: 4.0 Consensus size: 125
76678948 ATCATTTGAA
* * * * **
76678958 ATTTGAAATTATTTGTCTTCATTATTCTATA-TTTGGGATACATTTTTTTATATCGGTTTCAAAT
1 ATTTGAAATTAATTGTCTTCGTCATTCTA-AGTTTGGGATACATTTTTTTATGTCGGTTTCGGAT
* * *
76679022 TGAATCATTTTTTTCTCTCGATAATATCGAGTTTTGTCAAATGAGTTTGATACTTGGATTTGAAT
65 TGAATCA-TTTTTTCT-T-GATAATAT-TAGTTTTGTCATATGAGTTTGATACTTGAATTT-AA-
*
76679087 AA
124 AT
* * *
76679089 ATTTGAAATTAGA-TGTCTTTGTCATTCTAAGTTTGGAATACATTTTTTTTATGTCGGTTTCGGG
1 ATTTGAAATTA-ATTGTCTTCGTCATTCTAAGTTTGGGATACA-TTTTTTTATGTCGGTTTCGGA
* ** * *
76679153 TTGAATCATTTTTCCTCT-ATAATATTGAGTTTTGTTGTATGAGTTTGATACTCGAATTTGAAT
64 TTGAATCATTTTTTCT-TGATAATATT-AGTTTTGTCATATGAGTTTGATACTTGAATTTAAAT
* * **
76679216 AATTTGAAATTAATTGTCTTTGTCATTCTAAGTTT-GGATTACATTTTTTGATGTCACTTTCGGA
1 -ATTTGAAATTAATTGTCTTCGTCATTCTAAGTTTGGGA-TACATTTTTTTATGTCGGTTTCGGA
* * * ** * *
76679280 TTAAATCATTTTTTCTTGACAATATCTAGTTTTGTTATACAAGTTTGATATTTGAATATAAAT
64 TTGAATCATTTTTTCTTGATAATAT-TAGTTTTGTCATATGAGTTTGATACTTGAATTTAAAT
*
76679343 ATTTGAAATTAATTGTCTTCGCCATTCTAAGTTTGGGATACATTTTTTTTATGTCGGTTTCGGAT
1 ATTTGAAATTAATTGTCTTCGTCATTCTAAGTTTGGGATACA-TTTTTTTATGTCGGTTTCGGAT
* * * *
76679408 TGAATTATTATTATTTTTGATAATATTGAGTTTTGTCATATGAGTTTGATAATTGAATTTGAAT
65 TGAATCATT-TT-TTCTTGATAATATT-AGTTTTGTCATATGAGTTTGATACTTGAATTTAAAT
76679472 A
1 A
76679473 ATTGTCTTTG
Statistics
Matches: 322, Mismatches: 48, Indels: 30
0.81 0.12 0.08
Matches are distributed among these distances:
126 37 0.11
127 99 0.31
128 41 0.13
129 76 0.24
130 1 0.00
131 43 0.13
132 25 0.08
ACGTcount: A:0.27, C:0.09, G:0.15, T:0.49
Consensus pattern (125 bp):
ATTTGAAATTAATTGTCTTCGTCATTCTAAGTTTGGGATACATTTTTTTATGTCGGTTTCGGATT
GAATCATTTTTTCTTGATAATATTAGTTTTGTCATATGAGTTTGATACTTGAATTTAAAT
Found at i:76679627 original size:109 final size:106
Alignment explanation
Indices: 76679498--76679693 Score: 236
Period size: 109 Copynumber: 1.8 Consensus size: 106
76679488 TTAGGATACG
* * * *
76679498 TTTCAGATTGAATCA-TTTTTTCTCTGATAATATTGAGTTATGTTATATGAGTTTGATACTT-GA
1 TTTCAGATTGAATCATTTTTTTCTC-AATAATATCGAGTTATG-T-CAT-A-TTTGATA-TTCAA
*
76679561 ATTTGAATCATTTG-AATTAACTGTCTTAAACATATTTTGATGTCGT
60 ATTTAAATCATTTGAAATTAACTGTCTTAAACATATTTTGATGTCGT
* * * *
76679607 TTTCTGATTGAATCGTTTTTTTCTCAATAATATCGTGTTTTGTCATATTTGATATTCAAATTTAA
1 TTTCAGATTGAATCATTTTTTTCTCAATAATATCGAGTTATGTCATATTTGATATTCAAATTTAA
76679672 ATCATTTGAAATTAACTGTCTT
66 ATCATTTGAAATTAACTGTCTT
76679694 TATCATTTTA
Statistics
Matches: 75, Mismatches: 9, Indels: 9
0.81 0.10 0.10
Matches are distributed among these distances:
104 2 0.03
105 21 0.28
106 14 0.19
107 2 0.03
108 1 0.01
109 26 0.35
110 9 0.12
ACGTcount: A:0.28, C:0.10, G:0.13, T:0.49
Consensus pattern (106 bp):
TTTCAGATTGAATCATTTTTTTCTCAATAATATCGAGTTATGTCATATTTGATATTCAAATTTAA
ATCATTTGAAATTAACTGTCTTAAACATATTTTGATGTCGT
Found at i:76680988 original size:132 final size:132
Alignment explanation
Indices: 76680831--76681097 Score: 516
Period size: 132 Copynumber: 2.0 Consensus size: 132
76680821 TATGCCTAAT
* *
76680831 TTAATTGATGTAATGCGAATATTTTTTTACCTATTTTAATTAAAACGTTTCAAAATTTTGAGATT
1 TTAATTGATGTAATGCCAATATTTTTATACCTATTTTAATTAAAACGTTTCAAAATTTTGAGATT
76680896 ATTTTAGCATTTGAGATATAATTAAAAATAGCTTAATACCTATTTTAGTCCCTATATTATAGTGA
66 ATTTTAGCATTTGAGATATAATTAAAAATAGCTTAATACCTATTTTAGTCCCTATATTATAGTGA
76680961 AA
131 AA
76680963 TTAATTGATGTAATGCCAATATTTTTATACCTATTTTAATTAAAACGTTTCAAAATTTTGAGATT
1 TTAATTGATGTAATGCCAATATTTTTATACCTATTTTAATTAAAACGTTTCAAAATTTTGAGATT
76681028 ATTTTAGCATTTGAGATATAATTAAAAATAGCTTAATACCTATTTTAGTCCCTATATTATAGTGA
66 ATTTTAGCATTTGAGATATAATTAAAAATAGCTTAATACCTATTTTAGTCCCTATATTATAGTGA
76681093 AA
131 AA
76681095 TTA
1 TTA
76681098 TCACTTTTAC
Statistics
Matches: 133, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
132 133 1.00
ACGTcount: A:0.37, C:0.09, G:0.10, T:0.44
Consensus pattern (132 bp):
TTAATTGATGTAATGCCAATATTTTTATACCTATTTTAATTAAAACGTTTCAAAATTTTGAGATT
ATTTTAGCATTTGAGATATAATTAAAAATAGCTTAATACCTATTTTAGTCCCTATATTATAGTGA
AA
Found at i:76681279 original size:32 final size:32
Alignment explanation
Indices: 76681243--76681305 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 32
76681233 GACAATAATA
**
76681243 AAGGGACCAATGTGAGAATTTCACTATAGTAC
1 AAGGGACCAAACTGAGAATTTCACTATAGTAC
** *
76681275 AAGGGGTCAAACTGAGAATTTCGCTATAGTA
1 AAGGGACCAAACTGAGAATTTCACTATAGTA
76681306 GAGTGCCTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (32 bp):
AAGGGACCAAACTGAGAATTTCACTATAGTAC
Found at i:76682263 original size:199 final size:198
Alignment explanation
Indices: 76681917--76683301 Score: 1583
Period size: 199 Copynumber: 6.9 Consensus size: 198
76681907 AAAAAAGAAG
*
76681917 AAGCTCCTTTTAGTAGTTAAGCTAGACAAGGCTTTGATTGCAGGATTTGCAAATGCTTGTCCAAT
1 AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCAGGATTTGCAAATGCTTGTCCAAT
* * * *
76681982 ACATATTCATATCTGATACTCATGCTTGAGTCCGAGTAATATAAGCTAAAGTCAAGCTTTAGCCA
66 ACATATCCATATCTGACACTCATGCTTGAGTCCGAGTAACATAAGCTAAA-TCGAGCTTTAGCCA
* * * *
76682047 TCGGCTAATGGTAGCCCCAGAATCTTATCCAGTTGGTTTGAGGTGTGAAGAGGCTCCAAATGCCT
130 TCGGCTAATGGTAGCCCCAGAATCTTATCTAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTGCCT
*
76682112 TACA
195 TAAA
* *
76682116 AAGCTTCTTTTAGTAGTTAAGCCAGACAAGGCTTGGATTGCAGGATTTGCAAATGCTTGTCCAAT
1 AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCAGGATTTGCAAATGCTTGTCCAAT
* * * *
76682181 ACATATTCATATCTGATACTCATGCTTGAGTCCGAGTAATATAAGCTAAAGTCAAGCTTTAGCCA
66 ACATATCCATATCTGACACTCATGCTTGAGTCCGAGTAACATAAGCTAAA-TCGAGCTTTAGCCA
* * *
76682246 TCGGCTAATGGTAGCCCCAGAATCTTATGC-AGTTGGTTTGAGGTGTGAAGAGGCTCCAAATGCC
130 TCGGCTAATGGTAGCCCCAGAATCTTAT-CTAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTGCC
*
76682310 TTACA
194 TTAAA
* *
76682315 AAGCTTCTTTTAGTAGTTAAGCCAGACAAGGCTTGGATTGCAGGATTTGCAAATGCTTGTCCAAT
1 AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCAGGATTTGCAAATGCTTGTCCAAT
* * * * *
76682380 ACATATTCATATCTAATACTCATGCTTGAGTCCGAGTAACATAAGCTTAAAGCGAGCTTTAGCCG
66 ACATATCCATATCTGACACTCATGCTTGAGTCCGAGTAACATAAGC-TAAATCGAGCTTTAGCCA
* * * * * *
76682445 TTGCCTAATGGTAACCCCAGAGTCTTATCTAGGTGATTTAAGGTGTGAAGAGGATCCAATTGCCT
130 TCGGCTAATGGTAGCCCCAGAATCTTATCTAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTGCCT
76682510 TAAA
195 TAAA
* * * **
76682514 AAGTTCCTTTTAGTAGTTAAGCTAGACAAGGCTTTGATTCCAGGATTTGCAAATGCTTGTCTGGA
1 AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCAGGATTTGCAAATGCTTGTC-CAA
* * * * * *
76682579 -ACATATCCGTATTTGACACTCACATGCTTGAGTTCAAATAACATAAGCTCAAATTGAGCTTTAG
65 TACATATCCATATCTGACACT--CATGCTTGAGTCCGAGTAACATAAGCT-AAATCGAGCTTTAG
* * *
76682643 CCATTGGCTAATGGTAACCCCAGAATC---T-TA-----TTTAA-GTGTGAAGAGGCTTCAATTG
127 CCATCGGCTAATGGTAGCCCCAGAATCTTATCTAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTG
*
76682698 CCTTTAA
192 CCTTAAA
* ** ** *
76682705 AAGCTCCTTTTAGTAGTTAAGCCAAACAAGGCTTCAATTGGGGGATTTGTAAATGCTTGCCGGAT
1 AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCAGGATTTGCAAATGCTT----G-T
* * * *
76682770 AGGACCAATACATATCCATGTCTGACAGTCATGTTTGAGTCAGAGTAACATAAGCTTAAATCGAG
61 ----CCAATACATATCCATATCTGACACTCATGCTTGAGTCCGAGTAACATAAGC-TAAATCGAG
* * * * *
76682835 CTTTAGCCATTGCCTAATGGTAACCCAAGAATCTTATCTGGGTGGTTTAAGGTGTGAAGAGGCTC
121 CTTTAGCCATCGGCTAATGGTAGCCCCAGAATCTTATCTAGGTGGTTTAAGGTGTGAAGAGGCTC
76682900 CAATTGCCTTAAA
186 CAATTGCCTTAAA
** * * * * **
76682913 AAGCTCCTTTTAGTAGTTAAGCTGGACAAGGCTTTGATTCCGGGATTTGCCAATTCTTGTCCTGT
1 AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCAGGATTTGCAAATGCTTGTCCAAT
* * * * *
76682978 ACATATCCATATTTTGACACTCATGCTTGATTCTGAGTAACATAAGCTCAAATCAAGCTTTAGTC
66 ACATATCCATA-TCTGACACTCATGCTTGAGTCCGAGTAACATAAGCT-AAATCGAGCTTTAGCC
* ** * * *
76683043 AT-TGCTTACCGGTAGCCTCAAAATCTTATTATAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTG
129 ATCGGC-TAATGGTAGCCCCAGAATCTTA-TCTAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTG
*
76683107 CTTTAAA
192 CCTTAAA
* * *** ** *
76683114 AACCTCCTTTTAGTAGTTAAGCCAAACAAGGCTTTGATTATGGGATTCACAAATGCTTGTCCGAT
1 AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCAGGATTTGCAAATGCTTGTCCAAT
* *
76683179 ACATATCCGTATCTGACACTCATGTTTGAG-CCTGAGTAACATAAGCTCAAATCGAGCTTTAGCC
66 ACATATCCATATCTGACACTCATGCTTGAGTCC-GAGTAACATAAGCT-AAATCGAGCTTTAGCC
* **
76683243 ATCAGCTAACAGTAGCCCCAGAATCTTATCATAGGTGGTTTAAGGTGTGAAGAGGCTCC
129 ATCGGCTAATGGTAGCCCCAGAATCTTATC-TAGGTGGTTTAAGGTGTGAAGAGGCTCC
76683302 TATTTTTACC
Statistics
Matches: 1028, Mismatches: 123, Indels: 69
0.84 0.10 0.06
Matches are distributed among these distances:
191 73 0.07
192 5 0.00
195 1 0.00
196 1 0.00
197 2 0.00
198 61 0.06
199 461 0.45
200 179 0.17
201 164 0.16
202 1 0.00
203 1 0.00
204 1 0.00
207 5 0.00
208 73 0.07
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (198 bp):
AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCAGGATTTGCAAATGCTTGTCCAAT
ACATATCCATATCTGACACTCATGCTTGAGTCCGAGTAACATAAGCTAAATCGAGCTTTAGCCAT
CGGCTAATGGTAGCCCCAGAATCTTATCTAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTGCCTT
AAA
Found at i:76683221 original size:598 final size:588
Alignment explanation
Indices: 76681920--76683271 Score: 1604
Period size: 598 Copynumber: 2.3 Consensus size: 588
76681910 AAAGAAGAAG
* *
76681920 CTCCTTTTAGTAGTTAAGCTAGACAAGGCTTTGATTGCAGGATTTGCAAATGCTTGTCCAATACA
1 CTCCTTTTAGTAGTTAAGCTAGACAAGGCTTTGATTACAGGATTTGCAAATGCTTGTCCGATACA
* * * * *
76681985 TATTCATATCTGATACTCATGCTTGAGTCC-GAGTAATATAAGCT-AAAGTCAAGCTTTAGCCAT
66 TATCCGTATCTGACACTCATGCTTGAG-CCTGAGTAACATAAGCTCAAA-TCGAGCTTTAGCCAT
*
76682048 CGGCTAATGGTAGCCCCAGAATCTTATCCAGTTGGTTTGAGGTGTGAAGAGGCTCCAAATGCCTT
129 CGGCTAATGGTAGCCCCAGAATC-T-T--A-----TTTGAAGTGTGAAGAGGCTCCAAATGCCTT
* * **
76682113 ACAAAGCTTCTTTTAGTAGTTAAGCCAGACAAGGCTTGGATTGCAGGATTTGCAAATGCTTGTCC
185 ACAAAGCTCCTTTTAGTAGTTAAGCCAAACAAGGCTTCAATTGCAGGATTTGCAAATGCTTGTCC
* * * *
76682178 AATACATATTCATATCTGATACTCATGCTTGAGTCCGAGTAATATAAGCTAAAGTCAAGCTTTAG
250 AATACATATCCATATCTGACACTCATGCTTGAGTCAGAGTAACATAAGCTAAAGTCAAGCTTTAG
* * * * *
76682243 CCATCGGCTAATGGTAGCCCCAGAATCTTATGCAGTTGGTTTGAGGTGTGAAGAGGCTCCAAATG
315 CCATCGCCTAATGGTAACCCAAGAATCTTATGCAGGTGGTTTAAGGTGTGAAGAGGCTCCAAATG
* * *
76682308 CCTTACAAAGCTTCTTTTAGTAGTTAAGCCAGACAAGGCTTGGATTGCAGGATTTGCAAATGCTT
380 CCTTAAAAAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTGGATTCCAGGATTTGCAAATGCTT
* * * *
76682373 GTCCAATACATATTCATATCTAATACTCATGCTTGAGTCCGAGTAACATAAGCTTAAAGCGAGCT
445 GTCCAATACATATCCATATCTAACACTCATGCTTGAGTCCGAGTAACATAAGCTCAAAGCAAGCT
* * * * *
76682438 TTAGCCGTTGCCTAATGGTAACCCCAGAGTCTTATCTAGGTGATTTAAGGTGTGAAGAGGATCCA
510 TTAGCCATTGCCTAACGGTAACCCCAAAATCTTATATAGGTGATTTAAGGTGTGAAGAGGATCCA
*
76682503 ATTGCCTTAAAAAG
575 ATTGCCTTAAAAAC
* * *
76682517 TTCCTTTTAGTAGTTAAGCTAGACAAGGCTTTGATTCCAGGATTTGCAAATGCTTGTCTGGA-AC
1 CTCCTTTTAGTAGTTAAGCTAGACAAGGCTTTGATTACAGGATTTGCAAATGCTTGTC-CGATAC
* * * * *
76682581 ATATCCGTATTTGACACTCACATGCTTGAG-TTCAAATAACATAAGCTCAAATTGAGCTTTAGCC
65 ATATCCGTATCTGACACT--CATGCTTGAGCCT-GAGTAACATAAGCTCAAATCGAGCTTTAGCC
* * * *
76682645 ATTGGCTAATGGTAACCCCAGAATCTTATTT-AAGTGTGAAGAGGCTTCAATTGCCTTTA-AAAG
127 ATCGGCTAATGGTAGCCCCAGAATCTTATTTGAAGTGTGAAGAGGCTCCAAATGCC-TTACAAAG
** *
76682708 CTCCTTTTAGTAGTTAAGCCAAACAAGGCTTCAATTGGGGGATTTGTAAATGCTTGCCGGATAGG
191 CTCCTTTTAGTAGTTAAGCCAAACAAGGCTTCAATTGCAGGATTTGCAAATGCTT----G-T---
* * * *
76682773 ACCAATACATATCCATGTCTGACAGTCATGTTTGAGTCAGAGTAACATAAGCTTAAA-TCGAGCT
248 -CCAATACATATCCATATCTGACACTCATGCTTGAGTCAGAGTAACATAAGC-TAAAGTCAAGCT
* *
76682837 TTAGCCATTGCCTAATGGTAACCCAAGAATCTTAT-CTGGGTGGTTTAAGGTGTGAAGAGGCTCC
311 TTAGCCATCGCCTAATGGTAACCCAAGAATCTTATGC-AGGTGGTTTAAGGTGTGAAGAGGCTCC
* ** * * *
76682901 AATTGCCTTAAAAAGCTCCTTTTAGTAGTTAAGCTGGACAAGGCTTTGATTCCGGGATTTGCCAA
375 AAATGCCTTAAAAAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTGGATTCCAGGATTTGCAAA
* ** * * * * *
76682966 TTCTTGTCCTGTACATATCCATATTTTGACACTCATGCTTGATTCTGAGTAACATAAGCTCAAAT
440 TGCTTGTCCAATACATATCCATA-TCTAACACTCATGCTTGAGTCCGAGTAACATAAGCTCAAAG
* * * * * *
76683031 CAAGCTTTAGTCATTGCTTACCGGTAGCCTCAAAATCTTATTATAGGTGGTTTAAGGTGTGAAGA
504 CAAGCTTTAGCCATTGCCTAACGGTAACCCCAAAATCTTA-TATAGGTGATTTAAGGTGTGAAGA
* *
76683096 GGCTCCAATTGCTTTAAAAAC
568 GGATCCAATTGCCTTAAAAAC
* * ** **
76683117 CTCCTTTTAGTAGTTAAGCCAAACAAGGCTTTGATTATGGGATTCACAAATGCTTGTCCGATACA
1 CTCCTTTTAGTAGTTAAGCTAGACAAGGCTTTGATTACAGGATTTGCAAATGCTTGTCCGATACA
* *
76683182 TATCCGTATCTGACACTCATGTTTGAGCCTGAGTAACATAAGCTCAAATCGAGCTTTAGCCATCA
66 TATCCGTATCTGACACTCATGCTTGAGCCTGAGTAACATAAGCTCAAATCGAGCTTTAGCCATCG
**
76683247 GCTAACAGTAGCCCCAGAATCTTAT
131 GCTAATGGTAGCCCCAGAATCTTAT
76683272 CATAGGTGGT
Statistics
Matches: 637, Mismatches: 96, Indels: 43
0.82 0.12 0.06
Matches are distributed among these distances:
589 73 0.11
590 6 0.01
593 1 0.00
594 1 0.00
595 1 0.00
597 74 0.12
598 243 0.38
599 126 0.20
600 112 0.18
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.31
Consensus pattern (588 bp):
CTCCTTTTAGTAGTTAAGCTAGACAAGGCTTTGATTACAGGATTTGCAAATGCTTGTCCGATACA
TATCCGTATCTGACACTCATGCTTGAGCCTGAGTAACATAAGCTCAAATCGAGCTTTAGCCATCG
GCTAATGGTAGCCCCAGAATCTTATTTGAAGTGTGAAGAGGCTCCAAATGCCTTACAAAGCTCCT
TTTAGTAGTTAAGCCAAACAAGGCTTCAATTGCAGGATTTGCAAATGCTTGTCCAATACATATCC
ATATCTGACACTCATGCTTGAGTCAGAGTAACATAAGCTAAAGTCAAGCTTTAGCCATCGCCTAA
TGGTAACCCAAGAATCTTATGCAGGTGGTTTAAGGTGTGAAGAGGCTCCAAATGCCTTAAAAAGC
TCCTTTTAGTAGTTAAGCCAGACAAGGCTTGGATTCCAGGATTTGCAAATGCTTGTCCAATACAT
ATCCATATCTAACACTCATGCTTGAGTCCGAGTAACATAAGCTCAAAGCAAGCTTTAGCCATTGC
CTAACGGTAACCCCAAAATCTTATATAGGTGATTTAAGGTGTGAAGAGGATCCAATTGCCTTAAA
AAC
Found at i:76690620 original size:22 final size:22
Alignment explanation
Indices: 76690575--76690617 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
76690565 AAAATGTTAT
76690575 AAAATAATTTTTAAATTATTTA
1 AAAATAATTTTTAAATTATTTA
*
76690597 AAAATTATTATTTAAATTATT
1 AAAATAATT-TTTAAATTATT
76690618 AAATTATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
AAAATAATTTTTAAATTATTTA
Found at i:76693226 original size:25 final size:26
Alignment explanation
Indices: 76693192--76693243 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
76693182 AAATGTTGAT
76693192 TTCATAATG-TTGAGATTTGATAATG
1 TTCATAATGTTTGAGATTTGATAATG
76693217 TTCATAATGTTTGAGATTTGATAATG
1 TTCATAATGTTTGAGATTTGATAATG
76693243 T
1 T
76693244 GATCAATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 9 0.35
26 17 0.65
ACGTcount: A:0.31, C:0.04, G:0.19, T:0.46
Consensus pattern (26 bp):
TTCATAATGTTTGAGATTTGATAATG
Found at i:76698285 original size:22 final size:20
Alignment explanation
Indices: 76698238--76698286 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
76698228 TACTATTTTG
*
76698238 TTATT-TAATTATGTGTATT
1 TTATTATAATTAGGTGTATT
76698257 TTA-TATAATGTAGGTGTATAT
1 TTATTATAAT-TAGGTGTAT-T
76698278 TTATTATAA
1 TTATTATAA
76698287 AATGTTAAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 1 0.04
19 7 0.28
20 8 0.32
21 4 0.16
22 5 0.20
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (20 bp):
TTATTATAATTAGGTGTATT
Found at i:76703227 original size:22 final size:21
Alignment explanation
Indices: 76703176--76703229 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
76703166 TATCCTCGAT
*
76703176 AAAGTGA-AAAAAGTGAAATA
1 AAAGTGATAAAAAATGAAATA
*
76703196 AAA-TAAATAAATAAATGAAATA
1 AAAGT-GATAAA-AAATGAAATA
76703218 AAAGTGATAAAA
1 AAAGTGATAAAA
76703230 GGGGGAGAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 7
0.73 0.08 0.19
Matches are distributed among these distances:
19 1 0.04
20 4 0.15
21 4 0.15
22 17 0.63
23 1 0.04
ACGTcount: A:0.69, C:0.00, G:0.13, T:0.19
Consensus pattern (21 bp):
AAAGTGATAAAAAATGAAATA
Found at i:76713678 original size:104 final size:104
Alignment explanation
Indices: 76713498--76713753 Score: 467
Period size: 104 Copynumber: 2.5 Consensus size: 104
76713488 ATGTTGCCTT
76713498 AGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAA
1 AGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAA
76713563 AGGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTA
66 AGGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTA
76713602 AGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAA
1 AGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAA
76713667 AGGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTA
66 AGGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTA
* * ** *
76713706 AGTGATGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCA
76713754 ATAACGGTTA
Statistics
Matches: 147, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
104 147 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (104 bp):
AGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAA
AGGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTA
Found at i:76716400 original size:104 final size:103
Alignment explanation
Indices: 76716136--76716401 Score: 419
Period size: 103 Copynumber: 2.6 Consensus size: 103
76716126 TAGCCGTTAT
*
76716136 TGGTGGATCCCGCACTTAGCACCA-CCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 TGGTGGATCACGCACTTAGCACCACCCA-TGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
**
76716200 GAATCAGCACATAGCAACCCCCTTTTTATTTCAAAGATA
65 GAATCAGCACATAGCAACCCCCTTTACATTTCAAAGATA
*
76716239 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 TGGTGGATCA-CGCACTTAGCACCACCCATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
76716303 GAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
65 GAATCAGCACATAGCAACCCCCTTT-ACATTTCAAAGATA
* * **
76716343 TGGTGGATCACGCACATAGCACCACCCATAAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGATCACGCACTTAGCACCACCCATGAATCGGGGAATCAGCACTTAGCAACCCCT
76716402 TTTATATACA
Statistics
Matches: 150, Mismatches: 9, Indels: 7
0.90 0.05 0.04
Matches are distributed among these distances:
103 83 0.55
104 66 0.44
105 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.19
Consensus pattern (103 bp):
TGGTGGATCACGCACTTAGCACCACCCATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTACATTTCAAAGATA
Found at i:76716763 original size:29 final size:29
Alignment explanation
Indices: 76716730--76716793 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
76716720 TAATCCACCA
76716730 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
76716759 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
76716789 CCCAA
1 CCCAA
76716794 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:76716767 original size:30 final size:30
Alignment explanation
Indices: 76716737--76716793 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
76716727 CCACCCAACT
76716737 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
76716766 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
76716794 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:76719198 original size:15 final size:17
Alignment explanation
Indices: 76719170--76719203 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
76719160 TTCTTAGGGG
76719170 AAAAAGAAATGAAA-AA
1 AAAAAGAAATGAAAGAA
76719186 AAAAAGAAA-GAAAGAA
1 AAAAAGAAATGAAAGAA
76719202 AA
1 AA
76719204 GGAAGTGGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (17 bp):
AAAAAGAAATGAAAGAA
Found at i:76723140 original size:3 final size:3
Alignment explanation
Indices: 76723132--76723156 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
76723122 CATTAGTCTT
76723132 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
76723157 ATATCCTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:76724007 original size:12 final size:12
Alignment explanation
Indices: 76723990--76724014 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
76723980 CTTAGTTTTG
76723990 CGGAACGCCTTA
1 CGGAACGCCTTA
76724002 CGGAACGCCTTA
1 CGGAACGCCTTA
76724014 C
1 C
76724015 TCCTTACCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGAACGCCTTA
Found at i:76727296 original size:13 final size:14
Alignment explanation
Indices: 76727280--76727315 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
76727270 CAATCTCATA
76727280 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
76727293 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
76727306 TCTC-ATTTCA
1 TCTCAATTTCA
76727316 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:76727305 original size:18 final size:19
Alignment explanation
Indices: 76727267--76727307 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
76727257 TGGTTCATGT
76727267 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
76727286 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
76727304 TTTC
1 TTTC
76727308 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:76727968 original size:15 final size:15
Alignment explanation
Indices: 76727948--76727994 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
76727938 TATTATATAT
76727948 TTCAATCAATATAAA
1 TTCAATCAATATAAA
* * *
76727963 TTCAATCAAAATGAT
1 TTCAATCAATATAAA
76727978 TTCAATCAATATAAA
1 TTCAATCAATATAAA
76727993 TT
1 TT
76727995 TGATAAATTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (15 bp):
TTCAATCAATATAAA
Found at i:76728931 original size:23 final size:23
Alignment explanation
Indices: 76728917--76728959 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
76728907 TTCTGTTTCT
76728917 TTTC-TTCTTTTTATTCTTTTTG
1 TTTCTTTCTTTTTATTCTTTTTG
76728939 TTTCTTTCTTTTGT-TTCTTTT
1 TTTCTTTCTTTT-TATTCTTTT
76728960 ATATATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 4 0.21
23 14 0.74
24 1 0.05
ACGTcount: A:0.02, C:0.14, G:0.05, T:0.79
Consensus pattern (23 bp):
TTTCTTTCTTTTTATTCTTTTTG
Found at i:76728952 original size:13 final size:13
Alignment explanation
Indices: 76728934--76728958 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76728924 TTTTTATTCT
76728934 TTTTGTTTCTTTC
1 TTTTGTTTCTTTC
76728947 TTTTGTTTCTTT
1 TTTTGTTTCTTT
76728959 TATATATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.08, T:0.80
Consensus pattern (13 bp):
TTTTGTTTCTTTC
Found at i:76729634 original size:13 final size:13
Alignment explanation
Indices: 76729616--76729647 Score: 55
Period size: 13 Copynumber: 2.4 Consensus size: 13
76729606 CTCGATTAAC
76729616 TTAATAAATATTT
1 TTAATAAATATTT
76729629 TTAATAAATATTT
1 TTAATAAATATTT
76729642 TCTAAT
1 T-TAAT
76729648 CCATTTTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.78
14 4 0.22
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (13 bp):
TTAATAAATATTT
Found at i:76730699 original size:14 final size:14
Alignment explanation
Indices: 76730680--76730707 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
76730670 TTAAAAATGA
76730680 TGAAATCAATAGAT
1 TGAAATCAATAGAT
76730694 TGAAATCAATAGAT
1 TGAAATCAATAGAT
76730708 AAAAAAAGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.14, T:0.29
Consensus pattern (14 bp):
TGAAATCAATAGAT
Found at i:76733972 original size:5 final size:5
Alignment explanation
Indices: 76733962--76733996 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
76733952 AATAATTAAG
76733962 TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT
76733997 ATAAAAGAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:76734066 original size:31 final size:30
Alignment explanation
Indices: 76734031--76734091 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
76734021 GAAACAGAAT
*
76734031 GAAAGCAAACGAAAC-AGAGAAGAACAGGGGA
1 GAAAG-AAACGAAACAAGA-AAGAAAAGGGGA
* *
76734062 GAAAGAAAGGAAAGAAGAAAGAAAAGGGGA
1 GAAAGAAACGAAACAAGAAAGAAAAGGGGA
76734092 AATAAGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.59, C:0.07, G:0.34, T:0.00
Consensus pattern (30 bp):
GAAAGAAACGAAACAAGAAAGAAAAGGGGA
Found at i:76735666 original size:39 final size:39
Alignment explanation
Indices: 76735559--76735693 Score: 114
Period size: 39 Copynumber: 3.4 Consensus size: 39
76735549 GACCTCGAGT
* * *
76735559 CGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTCGGCTAG-TC
** * ** *
76735600 CGATGAGGTACCGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
*
76735638 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAACTATTACTTCG-GCTAGTC
*
76735677 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
76735694 CCATATTGGT
Statistics
Matches: 74, Mismatches: 17, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
38 18 0.24
39 36 0.49
40 4 0.05
41 14 0.19
42 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
Found at i:76739016 original size:22 final size:22
Alignment explanation
Indices: 76738988--76739109 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
76738978 TTCCACATCC
76738988 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
76739010 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
76739034 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
76739057 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
76739081 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
76739104 ATCACA
1 ATCACA
76739110 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Done.