Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 27 of 250
Found at i:7837707 original size:50 final size:51
Alignment explanation
Indices: 7837630--7837752 Score: 185
Period size: 50 Copynumber: 2.4 Consensus size: 51
7837620 GACCATGGCA
* *
7837630 ACAAGTGATAAGTAATAGCTTCGGCTACACTTAACTGATCAAGGACAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTAACTGATCAAGGACAAATG
* *
7837681 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTAACTGATCAAGGACAAATG
* *
7837731 ACAAGTGAAAAGTGGTAGCTTC
1 ACAAGTGATAAGTGATAGCTTC
7837753 AACTACCTGA
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
50 46 0.71
51 19 0.29
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTAACTGATCAAGGACAAATG
Found at i:7837772 original size:31 final size:31
Alignment explanation
Indices: 7837734--7837883 Score: 185
Period size: 31 Copynumber: 4.8 Consensus size: 31
7837724 ACAAATGACA
**
7837734 AGTGAAAAGTGGTAGCTTCAACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
7837765 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
7837796 AGTGAAAAGTGGTAGCTCCGGCTACCTGAT-
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * * *
7837826 AGATAAAAAAATGGTAACTCCGGCTACCTGATC
1 AG-T-GAAAAGTGGTAGCTTCGGCTACCTGATC
* *
7837859 AGTGAATAGTTGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
7837884 AAGTGACAAG
Statistics
Matches: 103, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
30 2 0.02
31 74 0.72
32 25 0.24
33 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:7841785 original size:46 final size:46
Alignment explanation
Indices: 7841738--7841960 Score: 286
Period size: 46 Copynumber: 4.8 Consensus size: 46
7841728 GCTCTCTGAT
* *
7841738 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
7841784 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** ** * * *
7841830 GGGAAATGAATAAAACCATGGTTGAAAGATACCATGGCAGCGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
7841876 ATGAAATATGTAAGACCATGGTTGAAAAATACCATGGCAACATGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
7841922 A-GAAAATGAGTAAGACCATAGTTGATAGACACTATGGCA
1 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
7841961 TCATATCAAA
Statistics
Matches: 151, Mismatches: 25, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
45 1 0.01
46 150 0.99
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:7842689 original size:21 final size:21
Alignment explanation
Indices: 7842663--7842713 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
7842653 ACTCATATGA
*
7842663 GTTTCAGTTAACCCTTTTGTG
1 GTTTCAGTTAACCCTTTTGGG
7842684 GTTTCAGTTAACCCTTTTGGG
1 GTTTCAGTTAACCCTTTTGGG
7842705 GTTTCAGTT
1 GTTTCAGTT
7842714 CAGCTCTGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.14, C:0.18, G:0.22, T:0.47
Consensus pattern (21 bp):
GTTTCAGTTAACCCTTTTGGG
Found at i:7842769 original size:21 final size:21
Alignment explanation
Indices: 7842744--7842807 Score: 82
Period size: 19 Copynumber: 3.2 Consensus size: 21
7842734 TAGCCTTCAG
7842744 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTTATGT
*
7842765 GCTTCAG-TTAGC-CTTCA-G-
1 GCTTCCGTTTAGCACTT-ATGT
7842783 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTTATGT
7842804 GCTT
1 GCTT
7842808 TAGCTTGATT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
18 6 0.17
19 10 0.28
20 10 0.28
21 10 0.28
ACGTcount: A:0.14, C:0.25, G:0.20, T:0.41
Consensus pattern (21 bp):
GCTTCCGTTTAGCACTTATGT
Found at i:7842772 original size:39 final size:39
Alignment explanation
Indices: 7842726--7842807 Score: 164
Period size: 39 Copynumber: 2.1 Consensus size: 39
7842716 GCTCTGATGA
7842726 GCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTATGT
7842765 GCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTATGT
7842804 GCTT
1 GCTT
7842808 TAGCTTGATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.15, C:0.26, G:0.21, T:0.39
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTATGT
Found at i:7846179 original size:50 final size:50
Alignment explanation
Indices: 7846124--7846224 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
7846114 TAAATATGCT
7846124 AAGTACATTCATAGGTTTAAAACATTAAACTCACCTCGCAAATAATTCAA
1 AAGTACATTCATAGGTTTAAAACATTAAACTCACCTCGCAAATAATTCAA
7846174 AAGTACATTCATAGGTTTAAAACATTAAACTCACCTCGCAAATAATTCAA
1 AAGTACATTCATAGGTTTAAAACATTAAACTCACCTCGCAAATAATTCAA
7846224 A
1 A
7846225 CACACATATA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.45, C:0.20, G:0.08, T:0.28
Consensus pattern (50 bp):
AAGTACATTCATAGGTTTAAAACATTAAACTCACCTCGCAAATAATTCAA
Found at i:7847140 original size:16 final size:16
Alignment explanation
Indices: 7847119--7847150 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
7847109 TGAAGAACAG
7847119 ACTTTGAAAACACTTA
1 ACTTTGAAAACACTTA
7847135 ACTTTGAAAACACTTA
1 ACTTTGAAAACACTTA
7847151 CATGCAAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.19, G:0.06, T:0.31
Consensus pattern (16 bp):
ACTTTGAAAACACTTA
Found at i:7862186 original size:21 final size:20
Alignment explanation
Indices: 7862162--7862202 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
7862152 GATTTTAGGG
7862162 TTTTATTTTCTTTTCCATTTC
1 TTTTATTTTCTTTT-CATTTC
*
7862183 TTTTCTTTTCTTTTCATTTC
1 TTTTATTTTCTTTTCATTTC
7862203 GAATTTAGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.07, C:0.20, G:0.00, T:0.73
Consensus pattern (20 bp):
TTTTATTTTCTTTTCATTTC
Found at i:7862192 original size:10 final size:10
Alignment explanation
Indices: 7862168--7862202 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
7862158 AGGGTTTTAT
7862168 TTTCTTTTCCA
1 TTTCTTTT-CA
*
7862179 TTTCTTTTCT
1 TTTCTTTTCA
7862189 TTTCTTTTCA
1 TTTCTTTTCA
7862199 TTTC
1 TTTC
7862203 GAATTTAGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 14 0.64
11 8 0.36
ACGTcount: A:0.06, C:0.23, G:0.00, T:0.71
Consensus pattern (10 bp):
TTTCTTTTCA
Found at i:7868222 original size:26 final size:26
Alignment explanation
Indices: 7868179--7868232 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
7868169 TATCATCCTT
*
7868179 ATTTTACTCTCAGCAAAAATTTGACG
1 ATTTTACCCTCAGCAAAAATTTGACG
* * *
7868205 ATTTTACCCTTAGTAAAATTTTGACG
1 ATTTTACCCTCAGCAAAAATTTGACG
7868231 AT
1 AT
7868233 ATTGCCCCTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (26 bp):
ATTTTACCCTCAGCAAAAATTTGACG
Found at i:7868246 original size:26 final size:26
Alignment explanation
Indices: 7868193--7868251 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 26
7868183 TACTCTCAGC
* * *
7868193 AAAAATTTGACGATTTTACCCTTAGT
1 AAAATTTTGACGATATTACCCCTAGT
* *
7868219 AAAATTTTGACGATATTGCCCCTGGT
1 AAAATTTTGACGATATTACCCCTAGT
7868245 AAAATTT
1 AAAATTT
7868252 CAAGAAAATA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (26 bp):
AAAATTTTGACGATATTACCCCTAGT
Found at i:7871499 original size:43 final size:43
Alignment explanation
Indices: 7871433--7871604 Score: 201
Period size: 43 Copynumber: 4.0 Consensus size: 43
7871423 AGCTCGTACA
*
7871433 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAATATCG
**
7871476 ATGCC-ACTGTCCCAGACAG-GGTCTTACACAAAATCAAATA-CG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAATCAAATATCG
* * *
7871518 ATGCCAACGTCCCAGATGTAGTCTTACACGTAAATCATAA-GTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGT-AATCA-AATATCG
*
7871562 ATGCCAACGTCCCAGACGTGGTCTTACACGATAA-CACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-TAATCAAATATCG
7871605 GATCCTATGT
Statistics
Matches: 108, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
41 1 0.01
42 27 0.25
43 44 0.41
44 35 0.32
45 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAATATCG
Found at i:7871585 original size:86 final size:85
Alignment explanation
Indices: 7871433--7871590 Score: 223
Period size: 86 Copynumber: 1.8 Consensus size: 85
7871423 AGCTCGTACA
* *
7871433 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGGGT
1 ATGCCAACGTCCCAGACGTAGTCTTACACGTAATCAAATATCGATGCCACTGTCCCAGACAGGGT
7871498 CTTACACAAAATCAAATACG
66 CTTACACAAAATCAAATACG
* *
7871518 ATGCCAACGTCCCAGATGTAGTCTTACACGTAAATCATAA-GTCGATGCCAAC-GTCCCAGAC-G
1 ATGCCAACGTCCCAGACGTAGTCTTACACGT-AATCA-AATATCGATGCC-ACTGTCCCAGACAG
7871580 TGGTCTTACAC
63 -GGTCTTACAC
7871591 GATAACACAT
Statistics
Matches: 65, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
85 29 0.45
86 32 0.49
87 4 0.06
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (85 bp):
ATGCCAACGTCCCAGACGTAGTCTTACACGTAATCAAATATCGATGCCACTGTCCCAGACAGGGT
CTTACACAAAATCAAATACG
Found at i:7874555 original size:28 final size:28
Alignment explanation
Indices: 7874514--7874567 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
7874504 ATGTCGTTGA
* *
7874514 ATACTCAATGTCTCGCACACTAAGTGCC
1 ATACTCAATATCTCACACACTAAGTGCC
*
7874542 ATACTCGATATCTCACACACTAAGTG
1 ATACTCAATATCTCACACACTAAGTG
7874568 TCGTAATAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.31, C:0.30, G:0.13, T:0.26
Consensus pattern (28 bp):
ATACTCAATATCTCACACACTAAGTGCC
Found at i:7874626 original size:40 final size:39
Alignment explanation
Indices: 7874554--7874649 Score: 129
Period size: 40 Copynumber: 2.4 Consensus size: 39
7874544 ACTCGATATC
* *
7874554 TCACACACTAAGTGTCGTAATAGCCGAAGCTATCTCAAA
1 TCACACACTAAGTGCCATAATAGCCGAAGCTATCTCAAA
* **
7874593 TCACACACTAAGTGCCATATATAGCCGAAGCTATGTCGTA
1 TCACACACTAAGTGCCATA-ATAGCCGAAGCTATCTCAAA
*
7874633 TCGCACACTAAGTGCCA
1 TCACACACTAAGTGCCA
7874650 CAAATAACCG
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
39 17 0.34
40 33 0.66
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (39 bp):
TCACACACTAAGTGCCATAATAGCCGAAGCTATCTCAAA
Found at i:7886454 original size:13 final size:13
Alignment explanation
Indices: 7886422--7886446 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7886412 TGGACTTGTA
7886422 AATATTAAATAAT
1 AATATTAAATAAT
7886435 AATATTAAATAA
1 AATATTAAATAA
7886447 CTTTATTATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
AATATTAAATAAT
Found at i:7887312 original size:21 final size:21
Alignment explanation
Indices: 7887288--7887329 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
7887278 TACACGAGTT
7887288 AGCTAAATTGAGTTAACATGA
1 AGCTAAATTGAGTTAACATGA
7887309 AGCTAAATTGAGTTAACATGA
1 AGCTAAATTGAGTTAACATGA
7887330 TCTCAAAGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.10, G:0.19, T:0.29
Consensus pattern (21 bp):
AGCTAAATTGAGTTAACATGA
Found at i:7896951 original size:300 final size:299
Alignment explanation
Indices: 7896409--7896982 Score: 796
Period size: 300 Copynumber: 1.9 Consensus size: 299
7896399 ACCTTTAGGG
* *
7896409 TATTGACTATGTTGGAACCACCTTGTTGACCAATGCTATGACTTTCTCATGCAGTTTGAGTTCGT
1 TATTGACTATGTTGGAACCACCTGGTTGACCAATGCCATGACTTTCTCATGCAGTTTGAGTTCGT
* * * * * *
7896474 ACAGTTGAAACATAGAAATTACTGCCAAAAGATAGTATTTTCTTTTGCATTTAGAGCCTTCTTCG
66 ACAGTTGAAACATAGAAAGTACTACCAAAAGATAGTATTTTCTCTTCCATTTAAAGCCTTCTTCA
** * * *
7896539 TGCTCATGAATTTCTCTATACAAATAAGAATGTATAAACCAATCTTGTCATCGCACTGTATGACA
131 TGCTCACAAATTTCTATATACAAATAAGAATGTATAAACCAAGCTTGT-ATCGCACTGTAAGACA
* * * *
7896604 ATTATTGTTTTTCTATTTGAAGTTGTGTTTCAATAGTCTTTAACTGTTTATTCCAT-AGGTGTTC
195 ATTATTGTTTTCCTAGTTGAAATTGTGTCTCAATAGTCTTTAACTGTTTATTCC-TCAGGTGTTC
7896668 TACCACTGCCAACATCACAGCATTGTACCGCATTTATATTA
259 TACCACTGCCAACATCACAGCATTGTACCGCATTTATATTA
* *
7896709 TATTGACTATGTTGGAACCACCTGGTT-AGCCAATGCCATGACTTTTTCATGCAGTTTGTGTTCG
1 TATTGACTATGTTGGAACCACCTGGTTGA-CCAATGCCATGACTTTCTCATGCAGTTTGAGTTCG
* * *
7896773 TACAGTTGAAACTTAGAAAGTGCTACCCAAAGATAGTATTTTCTCTTCCATTTAAAGCCTTCTTC
65 TACAGTTGAAACATAGAAAGTACTACCAAAAGATAGTATTTTCTCTTCCATTTAAAGCCTTCTTC
* * *
7896838 ATGCTCACAAATTTCTATATACAAATTAGAATGTTTAACCCAAGCTTGT-TGCGGCACTGTACAG
130 ATGCTCACAAATTTCTATATACAAATAAGAATGTATAAACCAAGCTTGTAT-C-GCACTGTA-AG
* * *
7896902 -CAATTATTGTTTTCCTCGTTGAAATTGTGTCTCAGTAGTCTTTAACTGTTTATTCCTCTGGTGT
192 ACAATTATTGTTTTCCTAGTTGAAATTGTGTCTCAATAGTCTTTAACTGTTTATTCCTCAGGTGT
**
7896966 TCTACTGCTGCCAACAT
257 TCTACCACTGCCAACAT
7896983 TGCAGCACTG
Statistics
Matches: 239, Mismatches: 30, Indels: 10
0.86 0.11 0.04
Matches are distributed among these distances:
298 1 0.00
299 3 0.01
300 234 0.98
301 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.38
Consensus pattern (299 bp):
TATTGACTATGTTGGAACCACCTGGTTGACCAATGCCATGACTTTCTCATGCAGTTTGAGTTCGT
ACAGTTGAAACATAGAAAGTACTACCAAAAGATAGTATTTTCTCTTCCATTTAAAGCCTTCTTCA
TGCTCACAAATTTCTATATACAAATAAGAATGTATAAACCAAGCTTGTATCGCACTGTAAGACAA
TTATTGTTTTCCTAGTTGAAATTGTGTCTCAATAGTCTTTAACTGTTTATTCCTCAGGTGTTCTA
CCACTGCCAACATCACAGCATTGTACCGCATTTATATTA
Found at i:7918851 original size:25 final size:25
Alignment explanation
Indices: 7918823--7918871 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
7918813 GTATGGAAAT
*
7918823 AAGGAATATTTCATTAATTATGATG
1 AAGGAATATTTCATCAATTATGATG
*
7918848 AAGGAATATTTTATCAATTATGAT
1 AAGGAATATTTCATCAATTATGAT
7918872 AAAAATTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.41, C:0.04, G:0.14, T:0.41
Consensus pattern (25 bp):
AAGGAATATTTCATCAATTATGATG
Found at i:7921766 original size:13 final size:13
Alignment explanation
Indices: 7921748--7921772 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7921738 AAATGGATAC
7921748 AAAAATAATACAG
1 AAAAATAATACAG
7921761 AAAAATAATACA
1 AAAAATAATACA
7921773 TGGGAATTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.08, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAATAATACAG
Found at i:7937794 original size:10 final size:10
Alignment explanation
Indices: 7937779--7937840 Score: 74
Period size: 10 Copynumber: 6.1 Consensus size: 10
7937769 TAATTCTAGG
7937779 ATTTAT-TTT
1 ATTTATCTTT
7937788 CATTTATCTTT
1 -ATTTATCTTT
7937799 ATTTATCTTT
1 ATTTATCTTT
*
7937809 AATTATCTTT
1 ATTTATCTTT
7937819 ATTTAT-TTGT
1 ATTTATCTT-T
7937829 ATTTATCATTT
1 ATTTATC-TTT
7937840 A
1 A
7937841 GAATTTCATT
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
9 2 0.04
10 37 0.80
11 5 0.11
12 2 0.04
ACGTcount: A:0.24, C:0.08, G:0.02, T:0.66
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:7942430 original size:24 final size:24
Alignment explanation
Indices: 7942343--7942451 Score: 155
Period size: 24 Copynumber: 4.5 Consensus size: 24
7942333 CGGATTTAAG
*
7942343 TGGCACTATGTGTGCATATTTGTA
1 TGGCACTATGTGTGCGTATTTGTA
7942367 TGGCACTATGTGTGCGTATTTGTA
1 TGGCACTATGTGTGCGTATTTGTA
*
7942391 TGGCACTATGTGTGCGTATATGTA
1 TGGCACTATGTGTGCGTATTTGTA
* * * * *
7942415 AGGCACTATGTGTGCGGAATTATT
1 TGGCACTATGTGTGCGTATTTGTA
7942439 TGGCACTATGTGT
1 TGGCACTATGTGT
7942452 ACGGAGTTGA
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 76 1.00
ACGTcount: A:0.20, C:0.13, G:0.28, T:0.39
Consensus pattern (24 bp):
TGGCACTATGTGTGCGTATTTGTA
Found at i:7949095 original size:24 final size:24
Alignment explanation
Indices: 7949068--7949169 Score: 100
Period size: 24 Copynumber: 4.2 Consensus size: 24
7949058 TTACTAGATA
7949068 TGCGGATTTAAGTGGCACTATGTG
1 TGCGGATTTAAGTGGCACTATGTG
* **
7949092 TGCGTATTTGTGTGGCACTATGTG
1 TGCGGATTTAAGTGGCACTATGTG
*
7949116 TGCGTATATGTAA--GGCACTATGTG
1 TGCGGAT-T-TAAGTGGCACTATGTG
* **
7949140 TGCGGAATTATTTGGCACTATGTG
1 TGCGGATTTAAGTGGCACTATGTG
*
7949164 TACGGA
1 TGCGGA
7949170 GTTGAATCGT
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
22 2 0.03
23 1 0.02
24 60 0.92
25 1 0.02
26 1 0.02
ACGTcount: A:0.21, C:0.13, G:0.31, T:0.35
Consensus pattern (24 bp):
TGCGGATTTAAGTGGCACTATGTG
Found at i:7950972 original size:3 final size:3
Alignment explanation
Indices: 7950964--7950998 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
7950954 GATTTAGTCC
7950964 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
7950999 CCTACTTATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:7955933 original size:18 final size:17
Alignment explanation
Indices: 7955900--7955938 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
7955890 TTGTATAAAT
7955900 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
7955918 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
7955935 TGTG
1 TGTG
7955939 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:7956195 original size:23 final size:23
Alignment explanation
Indices: 7956164--7956260 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
7956154 AGTGTTATTG
7956164 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
7956187 TTCAGTGGTAGCTT-GGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
7956209 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
7956231 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
7956254 ATCAGTG
1 ATCAGTG
7956261 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
21 12 0.17
22 16 0.23
23 41 0.59
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.31
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:7956229 original size:44 final size:45
Alignment explanation
Indices: 7956166--7956253 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 45
7956156 TGTTATTGAT
*
7956166 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTT-GGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
7956210 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
7956254 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
44 34 0.81
45 8 0.19
ACGTcount: A:0.19, C:0.23, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:7971020 original size:44 final size:43
Alignment explanation
Indices: 7970880--7971209 Score: 212
Period size: 44 Copynumber: 7.6 Consensus size: 43
7970870 TTATACAGGC
* * * *
7970880 CTTATCTCCCTGAGATTACAGGGGAACAGACCAAAGAATTTCAGAT
1 CTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAA-GT-A-AT
* * ** *
7970926 CTTATCTCCCTGAGGTTACAGCGGAGCAGATTGAAGCCAG-AGAT
1 CTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-AAGTA-AT
*
7970970 CTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAAT
1 CTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGA-AGTAAT
* * * * *
7971014 CCTATCTCCTTGAGATTACAATGGAGCGGATTAAAG--G--AT
1 CTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAAGTAAT
* * * * ** *
7971053 CTTATCTCTCTGA-AGTTACAGTAGAGAAGATCACATCAG--GT
1 CTTATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAGAAGTAAT
* * * *
7971094 CTTATTTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGAT
1 CTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAA-GT-A-AT
* * *
7971140 CTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACT-AT
1 CTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGA-AGTAAT
*
7971183 CCTATCTCCCTGA-AGTTACAGTGGAGC
1 CTTATCTCCCTGAGA-TTACAGTGGAGC
7971210 GGATTAAAAT
Statistics
Matches: 222, Mismatches: 48, Indels: 31
0.74 0.16 0.10
Matches are distributed among these distances:
38 1 0.00
39 26 0.12
41 30 0.14
42 2 0.01
43 25 0.11
44 71 0.32
45 1 0.00
46 64 0.29
47 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (43 bp):
CTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAAGTAAT
Found at i:7971274 original size:174 final size:170
Alignment explanation
Indices: 7970966--7971298 Score: 474
Period size: 174 Copynumber: 1.9 Consensus size: 170
7970956 TTGAAGCCAG
* * *
7970966 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATT
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACACTAATCCTATCTCCCTGAGATT
* *
7971031 ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCT
66 ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACATCAAGTCT
7971096 TATTTCCCTG-AGATTACAGTGGAACAGACCAAAGAATTTC
131 TATTTCCCTGAAGA-TACAGTGGAACAGACCAAAGAATTTC
*
7971136 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACT-ATCCTATCTCCCTGA-AGT
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACACTAATCCTATCTCCCTGAGA-T
* * * * *
7971199 TACAGTGGAGCGGATTAAAATAAAGGATTTTATCTCTCTGAGGTTACAGCAGAGTAGATCGCATC
65 TACAATGGAGCGGA-T----TAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACATC
*
7971264 AAGTCTTATTTCCCTGAAGATGCAGTGGAACAGAC
125 AAGTCTTATTTCCCTGAAGATACAGTGGAACAGAC
7971299 TGAAAACAAG
Statistics
Matches: 144, Mismatches: 12, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
168 1 0.01
169 28 0.19
170 43 0.30
174 69 0.48
175 3 0.02
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (170 bp):
AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACACTAATCCTATCTCCCTGAGATT
ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACATCAAGTCT
TATTTCCCTGAAGATACAGTGGAACAGACCAAAGAATTTC
Found at i:7973045 original size:3 final size:3
Alignment explanation
Indices: 7973037--7973062 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7973027 GATTTAGTCC
7973037 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
7973063 CCTACTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:7977456 original size:5 final size:5
Alignment explanation
Indices: 7977446--7977507 Score: 65
Period size: 5 Copynumber: 12.6 Consensus size: 5
7977436 GCAACCCAAT
* * * *
7977446 TTTTA TTTTA TTTTA TTTTA GTTTG TTTTA GTTTG TTTTA TTTTA --TTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
7977494 TTTTA TTATTA TTT
1 TTTTA TT-TTA TTT
7977508 ATTATTTTCA
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
3 3 0.07
5 38 0.83
6 5 0.11
ACGTcount: A:0.18, C:0.00, G:0.06, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:7977746 original size:15 final size:15
Alignment explanation
Indices: 7977728--7977757 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
7977718 GATGCTGATT
7977728 TGGTTGTTGCTGCCC
1 TGGTTGTTGCTGCCC
7977743 TGGTTGTTGCTGCCC
1 TGGTTGTTGCTGCCC
7977758 ATATAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.00, C:0.27, G:0.33, T:0.40
Consensus pattern (15 bp):
TGGTTGTTGCTGCCC
Found at i:7979122 original size:10 final size:10
Alignment explanation
Indices: 7979099--7979158 Score: 61
Period size: 10 Copynumber: 6.0 Consensus size: 10
7979089 TAATTTTAGG
7979099 ATTTAT-TTT
1 ATTTATCTTT
*
7979108 CATTTTTCTTT
1 -ATTTATCTTT
*
7979119 ATTTATATTT
1 ATTTATCTTT
*
7979129 AATTATCTTT
1 ATTTATCTTT
7979139 ATTTAT-TTGT
1 ATTTATCTT-T
7979149 ATTTATCTTT
1 ATTTATCTTT
7979159 TAGAATTTCA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
9 2 0.05
10 34 0.83
11 5 0.12
ACGTcount: A:0.22, C:0.07, G:0.02, T:0.70
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:7980662 original size:46 final size:44
Alignment explanation
Indices: 7980603--7980717 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
7980593 ACAGGACAGA
* *
7980603 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
7980649 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
7980693 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
7980718 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:7980698 original size:44 final size:45
Alignment explanation
Indices: 7980603--7980736 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
7980593 ACAGGACAGA
* *
7980603 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
7980649 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
7980693 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
7980737 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:7990407 original size:20 final size:20
Alignment explanation
Indices: 7990382--7990420 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
7990372 TTAACGGGAC
7990382 TGCTGATGTGGCAAGTTAAT
1 TGCTGATGTGGCAAGTTAAT
*
7990402 TGCTGATGTGGCCAGTTAA
1 TGCTGATGTGGCAAGTTAA
7990421 CTTGTCACCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.13, G:0.31, T:0.33
Consensus pattern (20 bp):
TGCTGATGTGGCAAGTTAAT
Found at i:7991566 original size:20 final size:20
Alignment explanation
Indices: 7991541--7991578 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7991531 CAATGTGGCA
7991541 AGTTAACTAGCCACATCAAC
1 AGTTAACTAGCCACATCAAC
*
7991561 AGTTAACTTGCCACATCA
1 AGTTAACTAGCCACATCA
7991579 GCGGTCCCGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.37, C:0.29, G:0.11, T:0.24
Consensus pattern (20 bp):
AGTTAACTAGCCACATCAAC
Found at i:7993578 original size:29 final size:24
Alignment explanation
Indices: 7993523--7993570 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
7993513 TATGCTGCAG
7993523 TATCCCTATAGGCAAATAAAATCA
1 TATCCCTATAGGCAAATAAAATCA
7993547 TATCCCTATAGGCAAATAAAATCA
1 TATCCCTATAGGCAAATAAAATCA
7993571 CATCATATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.46, C:0.21, G:0.08, T:0.25
Consensus pattern (24 bp):
TATCCCTATAGGCAAATAAAATCA
Found at i:7999598 original size:20 final size:20
Alignment explanation
Indices: 7999573--7999610 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7999563 GCAAAGTCGT
7999573 TTTAGGGTTTTAGTTAGTAG
1 TTTAGGGTTTTAGTTAGTAG
* *
7999593 TTTAGGTTTTTATTTAGT
1 TTTAGGGTTTTAGTTAGT
7999611 TTTAATTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.00, G:0.24, T:0.58
Consensus pattern (20 bp):
TTTAGGGTTTTAGTTAGTAG
Found at i:8004996 original size:45 final size:45
Alignment explanation
Indices: 8004932--8005022 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
8004922 ACTAGTAAGA
8004932 ACATGGATTTCTGTCCAATTAATATGTGAACCTAATTCATTAGGT
1 ACATGGATTTCTGTCCAATTAATATGTGAACCTAATTCATTAGGT
8004977 ACATGGATTTCTGTCCAATTAATATGTGAACCTAATTCATTAGGT
1 ACATGGATTTCTGTCCAATTAATATGTGAACCTAATTCATTAGGT
8005022 A
1 A
8005023 TTCACATGCA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.37
Consensus pattern (45 bp):
ACATGGATTTCTGTCCAATTAATATGTGAACCTAATTCATTAGGT
Found at i:8019717 original size:79 final size:81
Alignment explanation
Indices: 8019581--8019763 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
8019571 TCGAATGATG
* *
8019581 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
8019645 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
8019660 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
8019722 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
8019740 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
8019764 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:8019779 original size:40 final size:40
Alignment explanation
Indices: 8019582--8019765 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
8019572 CGAATGATGT
* * * *
8019582 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
8019622 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
8019662 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
8019700 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
8019741 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
8019766 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:8019787 original size:79 final size:79
Alignment explanation
Indices: 8019634--8019788 Score: 208
Period size: 79 Copynumber: 2.0 Consensus size: 79
8019624 GGACTAAGAT
* **
8019634 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
8019699 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
8019713 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
8019776 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
8019789 ATTCGAAGGT
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 41 0.61
80 24 0.36
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:8027778 original size:79 final size:81
Alignment explanation
Indices: 8027642--8027824 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
8027632 TCGAATGATG
* * *
8027642 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTACGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGACGTGACCAAATCCGGACTAAGATCCGAAGGCATT
8027706 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
8027721 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGA-GTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCGACGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
8027783 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
8027801 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
8027825 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.64
80 31 0.34
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCGACGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:8027840 original size:40 final size:40
Alignment explanation
Indices: 8027643--8027826 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
8027633 CGAATGATGT
* * * *
8027643 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTACGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACTATAA
* *
8027683 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
8027723 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
8027761 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
8027802 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
8027827 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 80 0.63
41 11 0.09
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:8027848 original size:79 final size:79
Alignment explanation
Indices: 8027695--8027849 Score: 208
Period size: 79 Copynumber: 2.0 Consensus size: 79
8027685 GGACTAAGAT
* **
8027695 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
8027760 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
8027774 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
8027837 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
8027850 ATTCTGAAGG
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 41 0.61
80 24 0.36
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:8030668 original size:22 final size:22
Alignment explanation
Indices: 8030640--8030682 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
8030630 TGTGAAAAAG
*
8030640 AACAAAT-ATAATGAGATTGTTC
1 AACAAATAAAAAT-AGATTGTTC
8030662 AACAAATAAAAATAGATTGTT
1 AACAAATAAAAATAGATTGTT
8030683 TTGAAATCGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.51, C:0.07, G:0.12, T:0.30
Consensus pattern (22 bp):
AACAAATAAAAATAGATTGTTC
Found at i:8039450 original size:23 final size:23
Alignment explanation
Indices: 8039424--8039469 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
8039414 TTTTTAAGTG
8039424 ATTAAAATATAATTTTATAATTT
1 ATTAAAATATAATTTTATAATTT
** * *
8039447 ATTAATTTCTAATTTTATCATTT
1 ATTAAAATATAATTTTATAATTT
8039470 TCGAATGAAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (23 bp):
ATTAAAATATAATTTTATAATTT
Found at i:8045166 original size:30 final size:29
Alignment explanation
Indices: 8045126--8045192 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 29
8045116 GATAATTAGG
*
8045126 TGACAAAAAAAGACAATTTTA-AATAGTTGA
1 TGACCAAAAAAGA-AA-TTTACAATAGTTGA
8045156 GTGACCAAAAAAGAAATTTACTAATAGTTGA
1 -TGACCAAAAAAGAAATTTAC-AATAGTTGA
8045187 TGACCA
1 TGACCA
8045193 TTTTGTAACT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
29 4 0.12
30 8 0.24
31 21 0.64
ACGTcount: A:0.49, C:0.10, G:0.15, T:0.25
Consensus pattern (29 bp):
TGACCAAAAAAGAAATTTACAATAGTTGA
Found at i:8047145 original size:9 final size:9
Alignment explanation
Indices: 8047105--8047313 Score: 59
Period size: 9 Copynumber: 22.2 Consensus size: 9
8047095 ATGAGATATA
8047105 ATAATTTTT
1 ATAATTTTT
* *
8047114 ACAAATTTT
1 ATAATTTTT
*
8047123 AT-ATTTCT
1 ATAATTTTT
8047131 -TAATTTTT
1 ATAATTTTT
8047139 ATAATTTTCT
1 ATAATTTT-T
*
8047149 -TACGA-CTTT
1 ATA--ATTTTT
*
8047158 ATAAAATTTT
1 AT-AATTTTT
*
8047168 ACAATTTTTT
1 ATAA-TTTTT
* *
8047178 GTTATATTTT
1 ATAAT-TTTT
*
8047188 ATAATTATT
1 ATAATTTTT
* *
8047197 ATAAAATGTT
1 AT-AATTTTT
*
8047207 ACAAATTTTT
1 A-TAATTTTT
8047217 ATAATTTTT
1 ATAATTTTT
8047226 ATAATTTTTT
1 ATAA-TTTTT
*
8047236 AATAACTTTT
1 -ATAATTTTT
*
8047246 AAATATTTTT
1 ATA-ATTTTT
* *
8047256 ATTAAAATTTA
1 A-T-AATTTTT
*
8047267 ATATTTTTTT
1 ATA-ATTTTT
*
8047277 ATAACTTTT
1 ATAATTTTT
**
8047286 ATTTTTTTT
1 ATAATTTTT
*
8047295 AT-TTTTTT
1 ATAATTTTT
*
8047303 ATTATTTTT
1 ATAATTTTT
8047312 AT
1 AT
8047314 CACATGTCAG
Statistics
Matches: 144, Mismatches: 37, Indels: 38
0.66 0.17 0.17
Matches are distributed among these distances:
7 1 0.01
8 17 0.12
9 60 0.42
10 54 0.38
11 11 0.08
12 1 0.01
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.61
Consensus pattern (9 bp):
ATAATTTTT
Found at i:8047199 original size:39 final size:38
Alignment explanation
Indices: 8047156--8047231 Score: 107
Period size: 39 Copynumber: 2.0 Consensus size: 38
8047146 TCTTACGACT
* * * *
8047156 TTATAAAATTTTACAATTTTTTGTTATATTTTATAATTA
1 TTATAAAATGTTACAAATTTTTATAAT-TTTTATAATTA
8047195 TTATAAAATGTTACAAATTTTTATAATTTTTATAATT
1 TTATAAAATGTTACAAATTTTTATAATTTTTATAATT
8047232 TTTTAATAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
38 10 0.30
39 23 0.70
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (38 bp):
TTATAAAATGTTACAAATTTTTATAATTTTTATAATTA
Found at i:8047234 original size:10 final size:10
Alignment explanation
Indices: 8047212--8047311 Score: 52
Period size: 10 Copynumber: 10.4 Consensus size: 10
8047202 ATGTTACAAA
8047212 TTTTTATAA-
1 TTTTTATAAT
8047221 TTTTTATAAT
1 TTTTTATAAT
8047231 TTTTTAATAA-
1 TTTTT-ATAAT
*
8047241 CTTTTA-AAT
1 TTTTTATAAT
*
8047250 ATTTTTATTAAA
1 -TTTTTA-TAAT
* * *
8047262 ATTTAATATT
1 TTTTTATAAT
8047272 TTTTTATAA-
1 TTTTTATAAT
*
8047281 CTTTTAT--T
1 TTTTTATAAT
*
8047289 TTTTT-TATT
1 TTTTTATAAT
*
8047298 TTTTTATTAT
1 TTTTTATAAT
8047308 TTTT
1 TTTT
8047312 ATCACATGTC
Statistics
Matches: 67, Mismatches: 14, Indels: 19
0.67 0.14 0.19
Matches are distributed among these distances:
7 1 0.01
8 6 0.09
9 22 0.33
10 28 0.42
11 8 0.12
12 2 0.03
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:8047235 original size:20 final size:20
Alignment explanation
Indices: 8047212--8047296 Score: 79
Period size: 20 Copynumber: 4.3 Consensus size: 20
8047202 ATGTTACAAA
*
8047212 TTTTTATAATTTTTATAATT
1 TTTTTATAACTTTTATAATT
* *
8047232 TTTTAATAACTTTTA-AATA
1 TTTTTATAACTTTTATAATT
**
8047251 TTTTTATTAAAATTTA-ATATT
1 TTTTTA-TAACTTTTATA-ATT
8047272 TTTTTATAACTTTTAT--TT
1 TTTTTATAACTTTTATAATT
8047290 TTTTTAT
1 TTTTTAT
8047297 TTTTTTATTA
Statistics
Matches: 53, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
18 9 0.17
19 8 0.15
20 28 0.53
21 8 0.15
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (20 bp):
TTTTTATAACTTTTATAATT
Found at i:8047245 original size:29 final size:29
Alignment explanation
Indices: 8047131--8047257 Score: 73
Period size: 29 Copynumber: 4.3 Consensus size: 29
8047121 TTATATTTCT
**
8047131 TAATTTTTATAATTTTCTT-ACGAC-TTTA
1 TAATTTTTATAATTTT-TTAATAACTTTTA
* * **
8047159 TAAAATTTTACAATTTTTTGTTATA-TTTTA
1 T-AATTTTTATAATTTTTTAATA-ACTTTTA
* ** * *
8047189 TAATTATTATAAAATGTTACA-AATTTTTA
1 TAATTTTTATAATTTTTTA-ATAACTTTTA
8047218 TAATTTTTATAATTTTTTAATAACTTTTA
1 TAATTTTTATAATTTTTTAATAACTTTTA
*
8047247 AATATTTTTAT
1 TA-ATTTTTAT
8047258 TAAAATTTAA
Statistics
Matches: 72, Mismatches: 19, Indels: 14
0.69 0.18 0.13
Matches are distributed among these distances:
28 5 0.07
29 53 0.74
30 14 0.19
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.57
Consensus pattern (29 bp):
TAATTTTTATAATTTTTTAATAACTTTTA
Found at i:8058820 original size:69 final size:69
Alignment explanation
Indices: 8058703--8059237 Score: 362
Period size: 69 Copynumber: 7.7 Consensus size: 69
8058693 ACAACATTCG
* ** * * * *
8058703 TGTCATATTAAGGCTCGCAAGTGAAGAGCCTCAGCCTCTAACACAGTTAGTTAGAGCAAAGCTCC
1 TGTCATATTAAGGCTCGCAGGCAAAGAGCCACAACCTCCAACACAGTTAGTAAGAGCAAAGCTCC
8058768 TAGT
66 TAGT
* * * * * * * * *
8058772 TGTCATATTAAGGTTCACAGTCGATGAGTCACAACCTCCAACACAGTTAGTGATACCAAAGCTCC
1 TGTCATATTAAGGCTCGCAGGCAAAGAGCCACAACCTCCAACACAGTTAGTAAGAGCAAAGCTCC
* *
8058837 CAGC
66 TAGT
* * * * * * *
8058841 TGTCATATTAAAGCTCGCAGGCAAAGAGTCACAGCCCCCCAGCATAGTTAGTAATAGCAAAGCTC
1 TGTCATATTAAGGCTCGCAGGCAAAGAGCCACA-ACCTCCAACACAGTTAGTAAGAGCAAAGCTC
*
8058906 CCA-T
65 CTAGT
* * ** * *
8058910 GTGTTATATTAAGGCTCGCAAGCAAAGAGCCGTAGCCTCCAACACAGTTAGCGAA-AGCAAAGCT
1 -TGTCATATTAAGGCTCGCAGGCAAAGAGCCACAACCTCCAACACAGTTAG-TAAGAGCAAAGCT
*
8058974 CCTAGC
64 CCTAGT
* ** * * * * * * * *
8058980 TATCATATTAAAACTTGTAGGTAAAAAGCCATAACC-CCAAGCATAGTTAGCAAGAGTAAAGCTC
1 TGTCATATTAAGGCTCGCAGGCAAAGAGCCACAACCTCCAA-CACAGTTAGTAAGAGCAAAGCT-
*
8059044 CCAAG-
64 CCTAGT
* * * * *
8059049 TGTCATATTAAGGCTCGCAGGCGAGGAGCCGCAGCCTCCAACATAGTTAGTAAGAGCAAAGCTCC
1 TGTCATATTAAGGCTCGCAGGCAAAGAGCCACAACCTCCAACACAGTTAGTAAGAGCAAAGCTCC
8059114 TAGT
66 TAGT
** * * * * * * * *
8059118 TGTCATATTAAGGCTCGCAGGTGAAGAGTCGCAGCCGCCAGCACAATTAGTGAA-AACGAAGCTC
1 TGTCATATTAAGGCTCGCAGGCAAAGAGCCACAACCTCCAACACAGTTAGT-AAGAGCAAAGCTC
* *
8059182 CCAAT
65 CTAGT
* * * * *
8059187 TGTTATATTAAAGCTCGC-GAGCAAAGAGCTACAGCCCCCAACACAGTTAGT
1 TGTCATATTAAGGCTCGCAG-GCAAAGAGCCACAACCTCCAACACAGTTAGT
8059238 GAGAATTAAA
Statistics
Matches: 363, Mismatches: 92, Indels: 22
0.76 0.19 0.05
Matches are distributed among these distances:
68 11 0.03
69 285 0.79
70 67 0.18
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.21
Consensus pattern (69 bp):
TGTCATATTAAGGCTCGCAGGCAAAGAGCCACAACCTCCAACACAGTTAGTAAGAGCAAAGCTCC
TAGT
Found at i:8059237 original size:138 final size:134
Alignment explanation
Indices: 8058806--8059237 Score: 418
Period size: 138 Copynumber: 3.1 Consensus size: 134
8058796 TGAGTCACAA
* * * *
8058806 CCTCCAACACAGTTAGTGATACCAAAGCTCCCAGCTGTCATATTAAAGCTCGCAGGCAAAGAGTC
1 CCTCCAACACAGTTAGT-AAAGCAAAGCTCCTAGCTGTCATATTAAAGCTCGCAGGTAAAGAGTC
* *
8058871 ACAGCCCCCCAGCATAGTTAGTAATAGCAAAGCTCCC-ATGTGTTATATTAAGGCTCGCAAGCAA
65 ACAG--CCCCAGCATAGTTAGTAA-AACGAAGCTCCCAAT-TGTTATATTAAGGCTCGC-AGCAA
*
8058935 AGAGCCGTAG
125 AGAGCCGCAG
* * * * * * *
8058945 CCTCCAACACAGTTAGCGAAAGCAAAGCTCCTAGCTATCATATTAAAACTTGTAGGTAAAAAGCC
1 CCTCCAACACAGTTAG-TAAAGCAAAGCTCCTAGCTGTCATATTAAAGCTCGCAGGTAAAGAGTC
* * * * * * * *
8059010 ATAACCCCAAGCATAGTTAGCAAGA-GTAAAGCTCCCAAGTGTCATATTAAGGCTCGCAGGCGAG
65 ACAGCCCC-AGCATAGTTAGTAAAACG--AAGCTCCCAATTGTTATATTAAGGCTCGCA-GCAAA
8059074 GAGCCGCAG
126 GAGCCGCAG
* * * *
8059083 CCTCCAACATAGTTAGTAAGAGCAAAGCTCCTAGTTGTCATATTAAGGCTCGCAGGTGAAGAGTC
1 CCTCCAACACAGTTAGTAA-AGCAAAGCTCCTAGCTGTCATATTAAAGCTCGCAGGTAAAGAGTC
* * * *
8059148 GCAGCCGCCAGCACAATTAGTGAAAACGAAGCTCCCAATTGTTATATTAAAGCTCGCGAGCAAAG
65 ACAGCC-CCAGCATAGTTAGT-AAAACGAAGCTCCCAATTGTTATATTAAGGCTCGC-AGCAAAG
**
8059213 AGCTACAG
127 AGCCGCAG
*
8059221 CCCCCAACACAGTTAGT
1 CCTCCAACACAGTTAGT
8059238 GAGAATTAAA
Statistics
Matches: 233, Mismatches: 49, Indels: 23
0.76 0.16 0.08
Matches are distributed among these distances:
137 7 0.03
138 163 0.70
139 62 0.27
140 1 0.00
ACGTcount: A:0.34, C:0.26, G:0.21, T:0.20
Consensus pattern (134 bp):
CCTCCAACACAGTTAGTAAAGCAAAGCTCCTAGCTGTCATATTAAAGCTCGCAGGTAAAGAGTCA
CAGCCCCAGCATAGTTAGTAAAACGAAGCTCCCAATTGTTATATTAAGGCTCGCAGCAAAGAGCC
GCAG
Found at i:8062466 original size:22 final size:22
Alignment explanation
Indices: 8062416--8062475 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
8062406 TTGTCATTCG
** *
8062416 TAGAGAATGCCAGTACTAGATA
1 TAGAGAATGTTAGTACTAGAGA
* *
8062438 TATAGAATGTTAGTACTAGGGA
1 TAGAGAATGTTAGTACTAGAGA
8062460 TAGAGAATGTTAGTAC
1 TAGAGAATGTTAGTAC
8062476 CGGAGGCAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (22 bp):
TAGAGAATGTTAGTACTAGAGA
Found at i:8065302 original size:18 final size:18
Alignment explanation
Indices: 8065262--8065315 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
8065252 TTTTAAAGCT
* *
8065262 TATAAAAATGATAAAAAA
1 TATAAAAATCATTAAAAA
*
8065280 TATAAAAAT-ATTAAAAT
1 TATAAAAATCATTAAAAA
*
8065297 TAATAATAATCATTAAAAA
1 T-ATAAAAATCATTAAAAA
8065316 CAATAAAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
17 7 0.23
18 16 0.53
19 7 0.23
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (18 bp):
TATAAAAATCATTAAAAA
Found at i:8066424 original size:39 final size:40
Alignment explanation
Indices: 8066367--8066451 Score: 118
Period size: 39 Copynumber: 2.1 Consensus size: 40
8066357 TTAATTACTC
* * *
8066367 ATTTTTACTAATTTATTGCATAAAAATT-TTGAACTGTTG
1 ATTTTTACTAATTCATTGCATAAAAATTATTAAACTGATG
* *
8066406 ATTTTTACTAATTCATTGCATATAAATTATTAAATTGATG
1 ATTTTTACTAATTCATTGCATAAAAATTATTAAACTGATG
8066446 ATTTTT
1 ATTTTT
8066452 TTTGGGTTAA
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 26 0.65
40 14 0.35
ACGTcount: A:0.34, C:0.07, G:0.08, T:0.51
Consensus pattern (40 bp):
ATTTTTACTAATTCATTGCATAAAAATTATTAAACTGATG
Found at i:8070204 original size:35 final size:35
Alignment explanation
Indices: 8070165--8070255 Score: 112
Period size: 35 Copynumber: 2.6 Consensus size: 35
8070155 ACTAATACTT
8070165 TGATTCACATGTTAAGCATGCTATT-TTTCTAATTA
1 TGATTCACATGTTAAGCATGCTATTATTT-TAATTA
* * * *
8070200 TGATTCACATGTTGAGCATACTATTATTTTGATTC
1 TGATTCACATGTTAAGCATGCTATTATTTTAATTA
* *
8070235 TGAATCCCATGTTAAGCATGC
1 TGATTCACATGTTAAGCATGC
8070256 CACTATGTTA
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
35 44 0.94
36 3 0.06
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.42
Consensus pattern (35 bp):
TGATTCACATGTTAAGCATGCTATTATTTTAATTA
Found at i:8071954 original size:10 final size:10
Alignment explanation
Indices: 8071939--8071971 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
8071929 GTATATAAAT
8071939 AATAATATAA
1 AATAATATAA
8071949 AATAATA-AA
1 AATAATATAA
8071958 AATATATATAA
1 AATA-ATATAA
8071969 AAT
1 AAT
8071972 GTATAATACA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 6 0.29
10 10 0.48
11 5 0.24
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (10 bp):
AATAATATAA
Found at i:8071956 original size:20 final size:20
Alignment explanation
Indices: 8071933--8071971 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
8071923 ATATATGTAT
8071933 ATAAATAATA-ATATAAAATA
1 ATAAA-AATATATATAAAATA
8071953 ATAAAAATATATATAAAAT
1 ATAAAAATATATATAAAAT
8071972 GTATAATACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (20 bp):
ATAAAAATATATATAAAATA
Found at i:8083618 original size:10 final size:10
Alignment explanation
Indices: 8083603--8083635 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
8083593 GTATATAAAT
8083603 AATAATATAA
1 AATAATATAA
8083613 AATAATA-AA
1 AATAATATAA
8083622 AATATATATAA
1 AATA-ATATAA
8083633 AAT
1 AAT
8083636 GTATAATACA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 6 0.29
10 10 0.48
11 5 0.24
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (10 bp):
AATAATATAA
Found at i:8083619 original size:16 final size:16
Alignment explanation
Indices: 8083600--8083683 Score: 54
Period size: 16 Copynumber: 5.3 Consensus size: 16
8083590 TATGTATATA
8083600 AATAATAATATAAAAT
1 AATAATAATATAAAAT
* *
8083616 AATAAAAATAT-ATAT
1 AATAATAATATAAAAT
*
8083631 AA-AAT-GTATAATACAT
1 AATAATAATATAA-A-AT
8083647 AA-AATAATATACGAAA-
1 AATAATAATATA--AAAT
8083663 AATAATAATATAGAAA-
1 AATAATAATATA-AAAT
8083679 AATAA
1 AATAA
8083684 AACAATTTTT
Statistics
Matches: 55, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
13 3 0.05
14 3 0.05
15 5 0.09
16 28 0.51
17 14 0.25
18 1 0.02
19 1 0.02
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (16 bp):
AATAATAATATAAAAT
Found at i:8083626 original size:28 final size:28
Alignment explanation
Indices: 8083595--8083650 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
8083585 TGATATATGT
8083595 ATATAAATAATAATATAAAATA-ATAAAA
1 ATATAAATAA-AATATAAAATACATAAAA
* * *
8083623 ATATATATAAAATGTATAATACATAAAA
1 ATATAAATAAAATATAAAATACATAAAA
8083651 TAATATACGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 9 0.38
28 15 0.62
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (28 bp):
ATATAAATAAAATATAAAATACATAAAA
Found at i:8083669 original size:17 final size:16
Alignment explanation
Indices: 8083649--8083683 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 16
8083639 TAATACATAA
8083649 AATAATATACGAAAAAT
1 AATAATATA-GAAAAAT
8083666 AATAATATAGAAAAAT
1 AATAATATAGAAAAAT
8083682 AA
1 AA
8083684 AACAATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.69, C:0.03, G:0.06, T:0.23
Consensus pattern (16 bp):
AATAATATAGAAAAAT
Found at i:8096365 original size:10 final size:10
Alignment explanation
Indices: 8096350--8096382 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
8096340 GTATATAAAT
8096350 AATAATATAA
1 AATAATATAA
8096360 AATAATA-AA
1 AATAATATAA
8096369 AATATATATAA
1 AATA-ATATAA
8096380 AAT
1 AAT
8096383 GTATAATACA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 6 0.29
10 10 0.48
11 5 0.24
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (10 bp):
AATAATATAA
Found at i:8096367 original size:20 final size:20
Alignment explanation
Indices: 8096344--8096382 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
8096334 ATATATGTAT
8096344 ATAAATAATA-ATATAAAATA
1 ATAAA-AATATATATAAAATA
8096364 ATAAAAATATATATAAAAT
1 ATAAAAATATATATAAAAT
8096383 GTATAATACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (20 bp):
ATAAAAATATATATAAAATA
Found at i:8096373 original size:28 final size:28
Alignment explanation
Indices: 8096342--8096397 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
8096332 TGATATATGT
8096342 ATATAAATAATAATATAAAATA-ATAAAA
1 ATATAAATAA-AATATAAAATACATAAAA
* * *
8096370 ATATATATAAAATGTATAATACATAAAA
1 ATATAAATAAAATATAAAATACATAAAA
8096398 TAATATATGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 9 0.38
28 15 0.62
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (28 bp):
ATATAAATAAAATATAAAATACATAAAA
Found at i:8099073 original size:6 final size:6
Alignment explanation
Indices: 8099062--8099091 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
8099052 TTATACAATG
8099062 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
8099092 ACACACAGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
TAAAAA
Found at i:8112073 original size:14 final size:14
Alignment explanation
Indices: 8112050--8112081 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
8112040 TCCAAATATG
8112050 AAAA-AAAAAAAGA
1 AAAAGAAAAAAAGA
8112063 AAAAGAAAAAAAGA
1 AAAAGAAAAAAAGA
8112077 AAAAG
1 AAAAG
8112082 GATTGAGCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (14 bp):
AAAAGAAAAAAAGA
Found at i:8114492 original size:10 final size:10
Alignment explanation
Indices: 8114479--8114512 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
8114469 AAAAATTACT
8114479 AAAAGTCATA
1 AAAAGTCATA
*
8114489 AAAAGTTATA
1 AAAAGTCATA
*
8114499 GAAAGTCATA
1 AAAAGTCATA
8114509 AAAA
1 AAAA
8114513 TATATAAATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.62, C:0.06, G:0.12, T:0.21
Consensus pattern (10 bp):
AAAAGTCATA
Found at i:8114518 original size:20 final size:18
Alignment explanation
Indices: 8114467--8114520 Score: 72
Period size: 20 Copynumber: 2.8 Consensus size: 18
8114457 ATTAAAATCG
8114467 ATAAAAATTACTAAAAGTC
1 ATAAAAATTA-TAAAAGTC
8114486 ATAAAAAGTTATAGAAAGTC
1 ATAAAAA-TTATA-AAAGTC
8114506 ATAAAAATATATAAA
1 ATAAAAAT-TATAAA
8114521 TATTATAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
19 12 0.38
20 20 0.62
ACGTcount: A:0.61, C:0.06, G:0.07, T:0.26
Consensus pattern (18 bp):
ATAAAAATTATAAAAGTC
Found at i:8114554 original size:21 final size:22
Alignment explanation
Indices: 8114517--8114557 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
8114507 TAAAAATATA
*
8114517 TAAATATTATAAAAAATATTTT
1 TAAACATTATAAAAAATATTTT
8114539 TAAACATTAT-AAAAATATT
1 TAAACATTATAAAAAATATT
8114558 AAATTGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (22 bp):
TAAACATTATAAAAAATATTTT
Found at i:8114578 original size:65 final size:65
Alignment explanation
Indices: 8114506--8114660 Score: 172
Period size: 65 Copynumber: 2.4 Consensus size: 65
8114496 ATAGAAAGTC
* * *
8114506 ATAAAAATATATAAATATTATAAAAAATATT-TTTAAACATTATAAAAATATTAAA-TTGAAAAA
1 ATAAAAATATA-AAATATTATAAAAAATATTATTGAAAAATGAT-AAAATATTAAATTTGAAAAA
*
8114569 TG
64 TA
* *
8114571 ATAAAAATATAGAATATTAT-AAAAATATTAAATTGAAAAATGATAAAATATTAAATTTTAAAAA
1 ATAAAAATATAAAATATTATAAAAAATATT--ATTGAAAAATGATAAAATATTAAATTTGAAAAA
8114635 TA
64 TA
* *
8114637 ATTAAAATTAAAAAATATTATAAA
1 A-TAAAAATATAAAATATTATAAA
8114661 TTATGAAAAA
Statistics
Matches: 75, Mismatches: 9, Indels: 9
0.81 0.10 0.10
Matches are distributed among these distances:
63 9 0.12
64 8 0.11
65 22 0.29
66 18 0.24
67 16 0.21
68 2 0.03
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (65 bp):
ATAAAAATATAAAATATTATAAAAAATATTATTGAAAAATGATAAAATATTAAATTTGAAAAATA
Found at i:8114579 original size:24 final size:24
Alignment explanation
Indices: 8114547--8114627 Score: 95
Period size: 23 Copynumber: 3.7 Consensus size: 24
8114537 TTTAAACATT
8114547 ATAAAAATATTAAATTGAAAAATG
1 ATAAAAATATTAAATTGAAAAATG
* *
8114571 ATAAAAATA-T--A--G-AATATT
1 ATAAAAATATTAAATTGAAAAATG
8114589 ATAAAAATATTAAATTGAAAAATG
1 ATAAAAATATTAAATTGAAAAATG
8114613 AT-AAAATATTAAATT
1 ATAAAAATATTAAATT
8114628 TTAAAAATAA
Statistics
Matches: 47, Mismatches: 4, Indels: 13
0.73 0.06 0.20
Matches are distributed among these distances:
18 13 0.28
19 2 0.04
21 2 0.04
23 15 0.32
24 15 0.32
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (24 bp):
ATAAAAATATTAAATTGAAAAATG
Found at i:8114595 original size:42 final size:41
Alignment explanation
Indices: 8114538--8114652 Score: 155
Period size: 42 Copynumber: 2.8 Consensus size: 41
8114528 AAAAATATTT
*
8114538 TTAAACATTATAAAAATATTAAATTGAAAAATGATAAAA-A
1 TTAAATATTATAAAAATATTAAATTGAAAAATGATAAAATA
8114578 TATAGAATATTATAAAAATATTAAATTGAAAAATGATAAAATA
1 T-TA-AATATTATAAAAATATTAAATTGAAAAATGATAAAATA
*
8114621 TTAAAT-TT-TAAAAATAATTAAAATTAAAAAAT
1 TTAAATATTATAAAAAT-ATT-AAATTGAAAAAT
8114653 ATTATAAATT
Statistics
Matches: 68, Mismatches: 2, Indels: 9
0.86 0.03 0.11
Matches are distributed among these distances:
39 7 0.10
40 6 0.09
41 16 0.24
42 37 0.54
43 2 0.03
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (41 bp):
TTAAATATTATAAAAATATTAAATTGAAAAATGATAAAATA
Found at i:8114634 original size:16 final size:16
Alignment explanation
Indices: 8114615--8114663 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 16
8114605 GAAAAATGAT
* *
8114615 AAAATATTAAATTTTA
1 AAAATATTAAAATTAA
8114631 AAAATAATTAAAATTAA
1 AAAAT-ATTAAAATTAA
8114648 AAAATATTATAAATTA
1 AAAATATTA-AAATTA
8114664 TGAAAAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 9 0.31
17 20 0.69
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
AAAATATTAAAATTAA
Found at i:8114646 original size:23 final size:23
Alignment explanation
Indices: 8114592--8114648 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
8114582 GAATATTATA
*
8114592 AAAATATTAAATTGAAAAATGAT
1 AAAATATTAAATTGAAAAATAAT
*
8114615 AAAATATTAAATTTTAAAAATAAT
1 AAAATATTAAA-TTGAAAAATAAT
*
8114639 TAAA-ATTAAA
1 AAAATATTAAA
8114649 AAATATTATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
23 17 0.57
24 13 0.43
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (23 bp):
AAAATATTAAATTGAAAAATAAT
Found at i:8114757 original size:20 final size:22
Alignment explanation
Indices: 8114734--8114774 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
8114724 TAAAAAACCA
8114734 ATAAAAT-TT-TAAAAAGTATT
1 ATAAAATGTTATAAAAAGTATT
*
8114754 ATAAAATGTTATAAGAAGTAT
1 ATAAAATGTTATAAAAAGTAT
8114775 AAAAATATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 2 0.11
22 9 0.50
ACGTcount: A:0.54, C:0.00, G:0.10, T:0.37
Consensus pattern (22 bp):
ATAAAATGTTATAAAAAGTATT
Found at i:8117599 original size:38 final size:38
Alignment explanation
Indices: 8117555--8117642 Score: 122
Period size: 40 Copynumber: 2.3 Consensus size: 38
8117545 ATCCAACCCA
*
8117555 ACACACCATGTGGGGACAAAATCGACCCACCCATCCCT
1 ACACACCATATGGGGACAAAATCGACCCACCCATCCCT
* * *
8117593 GCACACCATATATGGGGATAAAATCGACCCATCCATCCCT
1 ACACACC--ATATGGGGACAAAATCGACCCACCCATCCCT
8117633 ACACACCATA
1 ACACACCATA
8117643 AGGTACTGCA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
38 9 0.21
40 34 0.79
ACGTcount: A:0.34, C:0.36, G:0.14, T:0.16
Consensus pattern (38 bp):
ACACACCATATGGGGACAAAATCGACCCACCCATCCCT
Found at i:8117616 original size:40 final size:40
Alignment explanation
Indices: 8117565--8117642 Score: 129
Period size: 40 Copynumber: 1.9 Consensus size: 40
8117555 ACACACCATG
*
8117565 TGGGGACAAAATCGACCCACCCATCCCTGCACACCATATA
1 TGGGGACAAAATCGACCCACCCATCCCTACACACCATATA
* *
8117605 TGGGGATAAAATCGACCCATCCATCCCTACACACCATA
1 TGGGGACAAAATCGACCCACCCATCCCTACACACCATA
8117643 AGGTACTGCA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.33, C:0.36, G:0.14, T:0.17
Consensus pattern (40 bp):
TGGGGACAAAATCGACCCACCCATCCCTACACACCATATA
Found at i:8121161 original size:11 final size:11
Alignment explanation
Indices: 8121147--8121187 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
8121137 TGTTTTCTCC
8121147 CTATTTTGCTA
1 CTATTTTGCTA
*
8121158 CTATTTTACTA
1 CTATTTTGCTA
* *
8121169 TTATGTTGCTA
1 CTATTTTGCTA
8121180 CTATTTTG
1 CTATTTTG
8121188 TTATTATTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.56
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:8121438 original size:12 final size:11
Alignment explanation
Indices: 8121408--8121440 Score: 57
Period size: 11 Copynumber: 2.9 Consensus size: 11
8121398 TATATATTTT
8121408 AAAATAATATA
1 AAAATAATATA
8121419 AAAATAATATA
1 AAAATAATATA
8121430 AAAATTAATAT
1 AAAA-TAATAT
8121441 GGGCGGGTCG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 15 0.71
12 6 0.29
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (11 bp):
AAAATAATATA
Found at i:8124317 original size:15 final size:15
Alignment explanation
Indices: 8124297--8124330 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8124287 CTACGACCTC
*
8124297 TACCCCGGCCTCTAG
1 TACCCCGGCCACTAG
*
8124312 TACCCCGTCCACTAG
1 TACCCCGGCCACTAG
8124327 TACC
1 TACC
8124331 ACGTGTGCTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.47, G:0.15, T:0.21
Consensus pattern (15 bp):
TACCCCGGCCACTAG
Found at i:8128246 original size:59 final size:61
Alignment explanation
Indices: 8128169--8128285 Score: 148
Period size: 62 Copynumber: 1.9 Consensus size: 61
8128159 ATCACTTTAA
** * *
8128169 TATTAAATTAATATAATATCTA-T-CAAGATAAATATTAGATTAAATTTAATATTAAATCT
1 TATTAAAACAATAGAATATCTACTACAAGATAAACATTAGATTAAATTTAATATTAAATCT
* * *
8128228 TATTAAAACAATAGAATATTTATCTACAAGATAGACATTGGATTAAATTTAATATTAA
1 TATTAAAACAATAGAATATCTA-CTACAAGATAAACATTAGATTAAATTTAATATTAA
8128286 GATAATCATT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
59 18 0.38
61 1 0.02
62 29 0.60
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.39
Consensus pattern (61 bp):
TATTAAAACAATAGAATATCTACTACAAGATAAACATTAGATTAAATTTAATATTAAATCT
Found at i:8134655 original size:26 final size:26
Alignment explanation
Indices: 8134626--8134706 Score: 80
Period size: 26 Copynumber: 3.2 Consensus size: 26
8134616 TATCCGGAGC
8134626 TCCTGATTAAAGGCTCTTTGTAAGCT
1 TCCTGATTAAAGGCTCTTTGTAAGCT
* *
8134652 TCCTGATTAAAAGTTCTTTGTGAA-CT
1 TCCTGATTAAAGGCTCTTTGT-AAGCT
* *
8134678 TCCTAATT-ATGGCTCTTATG--AGCT
1 TCCTGATTAAAGGCTCTT-TGTAAGCT
8134702 TCCTG
1 TCCTG
8134707 TTATATAGCC
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
23 1 0.02
24 6 0.13
25 6 0.13
26 30 0.67
27 2 0.04
ACGTcount: A:0.22, C:0.20, G:0.17, T:0.41
Consensus pattern (26 bp):
TCCTGATTAAAGGCTCTTTGTAAGCT
Found at i:8138627 original size:22 final size:23
Alignment explanation
Indices: 8138602--8138647 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
8138592 CAACCAAATC
8138602 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
8138624 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
8138647 A
1 A
8138648 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:8138653 original size:23 final size:23
Alignment explanation
Indices: 8138609--8138653 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
8138599 ATCAATTCAA
*
8138609 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
8138632 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
8138654 CACATATCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:8140664 original size:18 final size:18
Alignment explanation
Indices: 8140641--8140675 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8140631 TTTGTGATAA
8140641 TTATAATTATAAGTTAAT
1 TTATAATTATAAGTTAAT
*
8140659 TTATAATTATTAGTTAA
1 TTATAATTATAAGTTAA
8140676 AAAAGCAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (18 bp):
TTATAATTATAAGTTAAT
Found at i:8141711 original size:14 final size:14
Alignment explanation
Indices: 8141692--8141721 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8141682 TTATATCGAG
8141692 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
8141706 ACCAATCCAATTCA
1 ACCAATCCAAATCA
8141720 AC
1 AC
8141722 ATATTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:8144680 original size:55 final size:55
Alignment explanation
Indices: 8144581--8144690 Score: 148
Period size: 55 Copynumber: 2.0 Consensus size: 55
8144571 GGATCACATG
* * * * *
8144581 GCCTCACACATGACCATGTTCCCCTGTTTTCCCCTGCATTTGCGTTTTGCACACA
1 GCCTCACACACGACCATGTTCCCCTATTTTCCCCTGCATCTGCGTATTGAACACA
* * *
8144636 GCCTCACACACGACCATGTTCCTCTATTTTCCCTTGTATCTGCGTATTGAACACA
1 GCCTCACACACGACCATGTTCCCCTATTTTCCCCTGCATCTGCGTATTGAACACA
8144691 ACATGGATCA
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
55 47 1.00
ACGTcount: A:0.19, C:0.35, G:0.14, T:0.33
Consensus pattern (55 bp):
GCCTCACACACGACCATGTTCCCCTATTTTCCCCTGCATCTGCGTATTGAACACA
Found at i:8147532 original size:25 final size:25
Alignment explanation
Indices: 8147498--8147548 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
8147488 CGATGTGAAT
8147498 GTTGTACTTTCTTAAGGTCAAGGAC
1 GTTGTACTTTCTTAAGGTCAAGGAC
8147523 GTTGTACTTTCTTAAGGTCAAGGAC
1 GTTGTACTTTCTTAAGGTCAAGGAC
8147548 G
1 G
8147549 AGGCCATGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.35
Consensus pattern (25 bp):
GTTGTACTTTCTTAAGGTCAAGGAC
Found at i:8152192 original size:26 final size:26
Alignment explanation
Indices: 8152161--8152267 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
8152151 TGAAATGCCC
8152161 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
8152187 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
8152213 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
8152239 ATCATGGAACATTTACCT-AACCATT
1 ATCATGGAACATTTACCTAAACCATT
8152264 ATCA
1 ATCA
8152268 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 10 0.13
26 66 0.87
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:8159232 original size:26 final size:26
Alignment explanation
Indices: 8159201--8159308 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 26
8159191 TGAAATGCCC
8159201 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
8159227 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
8159253 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
8159279 ATCATAGAACATTTACCT-AACTCATT
1 ATCATGGAACATTTACCTAAAC-CATT
8159305 ATCA
1 ATCA
8159309 ATTTTTACCA
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
25 2 0.03
26 73 0.97
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:8165188 original size:19 final size:19
Alignment explanation
Indices: 8165166--8165203 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
8165156 AAACTTTGTA
8165166 AAATAATTA-AAAATTAATT
1 AAATAATTATAAAA-TAATT
*
8165185 AAATCATTATAAAATAATT
1 AAATAATTATAAAATAATT
8165204 TAAAAATCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (19 bp):
AAATAATTATAAAATAATT
Found at i:8187822 original size:22 final size:22
Alignment explanation
Indices: 8187794--8187837 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
8187784 TGAAAGATTG
8187794 GAACACTGTTTCCATTTACTGA
1 GAACACTGTTTCCATTTACTGA
8187816 GAACACTGTTTCCATTTACTGA
1 GAACACTGTTTCCATTTACTGA
8187838 AAGTATGTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (22 bp):
GAACACTGTTTCCATTTACTGA
Found at i:8189699 original size:42 final size:42
Alignment explanation
Indices: 8189652--8189743 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
8189642 TGGCCCTTCG
* ** *
8189652 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
8189694 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
8189736 GCCCATTT
1 GCCCATTT
8189744 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:8189919 original size:25 final size:25
Alignment explanation
Indices: 8189891--8189960 Score: 72
Period size: 25 Copynumber: 2.8 Consensus size: 25
8189881 CTCATTTAAT
8189891 AACTGGGCCAAAGCCC-TTTCTGATA
1 AACTGGGCCAAAGCCCTTTTC-GATA
* * *
8189916 AACTGGGGCAGAGCCCTTTTCGGTA
1 AACTGGGCCAAAGCCCTTTTCGATA
*
8189941 AACTGGGGCAGAA-CCCTTTT
1 AACTGGGCCA-AAGCCCTTTT
8189961 AGAACTTCCT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
25 34 0.87
26 5 0.13
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (25 bp):
AACTGGGCCAAAGCCCTTTTCGATA
Found at i:8190995 original size:27 final size:27
Alignment explanation
Indices: 8190884--8191007 Score: 90
Period size: 27 Copynumber: 4.4 Consensus size: 27
8190874 ATCTACAAAC
** *
8190884 CAAGGGTATTTC-AGTAATTTTGTAAAC
1 CAAGGGTATTTCTA-TAATTTTAAAAAT
* *
8190911 CAATGGTATTCCTATAATTTTTTAAAAAAGT
1 CAAGGGTATTTCTATAA--TTTT-AAAAA-T
**
8190942 CAAGGGTATTTCTATAATTTTGCAAAT
1 CAAGGGTATTTCTATAATTTTAAAAAT
*
8190969 CAGGGGTATTT-TAGTAATTTTAAAAAT
1 CAAGGGTATTTCTA-TAATTTTAAAAAT
**
8190996 TGAGGGTATTTC
1 CAAGGGTATTTC
8191008 GGTAATTTCT
Statistics
Matches: 75, Mismatches: 15, Indels: 13
0.73 0.15 0.13
Matches are distributed among these distances:
26 2 0.03
27 43 0.57
28 4 0.05
29 8 0.11
30 3 0.04
31 15 0.20
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTCTATAATTTTAAAAAT
Found at i:8191109 original size:27 final size:27
Alignment explanation
Indices: 8191073--8191164 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
8191063 GTAATTTCAC
8191073 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGATAATTTTGTA
* *
8191100 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGATAATTTTGTA
* * *
8191127 AATCAAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAACGATAATTTTGTA
8191154 AATCGAGGGTA
1 AATCGAGGGTA
8191165 CTTTGGTAAT
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.02
27 53 0.96
28 1 0.02
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGATAATTTTGTA
Found at i:8191190 original size:54 final size:53
Alignment explanation
Indices: 8191054--8191191 Score: 136
Period size: 54 Copynumber: 2.6 Consensus size: 53
8191044 ATCCTACAGA
* * * *
8191054 GGTATTTTAGTAA-TTTCACAATCGAGGGTAAAACGATAATTTTGTAAACTGAG
1 GGTAATTTGGTAATTTTC-CAATCGAGGGTAAAACGATAATTCTATAAACTGAG
** ** *
8191107 GGTAAAATGGTAATTTTGTAAATCAAGGGTAAAACGATAATTCTATAAA-TCGAG
1 GGTAATTTGGTAATTTT-CCAATCGAGGGTAAAACGATAATTCTATAAACT-GAG
*
8191161 GGTACTTTGGTAATTTTCCAAGTCGAGGGTA
1 GGTAATTTGGTAATTTTCCAA-TCGAGGGTA
8191192 TTTCAGTAAT
Statistics
Matches: 66, Mismatches: 15, Indels: 7
0.75 0.17 0.08
Matches are distributed among these distances:
53 12 0.18
54 54 0.82
ACGTcount: A:0.36, C:0.09, G:0.22, T:0.33
Consensus pattern (53 bp):
GGTAATTTGGTAATTTTCCAATCGAGGGTAAAACGATAATTCTATAAACTGAG
Found at i:8193591 original size:25 final size:25
Alignment explanation
Indices: 8193563--8193632 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
8193553 CTCTTTTAAT
*
8193563 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAGAGCCCTTTTC-GATA
*
8193588 AACTGGGGCAGAGCCCTTTTCGGTA
1 AACTGGGGCAGAGCCCTTTTCGATA
*
8193613 AACTGGGGTAGAGCCCTTTT
1 AACTGGGGCAGAGCCCTTTT
8193633 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 37 0.90
26 4 0.10
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAGAGCCCTTTTCGATA
Found at i:8194582 original size:27 final size:26
Alignment explanation
Indices: 8194552--8194607 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 26
8194542 GTAAATCTAC
*
8194552 AAACCAAGGGTATTTCAATAATTTTGT
1 AAACCAAGGGTATTCCAATAATTTT-T
* *
8194579 AAACCAATGGTATTCCTATAATTTTT
1 AAACCAAGGGTATTCCAATAATTTTT
8194605 AAA
1 AAA
8194608 AAAAGTCAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 4 0.15
27 22 0.85
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (26 bp):
AAACCAAGGGTATTCCAATAATTTTT
Found at i:8194648 original size:27 final size:27
Alignment explanation
Indices: 8194610--8194661 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
8194600 TTTTTAAAAA
8194610 AAGTCAAGGGTATTTAT-GTAATTTTGT
1 AAGTCAAGGGTATTT-TGGTAATTTTGT
*
8194637 AAGTCAGGGGTATTTTGGTAATTTT
1 AAGTCAAGGGTATTTTGGTAATTTT
8194662 AAAAATTGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 1 0.04
27 22 0.96
ACGTcount: A:0.27, C:0.04, G:0.25, T:0.44
Consensus pattern (27 bp):
AAGTCAAGGGTATTTTGGTAATTTTGT
Found at i:8194818 original size:27 final size:27
Alignment explanation
Indices: 8194749--8194835 Score: 104
Period size: 27 Copynumber: 3.3 Consensus size: 27
8194739 TTTCACAATT
8194749 GAGGGTAAAATGGTAATTTTGTAAA-C
1 GAGGGTAAAATGGTAATTTTGTAAATC
* *
8194775 TAAGGTAAAATGGTAATTTTGTAAATC
1 GAGGGTAAAATGGTAATTTTGTAAATC
* * * * *
8194802 GAGGGTAAAACGATAATTCTATAAATT
1 GAGGGTAAAATGGTAATTTTGTAAATC
8194829 GAGGGTA
1 GAGGGTA
8194836 CTTTGGTAAT
Statistics
Matches: 51, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
26 23 0.45
27 28 0.55
ACGTcount: A:0.40, C:0.05, G:0.24, T:0.31
Consensus pattern (27 bp):
GAGGGTAAAATGGTAATTTTGTAAATC
Found at i:8200889 original size:13 final size:13
Alignment explanation
Indices: 8200869--8200900 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
8200859 TTTGAAAACG
8200869 GAAATGAAAATGA
1 GAAATGAAAATGA
*
8200882 GGAATGAAAATGA
1 GAAATGAAAATGA
8200895 GAAATG
1 GAAATG
8200901 GATTCATTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.56, C:0.00, G:0.28, T:0.16
Consensus pattern (13 bp):
GAAATGAAAATGA
Found at i:8202293 original size:13 final size:13
Alignment explanation
Indices: 8202275--8202299 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8202265 TCAGTTTGTA
8202275 TAAATTAAAATGT
1 TAAATTAAAATGT
8202288 TAAATTAAAATG
1 TAAATTAAAATG
8202300 AATTGGGATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (13 bp):
TAAATTAAAATGT
Found at i:8204905 original size:2 final size:2
Alignment explanation
Indices: 8204898--8204924 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8204888 TATTATGATA
8204898 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
8204925 TAAGTTGAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:8220349 original size:24 final size:24
Alignment explanation
Indices: 8220301--8220351 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
8220291 ATGTTTTACT
*
8220301 ACACGGACAGCCACACAGGCGGCC
1 ACACGGACAGCCACACAGGCAGCC
* **
8220325 ACACGGCCAGCCACATGGGCAGCC
1 ACACGGACAGCCACACAGGCAGCC
8220349 ACA
1 ACA
8220352 TGCCCGTGTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.29, C:0.41, G:0.27, T:0.02
Consensus pattern (24 bp):
ACACGGACAGCCACACAGGCAGCC
Found at i:8220353 original size:12 final size:12
Alignment explanation
Indices: 8220301--8220351 Score: 57
Period size: 12 Copynumber: 4.2 Consensus size: 12
8220291 ATGTTTTACT
*
8220301 ACACGGACAGCC
1 ACACGGGCAGCC
* *
8220313 ACACAGGCGGCC
1 ACACGGGCAGCC
*
8220325 ACACGGCCAGCC
1 ACACGGGCAGCC
*
8220337 ACATGGGCAGCC
1 ACACGGGCAGCC
8220349 ACA
1 ACA
8220352 TGCCCGTGTG
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.29, C:0.41, G:0.27, T:0.02
Consensus pattern (12 bp):
ACACGGGCAGCC
Found at i:8224036 original size:40 final size:40
Alignment explanation
Indices: 8223977--8224206 Score: 254
Period size: 40 Copynumber: 5.8 Consensus size: 40
8223967 TTGACACTAC
* * * *
8223977 TTTCAGTAAAATCAGTAGGTATGGCTCTATAGAGCATTCT
1 TTTCAGTAAATTCAGTAGGTATGGCTCAATAGAGCATACA
* * *
8224017 TTTTAGTAAATTCAGTAGGTATGGCGT-GATAGATCATAC-
1 TTTCAGTAAATTCAGTAGGTATGGC-TCAATAGAGCATACA
*
8224056 TTTCAGTAGAA-TCAGTAGGTATGGTTCAATA-ACGCATACA
1 TTTCAGTA-AATTCAGTAGGTATGGCTCAATAGA-GCATACA
* *
8224096 TTTCAGTAAATTTAGTAGGTATGGCTCAATAGCGCATACA
1 TTTCAGTAAATTCAGTAGGTATGGCTCAATAGAGCATACA
* * *
8224136 TTTCAGTATATTCAGTAGGTATTGCTCAACAGCA-CATACA
1 TTTCAGTAAATTCAGTAGGTATGGCTCAATAG-AGCATACA
* *
8224176 TTTCAATAGATTCAGTAGGTATGGCTCAATA
1 TTTCAGTAAATTCAGTAGGTATGGCTCAATA
8224207 ACGTATAAGT
Statistics
Matches: 161, Mismatches: 21, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 30 0.19
40 128 0.80
41 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33
Consensus pattern (40 bp):
TTTCAGTAAATTCAGTAGGTATGGCTCAATAGAGCATACA
Found at i:8224105 original size:79 final size:79
Alignment explanation
Indices: 8223974--8224206 Score: 263
Period size: 79 Copynumber: 2.9 Consensus size: 79
8223964 TCATTGACAC
* * * *
8223974 TACTTTCAGTAAAATCAGTAGGTATGGCTCTATAGA-GCATTCTTTTTAGTAAATTCAGTAGGTA
1 TACTTTCAGTAAAATCAGTAGGTATGGCTCAATA-ACGCATACATTTCAGTAAATTCAGTAGGTA
* *
8224038 TGGCGT-GATAGATCA
65 TGGC-TCAATAGAGCA
* * *
8224053 TACTTTCAGTAGAATCAGTAGGTATGGTTCAATAACGCATACATTTCAGTAAATTTAGTAGGTAT
1 TACTTTCAGTAAAATCAGTAGGTATGGCTCAATAACGCATACATTTCAGTAAATTCAGTAGGTAT
*
8224118 GGCTCAATAGCGCA
66 GGCTCAATAGAGCA
* * * * * * * *
8224132 TACATTTCAGTATATTCAGTAGGTATTGCTCAACAGCACATACATTTCAATAGATTCAGTAGGTA
1 TAC-TTTCAGTAAAATCAGTAGGTATGGCTCAATAACGCATACATTTCAGTAAATTCAGTAGGTA
8224197 TGGCTCAATA
65 TGGCTCAATA
8224207 ACGTATAAGT
Statistics
Matches: 131, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
78 2 0.02
79 68 0.52
80 61 0.47
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.33
Consensus pattern (79 bp):
TACTTTCAGTAAAATCAGTAGGTATGGCTCAATAACGCATACATTTCAGTAAATTCAGTAGGTAT
GGCTCAATAGAGCA
Found at i:8226689 original size:20 final size:20
Alignment explanation
Indices: 8226664--8226706 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
8226654 ATTTTGAATC
8226664 TGTTTGTGAGTTAATTCACT
1 TGTTTGTGAGTTAATTCACT
8226684 TGTTTGTGAGTTAATTCACT
1 TGTTTGTGAGTTAATTCACT
8226704 TGT
1 TGT
8226707 GACATTCATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.19, C:0.09, G:0.21, T:0.51
Consensus pattern (20 bp):
TGTTTGTGAGTTAATTCACT
Found at i:8230558 original size:3 final size:3
Alignment explanation
Indices: 8230550--8230578 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
8230540 CTAAATCCTC
8230550 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
8230579 GTTGGTTAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:8239813 original size:11 final size:11
Alignment explanation
Indices: 8239753--8239825 Score: 71
Period size: 11 Copynumber: 6.8 Consensus size: 11
8239743 TCCTAACACA
*
8239753 TATTAAACATAA
1 TATTAAA-ATAT
8239765 TATTAAAATAT
1 TATTAAAATAT
*
8239776 TA-T-AAATGT
1 TATTAAAATAT
8239785 TATT-AAATAT
1 TATTAAAATAT
* *
8239795 TATGAAAATAA
1 TATTAAAATAT
8239806 TATTAAAATAT
1 TATTAAAATAT
*
8239817 TATAAAAAT
1 TATTAAAAT
8239826 TTAGAAAGGA
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
9 7 0.14
10 10 0.20
11 27 0.53
12 7 0.14
ACGTcount: A:0.56, C:0.01, G:0.03, T:0.40
Consensus pattern (11 bp):
TATTAAAATAT
Found at i:8246299 original size:18 final size:18
Alignment explanation
Indices: 8246278--8246313 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
8246268 CAATTAAACC
8246278 ATTTGATTGATATATTTA
1 ATTTGATTGATATATTTA
* *
8246296 ATTTGATTTATTTATTTA
1 ATTTGATTGATATATTTA
8246314 TAAATAAATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.61
Consensus pattern (18 bp):
ATTTGATTGATATATTTA
Found at i:8246374 original size:18 final size:18
Alignment explanation
Indices: 8246353--8246387 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
8246343 TAATTTAAAA
8246353 TATAAATTTATTAATATG
1 TATAAATTTATTAATATG
8246371 TATAAATTTATTAATAT
1 TATAAATTTATTAATAT
8246388 ATGTAAAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (18 bp):
TATAAATTTATTAATATG
Found at i:8246394 original size:18 final size:18
Alignment explanation
Indices: 8246352--8246394 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
8246342 ATAATTTAAA
8246352 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
*
8246370 GTATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
*
8246388 ATGTAAA
1 ATATAAA
8246395 AACAACTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.47
Consensus pattern (18 bp):
ATATAAATTTATTAATAT
Done.