Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 29 of 250
Found at i:8545717 original size:16 final size:16
Alignment explanation
Indices: 8545696--8545726 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8545686 CCTTAATTTC
*
8545696 TCCCTTTTTTTTTCTT
1 TCCCTTTTTCTTTCTT
8545712 TCCCTTTTTCTTTCT
1 TCCCTTTTTCTTTCT
8545727 CCCTATGCGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (16 bp):
TCCCTTTTTCTTTCTT
Found at i:8545729 original size:14 final size:14
Alignment explanation
Indices: 8545692--8545730 Score: 51
Period size: 16 Copynumber: 2.6 Consensus size: 14
8545682 AAAACCTTAA
*
8545692 TTTCTCCCTTTTTT
1 TTTCTCCCTTTTTC
8545706 TTTCTTTCCCTTTTTC
1 TTTC--TCCCTTTTTC
8545722 TTTCTCCCT
1 TTTCTCCCT
8545731 ATGCGAATGC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 9 0.41
16 13 0.59
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTCTCCCTTTTTC
Found at i:8545806 original size:18 final size:17
Alignment explanation
Indices: 8545768--8545811 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
8545758 CCTTCATTTC
*
8545768 TTTCTTTTATTCTTTTAG
1 TTTC-TTTATTCTTTGAG
8545786 TTTCTTTATTCTTTGATG
1 TTTCTTTATTCTTTGA-G
*
8545804 TTTATTTA
1 TTTCTTTA
8545812 CTTTATTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 11 0.48
18 12 0.52
ACGTcount: A:0.14, C:0.09, G:0.07, T:0.70
Consensus pattern (17 bp):
TTTCTTTATTCTTTGAG
Found at i:8546114 original size:3 final size:3
Alignment explanation
Indices: 8546101--8546152 Score: 58
Period size: 3 Copynumber: 18.3 Consensus size: 3
8546091 AATTTACTTC
*
8546101 ATA AT- ATA ATA AT- ATA AT- ATCA ATT A-A ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA
8546143 ATA ATA ATA A
1 ATA ATA ATA A
8546153 CTTAATTAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
2 7 0.17
3 33 0.79
4 2 0.05
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:8550060 original size:17 final size:17
Alignment explanation
Indices: 8550038--8550074 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
8550028 CAGCTATCAA
8550038 TCCGCTGTTTCATTCTG
1 TCCGCTGTTTCATTCTG
8550055 TCCGCTGTTTCATTCTG
1 TCCGCTGTTTCATTCTG
8550072 TCC
1 TCC
8550075 TTTAAGGTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.05, C:0.32, G:0.16, T:0.46
Consensus pattern (17 bp):
TCCGCTGTTTCATTCTG
Found at i:8550363 original size:15 final size:15
Alignment explanation
Indices: 8550338--8550372 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
8550328 TGTCATATGC
8550338 AAATA-ACAAGTGAG
1 AAATATACAAGTGAG
8550352 AAATATACAAGTGAG
1 AAATATACAAGTGAG
8550367 AAATAT
1 AAATAT
8550373 GTGGGCCACT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 5 0.25
15 15 0.75
ACGTcount: A:0.57, C:0.06, G:0.17, T:0.20
Consensus pattern (15 bp):
AAATATACAAGTGAG
Found at i:8555327 original size:6 final size:6
Alignment explanation
Indices: 8555319--8555373 Score: 58
Period size: 6 Copynumber: 9.2 Consensus size: 6
8555309 TTCAGTTTCA
* * * *
8555319 ATTTTA ATTTTG ATTTTG ATTTTG ATTTCT- ATTTCG ATTTTG ATTATA
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTT-TG ATTTTG ATTTTG ATTTTG
8555367 ATTTTG A
1 ATTTTG A
8555374 AACACTCACT
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
6 39 0.98
7 1 0.03
ACGTcount: A:0.24, C:0.04, G:0.11, T:0.62
Consensus pattern (6 bp):
ATTTTG
Found at i:8555412 original size:18 final size:18
Alignment explanation
Indices: 8555391--8555460 Score: 61
Period size: 18 Copynumber: 3.9 Consensus size: 18
8555381 ACTGATTCTG
8555391 ATTTAGATTTCGATTTCA
1 ATTTAGATTTCGATTTCA
* * *
8555409 ATTTTGATTTCGATCTCT
1 ATTTAGATTTCGATTTCA
* * *
8555427 ATTTAGAATTAGAATTT-G
1 ATTTAGATTTCG-ATTTCA
*
8555445 ATTTTGATTTCGATTT
1 ATTTAGATTTCGATTT
8555461 AGGGTTACTT
Statistics
Matches: 40, Mismatches: 11, Indels: 3
0.74 0.20 0.06
Matches are distributed among these distances:
17 4 0.10
18 33 0.82
19 3 0.08
ACGTcount: A:0.26, C:0.09, G:0.13, T:0.53
Consensus pattern (18 bp):
ATTTAGATTTCGATTTCA
Found at i:8555649 original size:64 final size:64
Alignment explanation
Indices: 8555577--8555776 Score: 337
Period size: 64 Copynumber: 3.1 Consensus size: 64
8555567 ATGTTTATTG
*
8555577 TTTGTATCTGCCATTGTATGAATGCCATTATCAAACTGATATTTATTGTGTATATCTGTAATTA
1 TTTGTATCTGCCATTGTATGAATGCCATTATCAAACTGATGTTTATTGTGTATATCTGTAATTA
** *
8555641 TTTGTATCTGCCATTGTATGAATGCCATTATCAAACTGATGTTTATTGTGTATATCTGCCATTG
1 TTTGTATCTGCCATTGTATGAATGCCATTATCAAACTGATGTTTATTGTGTATATCTGTAATTA
* * *
8555705 TTTGTATCTGTCATTGTATGAATGCCATTATCAAACTGATGTTTATTGTGTATATCTGTTATTT
1 TTTGTATCTGCCATTGTATGAATGCCATTATCAAACTGATGTTTATTGTGTATATCTGTAATTA
8555769 TTTGTATC
1 TTTGTATC
8555777 CAAGCACCTA
Statistics
Matches: 128, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 128 1.00
ACGTcount: A:0.24, C:0.13, G:0.15, T:0.47
Consensus pattern (64 bp):
TTTGTATCTGCCATTGTATGAATGCCATTATCAAACTGATGTTTATTGTGTATATCTGTAATTA
Found at i:8555689 original size:32 final size:32
Alignment explanation
Indices: 8555653--8555753 Score: 77
Period size: 30 Copynumber: 3.2 Consensus size: 32
8555643 TGTATCTGCC
8555653 ATTGTATGAATGCCATTATCAAACTGATGTTT
1 ATTGTATGAATGCCATTATCAAACTGATGTTT
* * * * *
8555685 ATTGTGTAT-ATCTGCCATTGT----TTGTATCTGTC
1 A-T-TGTATGA-ATGCCATTATCAAACTG-ATGT-TT
8555717 ATTGTATGAATGCCATTATCAAACTGATGTTT
1 ATTGTATGAATGCCATTATCAAACTGATGTTT
8555749 ATTGT
1 ATTGT
8555754 GTATATCTGT
Statistics
Matches: 49, Mismatches: 10, Indels: 20
0.62 0.13 0.25
Matches are distributed among these distances:
30 15 0.31
31 5 0.10
32 9 0.18
33 5 0.10
34 15 0.31
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.45
Consensus pattern (32 bp):
ATTGTATGAATGCCATTATCAAACTGATGTTT
Found at i:8555693 original size:34 final size:34
Alignment explanation
Indices: 8555655--8555757 Score: 85
Period size: 34 Copynumber: 3.1 Consensus size: 34
8555645 TATCTGCCAT
8555655 TGTATGAATGCCATTATCAAACTGATGTTTATTG
1 TGTATGAATGCCATTATCAAACTGATGTTTATTG
* * * * *
8555689 TGTAT-ATCTGCCATTGT----TTGTATCTGTCA-T-
1 TGTATGA-ATGCCATTATCAAACTG-ATGT-TTATTG
8555719 TGTATGAATGCCATTATCAAACTGATGTTTATTG
1 TGTATGAATGCCATTATCAAACTGATGTTTATTG
8555753 TGTAT
1 TGTAT
8555758 ATCTGTTATT
Statistics
Matches: 49, Mismatches: 10, Indels: 20
0.62 0.13 0.25
Matches are distributed among these distances:
30 15 0.31
31 5 0.10
32 4 0.08
33 5 0.10
34 20 0.41
ACGTcount: A:0.25, C:0.13, G:0.17, T:0.45
Consensus pattern (34 bp):
TGTATGAATGCCATTATCAAACTGATGTTTATTG
Found at i:8556104 original size:15 final size:15
Alignment explanation
Indices: 8556084--8556112 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8556074 GAAGAAAACA
8556084 TGTCTGGTAGTGATG
1 TGTCTGGTAGTGATG
8556099 TGTCTGGTAGTGAT
1 TGTCTGGTAGTGAT
8556113 AGTGATGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.38, T:0.41
Consensus pattern (15 bp):
TGTCTGGTAGTGATG
Found at i:8557645 original size:17 final size:17
Alignment explanation
Indices: 8557618--8557657 Score: 71
Period size: 17 Copynumber: 2.3 Consensus size: 17
8557608 TAAGGTAAAG
8557618 ATTCTTTCTGATGCCTAT
1 ATTC-TTCTGATGCCTAT
8557636 ATTCTTCTGATGCCTAT
1 ATTCTTCTGATGCCTAT
8557653 ATTCT
1 ATTCT
8557658 AACTTCATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 18 0.82
18 4 0.18
ACGTcount: A:0.17, C:0.23, G:0.10, T:0.50
Consensus pattern (17 bp):
ATTCTTCTGATGCCTAT
Found at i:8557734 original size:40 final size:40
Alignment explanation
Indices: 8557690--8557796 Score: 169
Period size: 40 Copynumber: 2.7 Consensus size: 40
8557680 GCTATTTTAG
* *
8557690 TGAATGTTTTTTAATATGCATGCATTGATTGTTGGTGTGT
1 TGAATATTTTTTAATATGCATGCAGTGATTGTTGGTGTGT
*
8557730 TGAATATTTTTGAATATGCATGCAGTGATTGTTGGTGTGT
1 TGAATATTTTTTAATATGCATGCAGTGATTGTTGGTGTGT
**
8557770 TGCCTATTTTTTAATATGCATGCAGTG
1 TGAATATTTTTTAATATGCATGCAGTG
8557797 CGATCGTGTT
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.21, C:0.07, G:0.24, T:0.47
Consensus pattern (40 bp):
TGAATATTTTTTAATATGCATGCAGTGATTGTTGGTGTGT
Found at i:8560780 original size:6 final size:6
Alignment explanation
Indices: 8560769--8560796 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
8560759 AAATCTGCTG
8560769 AAAAAT AAAAAT AAAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAA
8560797 GTAGTTTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:8567792 original size:21 final size:21
Alignment explanation
Indices: 8567712--8567792 Score: 55
Period size: 21 Copynumber: 4.0 Consensus size: 21
8567702 AAGTTGGTGT
* * *
8567712 CCCAACTCAGCAACAGGCTAC
1 CCCAACTCATCAACAAGCTGC
8567733 CCCAA--C-TCAACAAGCTGC
1 CCCAACTCATCAACAAGCTGC
* * *
8567751 CCTAACTCAGT-TACTTA-CTGC
1 CCCAACTCA-TCAAC-AAGCTGC
8567772 CCCAACTCATCAACAAGCTGC
1 CCCAACTCATCAACAAGCTGC
8567793 TCTAAGACAA
Statistics
Matches: 44, Mismatches: 9, Indels: 14
0.66 0.13 0.21
Matches are distributed among these distances:
18 13 0.30
19 1 0.02
20 3 0.07
21 25 0.57
22 2 0.05
ACGTcount: A:0.31, C:0.41, G:0.11, T:0.17
Consensus pattern (21 bp):
CCCAACTCATCAACAAGCTGC
Found at i:8573115 original size:39 final size:39
Alignment explanation
Indices: 8573072--8573150 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
8573062 ATTGAATGTG
*
8573072 AAGCACGTAGGTTTTGGGAGTTATTTCTTCTTATTCGTT
1 AAGCACGTAGGTGTTGGGAGTTATTTCTTCTTATTCGTT
8573111 AAGCACGTAGGTGTTGGGAGTTATTTCTTCTTATTCGTT
1 AAGCACGTAGGTGTTGGGAGTTATTTCTTCTTATTCGTT
8573150 A
1 A
8573151 TTATTGTTGG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.19, C:0.13, G:0.24, T:0.44
Consensus pattern (39 bp):
AAGCACGTAGGTGTTGGGAGTTATTTCTTCTTATTCGTT
Found at i:8579469 original size:27 final size:27
Alignment explanation
Indices: 8579438--8579490 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
8579428 ACAAAAACAC
*
8579438 TTTTATACATTTAAGGCACCTATATAA
1 TTTTATACATTTAAGGAACCTATATAA
8579465 TTTTATACATTTAAGGAACCTATATA
1 TTTTATACATTTAAGGAACCTATATA
8579491 CATGCCACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.38, C:0.13, G:0.08, T:0.42
Consensus pattern (27 bp):
TTTTATACATTTAAGGAACCTATATAA
Found at i:8582272 original size:31 final size:31
Alignment explanation
Indices: 8582232--8582290 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
8582222 CATAAAAGAA
*
8582232 GATTTATAGATATGACAGACTCATACATACG
1 GATTCATAGATATGACAGACTCATACATACG
* *
8582263 GATTCATAGATATGGCAGACTTATACAT
1 GATTCATAGATATGACAGACTCATACAT
8582291 GCAAATTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (31 bp):
GATTCATAGATATGACAGACTCATACATACG
Found at i:8582312 original size:45 final size:45
Alignment explanation
Indices: 8582263--8582363 Score: 121
Period size: 45 Copynumber: 2.2 Consensus size: 45
8582253 CATACATACG
* * * *
8582263 GATTCATAGATATGGCAGACTTATACATGCAAATTTTTAGAAGAA
1 GATTCATAGATATGACAGACTCATACATGCAAATTTATAAAAGAA
* * *
8582308 GATTCATAGATATGATATACTCATACATGCAGATTTATAAAAGAA
1 GATTCATAGATATGACAGACTCATACATGCAAATTTATAAAAGAA
* *
8582353 TATTTATAGAT
1 GATTCATAGAT
8582364 GTGAACTGTG
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.42, C:0.10, G:0.15, T:0.34
Consensus pattern (45 bp):
GATTCATAGATATGACAGACTCATACATGCAAATTTATAAAAGAA
Found at i:8582317 original size:76 final size:76
Alignment explanation
Indices: 8582187--8582335 Score: 192
Period size: 76 Copynumber: 2.0 Consensus size: 76
8582177 TGTAGAAGAA
* * *
8582187 GATTCATAGATATGTAGGAGTCATACAGGCAAATTCATAAAAGAAGATTTATAGATATGACAGAC
1 GATTCATAGATATGCAGGACTCATACAGGCAAATTCATAAAAGAAGATTCATAGATATGACAGAC
8582252 TCATACATACG
66 TCATACATACG
* * ** * * *
8582263 GATTCATAGATATGGCA-GACTTATACATGCAAATTTTTAGAAGAAGATTCATAGATATGATATA
1 GATTCATAGATAT-GCAGGACTCATACAGGCAAATTCATAAAAGAAGATTCATAGATATGACAGA
8582327 CTCATACAT
65 CTCATACAT
8582336 GCAGATTTAT
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
76 60 0.97
77 2 0.03
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.30
Consensus pattern (76 bp):
GATTCATAGATATGCAGGACTCATACAGGCAAATTCATAAAAGAAGATTCATAGATATGACAGAC
TCATACATACG
Found at i:8586128 original size:15 final size:15
Alignment explanation
Indices: 8586108--8586141 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8586098 TAGTTAATCC
*
8586108 AAATGACATTACAAG
1 AAATGACATCACAAG
*
8586123 AAATGACATCACCAG
1 AAATGACATCACAAG
8586138 AAAT
1 AAAT
8586142 TCATAATGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.18, G:0.12, T:0.18
Consensus pattern (15 bp):
AAATGACATCACAAG
Found at i:8589305 original size:45 final size:45
Alignment explanation
Indices: 8589238--8589359 Score: 154
Period size: 45 Copynumber: 2.7 Consensus size: 45
8589228 ATGCGAACTC
* * * * * *
8589238 ATACATTCAAAATCGTATAAGAAGATTCATAGATATGGCGGACTT
1 ATACATACAAATTCATAGAAGAAGATTCATAGATATGGCGGAATA
** *
8589283 ATACATATGAATTCATAGAAGAAGCTTCATAGATATGGCGGAATA
1 ATACATACAAATTCATAGAAGAAGATTCATAGATATGGCGGAATA
*
8589328 ATACATGCAAATTCATAGAAGAAGATTCATAG
1 ATACATACAAATTCATAGAAGAAGATTCATAG
8589360 CCATGAAGGG
Statistics
Matches: 64, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 64 1.00
ACGTcount: A:0.43, C:0.12, G:0.18, T:0.27
Consensus pattern (45 bp):
ATACATACAAATTCATAGAAGAAGATTCATAGATATGGCGGAATA
Found at i:8589377 original size:45 final size:45
Alignment explanation
Indices: 8589238--8589405 Score: 129
Period size: 45 Copynumber: 3.7 Consensus size: 45
8589228 ATGCGAACTC
* * * * * ** * *
8589238 ATACATTCAAAATCGTATAAGAAGATTCATAGATATGGCGGACTT
1 ATACATGCAAATTCATAGAAGAAGATTCATAGACATGAAGGAATA
*** * * **
8589283 ATACATATGAATTCATAGAAGAAGCTTCATAGATATGGCGGAATA
1 ATACATGCAAATTCATAGAAGAAGATTCATAGACATGAAGGAATA
* ** *
8589328 ATACATGCAAATTCATAGAAGAAGATTCATAGCCATGAAGGGCTC
1 ATACATGCAAATTCATAGAAGAAGATTCATAGACATGAAGGAATA
* *
8589373 ATACATGCAAATTTATAAAAAGAAGATTCATAG
1 ATACATGCAAATTCAT-AGAAGAAGATTCATAG
8589406 TTGCGAATTG
Statistics
Matches: 100, Mismatches: 22, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
45 85 0.85
46 15 0.15
ACGTcount: A:0.43, C:0.13, G:0.18, T:0.26
Consensus pattern (45 bp):
ATACATGCAAATTCATAGAAGAAGATTCATAGACATGAAGGAATA
Found at i:8593386 original size:10 final size:10
Alignment explanation
Indices: 8593373--8593399 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
8593363 TGGATCGAAT
8593373 TGTAAATTCA
1 TGTAAATTCA
8593383 TGTAAATTCA
1 TGTAAATTCA
8593393 TGTAAAT
1 TGTAAAT
8593400 ATTCGTGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.41
Consensus pattern (10 bp):
TGTAAATTCA
Found at i:8597172 original size:44 final size:43
Alignment explanation
Indices: 8597124--8597314 Score: 118
Period size: 44 Copynumber: 4.2 Consensus size: 43
8597114 GGGCAGGTTG
8597124 AAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTA
1 AAGATTGAAGTCTTATC-TCCTGAGGTAGCAAGGAAGCAGACTA
* * * *
8597168 AAGATTGGAGGCAAATCTTATCTCCATGTATTGGTA--ATGG-AGCAGATTT
1 AAGATT----G-AAGTCTTATCTCC-TG-A--GGTAGCAAGGAAGCAGACTA
** * * * * ** *
8597217 AAGCCTCAAGCCTTATCTCTCTGAGGTAGCAAGAAAGCTGGTTC
1 AAGATTGAAGTCTTATCTC-CTGAGGTAGCAAGGAAGCAGACTA
* *
8597261 AATATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTG
1 AAGATTGAAGTCTTATC-TCCTGAGGTAGCAAGGAAGCAGACTA
8597305 AAGATTGAAG
1 AAGATTGAAG
8597315 ATTGGAAGAG
Statistics
Matches: 108, Mismatches: 25, Indels: 28
0.67 0.16 0.17
Matches are distributed among these distances:
41 4 0.04
43 3 0.03
44 64 0.59
45 3 0.03
48 4 0.04
49 22 0.20
50 4 0.04
52 4 0.04
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (43 bp):
AAGATTGAAGTCTTATCTCCTGAGGTAGCAAGGAAGCAGACTA
Found at i:8597248 original size:137 final size:138
Alignment explanation
Indices: 8597059--8597458 Score: 538
Period size: 147 Copynumber: 2.9 Consensus size: 138
8597049 GATTTCAGTA
* * * *
8597059 GTATCGACAATGAAGCAGATTTTA-CCATC-AGCCTTATCTCTCTAAGGTAGCAAGAGGGCAGGT
1 GTATCGACAATGGAGCAGATTTAAGCC-TCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGT
*
8597122 TGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTG-GAGGCAAATCT
65 TAAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGAGAGGCAAATCT
8597186 TATCTCCAT
130 TATCTCCAT
* ** * *
8597195 GTATTGGTAATGGAGCAGATTTAAGCCTCAAGCCTTATCTCTCTGAGGTAGCAAGAAAGCTGGTT
1 GTATCGACAATGGAGCAGATTTAAGCCTCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTT
* *
8597260 CAATATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATTGGAAGAG
66 AAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACT----A---AAGATT-G-AGAG
8597325 GCAAATCTTATCTCCAT
122 GCAAATCTTATCTCCAT
* *
8597342 GTATCGACAATGGAGCAGATTTAAGCCTCAAGCCTTATCTCTTTGAGGTAGTAAGAGAGCAGGTT
1 GTATCGACAATGGAGCAGATTTAAGCCTCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTT
* *
8597407 AAAGATTG-AGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTAAAGATTGA
66 AAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGA
8597459 ATATCTTATC
Statistics
Matches: 230, Mismatches: 22, Indels: 23
0.84 0.08 0.08
Matches are distributed among these distances:
136 21 0.09
137 76 0.33
138 1 0.00
139 6 0.03
141 1 0.00
142 1 0.00
144 6 0.03
145 1 0.00
146 33 0.14
147 84 0.37
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (138 bp):
GTATCGACAATGGAGCAGATTTAAGCCTCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTT
AAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGAGAGGCAAATCTT
ATCTCCAT
Found at i:8597432 original size:43 final size:43
Alignment explanation
Indices: 8597375--8597458 Score: 116
Period size: 43 Copynumber: 2.0 Consensus size: 43
8597365 AGCCTCAAGC
* * **
8597375 CTTATCTCTTTGAGGTAGTAAGAGAGCAGGTTAAAGATTGAGT
1 CTTATCTCTTTGAGGTAGCAAGAAAGCAGACTAAAGATTGAGT
8597418 CTTATCT-TTCTGAGGTAGCAAGAAAGCAGACTAAAGATTGA
1 CTTATCTCTT-TGAGGTAGCAAGAAAGCAGACTAAAGATTGA
8597459 ATATCTTATC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
42 2 0.06
43 34 0.94
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (43 bp):
CTTATCTCTTTGAGGTAGCAAGAAAGCAGACTAAAGATTGAGT
Found at i:8597688 original size:177 final size:177
Alignment explanation
Indices: 8597319--8597729 Score: 513
Period size: 177 Copynumber: 2.3 Consensus size: 177
8597309 TTGAAGATTG
* * * *
8597319 GAAGA-GGCAAATCTTATCTCCATGTATCGACAATGGAGCAGATTTAAGCCTCAAGCCTTATCTC
1 GAAGATGGCAAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCACTAGTCTTATCTC
* * * * *
8597383 TTTGAGGTAGTAAGAGAGCAGGTTAAAGATTGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGA
66 TCTGAAGTAGCAAGAGAGCAGGTTAAAGATTGAGTCTTATCTTCCTGAGGTAGAAAGAAAGCAGA
* * *
8597448 CTAAAGATTGAATATCTTATCTCCCCTAAGCGGTAGTGGAGTAGATC
131 CTAAAGATTGAAGATCTTATCTCCCCTAAGCAGTAGTGGAGCAGATC
** * *
8597495 GAAGATGGTGAATCTTATCTCCATGTACCGGCAATGGAGCAGATTTTAGCCACTAGTCTTATCTC
1 GAAGATGGCAAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCACTAGTCTTATCTC
*** * * *
8597560 TCTGAAGTAGCAAGAGAGCAGGTTGGCGATTTTAGTCTTATCTTCCTGAGGTAGAAAGGAAGTAG
66 TCTGAAGTAGCAAGAGAGCAGGTTAAAGA-TTGAGTCTTATCTTCCTGAGGTAGAAAGAAAGCAG
* * * * *
8597625 ACTGAAGATTGAAGATC-TAT-TTCCCTAAAGTAGTTGTGGAGCAGATT
130 ACTAAAGATTGAAGATCTTATCTCCCCT-AAGCAGTAGTGGAGCAGATC
* * *
8597672 GAGGATGGCAAATCTTATCTCCATGTATTGGCAATGGAGCAGATTTAAGTCACTAGTC
1 GAAGATGGCAAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCACTAGTC
8597730 CTATTTCCTT
Statistics
Matches: 198, Mismatches: 34, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
176 10 0.05
177 143 0.72
178 45 0.23
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (177 bp):
GAAGATGGCAAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCACTAGTCTTATCTC
TCTGAAGTAGCAAGAGAGCAGGTTAAAGATTGAGTCTTATCTTCCTGAGGTAGAAAGAAAGCAGA
CTAAAGATTGAAGATCTTATCTCCCCTAAGCAGTAGTGGAGCAGATC
Found at i:8598065 original size:19 final size:19
Alignment explanation
Indices: 8598041--8598079 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
8598031 CTTCCGCCCA
*
8598041 GCCTCCATGCTCCAC-AACG
1 GCCTCCACGC-CCACGAACG
8598060 GCCTCCACGCCCACGAACG
1 GCCTCCACGCCCACGAACG
8598079 G
1 G
8598080 TTTCTCCACG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.21, C:0.49, G:0.21, T:0.10
Consensus pattern (19 bp):
GCCTCCACGCCCACGAACG
Found at i:8599280 original size:21 final size:22
Alignment explanation
Indices: 8599245--8599287 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
8599235 TAAAGATTTC
* *
8599245 AAAATAATAATTTATTTAAACA
1 AAAATAATAAATTATTAAAACA
8599267 AAAATAA-AAATTATTAAAACA
1 AAAATAATAAATTATTAAAACA
8599288 GTTCTGACAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (22 bp):
AAAATAATAAATTATTAAAACA
Found at i:8608550 original size:51 final size:51
Alignment explanation
Indices: 8608479--8608581 Score: 188
Period size: 51 Copynumber: 2.0 Consensus size: 51
8608469 CTGATCACAT
8608479 TTATCACTTGTCACTGATCAGATAAGTGCAACTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGCAACTAAAGCTACCACTTATCAC
* *
8608530 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGCAACTAAAGCTACCACTTATCAC
8608581 T
1 T
8608582 GGTCAGATAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.31
Consensus pattern (51 bp):
TTATCACTTGTCACTGATCAGATAAGTGCAACTAAAGCTACCACTTATCAC
Found at i:8608575 original size:44 final size:44
Alignment explanation
Indices: 8608527--8608632 Score: 136
Period size: 37 Copynumber: 2.6 Consensus size: 44
8608517 TACCACTTAT
*
8608527 CACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTGTCACTGATCAGATAAGTATAGCTAAAGCTAC
* *
8608571 CACTTATCAC-TG-----G-TCAGATAAGTATAGCTGAGGCTAC
1 CACTTATCACTTGTCACTGATCAGATAAGTATAGCTAAAGCTAC
8608608 CACTTATCACTTGTCACTGATCAGA
1 CACTTATCACTTGTCACTGATCAGA
8608633 AGTACTCAAA
Statistics
Matches: 52, Mismatches: 3, Indels: 14
0.75 0.04 0.20
Matches are distributed among these distances:
37 31 0.60
38 3 0.06
43 3 0.06
44 15 0.29
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (44 bp):
CACTTATCACTTGTCACTGATCAGATAAGTATAGCTAAAGCTAC
Found at i:8611563 original size:43 final size:44
Alignment explanation
Indices: 8611492--8611576 Score: 102
Period size: 43 Copynumber: 2.0 Consensus size: 44
8611482 TGTTACACGA
*
8611492 CCTGGTGACACGACTATGTAACCTTA-TTTCGAA-TTGTACATAG
1 CCTGGTGACACGACTATGTAACCCTATTTTC-AATTTGTACATAG
* * **
8611535 CCTGGTGACACGATTGTGTGGCCCTATTTTCAATTTGTACAT
1 CCTGGTGACACGACTATGTAACCCTATTTTCAATTTGTACAT
8611577 GGTTTGGCCA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
43 23 0.66
44 12 0.34
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (44 bp):
CCTGGTGACACGACTATGTAACCCTATTTTCAATTTGTACATAG
Found at i:8613620 original size:12 final size:12
Alignment explanation
Indices: 8613603--8613628 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8613593 ATTTTTCTCA
8613603 AATAATTAAGCG
1 AATAATTAAGCG
8613615 AATAATTAAGCG
1 AATAATTAAGCG
8613627 AA
1 AA
8613629 ATCAAGTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.08, G:0.15, T:0.23
Consensus pattern (12 bp):
AATAATTAAGCG
Found at i:8617341 original size:46 final size:46
Alignment explanation
Indices: 8617289--8617478 Score: 335
Period size: 46 Copynumber: 4.1 Consensus size: 46
8617279 TTTTGAAATG
*
8617289 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATA
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATA
* * *
8617335 AAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGATATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATA
*
8617381 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATA
8617427 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATA
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATA
8617473 AAATGT
1 AAATGT
8617479 AACGCTCCGA
Statistics
Matches: 139, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 139 1.00
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.23
Consensus pattern (46 bp):
AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATA
Found at i:8617796 original size:3 final size:3
Alignment explanation
Indices: 8617788--8617812 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
8617778 TGTTTATGAA
8617788 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
8617813 GTAATTAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:8618898 original size:19 final size:20
Alignment explanation
Indices: 8618853--8618898 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
8618843 ATATGTTTGT
*
8618853 TATGGGCCAACTGTATTGAA
1 TATGGCCCAACTGTATTGAA
*
8618873 -ATCGGCCCAACTGTGTT-AA
1 TAT-GGCCCAACTGTATTGAA
8618892 TATGGCC
1 TATGGCC
8618899 AAGGCCCAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (20 bp):
TATGGCCCAACTGTATTGAA
Found at i:8619819 original size:46 final size:46
Alignment explanation
Indices: 8619760--8619879 Score: 152
Period size: 46 Copynumber: 2.6 Consensus size: 46
8619750 TAAAATGTGT
**
8619760 AAGACCATGGTTGAAAGATACCATGGCAATGTAACATG-AAATGAAC
1 AAGACCATGGTTGAAAGATACCATGGCAACCTAACA-GAAAATGAAC
* **
8619806 AAGACCATGGTTGAAAGATACCATGGCAACCTGACAGAAAATGAGT
1 AAGACCATGGTTGAAAGATACCATGGCAACCTAACAGAAAATGAAC
* * *
8619852 AAGACCATAGTTGAAAGACACTATGGCA
1 AAGACCATGGTTGAAAGATACCATGGCA
8619880 TCATGTCAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
45 1 0.02
46 64 0.98
ACGTcount: A:0.42, C:0.17, G:0.23, T:0.18
Consensus pattern (46 bp):
AAGACCATGGTTGAAAGATACCATGGCAACCTAACAGAAAATGAAC
Found at i:8622379 original size:47 final size:47
Alignment explanation
Indices: 8622310--8622829 Score: 886
Period size: 47 Copynumber: 11.1 Consensus size: 47
8622300 TATGAAATGA
8622310 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
8622357 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
8622404 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
8622451 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
8622498 TGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
8622545 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
8622590 TGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
8622637 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
8622684 TAATAAGGCCTAATGG-CGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
8622730 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
** * * * * * * *
8622777 TGA-CGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
8622823 TGATAAG
1 TGATAAG
8622830 TCCCGAAGGG
Statistics
Matches: 448, Mismatches: 21, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
45 44 0.10
46 82 0.18
47 322 0.72
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
Found at i:8622669 original size:139 final size:140
Alignment explanation
Indices: 8622310--8622829 Score: 875
Period size: 139 Copynumber: 3.7 Consensus size: 140
8622300 TATGAAATGA
8622310 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
8622375 GATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
66 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
8622440 GTGTATATATG
131 GTG-ATATATG
* *
8622451 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCC
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
8622516 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
66 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
8622581 GTG-TATATG
131 GTGATATATG
*
8622590 TGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
8622655 GATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGG-CGATGTGATGAATGTGAAA
66 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
8622719 GTGTATATATG
131 GTG-ATATATG
** * *
8622730 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA-CGGGCCGAGTGGCC
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* * * * *
8622794 AACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
66 GATGTGATGAATGTGAAAGTGTATATATGTGATAAG
8622830 TCCCGAAGGG
Statistics
Matches: 359, Mismatches: 18, Indels: 6
0.94 0.05 0.02
Matches are distributed among these distances:
138 22 0.06
139 152 0.42
140 55 0.15
141 130 0.36
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (140 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
GTGATATATG
Found at i:8623004 original size:37 final size:37
Alignment explanation
Indices: 8622948--8623026 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
8622938 CCGAGCTCTA
* *
8622948 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
8622985 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
8623022 AAGAC
1 AAGAC
8623027 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:8624646 original size:16 final size:17
Alignment explanation
Indices: 8624625--8624657 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8624615 ATGATAGAGC
8624625 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
8624641 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
8624658 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:8633603 original size:15 final size:15
Alignment explanation
Indices: 8633583--8633617 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
8633573 GCAGACAATT
8633583 GTTTTTATTAATAAA
1 GTTTTTATTAATAAA
8633598 GTTTTTATTAATAAA
1 GTTTTTATTAATAAA
8633613 GTTTT
1 GTTTT
8633618 CATCTCTAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (15 bp):
GTTTTTATTAATAAA
Found at i:8635339 original size:21 final size:21
Alignment explanation
Indices: 8635313--8635393 Score: 63
Period size: 21 Copynumber: 3.8 Consensus size: 21
8635303 ATCAGTATAT
*
8635313 GACACATAAAGTGCCTAAAAC
1 GACACACAAAGTGCCTAAAAC
* * * *
8635334 GACACACGAGGTGCCTGATAC
1 GACACACAAAGTGCCTAAAAC
* *
8635355 GACACACGAGGTGCCTGAAATAC
1 GACACACAAAGTGCCT-AAA-AC
* *
8635378 GACATATAAAGTGCCT
1 GACACACAAAGTGCCT
8635394 GATCAGTAAA
Statistics
Matches: 47, Mismatches: 11, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
21 32 0.68
22 1 0.02
23 14 0.30
ACGTcount: A:0.37, C:0.25, G:0.22, T:0.16
Consensus pattern (21 bp):
GACACACAAAGTGCCTAAAAC
Found at i:8635361 original size:23 final size:22
Alignment explanation
Indices: 8635323--8635381 Score: 86
Period size: 21 Copynumber: 2.7 Consensus size: 22
8635313 GACACATAAA
*
8635323 GTGCCT-AAAACGACACACGAG
1 GTGCCTGAATACGACACACGAG
8635344 GTGCCTG-ATACGACACACGAG
1 GTGCCTGAATACGACACACGAG
8635365 GTGCCTGAAATACGACA
1 GTGCCTG-AATACGACA
8635382 TATAAAGTGC
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
21 26 0.76
23 8 0.24
ACGTcount: A:0.34, C:0.27, G:0.25, T:0.14
Consensus pattern (22 bp):
GTGCCTGAATACGACACACGAG
Found at i:8641812 original size:21 final size:21
Alignment explanation
Indices: 8641768--8641808 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
8641758 TTTGAAATAA
8641768 AAATAAAATAAAATAAAATTT
1 AAATAAAATAAAATAAAATTT
8641789 AAAT-AAAT-AAATAAACATTT
1 AAATAAAATAAAATAAA-ATTT
8641809 TAAACATGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.37
20 8 0.42
21 4 0.21
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.29
Consensus pattern (21 bp):
AAATAAAATAAAATAAAATTT
Found at i:8643215 original size:27 final size:27
Alignment explanation
Indices: 8643185--8643236 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
8643175 GTGTCATGTG
*
8643185 AAATTGAATGGAAAATTATTGTTACAC
1 AAATTGAATGGAAAATTATTATTACAC
* **
8643212 AAATTGAGTGTTAAATTATTATTAC
1 AAATTGAATGGAAAATTATTATTAC
8643237 CTGGGTTGTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.42, C:0.06, G:0.13, T:0.38
Consensus pattern (27 bp):
AAATTGAATGGAAAATTATTATTACAC
Found at i:8648607 original size:26 final size:26
Alignment explanation
Indices: 8648560--8648613 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
8648550 TTAAAATTTT
* * *
8648560 TTCAAATCTAGTCGAGTGAAATAAAA
1 TTCAAATCAAGTCGAATCAAATAAAA
* *
8648586 TTCAAGTCAAGTCGAATCAAATGAAA
1 TTCAAATCAAGTCGAATCAAATAAAA
8648612 TT
1 TT
8648614 GTTCGAGTTA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.44, C:0.13, G:0.15, T:0.28
Consensus pattern (26 bp):
TTCAAATCAAGTCGAATCAAATAAAA
Found at i:8649477 original size:19 final size:19
Alignment explanation
Indices: 8649455--8649521 Score: 107
Period size: 19 Copynumber: 3.5 Consensus size: 19
8649445 AAAAATAATT
8649455 TTTTGAATTTTAAAATTTA
1 TTTTGAATTTTAAAATTTA
8649474 TTTTGAATTTTAAAATTTA
1 TTTTGAATTTTAAAATTTA
*
8649493 TTTTGAATTTTTAAAAATTA
1 TTTTGAA-TTTTAAAATTTA
*
8649513 TTTCGAATT
1 TTTTGAATT
8649522 ATTTTGTAAG
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
19 28 0.62
20 17 0.38
ACGTcount: A:0.36, C:0.01, G:0.06, T:0.57
Consensus pattern (19 bp):
TTTTGAATTTTAAAATTTA
Found at i:8649626 original size:18 final size:18
Alignment explanation
Indices: 8649603--8649642 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 18
8649593 CACTAATTCG
8649603 TTATTTGAAC-TATTCAAA
1 TTATTTG-ACTTATTCAAA
8649621 TTATTTGACTTATTCAAA
1 TTATTTGACTTATTCAAA
8649639 TTAT
1 TTAT
8649643 AAAATTCAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 2 0.10
18 19 0.90
ACGTcount: A:0.35, C:0.10, G:0.05, T:0.50
Consensus pattern (18 bp):
TTATTTGACTTATTCAAA
Found at i:8654158 original size:15 final size:14
Alignment explanation
Indices: 8654126--8654192 Score: 89
Period size: 14 Copynumber: 4.7 Consensus size: 14
8654116 CCAGAAAAGT
8654126 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
8654140 AAATTATTTTCCAAG
1 AAATCATTTTCC-AG
*
8654155 AAATTATTTTCCAG
1 AAATCATTTTCCAG
*
8654169 AAATCATTTTCCGG
1 AAATCATTTTCCAG
*
8654183 AAAACATTTT
1 AAATCATTTT
8654193 ACCTGCAAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
14 34 0.71
15 14 0.29
ACGTcount: A:0.37, C:0.16, G:0.07, T:0.39
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:8656039 original size:24 final size:23
Alignment explanation
Indices: 8656012--8656060 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 23
8656002 AATTTTTTGG
*
8656012 TTTTT-TTCTGGGCTTGGTTTTGA
1 TTTTTGTTTTGGGCTTGGTTTT-A
8656035 TTTTTGTTTTGGGCTTGGTTTTA
1 TTTTTGTTTTGGGCTTGGTTTTA
8656058 TTT
1 TTT
8656061 GTCAGTATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 9 0.38
24 15 0.62
ACGTcount: A:0.04, C:0.06, G:0.24, T:0.65
Consensus pattern (23 bp):
TTTTTGTTTTGGGCTTGGTTTTA
Found at i:8656643 original size:4 final size:4
Alignment explanation
Indices: 8656634--8656671 Score: 67
Period size: 4 Copynumber: 9.2 Consensus size: 4
8656624 TTTCAATAAA
8656634 AAAG AAAG AAAAG AAAG AAAG AAAG AAAG AAAG AAAG A
1 AAAG AAAG -AAAG AAAG AAAG AAAG AAAG AAAG AAAG A
8656672 GAAAAGGGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 29 0.88
5 4 0.12
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:8656979 original size:20 final size:20
Alignment explanation
Indices: 8656954--8656995 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
8656944 AAGGTGAGAC
* *
8656954 AAAAAAATAATAGAAAATGA
1 AAAAAAATAATAAAAAAGGA
8656974 AAAAAAATAATAAAAAAGGA
1 AAAAAAATAATAAAAAAGGA
8656994 AA
1 AA
8656996 GAAACTTGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.79, C:0.00, G:0.10, T:0.12
Consensus pattern (20 bp):
AAAAAAATAATAAAAAAGGA
Found at i:8658916 original size:56 final size:56
Alignment explanation
Indices: 8658855--8658968 Score: 219
Period size: 56 Copynumber: 2.0 Consensus size: 56
8658845 TTAAATAAAA
*
8658855 ATAGATTTTAATAAATAATAATATAAACTGAACCGAACAAATCCAAAGTTAAATTT
1 ATAGATTTTAATAAATAATAATATAAACTGAACCGAACAAATCCAAAATTAAATTT
8658911 ATAGATTTTAATAAATAATAATATAAACTGAACCGAACAAATCCAAAATTAAATTT
1 ATAGATTTTAATAAATAATAATATAAACTGAACCGAACAAATCCAAAATTAAATTT
8658967 AT
1 AT
8658969 CTCATCGACC
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.53, C:0.11, G:0.06, T:0.31
Consensus pattern (56 bp):
ATAGATTTTAATAAATAATAATATAAACTGAACCGAACAAATCCAAAATTAAATTT
Found at i:8660174 original size:40 final size:37
Alignment explanation
Indices: 8660130--8660204 Score: 96
Period size: 40 Copynumber: 1.9 Consensus size: 37
8660120 CTAATTTTTT
* *
8660130 TTATAAAAAATATATTAAAATATATATAAATTTATAAATA
1 TTATAAAAAATATAAT-AAAT-TATA-AAATTAATAAATA
*
8660170 TTATAAAAAATCTAATAAATTATAAAATTAATAAA
1 TTATAAAAAATATAATAAATTATAAAATTAATAAA
8660205 AAGATATTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
37 10 0.31
38 4 0.12
39 4 0.12
40 14 0.44
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.37
Consensus pattern (37 bp):
TTATAAAAAATATAATAAATTATAAAATTAATAAATA
Found at i:8660188 original size:29 final size:29
Alignment explanation
Indices: 8660146--8660219 Score: 82
Period size: 28 Copynumber: 2.6 Consensus size: 29
8660136 AAAATATATT
8660146 AAAATATATATAAATTTATAAATATT-ATAA
1 AAAATATATATAAA-TTATAAA-ATTAATAA
*
8660176 AAAATCTA-ATAAATTATAAAATTAATAA
1 AAAATATATATAAATTATAAAATTAATAA
*
8660204 AAAGATATTTA-AAATT
1 AAA-ATATATATAAATT
8660220 TTATAAAAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
27 3 0.08
28 14 0.37
29 13 0.34
30 8 0.21
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.36
Consensus pattern (29 bp):
AAAATATATATAAATTATAAAATTAATAA
Found at i:8660216 original size:28 final size:28
Alignment explanation
Indices: 8660137--8660226 Score: 78
Period size: 28 Copynumber: 3.1 Consensus size: 28
8660127 TTTTTATAAA
*
8660137 AAATA-TATTAAAATATATATAAATTTAT
1 AAATATTA-TAAAAAATATATAAATTTAT
*
8660165 AAATATTATAAAAAATCTAATAAA-TTAT
1 AAATATTATAAAAAATAT-ATAAATTTAT
*
8660193 AAA-ATTAATAAAAAGATATTTAAAATTTTAT
1 AAATATT-ATAAAAA-ATATAT-AAA-TTTAT
8660224 AAA
1 AAA
8660227 AACGTATAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
27 3 0.06
28 28 0.55
29 13 0.25
31 7 0.14
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.38
Consensus pattern (28 bp):
AAATATTATAAAAAATATATAAATTTAT
Found at i:8661301 original size:19 final size:17
Alignment explanation
Indices: 8661279--8661339 Score: 59
Period size: 20 Copynumber: 3.2 Consensus size: 17
8661269 AATTACAAAA
8661279 AAAATTCAAAATCATTTT
1 AAAATTCAAAAT-ATTTT
8661297 CAAAAATTCAAAATAACTTTT
1 --AAAATTCAAAAT-A-TTTT
*
8661318 AAAAGTCAAAATATTTAT
1 AAAATTCAAAATATTT-T
8661336 AAAA
1 AAAA
8661340 ATTCCAAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
17 3 0.08
18 6 0.16
19 11 0.30
20 13 0.35
21 4 0.11
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAATTCAAAATATTTT
Found at i:8661340 original size:19 final size:19
Alignment explanation
Indices: 8661278--8661348 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
8661268 AAATTACAAA
*
8661278 AAAAATTCAAAATCATTTT
1 AAAAATTCAAAATAATTTT
8661297 CAAAAATTCAAAATAACTTTT
1 -AAAAATTCAAAATAA-TTTT
*
8661318 -AAAAGTCAAAAT-ATTTAT
1 AAAAATTCAAAATAATTT-T
*
8661336 AAAAATTCCAAAT
1 AAAAATTCAAAAT
8661349 TTTATATTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
17 3 0.07
18 2 0.05
19 21 0.48
20 14 0.32
21 4 0.09
ACGTcount: A:0.55, C:0.11, G:0.01, T:0.32
Consensus pattern (19 bp):
AAAAATTCAAAATAATTTT
Found at i:8662067 original size:29 final size:28
Alignment explanation
Indices: 8662027--8662090 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 28
8662017 TATTTAACCT
* *
8662027 TAATATTTATAAGCT-TTTATAATTTTTAA
1 TAAT-TTTATAAG-TATATATAAATTTTAA
8662056 TAATTTTAATAAGTATATATAAATTTTAA
1 TAATTTT-ATAAGTATATATAAATTTTAA
8662085 T-ATTTT
1 TAATTTT
8662091 GATTTTTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 9 0.29
29 22 0.71
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.55
Consensus pattern (28 bp):
TAATTTTATAAGTATATATAAATTTTAA
Found at i:8662110 original size:12 final size:12
Alignment explanation
Indices: 8662093--8662120 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
8662083 AATATTTTGA
8662093 TTTTTTATAATT
1 TTTTTTATAATT
8662105 TTTTTTATAATT
1 TTTTTTATAATT
8662117 TTTT
1 TTTT
8662121 AATATTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTTTATAATT
Found at i:8672850 original size:15 final size:15
Alignment explanation
Indices: 8672830--8672895 Score: 50
Period size: 15 Copynumber: 4.5 Consensus size: 15
8672820 TTCTTTTCTT
8672830 TATTA-TTATTTGTTA
1 TATTATTTATTT-TTA
8672845 TATTATTTATTTTTA
1 TATTATTTATTTTTA
* *
8672860 T-TT-TCCTAATTTTA
1 TATTAT-TTATTTTTA
*
8672874 TTTTATTTATTTATT-
1 TATTATTTATTT-TTA
8672889 TATTATT
1 TATTATT
8672896 CTTATACTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
13 1 0.02
14 10 0.24
15 21 0.51
16 9 0.22
ACGTcount: A:0.24, C:0.03, G:0.02, T:0.71
Consensus pattern (15 bp):
TATTATTTATTTTTA
Found at i:8673017 original size:13 final size:13
Alignment explanation
Indices: 8672999--8673037 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
8672989 ATTGAGTTTA
*
8672999 TTATTTTTTTGTT
1 TTATTTTTTTATT
8673012 TTA-TTTTTTATT
1 TTATTTTTTTATT
8673024 TTATTTTTTTATT
1 TTATTTTTTTATT
8673037 T
1 T
8673038 ATCTTTCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 11 0.46
13 13 0.54
ACGTcount: A:0.13, C:0.00, G:0.03, T:0.85
Consensus pattern (13 bp):
TTATTTTTTTATT
Found at i:8673020 original size:12 final size:11
Alignment explanation
Indices: 8673003--8673061 Score: 55
Period size: 12 Copynumber: 5.0 Consensus size: 11
8672993 AGTTTATTAT
8673003 TTTTTTGTTTTA
1 TTTTTT-TTTTA
8673015 TTTTTTATTTTA
1 TTTTTT-TTTTA
8673027 TTTTTTTATTTA
1 TTTTTTT-TTTA
*
8673039 TCTTTCTTTTTA
1 T-TTTTTTTTTA
* *
8673051 ATTTTGTTTTA
1 TTTTTTTTTTA
8673062 GTTGCTTTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
11 9 0.22
12 26 0.65
13 5 0.12
ACGTcount: A:0.14, C:0.03, G:0.03, T:0.80
Consensus pattern (11 bp):
TTTTTTTTTTA
Found at i:8673024 original size:20 final size:20
Alignment explanation
Indices: 8672999--8673037 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
8672989 ATTGAGTTTA
8672999 TTATTTT-TTTGTTTTATTTT
1 TTATTTTATTT-TTTTATTTT
8673019 TTATTTTATTTTTTTATTT
1 TTATTTTATTTTTTTATTT
8673038 ATCTTTCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.13, C:0.00, G:0.03, T:0.85
Consensus pattern (20 bp):
TTATTTTATTTTTTTATTTT
Found at i:8678128 original size:5 final size:5
Alignment explanation
Indices: 8678106--8678149 Score: 63
Period size: 5 Copynumber: 8.6 Consensus size: 5
8678096 TTGTGTGTTC
8678106 TTTAT CTTTAT CTTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT -TTTAT -TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
8678150 TCACATTAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
4 4 0.11
5 22 0.59
6 11 0.30
ACGTcount: A:0.18, C:0.05, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTAT
Found at i:8678132 original size:9 final size:9
Alignment explanation
Indices: 8678118--8678148 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
8678108 TATCTTTATC
8678118 TTTATTTTA
1 TTTATTTTA
8678127 TTTATTTTA
1 TTTATTTTA
8678136 TTTTATTTTA
1 -TTTATTTTA
8678146 TTT
1 TTT
8678149 TTCACATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:8678827 original size:2 final size:2
Alignment explanation
Indices: 8678820--8678876 Score: 105
Period size: 2 Copynumber: 28.5 Consensus size: 2
8678810 TTATTGTAAA
*
8678820 AG AG AG AG AG AG AG GG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
8678862 AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG A
8678877 AGAAAGAAAT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
AG
Found at i:8679893 original size:44 final size:43
Alignment explanation
Indices: 8679826--8679986 Score: 163
Period size: 44 Copynumber: 3.7 Consensus size: 43
8679816 TATGTGTTAT
* *
8679826 CGTGTAAGACCACGTCTGTGACGTTGGTATTGACTTATGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATTGA-TTATGATTTA
* *
8679870 CGTGTAAGACCACGTCTGGGACGTTGGCATTGTTTTTGAGTTT-
1 CGTGTAAGACCACGTCTGGGACGTTGGCATTGATTATGA-TTTA
* *
8679913 -GTGTAAGACC-CTGTCTGGGACAG-TGGCA-TCAATATTCGA-TTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATTGATTA-T-GATTTA
*
8679955 CATGTAAGACCACGTCTGGGACGTTGGCATTG
1 CGTGTAAGACCACGTCTGGGACGTTGGCATTG
8679987 TACGAGCTTT
Statistics
Matches: 97, Mismatches: 10, Indels: 20
0.76 0.08 0.16
Matches are distributed among these distances:
41 5 0.05
42 26 0.27
43 31 0.32
44 35 0.36
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATTGATTATGATTTA
Found at i:8683657 original size:20 final size:20
Alignment explanation
Indices: 8683634--8683677 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
8683624 AGAGGCATCC
* *
8683634 AAGTGCAAACAGAGTCACCG
1 AAGTGCAAACAAAGTCACCA
8683654 AAGTGCAAACAAAGTCACCA
1 AAGTGCAAACAAAGTCACCA
8683674 AAGT
1 AAGT
8683678 ACAATCTTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.45, C:0.23, G:0.20, T:0.11
Consensus pattern (20 bp):
AAGTGCAAACAAAGTCACCA
Found at i:8685700 original size:22 final size:22
Alignment explanation
Indices: 8685675--8685718 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
8685665 ACAAGAACTC
*
8685675 AAAGAATGAAAAGAAGATTACT
1 AAAGAATCAAAAGAAGATTACT
*
8685697 AAAGAATCAAAGGAAGATTACT
1 AAAGAATCAAAAGAAGATTACT
8685719 TAACTCGTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.57, C:0.07, G:0.18, T:0.18
Consensus pattern (22 bp):
AAAGAATCAAAAGAAGATTACT
Found at i:8697292 original size:25 final size:24
Alignment explanation
Indices: 8697262--8697318 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 24
8697252 TATCTTGTGT
* *
8697262 GAGCATATTGATTTATAGCTCGTGA
1 GAGCATACTGA-TTACAGCTCGTGA
*
8697287 GAGCATACTGATTGCAGCTCGTGA
1 GAGCATACTGATTACAGCTCGTGA
8697311 GAGCATAC
1 GAGCATAC
8697319 CGATCTATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 19 0.66
25 10 0.34
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (24 bp):
GAGCATACTGATTACAGCTCGTGA
Found at i:8697357 original size:25 final size:25
Alignment explanation
Indices: 8697275--8697357 Score: 62
Period size: 25 Copynumber: 3.4 Consensus size: 25
8697265 CATATTGATT
* **
8697275 TATAGCTCGTGAGAGCATACTGAT-
1 TATAGCTCGAGAGAGCATACCAATC
** * *
8697299 TGCAGCTCGTGAGAGCATACCGATC
1 TATAGCTCGAGAGAGCATACCAATC
* *
8697324 TATATCTCGAGCGAGCATACCAAT-
1 TATAGCTCGAGAGAGCATACCAATC
8697348 TCATAGCTCG
1 T-ATAGCTCG
8697358 TATGAGCATA
Statistics
Matches: 47, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
24 22 0.47
25 25 0.53
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (25 bp):
TATAGCTCGAGAGAGCATACCAATC
Found at i:8706212 original size:35 final size:35
Alignment explanation
Indices: 8706173--8706243 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
8706163 GTTTTAGTTG
*
8706173 ATAGAGCACACAAGGCTGAAGAACTCAGCAAAGAA
1 ATAGAGCACACAAGGCTGAAAAACTCAGCAAAGAA
8706208 ATAGAGCACACAAGGCTGAAAAACTCAGCAAAGAA
1 ATAGAGCACACAAGGCTGAAAAACTCAGCAAAGAA
8706243 A
1 A
8706244 AAAGAAAAGC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.51, C:0.20, G:0.21, T:0.08
Consensus pattern (35 bp):
ATAGAGCACACAAGGCTGAAAAACTCAGCAAAGAA
Found at i:8724410 original size:14 final size:14
Alignment explanation
Indices: 8724391--8724420 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8724381 TGGCTCAAAG
*
8724391 AAAATAAATTATTA
1 AAAATAAAATATTA
8724405 AAAATAAAATATTA
1 AAAATAAAATATTA
8724419 AA
1 AA
8724421 CATTATAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
AAAATAAAATATTA
Found at i:8724889 original size:12 final size:11
Alignment explanation
Indices: 8724857--8724886 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
8724847 TGGAATTTTT
8724857 ATATTTTTAAA
1 ATATTTTTAAA
8724868 ATATTTTTAAA
1 ATATTTTTAAA
8724879 ATATTTTT
1 ATATTTTT
8724887 TAATTTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
ATATTTTTAAA
Found at i:8725309 original size:12 final size:12
Alignment explanation
Indices: 8725292--8725316 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8725282 TTTAATCCTA
8725292 AACAATATTTTT
1 AACAATATTTTT
8725304 AACAATATTTTT
1 AACAATATTTTT
8725316 A
1 A
8725317 TTATTATATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (12 bp):
AACAATATTTTT
Found at i:8725586 original size:17 final size:17
Alignment explanation
Indices: 8725564--8725596 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
8725554 ACTGAGCTTA
8725564 ATATATTATGTCAAAAT
1 ATATATTATGTCAAAAT
8725581 ATATATTATGTCAAAA
1 ATATATTATGTCAAAA
8725597 GTATGATTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (17 bp):
ATATATTATGTCAAAAT
Found at i:8731708 original size:28 final size:28
Alignment explanation
Indices: 8731676--8731752 Score: 86
Period size: 29 Copynumber: 2.7 Consensus size: 28
8731666 TTTAATTAGT
8731676 TTTTTAAAATTTTAAAAATTTAAAAATTA
1 TTTTTAAAATTTTAAAAATTTAAAAA-TA
* *
8731705 TTTTTAAAA-ATTAAAAAGTATAAAAATA
1 TTTTTAAAATTTTAAAAA-TTTAAAAATA
*
8731733 TTTTT-AAGTTTTAGAAAATT
1 TTTTTAAAATTTTA-AAAATT
8731753 AATTAAATGT
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
27 2 0.05
28 18 0.45
29 20 0.50
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (28 bp):
TTTTTAAAATTTTAAAAATTTAAAAATA
Found at i:8732673 original size:18 final size:17
Alignment explanation
Indices: 8732650--8732683 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
8732640 ATTATTACCT
*
8732650 TTTAAAATTAAATAAAAA
1 TTTAAAAATAAA-AAAAA
8732668 TTTAAAAATAAAAAAA
1 TTTAAAAATAAAAAAA
8732684 TAAATTGTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TTTAAAAATAAAAAAAA
Found at i:8732734 original size:31 final size:32
Alignment explanation
Indices: 8732699--8732776 Score: 88
Period size: 33 Copynumber: 2.4 Consensus size: 32
8732689 TGTTTTATAT
*
8732699 TTTAAATAAAAATATTATAA-TTTTTTAAAAA
1 TTTAAATAAAAATATTAAAATTTTTTTAAAAA
*
8732730 TTTAAA-AATAATATTTTAAAATTTTTTTAAAAA
1 TTTAAATAA-AA-ATATTAAAATTTTTTTAAAAA
**
8732763 TGAAAATAAAAATA
1 TTTAAATAAAAATA
8732777 AACCGTCTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
30 2 0.05
31 8 0.21
32 9 0.24
33 17 0.45
34 2 0.05
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.42
Consensus pattern (32 bp):
TTTAAATAAAAATATTAAAATTTTTTTAAAAA
Found at i:8732944 original size:32 final size:30
Alignment explanation
Indices: 8732905--8732982 Score: 93
Period size: 33 Copynumber: 2.5 Consensus size: 30
8732895 TTGTTCAAAT
** *
8732905 AATTTTTATTTTTATTTTTTTGAATTTTAA
1 AATTTTTATTTTTATTTTTTAAAAATTTAA
8732935 AGATTTTTTATTTTTTATTTTTTAAAAATTTAA
1 A-A-TTTTTA-TTTTTATTTTTTAAAAATTTAA
*
8732968 AATTTTCATTTTTAT
1 AATTTTTATTTTTAT
8732983 GTTCTTATTT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
30 8 0.20
31 6 0.15
32 7 0.17
33 20 0.49
ACGTcount: A:0.29, C:0.01, G:0.03, T:0.67
Consensus pattern (30 bp):
AATTTTTATTTTTATTTTTTAAAAATTTAA
Found at i:8733254 original size:6 final size:7
Alignment explanation
Indices: 8733212--8733252 Score: 73
Period size: 7 Copynumber: 5.9 Consensus size: 7
8733202 ATAAAGACTG
8733212 AATTTTT
1 AATTTTT
8733219 AATTTTT
1 AATTTTT
*
8733226 TATTTTT
1 AATTTTT
8733233 AATTTTT
1 AATTTTT
8733240 AATTTTT
1 AATTTTT
8733247 AATTTT
1 AATTTT
8733253 AAAAGGTATA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (7 bp):
AATTTTT
Found at i:8736538 original size:37 final size:38
Alignment explanation
Indices: 8736473--8736545 Score: 94
Period size: 37 Copynumber: 1.9 Consensus size: 38
8736463 CTGGAAGTAC
* * * *
8736473 GCTCTATCGAGCCAAATCTTAATGTTATACTGAATGAG
1 GCTCAATCGAGCCAAATCATAATATTATACTAAATGAG
*
8736511 GCTCAATCGAG-CAAATCATACTATTATACTAAATG
1 GCTCAATCGAGCCAAATCATAATATTATACTAAATG
8736546 GAGCTTAACT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
37 20 0.67
38 10 0.33
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (38 bp):
GCTCAATCGAGCCAAATCATAATATTATACTAAATGAG
Found at i:8739361 original size:9 final size:9
Alignment explanation
Indices: 8739347--8739387 Score: 64
Period size: 9 Copynumber: 4.6 Consensus size: 9
8739337 ATAAGTATAA
8739347 AATTAACCG
1 AATTAACCG
*
8739356 AATTAATCG
1 AATTAACCG
8739365 AATTAACCG
1 AATTAACCG
*
8739374 AATTAACCA
1 AATTAACCG
8739383 AATTA
1 AATTA
8739388 TTTGTATAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.49, C:0.17, G:0.07, T:0.27
Consensus pattern (9 bp):
AATTAACCG
Found at i:8739610 original size:18 final size:18
Alignment explanation
Indices: 8739587--8739621 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8739577 TTTTATTAAT
8739587 TTTTTTCAGTTAACCGAA
1 TTTTTTCAGTTAACCGAA
*
8739605 TTTTTTCGGTTAACCGA
1 TTTTTTCAGTTAACCGA
8739622 TCAGTTTCGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.23, C:0.17, G:0.14, T:0.46
Consensus pattern (18 bp):
TTTTTTCAGTTAACCGAA
Found at i:8744294 original size:13 final size:13
Alignment explanation
Indices: 8744276--8744303 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
8744266 AAACAACAGT
8744276 ACATATCTACATA
1 ACATATCTACATA
8744289 ACATATCTACATA
1 ACATATCTACATA
8744302 AC
1 AC
8744304 TTTAGTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.25, G:0.00, T:0.29
Consensus pattern (13 bp):
ACATATCTACATA
Found at i:8744872 original size:24 final size:21
Alignment explanation
Indices: 8744818--8744861 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
8744808 AGTCCTTAAT
8744818 TTAATTTTTTGTTGTTTTTAG
1 TTAATTTTTTGTTGTTTTTAG
8744839 TTAATTTTTTGTTGTTTTTAG
1 TTAATTTTTTGTTGTTTTTAG
8744860 TT
1 TT
8744862 CTTAAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.73
Consensus pattern (21 bp):
TTAATTTTTTGTTGTTTTTAG
Found at i:8745046 original size:29 final size:30
Alignment explanation
Indices: 8744975--8745044 Score: 99
Period size: 30 Copynumber: 2.3 Consensus size: 30
8744965 ATAAACATTT
8744975 AATTAGTTTTTAAAAATTATAAAAATAAAAA
1 AATTA-TTTTTAAAAATTATAAAAATAAAAA
8745006 AATTATTTTTAAAAATTA-AAAAGTATAAAAA
1 AATTATTTTTAAAAATTATAAAA--ATAAAAA
8745037 AA-TATTTT
1 AATTATTTT
8745045 AAGTTTTAGA
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
29 4 0.11
30 19 0.51
31 14 0.38
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.39
Consensus pattern (30 bp):
AATTATTTTTAAAAATTATAAAAATAAAAA
Found at i:8745520 original size:29 final size:29
Alignment explanation
Indices: 8745462--8745535 Score: 98
Period size: 28 Copynumber: 2.6 Consensus size: 29
8745452 ATTATAATTT
* * *
8745462 AGACTTATTTGAT-TTTTTAAAAATATAG
1 AGACTAATTTGATCTATTTAAAAATAGAG
*
8745490 AGACTAATTTGATCTATTTAATAATAGAG
1 AGACTAATTTGATCTATTTAAAAATAGAG
8745519 AGA-TAATTTGATCTATT
1 AGACTAATTTGATCTATT
8745536 CCCTATAATT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 26 0.63
29 15 0.37
ACGTcount: A:0.39, C:0.05, G:0.12, T:0.43
Consensus pattern (29 bp):
AGACTAATTTGATCTATTTAAAAATAGAG
Found at i:8746874 original size:26 final size:28
Alignment explanation
Indices: 8746832--8746885 Score: 69
Period size: 26 Copynumber: 2.0 Consensus size: 28
8746822 AGCTCGAAAC
8746832 AAAAAAATTATTTAAAAA-TA-AAAAAT
1 AAAAAAATTATTTAAAAATTATAAAAAT
*
8746858 AAAAATATT-TTTAAAAAATTATAAAAAT
1 AAAAAAATTATTT-AAAAATTATAAAAAT
8746886 CGATTCAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 3 0.12
26 13 0.54
27 2 0.08
28 6 0.25
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (28 bp):
AAAAAAATTATTTAAAAATTATAAAAAT
Found at i:8756094 original size:23 final size:21
Alignment explanation
Indices: 8756068--8756131 Score: 73
Period size: 19 Copynumber: 3.1 Consensus size: 21
8756058 CTTCTACCTT
*
8756068 ATACAACTTGGTTTTCAAATTGG
1 ATACAACTT--TTTACAAATTGG
8756091 ATACAAC--TTTACAAATTGG
1 ATACAACTTTTTACAAATTGG
8756110 ATACAAC--TTTACAAATTGG
1 ATACAACTTTTTACAAATTGG
8756129 ATA
1 ATA
8756132 AAGCTTATCA
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
19 33 0.82
23 7 0.17
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.34
Consensus pattern (21 bp):
ATACAACTTTTTACAAATTGG
Found at i:8756107 original size:19 final size:19
Alignment explanation
Indices: 8756083--8756131 Score: 98
Period size: 19 Copynumber: 2.6 Consensus size: 19
8756073 ACTTGGTTTT
8756083 CAAATTGGATACAACTTTA
1 CAAATTGGATACAACTTTA
8756102 CAAATTGGATACAACTTTA
1 CAAATTGGATACAACTTTA
8756121 CAAATTGGATA
1 CAAATTGGATA
8756132 AAGCTTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.31
Consensus pattern (19 bp):
CAAATTGGATACAACTTTA
Found at i:8756698 original size:20 final size:19
Alignment explanation
Indices: 8756663--8756704 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
8756653 ATTTTGTATG
*
8756663 AAAAAAAAAGGTGAAAGGA
1 AAAAAAAAAGGTGAAAAGA
8756682 AAAAGAAAAAGAG-GAAAAGA
1 AAAA-AAAAAG-GTGAAAAGA
8756702 AAA
1 AAA
8756705 TGTTACCTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 4 0.20
20 15 0.75
21 1 0.05
ACGTcount: A:0.74, C:0.00, G:0.24, T:0.02
Consensus pattern (19 bp):
AAAAAAAAAGGTGAAAAGA
Found at i:8758057 original size:21 final size:22
Alignment explanation
Indices: 8758022--8758069 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
8758012 AGGTGTCATG
8758022 TTAATTAATATTTATATACTTTT
1 TTAATTAATATTTATATA-TTTT
*
8758045 TTAA-TAA-ATTTATTTA-TTT
1 TTAATTAATATTTATATATTTT
8758064 TTAATT
1 TTAATT
8758070 TAAGAATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
19 7 0.30
20 1 0.04
21 8 0.35
22 3 0.13
23 4 0.17
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.62
Consensus pattern (22 bp):
TTAATTAATATTTATATATTTT
Found at i:8759723 original size:49 final size:50
Alignment explanation
Indices: 8759670--8759772 Score: 190
Period size: 49 Copynumber: 2.1 Consensus size: 50
8759660 TTATTATACT
*
8759670 TATTATTAAATTTTTAAAAATCATTATAAATATTGTAATGTTAT-TGCAA
1 TATTATTAAATTTTTAAAAATCATTATAAATATTGCAATGTTATATGCAA
8759719 TATTATTAAATTTTTAAAAATCATTATAAATATTGCAATGTTATATGCAA
1 TATTATTAAATTTTTAAAAATCATTATAAATATTGCAATGTTATATGCAA
8759769 TATT
1 TATT
8759773 CATTTTCTCA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
49 43 0.83
50 9 0.17
ACGTcount: A:0.43, C:0.05, G:0.06, T:0.47
Consensus pattern (50 bp):
TATTATTAAATTTTTAAAAATCATTATAAATATTGCAATGTTATATGCAA
Found at i:8764533 original size:21 final size:21
Alignment explanation
Indices: 8764507--8764547 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8764497 AGACGAGCAA
* *
8764507 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
8764528 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
8764548 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:8768875 original size:47 final size:47
Alignment explanation
Indices: 8768814--8768912 Score: 180
Period size: 47 Copynumber: 2.1 Consensus size: 47
8768804 TCAAAAAAAG
*
8768814 AAAAATGAAGACCAAATAAATAGAAAAAGCAATCAAAATTCAAAACT
1 AAAAATGAAAACCAAATAAATAGAAAAAGCAATCAAAATTCAAAACT
8768861 AAAAATGAAAACCAAATAAATAGAAAAAGCAATCAAAATTCAAAACT
1 AAAAATGAAAACCAAATAAATAGAAAAAGCAATCAAAATTCAAAACT
*
8768908 CAAAA
1 AAAAA
8768913 GCAATAGAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 50 1.00
ACGTcount: A:0.66, C:0.13, G:0.07, T:0.14
Consensus pattern (47 bp):
AAAAATGAAAACCAAATAAATAGAAAAAGCAATCAAAATTCAAAACT
Found at i:8769182 original size:17 final size:16
Alignment explanation
Indices: 8769156--8769191 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
8769146 CCAAGAATTT
*
8769156 GATAGAGTTTTGAGAG
1 GATAGAGTTTTAAGAG
8769172 GATATGAGTTTTAAGAG
1 GATA-GAGTTTTAAGAG
8769189 GAT
1 GAT
8769192 GATAGACTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (16 bp):
GATAGAGTTTTAAGAG
Found at i:8769411 original size:50 final size:50
Alignment explanation
Indices: 8769336--8769431 Score: 183
Period size: 50 Copynumber: 1.9 Consensus size: 50
8769326 GGACAGCTGC
8769336 CATGCATTTACTCCTAGCCAGCATATTTCATTTTCATTTTCCTTTAATCT
1 CATGCATTTACTCCTAGCCAGCATATTTCATTTTCATTTTCCTTTAATCT
*
8769386 CATGCATTTACTCCTAGCCAGCATATTTCATTTTTATTTTCCTTTA
1 CATGCATTTACTCCTAGCCAGCATATTTCATTTTCATTTTCCTTTA
8769432 CAGGTAGTAG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 45 1.00
ACGTcount: A:0.22, C:0.25, G:0.06, T:0.47
Consensus pattern (50 bp):
CATGCATTTACTCCTAGCCAGCATATTTCATTTTCATTTTCCTTTAATCT
Found at i:8770611 original size:7 final size:7
Alignment explanation
Indices: 8770601--8770665 Score: 51
Period size: 7 Copynumber: 8.9 Consensus size: 7
8770591 TATAATGATA
8770601 ATTATTT
1 ATTATTT
8770608 ATTATTT
1 ATTATTT
8770615 ATT-TTT
1 ATTATTT
8770621 ATTATTTT
1 ATTA-TTT
**
8770629 AAAATTT
1 ATTATTT
*
8770636 CATAACTTT
1 -ATTA-TTT
*
8770645 CATAATTT
1 -ATTATTT
8770653 ATTATTT
1 ATTATTT
8770660 ATTATT
1 ATTATT
8770666 ATGTATGGGT
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
6 6 0.12
7 25 0.50
8 11 0.22
9 8 0.16
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (7 bp):
ATTATTT
Found at i:8774251 original size:26 final size:26
Alignment explanation
Indices: 8774215--8774266 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
8774205 GATCTTCCTC
8774215 GTCATTCCACTAATTGGTAAAAACTA
1 GTCATTCCACTAATTGGTAAAAACTA
8774241 GTCATTCCACTAATTGGTAAAAACTA
1 GTCATTCCACTAATTGGTAAAAACTA
8774267 AATCGCACCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (26 bp):
GTCATTCCACTAATTGGTAAAAACTA
Found at i:8774277 original size:27 final size:26
Alignment explanation
Indices: 8774221--8774279 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
8774211 CCTCGTCATT
* **
8774221 CCACTAATTGGTAAAAACTAGTCATT
1 CCACTAATTGGTAAAAACTAATCACA
*
8774247 CCACTAATTGGTAAAAACTAAATCGCA
1 CCACTAATTGGTAAAAACT-AATCACA
8774274 CCACTA
1 CCACTA
8774280 CTATTATTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 19 0.68
27 9 0.32
ACGTcount: A:0.41, C:0.24, G:0.10, T:0.25
Consensus pattern (26 bp):
CCACTAATTGGTAAAAACTAATCACA
Found at i:8776911 original size:78 final size:78
Alignment explanation
Indices: 8776819--8776971 Score: 288
Period size: 78 Copynumber: 2.0 Consensus size: 78
8776809 ATATGAAAAA
8776819 ACCAAAATCAAATCGAATTCACTCCTAATATAGAGAAGACCGATGCCTATGATGTTCTTTTTGTA
1 ACCAAAATCAAATCGAATTCACTCCTAATATAGAGAAGACCGATGCCTATGATGTTCTTTTTGTA
8776884 TTTCACTATGATT
66 TTTCACTATGATT
* *
8776897 ACCAAAATCAAATCGAATTCACTCCTAATATAGAGAAGGCCGATGCCTGTGATGTTCTTTTTGTA
1 ACCAAAATCAAATCGAATTCACTCCTAATATAGAGAAGACCGATGCCTATGATGTTCTTTTTGTA
8776962 TTTCACTATG
66 TTTCACTATG
8776972 GTTAAGTTAA
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
78 73 1.00
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (78 bp):
ACCAAAATCAAATCGAATTCACTCCTAATATAGAGAAGACCGATGCCTATGATGTTCTTTTTGTA
TTTCACTATGATT
Found at i:8780734 original size:9 final size:9
Alignment explanation
Indices: 8780722--8780750 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
8780712 TTTTTTTGTC
8780722 TTTATTTAT
1 TTTATTTAT
8780731 TTTATTTAT
1 TTTATTTAT
8780740 TTTATTTAT
1 TTTATTTAT
8780749 TT
1 TT
8780751 ATTATTATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTATTTAT
Found at i:8780740 original size:13 final size:13
Alignment explanation
Indices: 8780722--8780764 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
8780712 TTTTTTTGTC
8780722 TTTA-TTTATTTTA
1 TTTATTTTA-TTTA
8780735 TTTATTTTATTTA
1 TTTATTTTATTTA
*
8780748 TTTATTATTATTAA
1 TTTATT-TTATTTA
8780762 TTT
1 TTT
8780765 TAAAATTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 14 0.52
14 13 0.48
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:8780814 original size:34 final size:34
Alignment explanation
Indices: 8780757--8780821 Score: 87
Period size: 35 Copynumber: 1.9 Consensus size: 34
8780747 ATTTATTATT
**
8780757 ATTAATTTTAAAATTTTTGAAATATATATTTTGAA
1 ATTAATTTTAAAAAATTTGAAATAT-TATTTTGAA
*
8780792 ATTATTTTTAAAAAATTT-AAATATTATTTT
1 ATTAATTTTAAAAAATTTGAAATATTATTTT
8780822 TTTAATATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
33 6 0.22
34 6 0.22
35 15 0.56
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (34 bp):
ATTAATTTTAAAAAATTTGAAATATTATTTTGAA
Found at i:8780817 original size:22 final size:22
Alignment explanation
Indices: 8780792--8780838 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
8780782 ATATTTTGAA
8780792 ATTATTTTTAAAAAATTTAAAT
1 ATTATTTTTAAAAAATTTAAAT
** *
8780814 ATTATTTTTTTAATATTTAAAT
1 ATTATTTTTAAAAAATTTAAAT
8780836 ATT
1 ATT
8780839 TTAAACTTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
ATTATTTTTAAAAAATTTAAAT
Found at i:8780819 original size:66 final size:64
Alignment explanation
Indices: 8780749--8780935 Score: 173
Period size: 66 Copynumber: 2.8 Consensus size: 64
8780739 TTTTATTTAT
8780749 TTATTATTATTAATTTTAAAAT-TTTTGAAATATATATTTTGAAATTATTTTTAAAAAATTTAAA
1 TTATT-TTATTAATTTTAAAATATTTT-AAAT-TATATTTTGAAATTATTTTTAAAAAATTTAAA
8780813 TA
63 TA
* * ** * *
8780815 TTATTTTTTTAATATTT-AAATATTTTAAACTT-TCAAATTTGTTATTAGTTTTATAATAATTTA
1 TTATTTTATTAAT-TTTAAAATATTTTAAA-TTAT--ATTTTGAAATTATTTTTA-AAAAATTTA
8780878 AATA
61 AATA
* ** * *
8780882 TTATTTAATTTGTTTTATAATATTTTAAATTATGATTTTTAAATTATTTTTAAA
1 TTATTTTATTAATTTTAAAATATTTTAAATTAT-ATTTTGAAATTATTTTTAAA
8780936 GATATTATGC
Statistics
Matches: 96, Mismatches: 17, Indels: 17
0.74 0.13 0.13
Matches are distributed among these distances:
64 1 0.01
65 17 0.18
66 45 0.47
67 33 0.34
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.57
Consensus pattern (64 bp):
TTATTTTATTAATTTTAAAATATTTTAAATTATATTTTGAAATTATTTTTAAAAAATTTAAATA
Found at i:8781169 original size:19 final size:20
Alignment explanation
Indices: 8781147--8781190 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
8781137 AAATAAAAAA
*
8781147 TATTTGTTAAAAAA-AGATT
1 TATTTGTTAAAAAATAAATT
8781166 TATTTGTTAAAAAATAAATT
1 TATTTGTTAAAAAATAAATT
8781186 TATTT
1 TATTT
8781191 AAAAATATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (20 bp):
TATTTGTTAAAAAATAAATT
Found at i:8781178 original size:20 final size:19
Alignment explanation
Indices: 8781147--8781190 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
8781137 AAATAAAAAA
8781147 TATTTGTTAAAAA-AAGATT
1 TATTTGTTAAAAATAA-ATT
8781166 TATTTGTTAAAAAATAAATT
1 TATTTGTT-AAAAATAAATT
8781186 TATTT
1 TATTT
8781191 AAAAATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.35
20 13 0.57
21 2 0.09
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (19 bp):
TATTTGTTAAAAATAAATT
Found at i:8781186 original size:16 final size:16
Alignment explanation
Indices: 8781167--8781215 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
8781157 AAAAAGATTT
*
8781167 ATTTGTTAAAAAATAA
1 ATTTATTAAAAAATAA
* *
8781183 ATTTATTTAAAAATAT
1 ATTTATTAAAAAATAA
* *
8781199 ATATATTAAAAAGTAA
1 ATTTATTAAAAAATAA
8781215 A
1 A
8781216 AATTAAAATT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (16 bp):
ATTTATTAAAAAATAA
Found at i:8781650 original size:19 final size:20
Alignment explanation
Indices: 8781628--8781671 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
8781618 AAATAAAAAA
*
8781628 TATTTGTTAAAAAA-AGATT
1 TATTTGTTAAAAAATAAATT
8781647 TATTTGTTAAAAAATAAATT
1 TATTTGTTAAAAAATAAATT
8781667 TATTT
1 TATTT
8781672 AAAAATATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (20 bp):
TATTTGTTAAAAAATAAATT
Found at i:8781659 original size:20 final size:19
Alignment explanation
Indices: 8781628--8781671 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
8781618 AAATAAAAAA
8781628 TATTTGTTAAAAA-AAGATT
1 TATTTGTTAAAAATAA-ATT
8781647 TATTTGTTAAAAAATAAATT
1 TATTTGTT-AAAAATAAATT
8781667 TATTT
1 TATTT
8781672 AAAAATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.35
20 13 0.57
21 2 0.09
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (19 bp):
TATTTGTTAAAAATAAATT
Found at i:8781667 original size:16 final size:16
Alignment explanation
Indices: 8781648--8781696 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
8781638 AAAAAGATTT
*
8781648 ATTTGTTAAAAAATAA
1 ATTTATTAAAAAATAA
* *
8781664 ATTTATTTAAAAATAT
1 ATTTATTAAAAAATAA
* *
8781680 ATATATTAAAAAGTAA
1 ATTTATTAAAAAATAA
8781696 A
1 A
8781697 AATTAAAATT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (16 bp):
ATTTATTAAAAAATAA
Found at i:8781721 original size:7 final size:7
Alignment explanation
Indices: 8781711--8781737 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
8781701 AAAATTAAAA
8781711 ATTATAT
1 ATTATAT
8781718 ATTATAT
1 ATTATAT
8781725 ATTATAT
1 ATTATAT
8781732 ATTATA
1 ATTATA
8781738 AAATCACATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
ATTATAT
Found at i:8781721 original size:14 final size:14
Alignment explanation
Indices: 8781693--8781741 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
8781683 TATTAAAAAG
*
8781693 TAAAAATTA-AAAT
1 TAAAAATTATATAT
8781706 TAAAAATTATATAT
1 TAAAAATTATATAT
* *
8781720 TATATATTATATAT
1 TAAAAATTATATAT
8781734 TATAAAAT
1 TA-AAAAT
8781742 CACATCATGT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
13 9 0.31
14 17 0.59
15 3 0.10
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
TAAAAATTATATAT
Found at i:8782000 original size:481 final size:474
Alignment explanation
Indices: 8780872--8782001 Score: 1312
Period size: 480 Copynumber: 2.3 Consensus size: 474
8780862 GTTTTATAAT
* * ** * * * * *
8780872 AATTTAAATATTATTTAATTTGTTTTATAATATTTTAAATTATGATTTTTAAATTATTTTTAAAG
1 AATTT-AATATTATTTAATGTGATACATAATATTATAAATTATGATATATAAATCATTATTAAAG
* ** * **** *
8780937 ATATTATGCTTTTTAATAAAAATAATTTGTAAATTTTAGGTCATTTTCGTGTTTAATTAAAAAAT
65 ATATTCTGC---TTAATAAAAATAATCGGTAAA-TGTAGGTCATTTTAAAATTAAATTAAAAAAT
** ***** *
8781002 TAATTATTTTGATAATAAATTAAATTTTTTGTGTTATTTTTATAAAAAAGTCAAGATATTCAAAC
126 TAA-TATTAAGATAATAAATTAAAAACAATATGTTATTTTTATAAAAAAGTCAAGATATTCAAAC
8781067 CATTTTTAAATTCTATTTAAAAGTTAAAAAATAGTATTTTAATTAAAAAAGTGAAATTTGATTAA
190 CATTTTTAAATTCTATTTAAAAGTTAAAAAATAGTATTTTAATTAAAAAAGTGAAATTTGATTAA
8781132 TTAGAAAATAAAAAATATTTGTTAAAAAAAGATTTATTTGTTAAAAAATAAATTTATTTAAAAAT
255 TTAGAAAATAAAAAATATTTGTTAAAAAAAGATTTATTTGTTAAAAAATAAATTTATTTAAAAAT
8781197 ATATATATTAAAAAGTAAAAATTAAAATTAAAAATTATATATTATATATTATAAAATCACATCAT
320 ATATATATTAAAAAGTAAAAATTAAAATTAAAAATTATATATTATATATTATAAAATCACATCAT
8781262 GTCAGTGATGTGATAACACAAAATAATATGTTATTTGAAAAATAACTATTATTGTAATGAGATAC
385 GTCAGTGATGTGATAACACAAAATAATATGTTATTTGAAAAATAACTATTATTGTAATGAGATAC
8781327 ATGTTCTATTAGGTATAAGTATTTA
450 ATGTTCTATTAGGTATAAGTATTTA
* * ** * * * * *
8781352 AATTTAAATATTATTTAATTTGTTTTATAATATTTTAAATTATGATTTTTAAATTATTTTTAAAG
1 AATTT-AATATTATTTAATGTGATACATAATATTATAAATTATGATATATAAATCATTATTAAAG
** * **** *
8781417 ATATTCTGCTTTTTAATAAAAATAATTTGTAAATTTTAGGTCATTTTCGTGTTTAATTAAAAAAT
65 ATATTCTGC---TTAATAAAAATAATCGGTAAA-TGTAGGTCATTTTAAAATTAAATTAAAAAAT
** ***** *
8781482 TAATTATTTTGATAATAAATTAAATTTTTTGTGTTATTTTTATAAAAAAGTCAAGATATTCAAAC
126 TAA-TATTAAGATAATAAATTAAAAACAATATGTTATTTTTATAAAAAAGTCAAGATATTCAAAC
8781547 CATTTTTTAAATTCTATTTAAAAGTTAAAAAATAGTATTTTAATTAAAAAAGTGAAATTTGATTA
190 CA-TTTTTAAATTCTATTTAAAAGTTAAAAAATAGTATTTTAATTAAAAAAGTGAAATTTGATTA
8781612 ATTAGAAAATAAAAAATATTTGTTAAAAAAAGATTTATTTGTTAAAAAATAAATTTATTTAAAAA
254 ATTAGAAAATAAAAAATATTTGTTAAAAAAAGATTTATTTGTTAAAAAATAAATTTATTTAAAAA
8781677 TATATATATTAAAAAGTAAAAATTAAAATTAAAAATTATATATTATATATTATATATTATAAAAT
319 TATATATATTAAAAAGTAAAAATTAAAATT---AA--A-A-ATTATATATTATATATTATAAAAT
8781742 CACATCATGTCAGTGATGTGATAACACAAAATAATATGTTATTTGAAAAATAACTATTATTGTAA
377 CACATCATGTCAGTGATGTGATAACACAAAATAATATGTTATTTGAAAAATAACTATTATTGTAA
8781807 TGAGATACATGTTCTATTAGGTATAAGTATTTA
442 TGAGATACATGTTCTATTAGGTATAAGTATTTA
* * * ** * *
8781840 AATTT-TTGTTTTTGTAATGTGATACATGCGT-GTATATATATAT-ATATATATAATCA-TATTA
1 AATTTAATATTATT-TAATGTGATACAT-AATATTATAAAT-TATGATATATA-AATCATTATTA
** ** * *
8781901 GTGA-A-TCTGC-TAATACATACTTCATCCGGATAAA-GTATG-CATTATTAAAATTAAATTAAA
62 AAGATATTCTGCTTAATA-A-AAATAAT-CGG-TAAATGTAGGTCATT-TTAAAATTAAATTAAA
*
8781961 ATATTAA-A-TAAGA-AATAAAATTATAAAACAATATGTTATTT
122 AAATTAATATTAAGATAAT-AAATTA-AAAACAATATGTTATTT
8782002 AGAAAATAAC
Statistics
Matches: 591, Mismatches: 40, Indels: 37
0.88 0.06 0.06
Matches are distributed among these distances:
479 3 0.01
480 205 0.35
481 174 0.29
482 5 0.01
483 24 0.04
484 3 0.01
485 9 0.02
486 7 0.01
487 26 0.04
488 135 0.23
ACGTcount: A:0.45, C:0.04, G:0.08, T:0.43
Consensus pattern (474 bp):
AATTTAATATTATTTAATGTGATACATAATATTATAAATTATGATATATAAATCATTATTAAAGA
TATTCTGCTTAATAAAAATAATCGGTAAATGTAGGTCATTTTAAAATTAAATTAAAAAATTAATA
TTAAGATAATAAATTAAAAACAATATGTTATTTTTATAAAAAAGTCAAGATATTCAAACCATTTT
TAAATTCTATTTAAAAGTTAAAAAATAGTATTTTAATTAAAAAAGTGAAATTTGATTAATTAGAA
AATAAAAAATATTTGTTAAAAAAAGATTTATTTGTTAAAAAATAAATTTATTTAAAAATATATAT
ATTAAAAAGTAAAAATTAAAATTAAAAATTATATATTATATATTATAAAATCACATCATGTCAGT
GATGTGATAACACAAAATAATATGTTATTTGAAAAATAACTATTATTGTAATGAGATACATGTTC
TATTAGGTATAAGTATTTA
Done.