Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 30 of 250
Found at i:8782381 original size:215 final size:213
Alignment explanation
Indices: 8781769--8782382 Score: 1014
Period size: 213 Copynumber: 2.9 Consensus size: 213
8781759 GTGATAACAC
*
8781769 AAAATAATATGTTATTTGAAAAATAACTATTATTGTAATGAGATACATGTTCTATTAGGTATAAG
1 AAAACAATATGTTATTTG-AAAATAACTATTATTGTAATGAGATACATGTTCTATTAGGTATAAG
* * *
8781834 TATTTAAATTTTTGTTTTTGTAATGTGATACATGCGTGTATATATATATATATATATAATCATAT
65 TATTTAAA-TTTTGTTTTTGTAATGTGATACATGAGT-AATATCTATATATATATATAATCATAT
* *
8781899 TAGTGAATCTGCTAATACATACTTCATCCGGATAAAGTATGCATTATTAAAATTAAATTAAAATA
128 TAGTGAATCTGCTAATACATACTTCATCCAGATAAAGTATGCATTATTAAAATTAAACTAAAATA
*
8781964 TTAAATAAGAAATAAAATTAT
193 TTAAATAAAAAATAAAATTAT
8781985 AAAACAATATGTTATTTAGAAAATAACTATTATTGTAATGAGATACATGTTCTATTAGGTATAAG
1 AAAACAATATGTTATTT-GAAAATAACTATTATTGTAATGAGATACATGTTCTATTAGGTATAAG
* * *
8782050 TATTTAAATTTTTTTTTTGTAATGTGATACATGAATAA-ATCTATATATATATGTAATCATATTA
65 TATTTAAATTTTGTTTTTGTAATGTGATACATGAGTAATATCTATATATATATATAATCATATTA
**
8782114 GTGAATCTATTAATACATACTTCATCCAGATAAAGTATGCATTATTAAAATTAAACTAAAATATT
130 GTGAATCTGCTAATACATACTTCATCCAGATAAAGTATGCATTATTAAAATTAAACTAAAATATT
8782179 AAATAAAAAATAAAATTAT
195 AAATAAAAAATAAAATTAT
* *
8782198 AAAACAATATGTTATTTGGAAATAACTATTATTGTAATGAGATACATGTTTTATTAGGTATAAGT
1 AAAACAATATGTTATTTGAAAATAACTATTATTGTAATGAGATACATGTTCTATTAGGTATAAGT
*
8782263 ATTTAAATTTTAGTTTTTGTAATATGATACATGAGTAAATATCTATATATATATATAATCATATT
66 ATTTAAATTTT-GTTTTTGTAATGTGATACATGAGT-AATATCTATATATATATATAATCATATT
* *
8782328 AGTGAATGTGCTAATACATACTTCATTCAGATAAAGTATGCATTATTAAAATTAA
129 AGTGAATCTGCTAATACATACTTCATCCAGATAAAGTATGCATTATTAAAATTAA
8782383 TGGTTTGTTT
Statistics
Matches: 372, Mismatches: 22, Indels: 9
0.92 0.05 0.02
Matches are distributed among these distances:
212 57 0.15
213 141 0.38
214 3 0.01
215 100 0.27
216 70 0.19
217 1 0.00
ACGTcount: A:0.43, C:0.07, G:0.11, T:0.40
Consensus pattern (213 bp):
AAAACAATATGTTATTTGAAAATAACTATTATTGTAATGAGATACATGTTCTATTAGGTATAAGT
ATTTAAATTTTGTTTTTGTAATGTGATACATGAGTAATATCTATATATATATATAATCATATTAG
TGAATCTGCTAATACATACTTCATCCAGATAAAGTATGCATTATTAAAATTAAACTAAAATATTA
AATAAAAAATAAAATTAT
Found at i:8787469 original size:3 final size:3
Alignment explanation
Indices: 8787463--8787514 Score: 86
Period size: 3 Copynumber: 17.3 Consensus size: 3
8787453 TGCTACTGCC
* *
8787463 TCT TCT TCT TCT TCT TCT TCT TCT TCT TTT TCT TCT TCT TCT TCT TTT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
8787511 TCT T
1 TCT T
8787515 ATTTATTAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (3 bp):
TCT
Found at i:8789003 original size:47 final size:46
Alignment explanation
Indices: 8788844--8789198 Score: 242
Period size: 47 Copynumber: 7.6 Consensus size: 46
8788834 CTGCCAATGC
* * ** * * *
8788844 CATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGCGTGCTGACG
1 CATGTCCCAGACAT-GTCTTACACTGGC-ATCATCTGTGAG-GCCGATG
* * * *
8788893 CATGTCCCAGACATGTCTTACACTAGCA-CAACTCTTA-GCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCATCATCTGTGAGGCCGATG
* *
8788937 CGTGTCCCAGACACGTCTTACACTGGCTATC-TCTGTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGC-ATCATCTGT-GAGGCCGATG
* * * * * *
8788984 CATGTCCCAAACATATCTTAAACTGGCACTTATCTCT-ATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCA-TCATCTGTGAGGCCGATG
* * *
8789030 TCATGTCCCAGGCATGGTCTTACACTGGCTATCAT-AGT-ATGGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGC-ATCATCTGTGA-GGCCGATG
* * * * *
8789078 CATATCCCAGACATGTCTTACACTAGCCCTCGTCTG-GATGCCGATG
1 CATGTCCCAGACATGTCTTACACT-GGCATCATCTGTGAGGCCGATG
* * *
8789124 CCATGTCCCAGACATGGTCTTACACTGGC-TC-TCATAATGTGGCCGAAG
1 -CATGTCCCAGACAT-GTCTTACACTGGCATCATC-T-GTGAGGCCGATG
8789172 CATGTCCCAGACATGTCTTACACTGGC
1 CATGTCCCAGACATGTCTTACACTGGC
8789199 GCACAAATCA
Statistics
Matches: 241, Mismatches: 47, Indels: 39
0.74 0.14 0.12
Matches are distributed among these distances:
44 29 0.12
45 6 0.02
46 49 0.20
47 89 0.37
48 53 0.22
49 15 0.06
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCATCATCTGTGAGGCCGATG
Found at i:8789119 original size:94 final size:92
Alignment explanation
Indices: 8788835--8789195 Score: 356
Period size: 94 Copynumber: 3.9 Consensus size: 92
8788825 TGGGATATAC
* * * * *
8788835 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-TACGCGTGCTGACGCATGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTA--TG-GCCGATGCATGTC
**
8788899 CCAGACATGTCTTACACTAGCACAACTCTTA
63 CCAGACATGTCTTACACTAGC-CCTCTCTTA
* * *
8788930 -GCCGATG-CGTGTCCCAGACA-CGTCTTACACTGGCTATC-TCTGTCGA-GGCCGATGCATGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGT--ATGGCCGATGCATGTC
* * * * * *
8788990 CCAAACATATCTTAAACTGGCACTTATCTCTA
63 CCAGACATGTCTTACACTAGC-CCTCTCT-TA
* * * *
8789022 TGCCGATGTCATGTCCCAGGCATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATATCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCA
*
8789087 GACATGTCTTACACTAGCCCTCGTCTGGA
66 GACATGTCTTACACTAGCCCTC-TCT-TA
* * * *
8789116 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCA
8789181 GACATGTCTTACACT
66 GACATGTCTTACACT
8789196 GGCGCACAAA
Statistics
Matches: 219, Mismatches: 36, Indels: 23
0.79 0.13 0.08
Matches are distributed among these distances:
91 34 0.16
92 19 0.09
93 23 0.11
94 122 0.56
95 20 0.09
96 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (92 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCA
GACATGTCTTACACTAGCCCTCTCTTA
Found at i:8790525 original size:30 final size:31
Alignment explanation
Indices: 8790459--8790527 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
8790449 ACTATTAGTC
* *
8790459 AGTGACTGTTTTGTCACTTTTTTATAACGTT
1 AGTGACTGTTTTGTCACTTTTTCATAAAGTT
*
8790490 AGTGACTGTTTTGTTA-TTTTTCA-AAAGTT
1 AGTGACTGTTTTGTCACTTTTTCATAAAGTT
*
8790519 GGGTGACTG
1 -AGTGACTG
8790528 AAATGAAACC
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 5 0.15
30 13 0.39
31 15 0.45
ACGTcount: A:0.20, C:0.10, G:0.22, T:0.48
Consensus pattern (31 bp):
AGTGACTGTTTTGTCACTTTTTCATAAAGTT
Found at i:8798783 original size:21 final size:22
Alignment explanation
Indices: 8798757--8798813 Score: 57
Period size: 21 Copynumber: 2.7 Consensus size: 22
8798747 GTAAGGAGTA
8798757 GCACACGGCCGTGTG-GCAGAG
1 GCACACGGCCGTGTGTGCAGAG
** *
8798778 GCACACACCCATGTGGTGCAGAG
1 GCACACGGCCGTGT-GTGCAGAG
8798801 G--CACGGCCGTGTG
1 GCACACGGCCGTGTG
8798814 ATCAGGTCGT
Statistics
Matches: 28, Mismatches: 6, Indels: 5
0.72 0.15 0.13
Matches are distributed among these distances:
20 1 0.04
21 19 0.68
22 1 0.04
23 7 0.25
ACGTcount: A:0.19, C:0.30, G:0.39, T:0.12
Consensus pattern (22 bp):
GCACACGGCCGTGTGTGCAGAG
Found at i:8804155 original size:19 final size:21
Alignment explanation
Indices: 8804096--8804157 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
8804086 ATTGGGTGGA
*
8804096 TCAACTCTTATGAGCTTCTGT
1 TCAACTCTTACGAGCTTCTGT
*
8804117 TCAACTCTTACGAACTTCTGT
1 TCAACTCTTACGAGCTTCTGT
* *
8804138 TTAGCT-TT-CGAGCTTCTGT
1 TCAACTCTTACGAGCTTCTGT
8804157 T
1 T
8804158 AACGATGTAC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
19 11 0.31
20 2 0.06
21 23 0.64
ACGTcount: A:0.18, C:0.24, G:0.15, T:0.44
Consensus pattern (21 bp):
TCAACTCTTACGAGCTTCTGT
Found at i:8805289 original size:5 final size:5
Alignment explanation
Indices: 8805274--8805303 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
8805264 GTTAATCCAA
8805274 ATTTGT ATTTT ATTTT ATTTT ATTTT ATTT
1 ATTT-T ATTTT ATTTT ATTTT ATTTT ATTT
8805304 CCTATTCTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 20 0.83
6 4 0.17
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (5 bp):
ATTTT
Found at i:8820037 original size:22 final size:22
Alignment explanation
Indices: 8820011--8820053 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
8820001 TAGTTATTTG
8820011 TTTTTTAGTTTAATTTAATTTAA
1 TTTTTTA-TTTAATTTAATTTAA
*
8820034 TTTTTTATTTTATTTAATTT
1 TTTTTTATTTAATTTAATTT
8820054 TTCACATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (22 bp):
TTTTTTATTTAATTTAATTTAA
Found at i:8820043 original size:17 final size:17
Alignment explanation
Indices: 8820023--8820055 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8820013 TTTTAGTTTA
8820023 ATTTAATTTAATTTTTT
1 ATTTAATTTAATTTTTT
*
8820040 ATTTTATTTAATTTTT
1 ATTTAATTTAATTTTT
8820056 CACATAATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (17 bp):
ATTTAATTTAATTTTTT
Found at i:8823861 original size:23 final size:23
Alignment explanation
Indices: 8823835--8823880 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
8823825 AGTACAAAAG
8823835 TTAATTTGGTTGCTGTTAAGTTC
1 TTAATTTGGTTGCTGTTAAGTTC
8823858 TTAATTTGGTTGCTGTTAAGTTC
1 TTAATTTGGTTGCTGTTAAGTTC
8823881 ACATGATTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.17, C:0.09, G:0.22, T:0.52
Consensus pattern (23 bp):
TTAATTTGGTTGCTGTTAAGTTC
Found at i:8823964 original size:21 final size:23
Alignment explanation
Indices: 8823918--8823968 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
8823908 AAGTTTTTTA
8823918 ATTTTAAAAATTTGTAAGTAATT
1 ATTTTAAAAATTTGTAAGTAATT
* *
8823941 ATTTTAAAATTTTGTTA-T-ATT
1 ATTTTAAAAATTTGTAAGTAATT
8823962 ATTTTAA
1 ATTTTAA
8823969 CTTATTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 10 0.38
22 1 0.04
23 15 0.58
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (23 bp):
ATTTTAAAAATTTGTAAGTAATT
Found at i:8826039 original size:26 final size:26
Alignment explanation
Indices: 8826003--8826054 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
8825993 CTACAAGAAG
8826003 AAGAAACCCTTCAATTAGGAAGCACT
1 AAGAAACCCTTCAATTAGGAAGCACT
8826029 AAGAAACCCTTCAATTAGGAAGCACT
1 AAGAAACCCTTCAATTAGGAAGCACT
8826055 GAAACAAGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.23, G:0.15, T:0.19
Consensus pattern (26 bp):
AAGAAACCCTTCAATTAGGAAGCACT
Found at i:8829133 original size:25 final size:25
Alignment explanation
Indices: 8829095--8829143 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
8829085 ATATAAGTTC
8829095 AAAAAATGAAGTTGAACAAAAAAAT
1 AAAAAATGAAGTTGAACAAAAAAAT
* *
8829120 AAAAAATGAGGTTGAATAAAAAAA
1 AAAAAATGAAGTTGAACAAAAAAA
8829144 AAGACCTGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.67, C:0.02, G:0.14, T:0.16
Consensus pattern (25 bp):
AAAAAATGAAGTTGAACAAAAAAAT
Found at i:8830033 original size:29 final size:29
Alignment explanation
Indices: 8829994--8830066 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
8829984 ACAATCACTA
*
8829994 TTCTCTCATTTTCT-GTCAAAAAATTTTTC
1 TTCTCTCATTTTCTCCT-AAAAAATTTTTC
* *
8830023 TTCTCTCATTTTCTCCTAACATATTTTTC
1 TTCTCTCATTTTCTCCTAAAAAATTTTTC
*
8830052 TTCTTTCATTTTCTC
1 TTCTCTCATTTTCTC
8830067 TCCAACATAA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 38 0.97
30 1 0.03
ACGTcount: A:0.18, C:0.25, G:0.01, T:0.56
Consensus pattern (29 bp):
TTCTCTCATTTTCTCCTAAAAAATTTTTC
Found at i:8844057 original size:16 final size:16
Alignment explanation
Indices: 8844046--8844105 Score: 50
Period size: 16 Copynumber: 3.7 Consensus size: 16
8844036 TTAATTACTT
8844046 TAATATTAAATTAATA
1 TAATATTAAATTAATA
* * *
8844062 TAATATT-TATCAAGA
1 TAATATTAAATTAATA
* *
8844077 TAAATATTAGATTAAATT
1 T-AATATTAAATT-AATA
8844095 TAATATTAAAT
1 TAATATTAAAT
8844106 CTTATTAAAT
Statistics
Matches: 33, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
15 6 0.18
16 13 0.39
17 11 0.33
18 3 0.09
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (16 bp):
TAATATTAAATTAATA
Found at i:8844118 original size:59 final size:58
Alignment explanation
Indices: 8844049--8844164 Score: 164
Period size: 59 Copynumber: 2.0 Consensus size: 58
8844039 ATTACTTTAA
* *
8844049 TATTAAATTAATATAATATTTATC-A-AGATAAATATTAGATTAAATTTAATATTAAATCT
1 TATTAAATTAATAGAATATTTATCAAGAGATAAA-ATTAAATTAAA-TTAA-ATTAAATCT
8844108 TATTAAATTAATAGAATATTTATCTAAGAGATAAAATTAAATTAAATTAAATTAAAT
1 TATTAAATTAATAGAATATTTATC-AAGAGATAAAATTAAATTAAATTAAATTAAAT
8844165 TTAAGATTAA
Statistics
Matches: 52, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
59 30 0.58
60 4 0.08
61 11 0.21
62 7 0.13
ACGTcount: A:0.52, C:0.03, G:0.04, T:0.41
Consensus pattern (58 bp):
TATTAAATTAATAGAATATTTATCAAGAGATAAAATTAAATTAAATTAAATTAAATCT
Found at i:8844151 original size:5 final size:5
Alignment explanation
Indices: 8844141--8844175 Score: 52
Period size: 5 Copynumber: 6.6 Consensus size: 5
8844131 CTAAGAGATA
8844141 AAATT AAATT AAATT AAATT AAATTT AAGATT AAA
1 AAATT AAATT AAATT AAATT AAA-TT AA-ATT AAA
8844176 ATAATCACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 19 0.68
6 8 0.29
7 1 0.04
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (5 bp):
AAATT
Found at i:8844161 original size:15 final size:17
Alignment explanation
Indices: 8844136--8844199 Score: 60
Period size: 20 Copynumber: 3.7 Consensus size: 17
8844126 TTTATCTAAG
*
8844136 AGATAAAATTAAA-TTA
1 AGATTAAATTAAATTTA
8844152 A-ATTAAATTAAATTTA
1 AGATTAAATTAAATTTA
*
8844168 AGATTAAAATAATCACTTTA
1 AGATTAAATTAA--A-TTTA
*
8844188 ATATTAAATTAA
1 AGATTAAATTAA
8844200 TAAAATACTA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
15 10 0.26
16 5 0.13
17 9 0.23
19 1 0.03
20 14 0.36
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (17 bp):
AGATTAAATTAAATTTA
Found at i:8845818 original size:15 final size:14
Alignment explanation
Indices: 8845798--8845836 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
8845788 ATGCATGCAC
8845798 AATATGAAAGATAGA
1 AATATGAAAGATA-A
*
8845813 AATATGAAAGGTAA
1 AATATGAAAGATAA
8845827 AATAGTGAAA
1 AATA-TGAAA
8845837 TGTGAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 5 0.23
15 17 0.77
ACGTcount: A:0.59, C:0.00, G:0.21, T:0.21
Consensus pattern (14 bp):
AATATGAAAGATAA
Found at i:8847428 original size:20 final size:21
Alignment explanation
Indices: 8847399--8847446 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
8847389 AAATAGTGAG
8847399 AATT-TATTTTCT-AAATATA-
1 AATTCTATTTTCTGAAATA-AC
8847418 AATTCTATTTTCTGAAATAAC
1 AATTCTATTTTCTGAAATAAC
8847439 AATTCTAT
1 AATTCTAT
8847447 CGGTTTCTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
19 4 0.15
20 9 0.35
21 13 0.50
ACGTcount: A:0.40, C:0.10, G:0.02, T:0.48
Consensus pattern (21 bp):
AATTCTATTTTCTGAAATAAC
Found at i:8848625 original size:30 final size:30
Alignment explanation
Indices: 8848589--8848650 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
8848579 AGGAAAAAGG
8848589 AAAGTTACGGAATAGTCCCTAAACTTCTGC
1 AAAGTTACGGAATAGTCCCTAAACTTCTGC
* *
8848619 AAAGTTATGGAATAGTCCCTGAACTTCTGC
1 AAAGTTACGGAATAGTCCCTAAACTTCTGC
8848649 AA
1 AA
8848651 CTACTACAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (30 bp):
AAAGTTACGGAATAGTCCCTAAACTTCTGC
Found at i:8853489 original size:45 final size:43
Alignment explanation
Indices: 8853424--8853570 Score: 118
Period size: 45 Copynumber: 3.3 Consensus size: 43
8853414 AAAACTATGA
** *
8853424 TTGAAAGATATCGGGACATTATACCTGAAATGAAAAAGACCATAG
1 TTGAAAGATA-CTAGACATTATATC-GAAATGAAAAAGACCATAG
* * * * **
8853469 TTGAAAGATATTATAGCATTAAATCGAAA-CAGGTAAGACTC-TAG
1 TTGAAAGATACTAGA-CATTATATCGAAATGA-AAAAGAC-CATAG
* *
8853513 TTGAAAGATACTAGACACTATATCGGAAAATGAACAAGACCATAG
1 TTGAAAGATACTAGACATTATATC-G-AAATGAAAAAGACCATAG
8853558 TTGAAAGATACTA
1 TTGAAAGATACTA
8853571 TGGCACCACT
Statistics
Matches: 79, Mismatches: 16, Indels: 14
0.72 0.15 0.13
Matches are distributed among these distances:
43 8 0.10
44 28 0.35
45 42 0.53
46 1 0.01
ACGTcount: A:0.45, C:0.13, G:0.18, T:0.24
Consensus pattern (43 bp):
TTGAAAGATACTAGACATTATATCGAAATGAAAAAGACCATAG
Found at i:8855757 original size:42 final size:43
Alignment explanation
Indices: 8855710--8855791 Score: 107
Period size: 42 Copynumber: 1.9 Consensus size: 43
8855700 TCGAAGAAAG
* *
8855710 AGAAAAAGAGAT-T-TTAGAGAGAGAGAGAA-GAAATAATATGAA
1 AGAAAAAGAAATGTGTT-GAGAG-GAGAGAATGAAAAAATATGAA
8855752 AGAAAAAGAAATGTGTTGAGAGGAGAGAATGAAAAAATAT
1 AGAAAAAGAAATGTGTTGAGAGGAGAGAATGAAAAAATAT
8855792 CTTTTTTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
42 18 0.51
43 15 0.43
44 2 0.06
ACGTcount: A:0.56, C:0.00, G:0.27, T:0.17
Consensus pattern (43 bp):
AGAAAAAGAAATGTGTTGAGAGGAGAGAATGAAAAAATATGAA
Found at i:8875375 original size:15 final size:16
Alignment explanation
Indices: 8875355--8875388 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
8875345 GCAGGTATCG
*
8875355 ATACTTTGTGA-AAGT
1 ATACTTTGTAATAAGT
8875370 ATACTTTGTAATAAGT
1 ATACTTTGTAATAAGT
8875386 ATA
1 ATA
8875389 GATACTTGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.38, C:0.06, G:0.15, T:0.41
Consensus pattern (16 bp):
ATACTTTGTAATAAGT
Found at i:8875395 original size:20 final size:20
Alignment explanation
Indices: 8875370--8875427 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
8875360 TTGTGAAAGT
8875370 ATACTTTGT-AATAAGTATAG
1 ATACTTTGTGAA-AAGTATAG
* *
8875390 ATACTTGGTGCAAAGTATAG
1 ATACTTTGTGAAAAGTATAG
* *
8875410 ATATTTTGTGCAAAGTAT
1 ATACTTTGTGAAAAGTAT
8875428 CGGCACCTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 32 0.97
21 1 0.03
ACGTcount: A:0.36, C:0.07, G:0.19, T:0.38
Consensus pattern (20 bp):
ATACTTTGTGAAAAGTATAG
Found at i:8879652 original size:46 final size:47
Alignment explanation
Indices: 8879544--8879712 Score: 161
Period size: 46 Copynumber: 3.6 Consensus size: 47
8879534 CCACATTATG
*
8879544 AGAGCCAGTGTAAGACCATGTCTGGGACATGACATCAGTATTGAGACA
1 AGAGCCAGTGTAAGA-CATGTCTGGGACATGACATCAGTATCGAGACA
* * * * *
8879592 AGAGCTAGTGTAAGACATGTTTGGGACATG-CATCGGTCTCGAGACGT
1 AGAGCCAGTGTAAGACATGTCTGGGACATGACATCAGTATCGAGAC-A
*
8879639 A-AGCCAGTGTAAGACATGTCTGGGAGATGA-ATCAGCTAT-GAG--A
1 AGAGCCAGTGTAAGACATGTCTGGGACATGACATCAG-TATCGAGACA
* * * *
8879682 TGTGTCAATGTAAGACCATGTCTGGGACATG
1 AGAGCCAGTGTAAGA-CATGTCTGGGACATG
8879713 GCATTGGCAC
Statistics
Matches: 99, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
44 10 0.10
45 14 0.14
46 44 0.44
47 17 0.17
48 14 0.14
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.24
Consensus pattern (47 bp):
AGAGCCAGTGTAAGACATGTCTGGGACATGACATCAGTATCGAGACA
Found at i:8879813 original size:49 final size:49
Alignment explanation
Indices: 8879501--8879914 Score: 276
Period size: 49 Copynumber: 8.7 Consensus size: 49
8879491 TCATATGTGT
* * * *
8879501 GCTAGTGTAAGA-CATGTCTGGGATAT-GCATCGGCCAC-ATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGATA
* * * ** * ** *
8879547 GCCAGTGTAAGACCATGTCTGGGACATGACATCAGTATTGA-GACAAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGATA
* * *
8879595 GCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGTCTCGA-GACG-TAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGAT-A
* * * *
8879641 GCCAGTGTAAGA-CATGTCTGGGAGAT-GAATCAG-CT--ATGA-GAT-
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGATA
* * * * *
8879683 GTGTCAATGTAAGACCATGTCTGGGACATGGCATTGGCAC-GGAT-ATGTAAGA
1 G-CT-AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGATGATG--ATA
*
8879735 GCTAGTGTAAGACCATGTCTGGGATATGGCATCGGCCTCGATGATGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGATA
* * * *
8879784 GTTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCTTCAATGATGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGATA
* * * * *
8879833 -TTCAGTGTAAGACCATGTCTGGGACATGACATC-GACT-TAAGAT-ATGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGAT-A
* *
8879880 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG
8879915 TATTCTACCC
Statistics
Matches: 291, Mismatches: 53, Indels: 46
0.75 0.14 0.12
Matches are distributed among these distances:
42 1 0.00
43 2 0.01
44 11 0.04
45 15 0.05
46 58 0.20
47 59 0.20
48 27 0.09
49 79 0.27
50 33 0.11
51 5 0.02
52 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.25
Consensus pattern (49 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGATA
Found at i:8879854 original size:148 final size:140
Alignment explanation
Indices: 8879591--8879860 Score: 328
Period size: 148 Copynumber: 1.9 Consensus size: 140
8879581 GTATTGAGAC
* *
8879591 AAGAGCTAGTGTAAGACATGTTTGGGACATGCATCGGTCTCGAGACGTAAGCCAGTGTAAGACAT
1 AAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAAGCCAGTGTAAGACAT
* *
8879656 GTCTGGGAGATGAATCAGCTATGAGATGTGTCAATGTAAGACCATGTCTGGGACATGGCATTGGC
66 GTCTGGGACATGAATCAGCTATGAGATATGTCAATGTAAGACCATGTCTGGGACATGGCATTGGC
8879721 ACGGATATGT
131 ACGGATATGT
* * **
8879731 AAGAGCTAGTGTAAGACCATGTCTGGGATATGGCATCGGCCTCGATGATG-ATAGTTAGTGTAAG
1 AAGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGA-GACGTA-AGCCAGTGTAAG
** * *
8879795 ACCATGTCTGGGACATGGCGTCGGCTTCAATGATGATAT-TCAGTGTAAGACCATGTCTGGGACA
62 A-CATGTCTGGGACAT-GAATCAGC-T--ATGA-GATATGTCAATGTAAGACCATGTCTGGGACA
8879859 TG
121 TG
8879861 ACATCGACTT
Statistics
Matches: 108, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
140 16 0.15
141 12 0.11
142 13 0.12
143 14 0.13
144 13 0.12
145 5 0.05
146 1 0.01
148 30 0.28
149 4 0.04
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.26
Consensus pattern (140 bp):
AAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAAGCCAGTGTAAGACAT
GTCTGGGACATGAATCAGCTATGAGATATGTCAATGTAAGACCATGTCTGGGACATGGCATTGGC
ACGGATATGT
Found at i:8879866 original size:98 final size:96
Alignment explanation
Indices: 8879504--8879914 Score: 273
Period size: 94 Copynumber: 4.3 Consensus size: 96
8879494 TATGTGTGCT
* * * **
8879504 AGTGTAAGA-CATGTCTGGGATAT-GCATCGGC--CACATTATGAGAGCCAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTCA-ATGATGATATTCAGTGTAAGACCATGT
* * * *
8879565 CTGGGACATGACATCAGTATTG-AGACAAGAGCT
65 CTGGGACATGACATC-G-ACTGAAGATATGAGCC
* * * **
8879598 AGTGTAAGA-CATGTTTGGGACAT-GCATCGG-TCTCGA-GACG-TAAGCCAGTGTAAGA-CATG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCT-TCAATGATGAT-ATTCAGTGTAAGACCATG
* * * * *
8879657 TCTGGGAGATGA-ATC-AGCT-ATGAGATGTGTC
64 TCTGGGACATGACATCGA-CTGAAGATATGAGCC
* * * * **
8879688 AATGTAAGACCATGTCTGGGACATGGCATTGGC-ACGGAT-ATG-TAAGAGCTAGTGTAAGACCA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTC-AATGATGAT-A-TTC-AGTGTAAGACCA
* * * * **
8879750 TGTCTGGGATATGGCATCGGCCTCGATGATGAT-AGTT
62 TGTCTGGGACATGACATC-GACT-GAAGAT-ATGAGCC
*
8879787 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCTTCAATGATGATATTCAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTCAATGATGATATTCAGTGTAAGACCATGTC
*
8879852 TGGGACATGACATCGACTTAAGATATGAGCC
66 TGGGACATGACATCGACTGAAGATATGAGCC
*
8879883 AGTGTAAGACCATGTTTGGGACATGGCATCGG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG
8879915 TATTCTACCC
Statistics
Matches: 250, Mismatches: 43, Indels: 46
0.74 0.13 0.14
Matches are distributed among these distances:
89 1 0.00
90 14 0.06
91 14 0.06
92 16 0.06
93 16 0.06
94 52 0.21
95 17 0.07
96 40 0.16
97 5 0.02
98 28 0.11
99 39 0.16
100 7 0.03
101 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.25
Consensus pattern (96 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTCAATGATGATATTCAGTGTAAGACCATGTC
TGGGACATGACATCGACTGAAGATATGAGCC
Found at i:8895005 original size:13 final size:13
Alignment explanation
Indices: 8894987--8895013 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8894977 GAAGTAATTG
8894987 CACACGGGCGTGT
1 CACACGGGCGTGT
8895000 CACACGGGCGTGT
1 CACACGGGCGTGT
8895013 C
1 C
8895014 CCTGTCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:8896433 original size:47 final size:45
Alignment explanation
Indices: 8896331--8896455 Score: 139
Period size: 47 Copynumber: 2.7 Consensus size: 45
8896321 TCCCGAGGCT
*
8896331 GATGCATGTCCCAGACATGTCTTACACTAGCACTCTTCTCAATGTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTC-TATCAATGTC
*
8896377 GATGCCATGTCCCAGACATGGTCTTACACTGGC-CATC-AT-AATGTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCAC-TCTATCAATGT---C
*
8896425 GATGCATGTCTCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
8896456 CCACAATAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
45 5 0.07
46 17 0.25
47 28 0.41
48 19 0.28
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACTCTATCAATGTC
Found at i:8896833 original size:30 final size:30
Alignment explanation
Indices: 8896792--8896849 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
8896782 AAATTTACAT
* * *
8896792 CTTTGGTAAAATGACCATTTTGCTCCTAGA
1 CTTTGGCAAAATAACCATTTTGCCCCTAGA
8896822 CTTTGGCAAAATAACCATTTTGCCCCTA
1 CTTTGGCAAAATAACCATTTTGCCCCTA
8896850 TGCCCTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (30 bp):
CTTTGGCAAAATAACCATTTTGCCCCTAGA
Found at i:8897094 original size:36 final size:36
Alignment explanation
Indices: 8897046--8897121 Score: 116
Period size: 36 Copynumber: 2.1 Consensus size: 36
8897036 CAAGACTCAT
* *
8897046 TTTCTTCGATAAAAACTCAACAAAAAACACAAATCC
1 TTTCTTCCATAAAAACCCAACAAAAAACACAAATCC
* *
8897082 TTTCTTCCATAAAAACCCAGCAAACAACACAAATCC
1 TTTCTTCCATAAAAACCCAACAAAAAACACAAATCC
8897118 TTTC
1 TTTC
8897122 ATGGCAAAAC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.45, C:0.29, G:0.03, T:0.24
Consensus pattern (36 bp):
TTTCTTCCATAAAAACCCAACAAAAAACACAAATCC
Found at i:8901264 original size:43 final size:42
Alignment explanation
Indices: 8901196--8901356 Score: 179
Period size: 43 Copynumber: 3.8 Consensus size: 42
8901186 TGGCATCGAC
* *
8901196 TTACGTGTAAGACCACGTCTTGGACGTTGGCATCGTATTTTAT
1 TTAC-TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGAT
*
8901239 TTACCTGTAAGACCACGTCTGGGACGTTGGTATCGTATTTGATT
1 TTA-CTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGA-T
*
8901283 TTA-TGTAAGACC-CTGTCTGGCACAG-TGGCATCGATATTTGA-
1 TTACTGTAAGACCAC-GTCTGGGAC-GTTGGCATCG-TATTTGAT
8901324 TTACATGTAAGACCACGT-TGGGGACGTTGGCAT
1 TTAC-TGTAAGACCACGTCT-GGGACGTTGGCAT
8901357 TGTACAAGCC
Statistics
Matches: 102, Mismatches: 6, Indels: 20
0.80 0.05 0.16
Matches are distributed among these distances:
41 4 0.04
42 26 0.25
43 66 0.65
44 6 0.06
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (42 bp):
TTACTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGAT
Found at i:8902138 original size:22 final size:22
Alignment explanation
Indices: 8902095--8902138 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
8902085 TATATCTTGG
* *
8902095 TATGATTTTGGTTTAGATTTGA
1 TATGATTTTGGTTGAGAATTGA
8902117 TATGA-TTTGGTTGATGAATTGA
1 TATGATTTTGGTTGA-GAATTGA
8902139 GACTGAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (22 bp):
TATGATTTTGGTTGAGAATTGA
Found at i:8911743 original size:42 final size:41
Alignment explanation
Indices: 8911628--8911766 Score: 127
Period size: 42 Copynumber: 3.2 Consensus size: 41
8911618 GTTGGTATTA
* * *
8911628 ATCTGAATTATCGTGTAAGACCGTGTCTAGGACACAGGCATCG
1 ATCTGAATT-TCGTATAAGACCATGTCTGGGACAC-GGCATCG
* * *
8911671 ATTTGAAATTTACGTTTAAGACTATGTCTGGGACATCGGCATCG
1 ATCTG-AATTT-CGTATAAGACCATGTCTGGGACA-CGGCATCG
* *
8911715 TATCTG-ATTTCGTATAAGACCCTGTCTGGGACAGAGGCATCG
1 -ATCTGAATTTCGTATAAGACCATGTCTGGGACA-CGGCATCG
8911757 ATACTGAATT
1 AT-CTGAATT
8911767 ACATGTAAGA
Statistics
Matches: 79, Mismatches: 11, Indels: 12
0.77 0.11 0.12
Matches are distributed among these distances:
41 2 0.03
42 30 0.38
43 12 0.15
44 30 0.38
45 5 0.06
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (41 bp):
ATCTGAATTTCGTATAAGACCATGTCTGGGACACGGCATCG
Found at i:8924441 original size:16 final size:16
Alignment explanation
Indices: 8924422--8924452 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8924412 GGCTTTTAGG
8924422 CATTTCAGCTTTTCAT
1 CATTTCAGCTTTTCAT
*
8924438 CATTTCGGCTTTTCA
1 CATTTCAGCTTTTCA
8924453 GCTTTTGCCG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.26, G:0.10, T:0.48
Consensus pattern (16 bp):
CATTTCAGCTTTTCAT
Found at i:8928565 original size:44 final size:44
Alignment explanation
Indices: 8928516--8928663 Score: 169
Period size: 43 Copynumber: 3.4 Consensus size: 44
8928506 TGGGTTATTG
8928516 TGTAAGACCATGTCTGGGATGTTGGCATCG-ACTTATGATTTACA
1 TGTAAGACCATGTCTGGGATGTTGGCATCGTA-TTATGATTTACA
*** * *
8928560 TGTAAGACCACCACTGGGATGTTGGCATCGTATT-TTATTTACG
1 TGTAAGACCATGTCTGGGATGTTGGCATCGTATTATGATTTACA
* * * *
8928603 TGTAAGATCATGTGTGGGACGTTGGCGTCGTATTA-GATTT-CA
1 TGTAAGACCATGTCTGGGATGTTGGCATCGTATTATGATTTACA
*
8928645 TGTAAGACCCTGTCTGGGA
1 TGTAAGACCATGTCTGGGA
8928664 CAGTGATCGC
Statistics
Matches: 85, Mismatches: 17, Indels: 6
0.79 0.16 0.06
Matches are distributed among these distances:
42 17 0.20
43 38 0.45
44 29 0.34
45 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGATGTTGGCATCGTATTATGATTTACA
Found at i:8943812 original size:44 final size:42
Alignment explanation
Indices: 8943669--8943815 Score: 138
Period size: 42 Copynumber: 3.4 Consensus size: 42
8943659 AATGCCAACA
* * * *
8943669 TCCCAGAC-CTGGTCTTACATGTAATTCAGTATCGATGCCTCTG
1 TCCCAGACAC-GGTCTTACACG-AAATCAGAATCGATGCCTGTG
* * *
8943712 TCCCAGACAGGGTCTTATACGAAATCAGAAACGATGCC-GATG
1 TCCCAGACACGGTCTTACACGAAATCAGAATCGATGCCTG-TG
*
8943754 TCCCAGACATGGTCTTACACGTAAATTTCA-AATCGATGCCTGTG
1 TCCCAGACACGGTCTTACACG-AAA--TCAGAATCGATGCCTGTG
*
8943798 TCCCAAACACGGTCTTAC
1 TCCCAGACACGGTCTTAC
8943816 CCGATAATTC
Statistics
Matches: 86, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
42 35 0.41
43 20 0.23
44 27 0.31
45 4 0.05
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (42 bp):
TCCCAGACACGGTCTTACACGAAATCAGAATCGATGCCTGTG
Found at i:8946747 original size:10 final size:10
Alignment explanation
Indices: 8946707--8946753 Score: 51
Period size: 11 Copynumber: 4.6 Consensus size: 10
8946697 TATTGAAACA
*
8946707 TATGTTTTGG
1 TATGATTTGG
8946717 TATGATTTTGG
1 TATGA-TTTGG
*
8946728 TTTAGATTTGG
1 TAT-GATTTGG
8946739 TATGATTTGG
1 TATGATTTGG
8946749 T-TGAT
1 TATGAT
8946754 GGATTGAGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 4 0.12
10 12 0.38
11 14 0.44
12 2 0.06
ACGTcount: A:0.17, C:0.00, G:0.28, T:0.55
Consensus pattern (10 bp):
TATGATTTGG
Found at i:8949010 original size:27 final size:26
Alignment explanation
Indices: 8948980--8949038 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 26
8948970 ATTTACTAAA
8948980 ATACCCTTAAGTATG-AAAATTACCATT
1 ATACCCTT-AG-ATGCAAAATTACCATT
*
8949007 ATACCCTTAGGTGCAAAATTACCATT
1 ATACCCTTAGATGCAAAATTACCATT
8949033 ATACCC
1 ATACCC
8949039 CTAGGGTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 2 0.07
26 20 0.67
27 8 0.27
ACGTcount: A:0.37, C:0.24, G:0.08, T:0.31
Consensus pattern (26 bp):
ATACCCTTAGATGCAAAATTACCATT
Found at i:8949213 original size:28 final size:28
Alignment explanation
Indices: 8949147--8949232 Score: 124
Period size: 27 Copynumber: 3.2 Consensus size: 28
8949137 GAGGAAGCGT
* *
8949147 TCTGGTGGCTCTGCCACAAATATATG-A
1 TCTGGTGGCTCTGTCACAAATATCTGTA
8949174 TCTGGTGGCTCTGTCACAAATATCTGTA
1 TCTGGTGGCTCTGTCACAAATATCTGTA
*
8949202 TCTGGTGACTCTGTCAC-AATATCTGT-
1 TCTGGTGGCTCTGTCACAAATATCTGTA
8949228 TCTGG
1 TCTGG
8949233 GAGCCATGCT
Statistics
Matches: 55, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 5 0.09
27 33 0.60
28 17 0.31
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.35
Consensus pattern (28 bp):
TCTGGTGGCTCTGTCACAAATATCTGTA
Found at i:8951504 original size:28 final size:28
Alignment explanation
Indices: 8951473--8951527 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
8951463 CTAGTGAGAA
8951473 TATATAACATGATAATCATATATTTGAG
1 TATATAACATGATAATCATATATTTGAG
8951501 TATATAACATGATAATCATATATTTGA
1 TATATAACATGATAATCATATATTTGA
8951528 AATCAAGATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.44, C:0.07, G:0.09, T:0.40
Consensus pattern (28 bp):
TATATAACATGATAATCATATATTTGAG
Found at i:8951715 original size:33 final size:32
Alignment explanation
Indices: 8951673--8951742 Score: 131
Period size: 33 Copynumber: 2.2 Consensus size: 32
8951663 AAAGATCTCG
8951673 TGAGTAGGGTTGAGTATTCGATCGAGTCGAGTT
1 TGAGTAGGGTTGAGTATTCGATCGAGTCGAG-T
8951706 TGAGTAGGGTTGAGTATTCGATCGAGTCGAGT
1 TGAGTAGGGTTGAGTATTCGATCGAGTCGAGT
8951738 TGAGT
1 TGAGT
8951743 CGAATCAAGT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 6 0.16
33 31 0.84
ACGTcount: A:0.21, C:0.09, G:0.37, T:0.33
Consensus pattern (32 bp):
TGAGTAGGGTTGAGTATTCGATCGAGTCGAGT
Found at i:8951974 original size:21 final size:22
Alignment explanation
Indices: 8951934--8951974 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
8951924 GACGAAGTAC
* *
8951934 AATATTATTTAACTACATAAAT
1 AATATAATTTAACTAAATAAAT
8951956 AATATAATTT-ACTAAATAA
1 AATATAATTTAACTAAATAA
8951975 TTACATGTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (22 bp):
AATATAATTTAACTAAATAAAT
Found at i:8960867 original size:5 final size:5
Alignment explanation
Indices: 8960857--8960952 Score: 76
Period size: 5 Copynumber: 19.2 Consensus size: 5
8960847 AAGCTACACC
* *
8960857 TTTTA TTTTA TTTTA TTTTA TTTTA -TTTA TTACTA TTTT- TTATA TTATTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TT-TTA TTTTA TTTTA -T-TTTA
* *
8960908 TTTT- TGTTT- TTCTA -ATTA TTTTA TTTTA TTTTA TTTTA TTCTTA T
1 TTTTA T-TTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TT-TTA T
8960953 ACTTATATTT
Statistics
Matches: 74, Mismatches: 8, Indels: 17
0.75 0.08 0.17
Matches are distributed among these distances:
4 12 0.16
5 49 0.66
6 10 0.14
7 3 0.04
ACGTcount: A:0.21, C:0.03, G:0.01, T:0.75
Consensus pattern (5 bp):
TTTTA
Found at i:8960917 original size:22 final size:22
Alignment explanation
Indices: 8960858--8960939 Score: 69
Period size: 22 Copynumber: 3.6 Consensus size: 22
8960848 AGCTACACCT
* *
8960858 TTTATTTTATTTTATTTTATTTTA
1 TTTATTTT-TATT-TTTTATATTA
**
8960882 TTTATTACTATTTTTTATATTA
1 TTTATTTTTATTTTTTATATTA
*
8960904 TTTATTTTTGTTTTTCTA-ATTA
1 TTTATTTTTATTTTT-TATATTA
8960926 TTT-TATTTTATTTT
1 TTTAT-TTTTATTTT
8960940 ATTTTATTCT
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
21 1 0.02
22 36 0.75
23 5 0.10
24 6 0.12
ACGTcount: A:0.21, C:0.02, G:0.01, T:0.76
Consensus pattern (22 bp):
TTTATTTTTATTTTTTATATTA
Found at i:8961085 original size:25 final size:25
Alignment explanation
Indices: 8961056--8961120 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
8961046 GTTTATTATT
*
8961056 TTTTTATTTTTTATTATTTATCTTTA
1 TTTTTATTTTTTATTAGTT-TCTTTA
*
8961082 TTTTTAATTTGTT-TTAGTTTCTTTA
1 TTTTT-ATTTTTTATTAGTTTCTTTA
*
8961107 TTTTT-TTATTTATT
1 TTTTTATTTTTTATT
8961121 TTCTTAAACT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
23 4 0.12
24 2 0.06
25 11 0.33
26 10 0.30
27 6 0.18
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.77
Consensus pattern (25 bp):
TTTTTATTTTTTATTAGTTTCTTTA
Found at i:8966237 original size:29 final size:29
Alignment explanation
Indices: 8966154--8966283 Score: 147
Period size: 29 Copynumber: 4.6 Consensus size: 29
8966144 ACCTCTACAT
* *
8966154 ACATGCATATGGCCCACTAGGCCCAA-TC
1 ACATTCATATGGCCCATTAGGCCCAATTC
* * *
8966182 TCATTTATATGGCCCATTTGGCCCAATTC
1 ACATTCATATGGCCCATTAGGCCCAATTC
* * * *
8966211 ACGTTCTTATGGCCTATTAGGCGCAATTC
1 ACATTCATATGGCCCATTAGGCCCAATTC
8966240 ACATTCATATGGCCCATTAGGCCCAA-TC
1 ACATTCATATGGCCCATTAGGCCCAATTC
* *
8966268 TCATTTATATGGCCCA
1 ACATTCATATGGCCCA
8966284 AATCACATTA
Statistics
Matches: 83, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
28 37 0.45
29 46 0.55
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAATTC
Found at i:8966294 original size:19 final size:19
Alignment explanation
Indices: 8966259--8966296 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
8966249 TGGCCCATTA
*
8966259 GGCCCAATCTCATTTATAT
1 GGCCCAATCACATTTATAT
8966278 GGCCCAAATCACA-TTATAT
1 GGCCC-AATCACATTTATAT
8966297 TCATGCTCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.32, C:0.26, G:0.11, T:0.32
Consensus pattern (19 bp):
GGCCCAATCACATTTATAT
Found at i:8966531 original size:8 final size:8
Alignment explanation
Indices: 8966514--8966544 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
8966504 ACTTTTGACT
*
8966514 TTTCGACA
1 TTTCGGCA
8966522 TTTCGGCA
1 TTTCGGCA
8966530 TTTCGGCA
1 TTTCGGCA
8966538 TTTCGGC
1 TTTCGGC
8966545 TTTTGCCGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.13, C:0.26, G:0.23, T:0.39
Consensus pattern (8 bp):
TTTCGGCA
Found at i:8972881 original size:40 final size:40
Alignment explanation
Indices: 8972821--8972998 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
8972811 TCGGATGATG
* *
8972821 TCCGAGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATA
*
8972861 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATA
* ** *
8972901 TCTGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATA
* * *
8972941 TCCGGACTAAGACCCGAAGGCATTTGCGCAAGTTG-CTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATA
*
8972981 TCC-GGCTAAATCCCGAAG
1 TCCGGGCTAAGTCCCGAAG
8972999 ATGCTTGGGT
Statistics
Matches: 121, Mismatches: 16, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
39 12 0.10
40 107 0.88
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATA
Found at i:8975879 original size:18 final size:18
Alignment explanation
Indices: 8975856--8975899 Score: 88
Period size: 18 Copynumber: 2.4 Consensus size: 18
8975846 TATATATGTG
8975856 AGACTTTAGCATCCAGTA
1 AGACTTTAGCATCCAGTA
8975874 AGACTTTAGCATCCAGTA
1 AGACTTTAGCATCCAGTA
8975892 AGACTTTA
1 AGACTTTA
8975900 CCTGTTGAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (18 bp):
AGACTTTAGCATCCAGTA
Found at i:8980109 original size:40 final size:40
Alignment explanation
Indices: 8980054--8980231 Score: 252
Period size: 40 Copynumber: 4.5 Consensus size: 40
8980044 TCAGATGATG
* *
8980054 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA
8980094 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA
* **
8980134 TCCAGGCTAAGTCCCGAAGGCATTCATGCTAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA
* * *
8980174 TCCGGGCTAAGACCCGAAGGCATTTGCGCGAGTTG-CTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTATA
*
8980214 TCC-GGCTAAATCCCGAAG
1 TCCGGGCTAAGTCCCGAAG
8980232 ATGCTTGGGT
Statistics
Matches: 124, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 13 0.10
40 109 0.88
41 2 0.02
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA
Found at i:8984582 original size:46 final size:46
Alignment explanation
Indices: 8984420--8984591 Score: 192
Period size: 45 Copynumber: 3.7 Consensus size: 46
8984410 AACCCGCCCC
* * *
8984420 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGC-TTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* * *
8984465 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
8984513 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
8984558 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
8984592 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 13, Indels: 19
0.76 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 32 0.31
46 29 0.28
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:8984587 original size:93 final size:92
Alignment explanation
Indices: 8984425--8984594 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 92
8984415 GCCCCTAAGT
* *
8984425 GAACTCAGACTCAACTCAACGAGCTCGGGCTTCGCATCCATAAGTGAACTCGGACTCAACTCAAT
1 GAACTCAGACTCAACTCAACGAGCTCGGACTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
8984490 GAGTTCGGATGCCTAGTTACATTTCAC
66 GAGTTCGGATGCCTAGTTACATTTCAC
* *
8984517 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGAC-TTCGCATCCATAAGTGAACTCGGACTCAACTCAA
8984582 CGAGTTCGGATGC
65 CGAGTTCGGATGC
8984595 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 27 0.37
93 46 0.63
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTTCAC
Found at i:8990013 original size:6 final size:6
Alignment explanation
Indices: 8989997--8990037 Score: 73
Period size: 6 Copynumber: 6.8 Consensus size: 6
8989987 TTAGAACATG
*
8989997 AAAAAT GAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
8990038 CAGAAGGGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:8996118 original size:27 final size:27
Alignment explanation
Indices: 8996080--8996169 Score: 146
Period size: 27 Copynumber: 3.3 Consensus size: 27
8996070 AATGCCTTGT
8996080 TGGTGTGTTTGGGAAGATATGATATAC
1 TGGTGTGTTTGGGAAGATATGATATAC
8996107 TGGTGTGTTTGGGAAGATATGATATAC
1 TGGTGTGTTTGGGAAGATATGATATAC
* *
8996134 TGGTGTGTTTGGGAGGCTAT-ATTATAC
1 TGGTGTGTTTGGGAAGATATGA-TATAC
8996161 TGGTGTGTT
1 TGGTGTGTT
8996170 ATGTAGGATT
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
26 1 0.02
27 59 0.98
ACGTcount: A:0.21, C:0.04, G:0.34, T:0.40
Consensus pattern (27 bp):
TGGTGTGTTTGGGAAGATATGATATAC
Found at i:9003599 original size:12 final size:12
Alignment explanation
Indices: 9003567--9003615 Score: 52
Period size: 12 Copynumber: 4.3 Consensus size: 12
9003557 AACTATTTGG
9003567 CTATATCAACAA
1 CTATATCAACAA
9003579 CTATGA-C-A-AA
1 CTAT-ATCAACAA
9003589 C-ATATCAACAA
1 CTATATCAACAA
*
9003600 CTATATCAATAA
1 CTATATCAACAA
9003612 CTAT
1 CTAT
9003616 TTATACATCA
Statistics
Matches: 31, Mismatches: 1, Indels: 10
0.74 0.02 0.24
Matches are distributed among these distances:
8 1 0.03
9 3 0.10
10 4 0.13
11 4 0.13
12 18 0.58
13 1 0.03
ACGTcount: A:0.49, C:0.22, G:0.02, T:0.27
Consensus pattern (12 bp):
CTATATCAACAA
Found at i:9010104 original size:40 final size:40
Alignment explanation
Indices: 9009906--9010107 Score: 239
Period size: 40 Copynumber: 5.0 Consensus size: 40
9009896 CAGAATTTAA
** *
9009906 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
9009946 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
9009986 CCGGATTTAGTAACTCGGACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
9010026 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
9010066 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
9010106 CC
1 CC
9010108 AGACATCATT
Statistics
Matches: 142, Mismatches: 16, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
39 4 0.03
40 127 0.89
41 11 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:9019472 original size:47 final size:46
Alignment explanation
Indices: 9019399--9019758 Score: 214
Period size: 47 Copynumber: 7.7 Consensus size: 46
9019389 TGATTTGTGC
* *
9019399 GCCAGTGTAAGACATGTCTGGAACATGCTTCAGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGA
* * * * * *
9019445 GCCATTGTAAGACCATGTCTGGGACATGGCAAC-GGCATCCA-GACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCA--CATTATGAGA
* * * *
9019493 GCTAGTGTAAGACATGTCTAGGACATGCTTCAGCCATATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGA
* * * * ** *
9019539 GCCAGTTTAAAACCATGTCTGGGACATGGCATC-GACATAGAAATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCACA-TTATGAGA
** * ** * *
9019587 GCCA-TAGTAAGACATGTCTGGGACATGCATTGGCCTCGACAAAGATA
1 GCCAGT-GTAAGACATGTCTGGGACATGCATCAGCCAC-ATTATGAGA
* * * * * * * *
9019634 GCCATTGTAAGACGTGTCTAGGACATGCATCGGCTA-A-GA-GTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATG-AGA
*
9019678 GCTAGTGTAAGACATGTCTGGGACATGCATCAG-CACGTATATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCAC--AT-TATGAGA
9019726 GCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
9019759 GACAATGTAT
Statistics
Matches: 236, Mismatches: 56, Indels: 40
0.71 0.17 0.12
Matches are distributed among these distances:
43 2 0.01
44 29 0.12
45 2 0.01
46 32 0.14
47 100 0.42
48 49 0.21
49 17 0.07
50 5 0.02
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGA
Found at i:9019563 original size:94 final size:92
Alignment explanation
Indices: 9019402--9019759 Score: 370
Period size: 94 Copynumber: 3.8 Consensus size: 92
9019392 TTTGTGCGCC
* *
9019402 AGTGTAAGACATGTCTGGAACATGCTTCAGCCACATTATGAGAGCCATTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCTTCAGCCATATTATGAGAGCCATTGTAAGACCATGTCTGG
* * *
9019467 GACATGGCAACGGCATCCAGACGAGGGCT
66 GACATGGCATCGGCAT-AAGA-GAGTGCT
* *
9019496 AGTGTAAGACATGTCTAGGACATGCTTCAGCCATATTATGAGAGCCAGTT-TAAAACCATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCTTCAGCCATATTATGAGAGCCA-TTGTAAGACCATGTCTG
* * *
9019560 GGACATGGCATCGACATAGAAATGAGTGCC
65 GGACATGGCATCGGCATA-AGA-GAGTGCT
* ** * * *
9019590 A-TAGTAAGACATGTCTGGGACATGCATT-GGCC-TCGACAAAGATAGCCATTGTAAGA-CGTGT
1 AGT-GTAAGACATGTCTGGGACATGC-TTCAGCCAT--ATTATGAGAGCCATTGTAAGACCATGT
* *
9019651 CTAGGACAT-GCATCGGC-TAAGAGTTGTGCT
62 CTGGGACATGGCATCGGCATAAGAG-AGTGCT
* * *
9019681 AGTGTAAGACATGTCTGGGACATGCATCAGCACGTATATATGAGAGCCAGTGTAAGACCATGTCT
1 AGTGTAAGACATGTCTGGGACATGCTTCAGC-CATAT-TATGAGAGCCATTGTAAGACCATGTCT
9019746 GGGACATGGCATCG
64 GGGACATGGCATCG
9019760 ACAATGTATC
Statistics
Matches: 216, Mismatches: 33, Indels: 30
0.77 0.12 0.11
Matches are distributed among these distances:
90 2 0.01
91 32 0.15
92 19 0.09
93 22 0.10
94 124 0.57
95 17 0.08
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (92 bp):
AGTGTAAGACATGTCTGGGACATGCTTCAGCCATATTATGAGAGCCATTGTAAGACCATGTCTGG
GACATGGCATCGGCATAAGAGAGTGCT
Found at i:9044502 original size:51 final size:50
Alignment explanation
Indices: 9044430--9044581 Score: 176
Period size: 51 Copynumber: 3.1 Consensus size: 50
9044420 ACATGTAACA
* *
9044430 CATCCATAATGAACTCAGACCACTCAACGAGCTCGGATGCTACATGCATCG
1 CATCCATAATGAACTCGGACCACTCAACGAGCTCAGATG-TACATGCATCG
* *
9044481 CATCCATCATGAACACGGACCACTCAACGAGCTCAGATGT---T-CA---
1 CATCCATAATGAACTCGGACCACTCAACGAGCTCAGATGTACATGCATCG
9044524 CATCCATAATGAACTCGGACCACT-AGACGAGCTCAGATGTTACATGCATCG
1 CATCCATAATGAACTCGGACCACTCA-ACGAGCTCAGATG-TACATGCATCG
*
9044575 TATCCAT
1 CATCCAT
9044582 CATGTTCATA
Statistics
Matches: 85, Mismatches: 7, Indels: 18
0.77 0.06 0.16
Matches are distributed among these distances:
42 1 0.01
43 35 0.41
44 1 0.01
46 2 0.02
47 2 0.02
48 2 0.02
50 1 0.01
51 41 0.48
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.21
Consensus pattern (50 bp):
CATCCATAATGAACTCGGACCACTCAACGAGCTCAGATGTACATGCATCG
Found at i:9044543 original size:43 final size:42
Alignment explanation
Indices: 9044481--9044568 Score: 133
Period size: 43 Copynumber: 2.1 Consensus size: 42
9044471 ACATGCATCG
*
9044481 CATCCATCATGAACACGGACCACTCA-ACGAGCTCAGATGTTCA
1 CATCCATAATGAACACGGACCACT-AGACGAGCTCAGATGTT-A
*
9044524 CATCCATAATGAACTCGGACCACTAGACGAGCTCAGATGTTA
1 CATCCATAATGAACACGGACCACTAGACGAGCTCAGATGTTA
9044566 CAT
1 CAT
9044569 GCATCGTATC
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
42 5 0.12
43 37 0.88
ACGTcount: A:0.33, C:0.30, G:0.17, T:0.20
Consensus pattern (42 bp):
CATCCATAATGAACACGGACCACTAGACGAGCTCAGATGTTA
Found at i:9047789 original size:46 final size:44
Alignment explanation
Indices: 9047691--9047860 Score: 146
Period size: 46 Copynumber: 3.7 Consensus size: 44
9047681 CATCTTGTAA
* * * * *
9047691 CCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCCTGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCCT-CGTTC-AATG
* *
9047737 CAGATGCATGTCTCAGACATGTCTTACACTAGCACTCGTTTCAATG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGC-CTCG-TTCAATG
* *
9047783 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTC-AT-AATGTGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGC-CTCGTTCAA--T-G
*
9047831 CCGATGCATGTCCGAGACATGTCTTACACT
1 CCGATGCATGTCCCAGACATGTCTTACACT
9047861 GGCGCACATA
Statistics
Matches: 103, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
45 2 0.02
46 50 0.49
47 28 0.27
48 23 0.22
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (44 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCCTCGTTCAATG
Found at i:9047792 original size:138 final size:139
Alignment explanation
Indices: 9047559--9047863 Score: 323
Period size: 138 Copynumber: 2.2 Consensus size: 139
9047549 CAAGCAATGC
* * * *
9047559 CATGTCCCAGATATGGTCTTACACTAGCTTTCACATCTGGCTGATGTATGTCCCAAACATGTCTT
1 CATGTCCCAGACAT-GTCTTACACTGGCTTTCACATCTGGCAGATGCATGTCCCAAACATGTCTT
* * ** **
9047624 ACACTAGCACACATATCTGAGTCGAAGCCATGTCCCGGACACGGTCTTACACT-G-ACACATCTT
65 ACACTAGCACACATATCTAAGCCGAAGCCATGTCCCAAACACGGTCTTACACTAGCACACATAAT
9047687 GTAACCGATG
130 GTAACCGATG
* * *
9047697 CATGTCCCAGACATGTCTTACACTGGC-TT-ACGTCCTGAGGCAGATGCATGTCTCAGACATGTC
1 CATGTCCCAGACATGTCTTACACTGGCTTTCACAT-CT--GGCAGATGCATGTCCCAAACATGTC
* * * * * * *
9047760 TTACACTAGCACTCGTTTC-AATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCAT
63 TTACACTAGCACACATATCTAA-GCCGAAGCCATGTCCCAAACACGGTCTTACACTAGCACACAT
**
9047824 AATGTGGCCGATG
127 AATGTAACCGATG
*
9047837 CATGTCCGAGACATGTCTTACACTGGC
1 CATGTCCCAGACATGTCTTACACTGGC
9047864 GCACATATCA
Statistics
Matches: 138, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
135 3 0.02
136 4 0.03
137 13 0.09
138 78 0.57
139 1 0.01
140 39 0.28
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (139 bp):
CATGTCCCAGACATGTCTTACACTGGCTTTCACATCTGGCAGATGCATGTCCCAAACATGTCTTA
CACTAGCACACATATCTAAGCCGAAGCCATGTCCCAAACACGGTCTTACACTAGCACACATAATG
TAACCGATG
Found at i:9047837 original size:94 final size:92
Alignment explanation
Indices: 9047601--9047860 Score: 232
Period size: 94 Copynumber: 2.8 Consensus size: 92
9047591 ACATCTGGCT
* ** * * *
9047601 GATGTATGTCCCAAACATGTCTTACACTAGCACACATATCTGAGTC-GAAGCCATGTCCCG-GAC
1 GATGCATGTCCCAAACATGTCTTACACTAGCTTACATA-ATGAGGCAGATG-CATGT-CCGAGAC
*
9047664 ACGGTCTTACACT-GACACATC-TTGT-AA--CC
63 A-TGTCTTACACTAG-CAC-TCGTT-TCAATGCC
* * * **
9047693 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCCTGAGGCAGATGCATGTCTC-AGACAT
1 GATGCATGTCCCAAACATGTCTTACACTAGCTTACATAATGAGGCAGATGCATGTC-CGAGACAT
9047757 GTCTTACACTAGCACTCGTTTCAATGCC
65 GTCTTACACTAGCACTCGTTTCAATGCC
* *
9047785 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCT-CATAATGTGGCCGATGCATGTCCGAGAC
1 GATG-CATGTCCCAAACAT-GTCTTACACTAGCT-TACATAATGAGGCAGATGCATGTCCGAGAC
9047849 ATGTCTTACACT
63 ATGTCTTACACT
9047861 GGCGCACATA
Statistics
Matches: 139, Mismatches: 17, Indels: 22
0.78 0.10 0.12
Matches are distributed among these distances:
89 3 0.02
90 18 0.13
91 17 0.12
92 40 0.29
93 14 0.10
94 46 0.33
95 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.27
Consensus pattern (92 bp):
GATGCATGTCCCAAACATGTCTTACACTAGCTTACATAATGAGGCAGATGCATGTCCGAGACATG
TCTTACACTAGCACTCGTTTCAATGCC
Found at i:9050572 original size:51 final size:52
Alignment explanation
Indices: 9050489--9050595 Score: 144
Period size: 51 Copynumber: 2.1 Consensus size: 52
9050479 CTACCTCATA
* *
9050489 ACATGTAACACATCCATAATGAACACGGACCACTCAACGAGCTCGGATGCT-
1 ACATGTAACACATCCATAATGAACACGAACCACTCAACGAGCTCAGATGCTC
* * ** *
9050540 ACATGTATCACATCCATCATGAACTTGAACCACTCAATGAGCTCAGATGCTC
1 ACATGTAACACATCCATAATGAACACGAACCACTCAACGAGCTCAGATGCTC
9050592 ACAT
1 ACAT
9050596 CCATAATGAA
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
51 44 0.92
52 4 0.08
ACGTcount: A:0.35, C:0.29, G:0.15, T:0.21
Consensus pattern (52 bp):
ACATGTAACACATCCATAATGAACACGAACCACTCAACGAGCTCAGATGCTC
Found at i:9058874 original size:40 final size:40
Alignment explanation
Indices: 9058819--9058895 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
9058809 AAAATCAAAT
* *
9058819 AGATGGAGTTTTAGCGGCGTTTTTAAAAAAATGCCGCAAG
1 AGATCGAGCTTTAGCGGCGTTTTTAAAAAAATGCCGCAAG
* *
9058859 AGATCGAGCTTTAGCGGCGTTTTTGAAAAAGTGCCGC
1 AGATCGAGCTTTAGCGGCGTTTTTAAAAAAATGCCGC
9058896 TAAAGGTTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.27
Consensus pattern (40 bp):
AGATCGAGCTTTAGCGGCGTTTTTAAAAAAATGCCGCAAG
Found at i:9058913 original size:40 final size:39
Alignment explanation
Indices: 9058829--9058939 Score: 116
Period size: 40 Copynumber: 2.8 Consensus size: 39
9058819 AGATGGAGTT
* *
9058829 TTAGCGGCGTTTTTAAAAAAATGCCGC-AAGAGATCGAGCT
1 TTAGCGGCGTTTTT-AAAAAATGCCGCTAA-AGATCGACCA
* * *
9058869 TTAGCGGCGTTTTTGAAAAAGTGCCGCTAAAGGTTGACCA
1 TTAGCGGCGTTTTT-AAAAAATGCCGCTAAAGATCGACCA
* *
9058909 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAA
1 TTAGCGGCG-TTTTTAAAAAATGCCGCTAAA
9058940 AGTTTAAGCA
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
40 53 0.88
41 7 0.12
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (39 bp):
TTAGCGGCGTTTTTAAAAAATGCCGCTAAAGATCGACCA
Found at i:9059986 original size:25 final size:24
Alignment explanation
Indices: 9059936--9059987 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
9059926 TAACTTATTT
**
9059936 TTTAAATGAATTTAAAATTTTCTA
1 TTTAAATGAATTTAAAATTTAATA
* *
9059960 TTTAAACTGATTTTTAAATTTAATA
1 TTTAAA-TGAATTTAAAATTTAATA
9059985 TTT
1 TTT
9059988 TTATAGGTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.54
Consensus pattern (24 bp):
TTTAAATGAATTTAAAATTTAATA
Found at i:9060022 original size:14 final size:13
Alignment explanation
Indices: 9060001--9060045 Score: 54
Period size: 14 Copynumber: 3.3 Consensus size: 13
9059991 TAGGTTTAAG
9060001 GGTTATGATTTAT
1 GGTTATGATTTAT
9060014 GGTTGATGATTTAT
1 GGTT-ATGATTTAT
* *
9060028 GTTTTATGATTTAG
1 G-GTTATGATTTAT
9060042 GGTT
1 GGTT
9060046 TGAGGTTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
13 6 0.22
14 19 0.70
15 2 0.07
ACGTcount: A:0.20, C:0.00, G:0.27, T:0.53
Consensus pattern (13 bp):
GGTTATGATTTAT
Found at i:9060219 original size:14 final size:14
Alignment explanation
Indices: 9060202--9060231 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
9060192 GTGTTTTAAA
9060202 GTTTATTATTTAGG
1 GTTTATTATTTAGG
9060216 GTTTATTATTTAGG
1 GTTTATTATTTAGG
9060230 GT
1 GT
9060232 CTAAGATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.23, T:0.57
Consensus pattern (14 bp):
GTTTATTATTTAGG
Found at i:9060452 original size:7 final size:7
Alignment explanation
Indices: 9060406--9060464 Score: 55
Period size: 7 Copynumber: 8.4 Consensus size: 7
9060396 GGTTAATTAA
9060406 GGTTTAG
1 GGTTTAG
*
9060413 GGTCTAG
1 GGTTTAG
*
9060420 GGTTTGG
1 GGTTTAG
9060427 GGTTTAG
1 GGTTTAG
* *
9060434 GATTTAT
1 GGTTTAG
*
9060441 AGTTTAG
1 GGTTTAG
*
9060448 GGTTTAT
1 GGTTTAG
*
9060455 GGTATAG
1 GGTTTAG
9060462 GGT
1 GGT
9060465 CAGGGTCTTA
Statistics
Matches: 39, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
7 39 1.00
ACGTcount: A:0.17, C:0.02, G:0.39, T:0.42
Consensus pattern (7 bp):
GGTTTAG
Found at i:9060747 original size:14 final size:14
Alignment explanation
Indices: 9060728--9060761 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
9060718 CTTATGGTTT
*
9060728 GGGTTTGGGATTTG
1 GGGTTTGGGATTTA
9060742 GGGTTTGGGATTTA
1 GGGTTTGGGATTTA
9060756 GGGTTT
1 GGGTTT
9060762 AGTGTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.09, C:0.00, G:0.47, T:0.44
Consensus pattern (14 bp):
GGGTTTGGGATTTA
Found at i:9061702 original size:24 final size:24
Alignment explanation
Indices: 9061672--9061717 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
9061662 GTCAGGTAAC
9061672 TTTAATTTCTAAGTCTCTGTTTCT
1 TTTAATTTCTAAGTCTCTGTTTCT
9061696 TTTAATTTCTAAGTCTCTGTTT
1 TTTAATTTCTAAGTCTCTGTTT
9061718 ACAAATACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.17, C:0.15, G:0.09, T:0.59
Consensus pattern (24 bp):
TTTAATTTCTAAGTCTCTGTTTCT
Found at i:9062496 original size:24 final size:24
Alignment explanation
Indices: 9062433--9062502 Score: 70
Period size: 24 Copynumber: 2.9 Consensus size: 24
9062423 TTTGTGACTG
**
9062433 TGAAAATTGAATTATAATAATGTTA
1 TGAAAATTTTATTATAAT-ATGTTA
** *
9062458 T-ACTATCTTATTTATAATATGTTA
1 TGAAAATTTTA-TTATAATATGTTA
9062482 TGAAAATTTTATTATAATATG
1 TGAAAATTTTATTATAATATG
9062503 CTTTGGTTAG
Statistics
Matches: 35, Mismatches: 8, Indels: 5
0.73 0.17 0.10
Matches are distributed among these distances:
24 21 0.60
25 14 0.40
ACGTcount: A:0.41, C:0.03, G:0.09, T:0.47
Consensus pattern (24 bp):
TGAAAATTTTATTATAATATGTTA
Found at i:9066004 original size:15 final size:15
Alignment explanation
Indices: 9065984--9066012 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
9065974 GGAGTAGACC
9065984 AGGTACGTTTTATTA
1 AGGTACGTTTTATTA
9065999 AGGTACGTTTTATT
1 AGGTACGTTTTATT
9066013 TCAAAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.07, G:0.21, T:0.48
Consensus pattern (15 bp):
AGGTACGTTTTATTA
Found at i:9067011 original size:420 final size:420
Alignment explanation
Indices: 9066205--9067048 Score: 1559
Period size: 420 Copynumber: 2.0 Consensus size: 420
9066195 AGTATGAATT
*
9066205 AATTTTATTACCATAGATGTAGCTTGCTTGTCCATTATGATTACAACAATAGCTGACCTTCTCTC
1 AATTTTATTACCATAGATGTAGCTTGCTTGTCCATTATAATTACAACAATAGCTGACCTTCTCTC
*
9066270 CAACCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGTCTTA
66 CAACCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTA
* *
9066335 TATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAA
131 TATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACACCACGTATAATGAATCTTAA
*
9066400 AAAATTCAAAGAGACTTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATTT
196 AAAATTCAAAGAAACTTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATTT
*
9066465 CCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACTATTT
261 CCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGAAATTATTATATTCAAATTACTATTT
*
9066530 TTTATATTAATAATGTTTGATTTTAATATTTAATATTTTTAAATGTATTTTTATAAAAAAAAAGA
326 TTTATATTAATAATGTTTGATTTTAATATTTAATATTTTTAAATGTATTTGTAT-AAAAAAAAGA
9066595 TTTCAAAAAAAGTTCTATGGAGCTTATAAAC
390 TTTCAAAAAAAGTTCTATGGAGCTTATAAAC
*
9066626 AATTTTATTACCATATATGTAGCTTGCTTGTCCATTATAATTACAACAATAGCTGACCTTCTCTC
1 AATTTTATTACCATAGATGTAGCTTGCTTGTCCATTATAATTACAACAATAGCTGACCTTCTCTC
9066691 CAACCTTATTTTAAAT-TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTA
66 CAACCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTA
9066755 TATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACACCACGTATAATGAATCTTAA
131 TATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACACCACGTATAATGAATCTTAA
9066820 AAAATTCAAA-AAATCTTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATT
196 AAAATTCAAAGAAA-CTTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATT
9066884 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGAAATTATTATATTCAAATTACTATT
260 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGAAATTATTATATTCAAATTACTA-T
9066949 TTTTTATATTAATAATGTTTGATTTTAATATTTAATATTTTTAAATGTATTTGTAT-AAAAAAAG
324 TTTTTATATTAATAATGTTTGATTTTAATATTTAATATTTTTAAATGTATTTGTATAAAAAAAAG
*
9067013 ATTTCAAAAAAAGTTCTATGGAGCTTATAAAT
389 ATTTCAAAAAAAGTTCTATGGAGCTTATAAAC
9067045 AATT
1 AATT
9067049 CTATCGACCT
Statistics
Matches: 412, Mismatches: 9, Indels: 6
0.96 0.02 0.01
Matches are distributed among these distances:
419 45 0.11
420 232 0.56
421 135 0.33
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (420 bp):
AATTTTATTACCATAGATGTAGCTTGCTTGTCCATTATAATTACAACAATAGCTGACCTTCTCTC
CAACCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTA
TATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACACCACGTATAATGAATCTTAA
AAAATTCAAAGAAACTTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATTT
CCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGAAATTATTATATTCAAATTACTATTT
TTTATATTAATAATGTTTGATTTTAATATTTAATATTTTTAAATGTATTTGTATAAAAAAAAGAT
TTCAAAAAAAGTTCTATGGAGCTTATAAAC
Found at i:9067194 original size:53 final size:49
Alignment explanation
Indices: 9067097--9067201 Score: 120
Period size: 53 Copynumber: 2.1 Consensus size: 49
9067087 GAAGTGCCAC
** *
9067097 TTATAAATAATTTTATCAATATAATAATATTGATCATTGTTTAAATATA
1 TTATAAATAATTTTATCAATATAATAATATTGATCATTACTTAAATAAA
* * *
9067146 TTATAACTAATTTTTATCAAAATAGTATTAATATTGATTATTACTTAAATAAA
1 TTATAAATAA-TTTTATC--AATA-TAATAATATTGATCATTACTTAAATAAA
9067199 TTA
1 TTA
9067202 CATAACTCAC
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
49 9 0.20
50 7 0.15
52 4 0.09
53 26 0.57
ACGTcount: A:0.45, C:0.05, G:0.04, T:0.47
Consensus pattern (49 bp):
TTATAAATAATTTTATCAATATAATAATATTGATCATTACTTAAATAAA
Found at i:9069172 original size:27 final size:27
Alignment explanation
Indices: 9069134--9069187 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
9069124 TGTGGAAGAA
9069134 AAGAAGTATTTTTTTTTTGAGTTGCCT
1 AAGAAGTATTTTTTTTTTGAGTTGCCT
9069161 AAGAAGTATTTTTTTTTTGAGTTGCCT
1 AAGAAGTATTTTTTTTTTGAGTTGCCT
9069188 TATTGGGAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (27 bp):
AAGAAGTATTTTTTTTTTGAGTTGCCT
Found at i:9072359 original size:37 final size:37
Alignment explanation
Indices: 9072309--9072498 Score: 335
Period size: 37 Copynumber: 5.1 Consensus size: 37
9072299 TTATTACGAA
* * * *
9072309 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
*
9072346 GTCTTACCCGGACAAAATCCCCACACATAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
9072383 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
9072420 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
9072457 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
9072494 GTCTT
1 GTCTT
9072499 TAGAGCTCGG
Statistics
Matches: 147, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 147 1.00
ACGTcount: A:0.27, C:0.34, G:0.18, T:0.21
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
Found at i:9072695 original size:47 final size:47
Alignment explanation
Indices: 9072617--9072920 Score: 500
Period size: 47 Copynumber: 6.5 Consensus size: 47
9072607 CCCTTCGGGA
* * * * * *
9072617 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
9072664 CCTGTCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
9072711 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
9072758 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
9072805 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
9072852 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
9072899 CTTATCACATATATACAATTTC
1 CTTATCACATATATACACTTTC
9072921 TTGGCTGAAT
Statistics
Matches: 242, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 242 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:9072696 original size:25 final size:25
Alignment explanation
Indices: 9072668--9072745 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
9072658 CTCGGCCCTG
9072668 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
*** *** *
9072693 TCACAT-TGGCCA-TTAGGCCTT-A
1 TCACATATATACACTTTCACATTCA
9072715 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
9072740 TCACAT
1 TCACAT
9072746 CGGCCATTAG
Statistics
Matches: 36, Mismatches: 14, Indels: 6
0.64 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 13 0.36
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (25 bp):
TCACATATATACACTTTCACATTCA
Found at i:9077127 original size:21 final size:21
Alignment explanation
Indices: 9077101--9077148 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
9077091 TCAACTTAGA
*
9077101 GCGGAGACAGCAGCGCGGGAG
1 GCGGAGACAGCAGCGAGGGAG
* *
9077122 GCGGAGGCAGCAGTGAGGGAG
1 GCGGAGACAGCAGCGAGGGAG
9077143 GCGGAG
1 GCGGAG
9077149 CAGAATAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.56, T:0.02
Consensus pattern (21 bp):
GCGGAGACAGCAGCGAGGGAG
Found at i:9077487 original size:41 final size:40
Alignment explanation
Indices: 9077442--9077589 Score: 156
Period size: 43 Copynumber: 3.5 Consensus size: 40
9077432 ACTGGGCAAA
*
9077442 TTAGCGGCG-TTTTTCAAAAGCGCTACTAAAAGTGCTGGTCT
1 TTAGCGGCGTTTTTTAAAAAGC-CTACTAAAAGT-CTGGTCT
* *
9077483 TTAGCGGCGTTTTTTTAAAAAGCACCACTAAAAATCCTGGTCT
1 TTAGCGGCG-TTTTTTAAAAAGC-CTACTAAAAGT-CTGGTCT
* *
9077526 TTAGCGGCGCTTTTATAAAAATGCCT-CTAAATGTCTGGTCT
1 TTAGCGGCG-TTTTTTAAAAA-GCCTACTAAAAGTCTGGTCT
*
9077567 TTAGTGGCGTTTTTTAAGAAAGC
1 TTAGCGGCGTTTTTTAA-AAAGC
9077590 GCCGCTAATT
Statistics
Matches: 91, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
40 9 0.10
41 27 0.30
42 6 0.07
43 47 0.52
44 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.34
Consensus pattern (40 bp):
TTAGCGGCGTTTTTTAAAAAGCCTACTAAAAGTCTGGTCT
Found at i:9077687 original size:31 final size:33
Alignment explanation
Indices: 9077623--9077687 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
9077613 ATATAGCGAC
* * *
9077623 GTTTTTTGCGGTGCTTGAGAAAGCGCCACTAAA
1 GTTTTTAGCGGCGCTTGAGAAAACGCCACTAAA
*
9077656 GTTTTTAGCGGCGCTT-A-AAAACGCCGCTAAA
1 GTTTTTAGCGGCGCTTGAGAAAACGCCACTAAA
9077687 G
1 G
9077688 GCAAAAAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
31 13 0.46
32 1 0.04
33 14 0.50
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (33 bp):
GTTTTTAGCGGCGCTTGAGAAAACGCCACTAAA
Found at i:9080510 original size:11 final size:11
Alignment explanation
Indices: 9080494--9080521 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
9080484 AATTTGCGTG
9080494 TTATAAAAATA
1 TTATAAAAATA
9080505 TTATAAAAATA
1 TTATAAAAATA
9080516 TTATAA
1 TTATAA
9080522 TATACTCATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (11 bp):
TTATAAAAATA
Found at i:9086521 original size:16 final size:15
Alignment explanation
Indices: 9086498--9086531 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
9086488 TCATCCCACC
9086498 ATTATATA-ATTTTT
1 ATTATATATATTTTT
9086512 ATTATATATATTTTT
1 ATTATATATATTTTT
*
9086527 GTTAT
1 ATTAT
9086532 TAAATCTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (15 bp):
ATTATATATATTTTT
Found at i:9099984 original size:35 final size:35
Alignment explanation
Indices: 9099945--9100025 Score: 92
Period size: 35 Copynumber: 2.3 Consensus size: 35
9099935 CAAAATCAGT
* *
9099945 CAGATGCAGATTCATGCCTAAGCCCATC-AAAGATA
1 CAGATGCAGATTCAGGCCTAAACCCATCTAAA-ATA
* ** *
9099980 CAGATGCATATTTGGGCCTAAACCCATCTCAAATA
1 CAGATGCAGATTCAGGCCTAAACCCATCTAAAATA
9100015 CAGATGCAGAT
1 CAGATGCAGAT
9100026 ATATAGATCA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
35 36 0.95
36 2 0.05
ACGTcount: A:0.36, C:0.25, G:0.17, T:0.22
Consensus pattern (35 bp):
CAGATGCAGATTCAGGCCTAAACCCATCTAAAATA
Found at i:9110814 original size:10 final size:10
Alignment explanation
Indices: 9110799--9110836 Score: 51
Period size: 9 Copynumber: 3.7 Consensus size: 10
9110789 TAATTAGTTA
9110799 TTAAAAATTT
1 TTAAAAATTT
9110809 TT-AAAATTT
1 TTAAAAATTT
9110818 TTAAAAATTATT
1 TTAAAAA-T-TT
9110830 TTAAAAA
1 TTAAAAA
9110837 ATTAAAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 9 0.36
10 6 0.24
11 1 0.04
12 9 0.36
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (10 bp):
TTAAAAATTT
Found at i:9110858 original size:8 final size:8
Alignment explanation
Indices: 9110827--9110882 Score: 53
Period size: 8 Copynumber: 7.1 Consensus size: 8
9110817 TTTAAAAATT
9110827 ATTTTAAA
1 ATTTTAAA
**
9110835 AAATTAAA
1 ATTTTAAA
* *
9110843 AATATAAA
1 ATTTTAAA
9110851 ATTTT-AA
1 ATTTTAAA
9110858 ATTTTAAA
1 ATTTTAAA
9110866 ATATTT-AA
1 AT-TTTAAA
9110874 ATTTTAAA
1 ATTTTAAA
9110882 A
1 A
9110883 AATTAATTAA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
7 10 0.26
8 26 0.67
9 3 0.08
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (8 bp):
ATTTTAAA
Found at i:9110872 original size:16 final size:16
Alignment explanation
Indices: 9110827--9110882 Score: 69
Period size: 16 Copynumber: 3.6 Consensus size: 16
9110817 TTTAAAAATT
* *
9110827 ATTTTAAAAAATTAAA
1 ATTTTAAAATATTTAA
* *
9110843 AATATAAAAT-TTTAA
1 ATTTTAAAATATTTAA
9110858 ATTTTAAAATATTTAA
1 ATTTTAAAATATTTAA
9110874 ATTTTAAAA
1 ATTTTAAAA
9110883 AATTAATTAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
15 12 0.36
16 21 0.64
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
ATTTTAAAATATTTAA
Found at i:9111623 original size:21 final size:23
Alignment explanation
Indices: 9111575--9111629 Score: 78
Period size: 21 Copynumber: 2.4 Consensus size: 23
9111565 AAAGGGTTAT
*
9111575 AATTAAAAAATATAATTTTTAAAA
1 AATTTAAAAATATAATTTTT-AAA
9111599 AATTTAAAAATAT-ATTTTT-AA
1 AATTTAAAAATATAATTTTTAAA
9111620 AATTTAAAAA
1 AATTTAAAAA
9111630 AGTGAAAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 12 0.40
23 6 0.20
24 12 0.40
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (23 bp):
AATTTAAAAATATAATTTTTAAA
Found at i:9112459 original size:22 final size:23
Alignment explanation
Indices: 9112423--9112470 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 23
9112413 TTGAATTGAT
*
9112423 TTTTATATATTTTTAATATCTTTA
1 TTTTATATATTTTTAATA-ATTTA
9112447 TTTTA-AT-TTTTTAATAATTTA
1 TTTTATATATTTTTAATAATTTA
9112468 TTT
1 TTT
9112471 GCTTTGAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 7 0.30
22 9 0.39
23 2 0.09
24 5 0.22
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (23 bp):
TTTTATATATTTTTAATAATTTA
Found at i:9112720 original size:25 final size:25
Alignment explanation
Indices: 9112677--9112747 Score: 74
Period size: 25 Copynumber: 2.7 Consensus size: 25
9112667 GTTTTAGAAT
9112677 TTTTGTTTAAATTGATAAAATCATTTTTA
1 TTTT-TTTAAATT--TAAAAT-ATTTTTA
*
9112706 -TTTTTTAAATTTAAAGA-GTTTTTA
1 TTTTTTTAAATTTAAA-ATATTTTTA
9112730 TTTTTTTAAATTTAAAAT
1 TTTTTTTAAATTTAAAAT
9112748 TTTCATTTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
24 7 0.18
25 19 0.50
26 1 0.03
27 8 0.21
28 3 0.08
ACGTcount: A:0.35, C:0.01, G:0.06, T:0.58
Consensus pattern (25 bp):
TTTTTTTAAATTTAAAATATTTTTA
Found at i:9112727 original size:24 final size:22
Alignment explanation
Indices: 9112699--9112757 Score: 82
Period size: 25 Copynumber: 2.5 Consensus size: 22
9112689 TGATAAAATC
9112699 ATTTTTATTTTTTAAATTTAAA
1 ATTTTTATTTTTTAAATTTAAA
9112721 GAGTTTTTATTTTTTTAAATTTAAA
1 -A-TTTTTA-TTTTTTAAATTTAAA
*
9112746 ATTTTCATTTTT
1 ATTTTTATTTTT
9112758 ATGTTCTTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
22 5 0.15
23 6 0.18
24 7 0.21
25 15 0.45
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (22 bp):
ATTTTTATTTTTTAAATTTAAA
Found at i:9117421 original size:46 final size:46
Alignment explanation
Indices: 9117354--9117528 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
9117344 TGTAACCCAC
* *
9117354 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
* * * *
9117400 CCATAAGTGAACTAGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCAT
* * *
9117450 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
*
9117493 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
9117529 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 2 0.02
46 61 0.57
47 27 0.25
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
Found at i:9117474 original size:93 final size:93
Alignment explanation
Indices: 9117361--9117532 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
9117351 CACCCATAAG
* * *
9117361 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTAGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTAGGACTCAACTCA
9117426 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
9117454 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTAGGACTCAACTCA
9117519 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
9117533 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTAGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:9119165 original size:20 final size:20
Alignment explanation
Indices: 9119140--9119186 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
9119130 TGCGCCTCCC
9119140 TCAGAATCGACTGCCTCAAA
1 TCAGAATCGACTGCCTCAAA
9119160 TCAGAATCGACTGCCTCAAA
1 TCAGAATCGACTGCCTCAAA
9119180 TCAGAAT
1 TCAGAAT
9119187 AATTTAGTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.36, C:0.28, G:0.15, T:0.21
Consensus pattern (20 bp):
TCAGAATCGACTGCCTCAAA
Found at i:9119579 original size:21 final size:19
Alignment explanation
Indices: 9119528--9119580 Score: 56
Period size: 21 Copynumber: 2.7 Consensus size: 19
9119518 TAATTATTTT
9119528 TATGAATGTTTTG-AGGTC
1 TATGAATGTTTTGTAGGTC
*
9119546 TATGATATG-TTTGTAGGATTG
1 TATGA-ATGTTTTGTAGG--TC
9119567 TATGAATGTTTTGT
1 TATGAATGTTTTGT
9119581 TAAGAAATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
18 9 0.31
19 6 0.21
20 3 0.10
21 11 0.38
ACGTcount: A:0.23, C:0.02, G:0.26, T:0.49
Consensus pattern (19 bp):
TATGAATGTTTTGTAGGTC
Found at i:9120699 original size:42 final size:42
Alignment explanation
Indices: 9120642--9120814 Score: 170
Period size: 42 Copynumber: 4.1 Consensus size: 42
9120632 ACATTAGGGT
* * *
9120642 TATGAG-TTTTCGTGTAATACCATATCTAGGATATGGCATCGT
1 TATGAGATTTT-GTGTAAGACCATATCTGGGATATGGCATCGA
* * *
9120684 TATGAGATTTTGTGTAAGACCATGTTTGGGACATGGCATCGA
1 TATGAGATTTTGTGTAAGACCATATCTGGGATATGGCATCGA
* * * *
9120726 TATGAGA-ATGGTGTAAGACCATAGCTGGGCTATTGGCATCGA
1 TATGAGATTTTGTGTAAGACCATATCTGGGATA-TGGCATCGA
**** * *
9120768 TATGAGATCCCATGTAAGACCATATCTGGGATATGGTATTGA
1 TATGAGATTTTGTGTAAGACCATATCTGGGATATGGCATCGA
9120810 TATGA
1 TATGA
9120815 TCTATGTATA
Statistics
Matches: 107, Mismatches: 21, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
41 18 0.17
42 66 0.62
43 23 0.21
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.32
Consensus pattern (42 bp):
TATGAGATTTTGTGTAAGACCATATCTGGGATATGGCATCGA
Found at i:9128291 original size:42 final size:42
Alignment explanation
Indices: 9128245--9128397 Score: 166
Period size: 42 Copynumber: 3.6 Consensus size: 42
9128235 TAAGTTTATG
* ** * *
9128245 TGTAAGACCATATTTGGGATATGGCATCTTTATGAGATTTCG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATATCA
* * *
9128287 TGTAAGACCATGTCTAGGACATGGCATCGATATGAGA-ATCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATATCA
* **
9128328 TGTAAGACCATAGCTAGGG-TATTGGCATCGATATGAGATCCCA
1 TGTAAGACCATATCT-GGGATA-TGGCATCGATATGAGATATCA
*
9128371 TGTAAGCCCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
9128398 TGGAATGATT
Statistics
Matches: 91, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
41 16 0.18
42 58 0.64
43 17 0.19
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATATCA
Found at i:9133162 original size:20 final size:22
Alignment explanation
Indices: 9133123--9133167 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
9133113 CTGACAATAC
*
9133123 TTTGATAAAATCATGTTCAGTTA
1 TTTGATAAAATCA-GTTCAGGTA
9133146 TTTGAT-AAATC-GTTCAGGTA
1 TTTGATAAAATCAGTTCAGGTA
9133166 TT
1 TT
9133168 GTAAAACATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 10 0.48
22 5 0.24
23 6 0.29
ACGTcount: A:0.31, C:0.09, G:0.16, T:0.44
Consensus pattern (22 bp):
TTTGATAAAATCAGTTCAGGTA
Found at i:9133310 original size:13 final size:13
Alignment explanation
Indices: 9133294--9133319 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9133284 ATTTTCCAAA
9133294 AAAACCATTTGTT
1 AAAACCATTTGTT
9133307 AAAACCATTTGTT
1 AAAACCATTTGTT
9133320 TGCGTAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (13 bp):
AAAACCATTTGTT
Found at i:9134159 original size:18 final size:17
Alignment explanation
Indices: 9134136--9134180 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 17
9134126 TAGAATTCTG
* *
9134136 GGCCCATATGTCCGTGTT
1 GGCCCATACGTCCCTG-T
*
9134154 GGCCCACACGTCCCTGT
1 GGCCCATACGTCCCTGT
9134171 GGCCCATACG
1 GGCCCATACG
9134181 CCCAAATTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
17 10 0.43
18 13 0.57
ACGTcount: A:0.13, C:0.38, G:0.27, T:0.22
Consensus pattern (17 bp):
GGCCCATACGTCCCTGT
Found at i:9134206 original size:31 final size:32
Alignment explanation
Indices: 9134168--9134243 Score: 127
Period size: 31 Copynumber: 2.4 Consensus size: 32
9134158 CACACGTCCC
*
9134168 TGTGGCCCATACGCCCAAATTGG-CTTGCCCG
1 TGTGGCCCACACGCCCAAATTGGCCTTGCCCG
*
9134199 TGTGGCCCACATGCCCAAATTGGCCTTGCCCG
1 TGTGGCCCACACGCCCAAATTGGCCTTGCCCG
9134231 TGTGGCCCACACG
1 TGTGGCCCACACG
9134244 GCTTAGCCAA
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
31 21 0.51
32 20 0.49
ACGTcount: A:0.16, C:0.37, G:0.26, T:0.21
Consensus pattern (32 bp):
TGTGGCCCACACGCCCAAATTGGCCTTGCCCG
Found at i:9137812 original size:11 final size:12
Alignment explanation
Indices: 9137796--9137824 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
9137786 AATTTGTGAG
9137796 TTATAAAAA-TA
1 TTATAAAAAGTA
9137807 TTATAAAAAGTA
1 TTATAAAAAGTA
9137819 TTATAA
1 TTATAA
9137825 TATACTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 9 0.53
12 8 0.47
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (12 bp):
TTATAAAAAGTA
Found at i:9146155 original size:29 final size:31
Alignment explanation
Indices: 9146106--9146164 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 31
9146096 AATGTGTATC
* *
9146106 TATTTATTTGATGGATGAAAT-T-GAGATAG
1 TATTTATTTAATAGATGAAATGTGGAGATAG
9146135 TATTTATTATAATAGAT-AAATGTGGAGATA
1 TATTTATT-TAATAGATGAAATGTGGAGATA
9146165 TTAAATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
29 12 0.48
30 7 0.28
31 6 0.24
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (31 bp):
TATTTATTTAATAGATGAAATGTGGAGATAG
Found at i:9153209 original size:29 final size:31
Alignment explanation
Indices: 9153160--9153218 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 31
9153150 AATGTGTATT
* *
9153160 TATTTATTTGATGGATGAAAT-T-GAGATAG
1 TATTTATTTAATAGATGAAATGTGGAGATAG
9153189 TATTTATTATAATAGAT-AAATGTGGAGATA
1 TATTTATT-TAATAGATGAAATGTGGAGATA
9153219 TTAAATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
29 12 0.48
30 7 0.28
31 6 0.24
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (31 bp):
TATTTATTTAATAGATGAAATGTGGAGATAG
Found at i:9156882 original size:57 final size:58
Alignment explanation
Indices: 9156770--9156883 Score: 167
Period size: 57 Copynumber: 2.0 Consensus size: 58
9156760 GAAATGGAGA
* * **
9156770 AAATGGAGAAACGAGAAACATTTGGAAATGATTATGGTTTTCTCCAACATGAAAATGG
1 AAATGGAGAAACGAGAAACATTTGGAAATGAATATGGTTTTCTCCAAAACCAAAATGG
* *
9156828 AAATGGAGAAATG-GAATCATTTGGAAATGAATATGGTTTTCTCCAAAACCAAAATG
1 AAATGGAGAAACGAGAAACATTTGGAAATGAATATGGTTTTCTCCAAAACCAAAATG
9156884 AAAAAGAAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
57 38 0.76
58 12 0.24
ACGTcount: A:0.42, C:0.11, G:0.21, T:0.26
Consensus pattern (58 bp):
AAATGGAGAAACGAGAAACATTTGGAAATGAATATGGTTTTCTCCAAAACCAAAATGG
Found at i:9160233 original size:26 final size:26
Alignment explanation
Indices: 9160204--9160256 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
9160194 GTGAGTTCCA
9160204 AAACATAATGAGTACATAGAAGTCTT
1 AAACATAATGAGTACATAGAAGTCTT
9160230 AAACATAATGAGTACATAGAAGTCTT
1 AAACATAATGAGTACATAGAAGTCTT
9160256 A
1 A
9160257 CTCTTAACAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.47, C:0.11, G:0.15, T:0.26
Consensus pattern (26 bp):
AAACATAATGAGTACATAGAAGTCTT
Found at i:9160964 original size:6 final size:7
Alignment explanation
Indices: 9160945--9160975 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
9160935 AAATGAGACA
9160945 AATTTTT
1 AATTTTT
9160952 AATTTTT
1 AATTTTT
9160959 AATTTTT
1 AATTTTT
9160966 AATTTTT
1 AATTTTT
9160973 AAT
1 AAT
9160976 AGAAAGCTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (7 bp):
AATTTTT
Found at i:9164595 original size:78 final size:77
Alignment explanation
Indices: 9164438--9164588 Score: 187
Period size: 78 Copynumber: 1.9 Consensus size: 77
9164428 TGAATATTTC
* *
9164438 AAATCCTAAGATTACATTATTATGCCCCGCAAGAATGACAGTCATGAAAGCAGCAATCTTGAATT
1 AAATCCTAAGATTACATTATTATGCCCCACAAGAATGACAGTCATGAAAGCAACAATCTTGAATT
*
9164503 GATGGTGACAAA
66 GATGATGACAAA
* * * ** * *
9164515 AAATCCTAAGATTACGTTATTATGCTCTCACAAGATTGATGGTCA-GTAGAGCAACAATCTTGGA
1 AAATCCTAAGATTACATTATTATGC-CCCACAAGAATGACAGTCATG-AAAGCAACAATCTTGAA
9164579 TTGATGATGA
64 TTGATGATGA
9164589 TGAAAAAAGC
Statistics
Matches: 62, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
77 25 0.40
78 37 0.60
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (77 bp):
AAATCCTAAGATTACATTATTATGCCCCACAAGAATGACAGTCATGAAAGCAACAATCTTGAATT
GATGATGACAAA
Found at i:9178878 original size:20 final size:20
Alignment explanation
Indices: 9178855--9178945 Score: 76
Period size: 21 Copynumber: 4.5 Consensus size: 20
9178845 TTAATACTTG
9178855 TAAGGATTTATCAATATTTC
1 TAAGGATTTATCAATATTTC
* *
9178875 TAA-GATTTTTGCCAATATTCC
1 TAAGGATTTAT--CAATATTTC
* * *
9178896 TAAGGCTTTACCAAAATTTC
1 TAAGGATTTATCAATATTTC
* *
9178916 TAAAGGATTTAACAATGTTTC
1 T-AAGGATTTATCAATATTTC
*
9178937 TAAAGATTT
1 TAAGGATTT
9178946 CCCTTGGTGC
Statistics
Matches: 55, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
19 6 0.11
20 18 0.33
21 27 0.49
22 4 0.07
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.41
Consensus pattern (20 bp):
TAAGGATTTATCAATATTTC
Found at i:9186325 original size:17 final size:20
Alignment explanation
Indices: 9186303--9186345 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
9186293 TTGTATTTAT
9186303 TATTTAA-AA-TTT-TGATG
1 TATTTAATAAGTTTATGATG
*
9186320 TATTTAATAAGTTTATGTTG
1 TATTTAATAAGTTTATGATG
9186340 TATTTA
1 TATTTA
9186346 TATTTTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 7 0.32
18 2 0.09
19 3 0.14
20 10 0.45
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.56
Consensus pattern (20 bp):
TATTTAATAAGTTTATGATG
Found at i:9209652 original size:20 final size:21
Alignment explanation
Indices: 9209620--9209670 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
9209610 TGTCAGCATT
* *
9209620 TAAAAAA-AATTTAAAA-TCA
1 TAAAAAATATTTTAAAATTAA
9209639 TAAAAAATATTTTAAAATTAA
1 TAAAAAATATTTTAAAATTAA
9209660 TAAAAATATAT
1 TAAAAA-ATAT
9209671 ACATATAATG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 7 0.26
20 8 0.30
21 8 0.30
22 4 0.15
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (21 bp):
TAAAAAATATTTTAAAATTAA
Found at i:9209721 original size:10 final size:10
Alignment explanation
Indices: 9209706--9209742 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
9209696 TGGACAATTG
9209706 TAAAAATTAT
1 TAAAAATTAT
*
9209716 TAAAAATTAC
1 TAAAAATTAT
9209726 TAAAAATTAT
1 TAAAAATTAT
*
9209736 AAAAAAT
1 TAAAAAT
9209743 AAATTTGTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (10 bp):
TAAAAATTAT
Found at i:9209770 original size:24 final size:25
Alignment explanation
Indices: 9209716--9209777 Score: 67
Period size: 24 Copynumber: 2.6 Consensus size: 25
9209706 TAAAAATTAT
*
9209716 TAAAAATTACTAAAAATTATAAAAA
1 TAAAAATTACTAAAAATAATAAAAA
* **
9209741 -ATAAATTTGTAAAAA-AATAAAAA
1 TAAAAATTACTAAAAATAATAAAAA
9209764 TAAAAATTA-TAAAA
1 TAAAAATTACTAAAA
9209778 TTCAAGGAGA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
23 12 0.40
24 18 0.60
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (25 bp):
TAAAAATTACTAAAAATAATAAAAA
Done.