Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 33 of 250
Found at i:9895502 original size:25 final size:23
Alignment explanation
Indices: 9895469--9895585 Score: 108
Period size: 23 Copynumber: 4.6 Consensus size: 23
9895459 AAATGTCCAA
*
9895469 CCAAAACACACCAGTATAGTCCT
1 CCAAAACACACCAGTATAATCCT
*
9895492 CCAAAACACACTAGTATAATCCT
1 CCAAAACACACCAGTATAATCCT
9895515 CCAAAACACACCAGTATCATATAATCCT
1 CCAAAACACACCAG-----TATAATCCT
*
9895543 CCCAAACACACCAGAATAATATAATCCAT
1 CCAAAACACACCAG-----TATAATCC-T
9895572 CCAAAACACACCAG
1 CCAAAACACACCAG
9895586 AATAGCACAA
Statistics
Matches: 81, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
23 34 0.42
28 33 0.41
29 14 0.17
ACGTcount: A:0.44, C:0.33, G:0.05, T:0.17
Consensus pattern (23 bp):
CCAAAACACACCAGTATAATCCT
Found at i:9895588 original size:29 final size:28
Alignment explanation
Indices: 9895506--9895589 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
9895496 AACACACTAG
* *
9895506 TATAATCCTCCAAAACACACCAGTATCA
1 TATAATCCTCCAAAACACACCAGAATAA
*
9895534 TATAATCCTCCCAAACACACCAGAATAA
1 TATAATCCTCCAAAACACACCAGAATAA
9895562 TATAATCCATCCAAAACACACCAGAATA
1 TATAATCC-TCCAAAACACACCAGAATA
9895590 GCACAAAGTG
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 33 0.65
29 18 0.35
ACGTcount: A:0.46, C:0.31, G:0.04, T:0.19
Consensus pattern (28 bp):
TATAATCCTCCAAAACACACCAGAATAA
Found at i:9908926 original size:29 final size:29
Alignment explanation
Indices: 9908884--9909017 Score: 130
Period size: 29 Copynumber: 4.6 Consensus size: 29
9908874 CACCATCAGT
*
9908884 ACATAGTACCTGATAAATATAACACCGAC
1 ACATAGTACCTGATAAATATAACACCAAC
* *
9908913 ACATAGTGCCTGATAAATATAACACTGAATC
1 ACATAGTACCTGATAAATATAACAC-CAA-C
** * *
9908944 A-A-AGTACCTGAT-AATATGTTCATCAAT
1 ACATAGTACCTGATAAATAT-AACACCAAC
*
9908971 ACATAGTACCTGATCAATATAATCACCAAC
1 ACATAGTACCTGATAAATATAA-CACCAAC
*
9909001 ACATAGTGCCTGATAAA
1 ACATAGTACCTGATAAA
9909018 CCCTAATGAC
Statistics
Matches: 83, Mismatches: 15, Indels: 13
0.75 0.14 0.12
Matches are distributed among these distances:
27 1 0.01
28 8 0.10
29 45 0.54
30 27 0.33
31 2 0.02
ACGTcount: A:0.43, C:0.21, G:0.11, T:0.25
Consensus pattern (29 bp):
ACATAGTACCTGATAAATATAACACCAAC
Found at i:9913540 original size:21 final size:20
Alignment explanation
Indices: 9913502--9913551 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 20
9913492 TTTAGCTCTC
*
9913502 ATGAGCTTCAATTAACTCAT
1 ATGAGTTTCAATTAACTCAT
* *
9913522 ATGAGTTTCCATTCAACTCCT
1 ATGAGTTTCAATT-AACTCAT
9913543 ATGAGTTTC
1 ATGAGTTTC
9913552 TGTTCAACCC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.28, C:0.22, G:0.12, T:0.38
Consensus pattern (20 bp):
ATGAGTTTCAATTAACTCAT
Found at i:9913557 original size:21 final size:21
Alignment explanation
Indices: 9913515--9913576 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
9913505 AGCTTCAATT
* **
9913515 AACTCATATGAGTTTCCATTC
1 AACTCCTATGAGTTTCTGTTC
9913536 AACTCCTATGAGTTTCTGTTC
1 AACTCCTATGAGTTTCTGTTC
* *
9913557 AAC-CCTTACGGGTTTCTGTT
1 AACTCC-TATGAGTTTCTGTT
9913577 AGCACTTATG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
20 2 0.06
21 33 0.94
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (21 bp):
AACTCCTATGAGTTTCTGTTC
Found at i:9921437 original size:13 final size:13
Alignment explanation
Indices: 9921383--9921452 Score: 65
Period size: 13 Copynumber: 5.5 Consensus size: 13
9921373 TTATTCAATA
*
9921383 TTAAAATTTTATA
1 TTAAAATTTTATT
9921396 TTAAAATTTTTATTT
1 TTAAAA-TTTTA-TT
*
9921411 TTCAAA-TTTATT
1 TTAAAATTTTATT
*
9921423 TTAAAATTTTCTT
1 TTAAAATTTTATT
*
9921436 TT--AATTTTAGT
1 TTAAAATTTTATT
9921447 TTAAAA
1 TTAAAA
9921453 ATATTAATAA
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
11 9 0.20
12 7 0.15
13 19 0.41
14 5 0.11
15 6 0.13
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (13 bp):
TTAAAATTTTATT
Found at i:9921665 original size:13 final size:13
Alignment explanation
Indices: 9921647--9921673 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
9921637 TACTTGTTAT
9921647 AATTAAAAAATTC
1 AATTAAAAAATTC
9921660 AATTAAAAAATTC
1 AATTAAAAAATTC
9921673 A
1 A
9921674 CTTTTTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (13 bp):
AATTAAAAAATTC
Found at i:9929782 original size:16 final size:16
Alignment explanation
Indices: 9929761--9929794 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
9929751 AAATTAATAA
9929761 AGTTAGAATGGTTAAC
1 AGTTAGAATGGTTAAC
9929777 AGTTAGAATGGTTAAC
1 AGTTAGAATGGTTAAC
9929793 AG
1 AG
9929795 CTCCTTTCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.38, C:0.06, G:0.26, T:0.29
Consensus pattern (16 bp):
AGTTAGAATGGTTAAC
Found at i:9935826 original size:17 final size:17
Alignment explanation
Indices: 9935804--9935839 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
9935794 GTAAAATACG
*
9935804 TTAGCATCTATTTTCAT
1 TTAGCATCCATTTTCAT
9935821 TTAGCATCCATTTTCAT
1 TTAGCATCCATTTTCAT
9935838 TT
1 TT
9935840 TCTTCTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.22, C:0.19, G:0.06, T:0.53
Consensus pattern (17 bp):
TTAGCATCCATTTTCAT
Found at i:9957820 original size:54 final size:54
Alignment explanation
Indices: 9957733--9957898 Score: 253
Period size: 54 Copynumber: 3.1 Consensus size: 54
9957723 ATTCATCCAC
* *
9957733 ATTTATAGTTAAATCTAATTTAAGTTAGTTTAAATA-TTAACTTTTATTTTTATA
1 ATTTATAGTTAAATCAAATTTAAGTTAGTTTAAATATTTAA-TTTAATTTTTATA
* *
9957787 ATTTTTAGTTAAATCAAATTTAAGTTAGTTTAAATATTTAATTTAATTTATATA
1 ATTTATAGTTAAATCAAATTTAAGTTAGTTTAAATATTTAATTTAATTTTTATA
* * *
9957841 ATTTATAGTTAAATCGAATTTAAATTAGTTTAAACATTTAATTTAATTTTTATA
1 ATTTATAGTTAAATCAAATTTAAGTTAGTTTAAATATTTAATTTAATTTTTATA
9957895 ATTT
1 ATTT
9957899 GTATAAAAAT
Statistics
Matches: 102, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 98 0.96
55 4 0.04
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.52
Consensus pattern (54 bp):
ATTTATAGTTAAATCAAATTTAAGTTAGTTTAAATATTTAATTTAATTTTTATA
Found at i:9957827 original size:18 final size:19
Alignment explanation
Indices: 9957803--9957852 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
9957793 AGTTAAATCA
*
9957803 AATTTAAGTTAGTTTAAAT
1 AATTTAAGTTAATTTAAAT
* *
9957822 -ATTTAATTTAATTTATAT
1 AATTTAAGTTAATTTAAAT
9957840 AATTTATAGTTAA
1 AATTTA-AGTTAA
9957853 ATCGAATTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
18 15 0.60
19 5 0.20
20 5 0.20
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (19 bp):
AATTTAAGTTAATTTAAAT
Found at i:9958985 original size:24 final size:21
Alignment explanation
Indices: 9958941--9958986 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 21
9958931 AGTAAAACAC
*
9958941 AAATAATATTTATTTAATAGA
1 AAATAATATTTATCTAATAGA
9958962 AAATAATATTCTACTCTAAGTAGA
1 AAATAATATT-TA-TCTAA-TAGA
9958986 A
1 A
9958987 TGGGGTGGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 10 0.48
22 2 0.10
23 4 0.19
24 5 0.24
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.37
Consensus pattern (21 bp):
AAATAATATTTATCTAATAGA
Found at i:9959307 original size:105 final size:105
Alignment explanation
Indices: 9959125--9959334 Score: 334
Period size: 105 Copynumber: 2.0 Consensus size: 105
9959115 AAGTTTTCGG
*
9959125 ATCAACTCGAATAAAAAATTAAGTTTTTCAATTTAACTCGAATATGAATTACATAATTCGAGTTA
1 ATCAACTCGAATAAAAAATTAAGTTTTTCAATTTAACTCGAATATGAATTACACAATTCGAGTTA
*
9959190 TCTGAAAATCCGAATAAGAAA-TGACAAAACTACGTCGTTT
66 TCTCAAAATCCGAATAAGAAACT-ACAAAACTACGTCGTTT
* * * *
9959230 ATCAACTTGAATAAAAAATTAAGTTTTTCGATTTAATTCGAATATGAATTATACAATTCGAGTTA
1 ATCAACTCGAATAAAAAATTAAGTTTTTCAATTTAACTCGAATATGAATTACACAATTCGAGTTA
9959295 TC-CAAAACTCCGAATAAGAAACTACAAAACTACGTCGTTT
66 TCTCAAAA-TCCGAATAAGAAACTACAAAACTACGTCGTTT
9959335 GGATAAATAT
Statistics
Matches: 97, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
104 4 0.04
105 92 0.95
106 1 0.01
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.32
Consensus pattern (105 bp):
ATCAACTCGAATAAAAAATTAAGTTTTTCAATTTAACTCGAATATGAATTACACAATTCGAGTTA
TCTCAAAATCCGAATAAGAAACTACAAAACTACGTCGTTT
Found at i:9964294 original size:30 final size:30
Alignment explanation
Indices: 9964258--9964317 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
9964248 AATTAGTGAT
9964258 TAATTAAGTTATAAGGACAAAATCATAAAG
1 TAATTAAGTTATAAGGACAAAATCATAAAG
* *
9964288 TAATTAAGTTATAGGGACTAAATCATAAAG
1 TAATTAAGTTATAAGGACAAAATCATAAAG
9964318 GTGGTAAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.50, C:0.07, G:0.15, T:0.28
Consensus pattern (30 bp):
TAATTAAGTTATAAGGACAAAATCATAAAG
Found at i:9972230 original size:22 final size:20
Alignment explanation
Indices: 9972205--9972257 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 20
9972195 AAGCTCACCC
9972205 ATATTATTTTTTAAAAATATTT
1 ATATTATTTTTT--AAATATTT
*
9972227 ATATTATATTATTTTAATATTT
1 ATATTAT-TT-TTTAAATATTT
9972249 A-ATTATTTT
1 ATATTATTTT
9972258 ATTTTATTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
19 1 0.04
20 2 0.07
21 5 0.18
22 15 0.54
23 2 0.07
24 3 0.11
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
ATATTATTTTTTAAATATTT
Found at i:9972259 original size:21 final size:22
Alignment explanation
Indices: 9972220--9972263 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
9972210 ATTTTTTAAA
9972220 AATATTTATATTATATTATTTT
1 AATATTTATATTATATTATTTT
*
9972242 AATATTTA-ATTATTTTATTTT
1 AATATTTATATTATATTATTTT
9972263 A
1 A
9972264 TTTTTTGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (22 bp):
AATATTTATATTATATTATTTT
Found at i:9973525 original size:20 final size:20
Alignment explanation
Indices: 9973500--9973561 Score: 88
Period size: 20 Copynumber: 3.1 Consensus size: 20
9973490 TTGAAATGTT
9973500 AACAGAGGCACCGAAGTGCA
1 AACAGAGGCACCGAAGTGCA
* *
9973520 AACAGAAGCACCGAAGTGTA
1 AACAGAGGCACCGAAGTGCA
* *
9973540 AACAAAGGCACCAAAGTGCA
1 AACAGAGGCACCGAAGTGCA
9973560 AA
1 AA
9973562 TCCCATACAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.47, C:0.23, G:0.24, T:0.06
Consensus pattern (20 bp):
AACAGAGGCACCGAAGTGCA
Found at i:9982387 original size:18 final size:18
Alignment explanation
Indices: 9982364--9982401 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
9982354 AAATCAAGTC
9982364 TATCATATATAAGAATTT
1 TATCATATATAAGAATTT
9982382 TATCATATATAAGAATTT
1 TATCATATATAAGAATTT
9982400 TA
1 TA
9982402 GTCTTGCTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (18 bp):
TATCATATATAAGAATTT
Found at i:9984116 original size:22 final size:22
Alignment explanation
Indices: 9984089--9984153 Score: 69
Period size: 24 Copynumber: 2.9 Consensus size: 22
9984079 TATCTACACT
9984089 TTTGAGTGATTTATCCACATCG
1 TTTGAGTGATTTATCCACATCG
* *
9984111 TTTGAGTAGCTTT-TCTGTACATCG
1 TTTGAGT-GATTTATC--CACATCG
*
9984135 TTTGAGTGGTTTATCCACA
1 TTTGAGTGATTTATCCACA
9984154 CCGCACTAGC
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
22 12 0.34
23 8 0.23
24 15 0.43
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.43
Consensus pattern (22 bp):
TTTGAGTGATTTATCCACATCG
Found at i:9988253 original size:9 final size:9
Alignment explanation
Indices: 9988241--9988303 Score: 60
Period size: 9 Copynumber: 7.1 Consensus size: 9
9988231 ATACTTTTTG
9988241 ATTTTTTAT
1 ATTTTTTAT
9988250 ATTTTTTCA-
1 ATTTTTT-AT
9988259 ATTTTTTAT
1 ATTTTTTAT
*
9988268 ATTTTATAT
1 ATTTTTTAT
*
9988277 AATGTTTTAT
1 -ATTTTTTAT
9988287 A--TTTTAT
1 ATTTTTTAT
*
9988294 ATTTTATAT
1 ATTTTTTAT
9988303 A
1 A
9988304 ATTGATATAT
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
7 7 0.16
8 1 0.02
9 29 0.64
10 8 0.18
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.68
Consensus pattern (9 bp):
ATTTTTTAT
Found at i:9988256 original size:18 final size:18
Alignment explanation
Indices: 9988212--9988291 Score: 70
Period size: 19 Copynumber: 4.3 Consensus size: 18
9988202 TATATATATA
* *
9988212 ATTTTTTTAAAATTTTCAT
1 ATTTTTTT-AATTTTTTAT
* *
9988231 ATACTTTTTGATTTTTTAT
1 AT-TTTTTTAATTTTTTAT
*
9988250 ATTTTTTCAATTTTTTAT
1 ATTTTTTTAATTTTTTAT
* *
9988268 ATTTTATATAATGTTTTAT
1 ATTTT-TTTAATTTTTTAT
9988287 ATTTT
1 ATTTT
9988292 ATATTTTATA
Statistics
Matches: 49, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
18 18 0.37
19 26 0.53
20 5 0.10
ACGTcount: A:0.26, C:0.04, G:0.03, T:0.68
Consensus pattern (18 bp):
ATTTTTTTAATTTTTTAT
Found at i:9988272 original size:7 final size:7
Alignment explanation
Indices: 9988262--9988302 Score: 50
Period size: 7 Copynumber: 6.1 Consensus size: 7
9988252 TTTTTCAATT
9988262 TTTTATA
1 TTTTATA
9988269 TTTTATA
1 TTTTATA
* *
9988276 --TAATG
1 TTTTATA
9988281 TTTTATA
1 TTTTATA
9988288 TTTTATA
1 TTTTATA
9988295 TTTTATA
1 TTTTATA
9988302 T
1 T
9988303 AATTGATATA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
5 3 0.11
7 25 0.89
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.68
Consensus pattern (7 bp):
TTTTATA
Found at i:9988284 original size:19 final size:20
Alignment explanation
Indices: 9988244--9988295 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 20
9988234 CTTTTTGATT
*
9988244 TTTTATATTTT-T-TCAATT
1 TTTTATATTTTATATCAATG
9988262 TTTTATATTTTATAT-AATG
1 TTTTATATTTTATATCAATG
9988281 TTTTATATTTTATAT
1 TTTTATATTTTATAT
9988296 TTTATATAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
18 11 0.35
19 19 0.61
20 1 0.03
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (20 bp):
TTTTATATTTTATATCAATG
Found at i:9988372 original size:20 final size:19
Alignment explanation
Indices: 9988345--9988406 Score: 67
Period size: 18 Copynumber: 3.3 Consensus size: 19
9988335 AAAATTTAAT
9988345 ATTTTTTTGAGTTTTTATATA
1 ATTTTTTT-A-TTTTTATATA
*
9988366 ATTTTTTTTATTTCTATATA
1 A-TTTTTTTATTTTTATATA
9988386 A-TTTTTTATTTTT-TAT-
1 ATTTTTTTATTTTTATATA
9988402 ATTTT
1 ATTTT
9988407 ATATAATGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
16 1 0.03
17 6 0.16
18 11 0.30
20 10 0.27
21 2 0.05
22 7 0.19
ACGTcount: A:0.23, C:0.02, G:0.03, T:0.73
Consensus pattern (19 bp):
ATTTTTTTATTTTTATATA
Found at i:9994059 original size:31 final size:32
Alignment explanation
Indices: 9994024--9994090 Score: 82
Period size: 31 Copynumber: 2.1 Consensus size: 32
9994014 TTGATAAGTC
*
9994024 TTTATTTGAGCACTTTTAAAAAGGTTTGA-CA
1 TTTATTTGAGCACTTTCAAAAAGGTTTGACCA
** * *
9994055 TTTATTTGATTACTTTCGAAAATGTTTGACCA
1 TTTATTTGAGCACTTTCAAAAAGGTTTGACCA
9994087 TTTA
1 TTTA
9994091 AAAAGGTTTG
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
31 24 0.80
32 6 0.20
ACGTcount: A:0.30, C:0.10, G:0.13, T:0.46
Consensus pattern (32 bp):
TTTATTTGAGCACTTTCAAAAAGGTTTGACCA
Found at i:9998781 original size:34 final size:35
Alignment explanation
Indices: 9998735--9998804 Score: 106
Period size: 34 Copynumber: 2.0 Consensus size: 35
9998725 TTGGTATTAA
*
9998735 AATTTCTATAAAATTTATGT-AAAATCAAACAATC
1 AATTTCTATAAAATTTATATAAAAATCAAACAATC
* *
9998769 AATTTCTTTAAAATTTTTATAAAAATCAAACAATC
1 AATTTCTATAAAATTTATATAAAAATCAAACAATC
9998804 A
1 A
9998805 GAAAACAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
34 17 0.53
35 15 0.47
ACGTcount: A:0.50, C:0.11, G:0.01, T:0.37
Consensus pattern (35 bp):
AATTTCTATAAAATTTATATAAAAATCAAACAATC
Found at i:10002087 original size:27 final size:27
Alignment explanation
Indices: 10002053--10002107 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
10002043 GATTGTAGGC
*
10002053 TTTCTCTAAGTCAACTTTGATTGCCAA
1 TTTCTCTAAATCAACTTTGATTGCCAA
10002080 TTTCTCTAAATCAACTTTGATTGCCAA
1 TTTCTCTAAATCAACTTTGATTGCCAA
10002107 T
1 T
10002108 GATGTGACTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.27, C:0.22, G:0.09, T:0.42
Consensus pattern (27 bp):
TTTCTCTAAATCAACTTTGATTGCCAA
Found at i:10007724 original size:91 final size:91
Alignment explanation
Indices: 10007625--10007795 Score: 222
Period size: 94 Copynumber: 1.8 Consensus size: 91
10007615 CTATACGTGT
10007625 CGATGCCATATC-CTAGACATGGTCTTACACTGACACATC-TCGTAGCT-ATGCATGTCCCAGAC
1 CGATGCCATATCTC-AGACATGGTCTTACACTGACAC-TCAT-GTAGCTGATGCATGTCCCAGAC
10007687 ATGTCTTACACTAGCTCTCGTCTCAATGC
63 ATGTCTTACACTAGCTCTCGTCTCAATGC
* * * * *
10007716 CGATGCCATGTCTCAGACATGGTCTTACGCTGGCTCTCAAAATGTGGCTGATGCATGTCCCAGAC
1 CGATGCCATATCTCAGACATGGTCTTACACTGACACTC---ATGTAGCTGATGCATGTCCCAGAC
10007781 ATGTCTTACACTAGC
63 ATGTCTTACACTAGC
10007796 ACACAAGTAA
Statistics
Matches: 69, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
90 2 0.03
91 30 0.43
92 1 0.01
93 5 0.07
94 31 0.45
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (91 bp):
CGATGCCATATCTCAGACATGGTCTTACACTGACACTCATGTAGCTGATGCATGTCCCAGACATG
TCTTACACTAGCTCTCGTCTCAATGC
Found at i:10011905 original size:33 final size:33
Alignment explanation
Indices: 10011864--10011936 Score: 119
Period size: 33 Copynumber: 2.2 Consensus size: 33
10011854 AGAGCCATGA
* *
10011864 AAAACCTTCTCAAAACTAACTTCCTTCACCAAG
1 AAAACCTTCTCAAAACTAACCTCATTCACCAAG
*
10011897 AAAACCTTCTCAAAACTAACCTCATTCATCAAG
1 AAAACCTTCTCAAAACTAACCTCATTCACCAAG
10011930 AAAACCT
1 AAAACCT
10011937 AGCTTTCGGT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.42, C:0.32, G:0.03, T:0.23
Consensus pattern (33 bp):
AAAACCTTCTCAAAACTAACCTCATTCACCAAG
Found at i:10014449 original size:149 final size:150
Alignment explanation
Indices: 10014178--10014456 Score: 452
Period size: 149 Copynumber: 1.9 Consensus size: 150
10014168 AAAAGTCAAT
* * * *
10014178 TACTATCAAATAGTAATTAAGTCATTCATCACAAAGACAAATGACCTGTGACCACATTTACTTTT
1 TACTATCAAATAGTAATTAAGTCATTCATCACAAAAACAAACGACCCGTGACAACATTTACTTTT
* * *
10014243 CATCTATCATGTAATGCTAATGAAAGGTTATCATTTACCCATGTCTTGGGCAATGAATTCCACTA
66 CATCTATCATGTAATGCCAATGAAAGGATATCATTTACCCATGTCTTGGGAAATGAATTCCACTA
10014308 TACTACAGAAGTTGTATACA
131 TACTACAGAAGTTGTATACA
* ** *
10014328 TACTATCAAATAGTAATTAAGTCATTCATCATAAAAATGAACGACCCGTGATAACATTTAC-TTT
1 TACTATCAAATAGTAATTAAGTCATTCATCACAAAAACAAACGACCCGTGACAACATTTACTTTT
10014392 CATCTATCATGTAATGCCAATGAAAGGATATCATTTACCCATGTCTTGGGAAATGAATTCCACTA
66 CATCTATCATGTAATGCCAATGAAAGGATATCATTTACCCATGTCTTGGGAAATGAATTCCACTA
10014457 CTATGAATTA
Statistics
Matches: 118, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
149 65 0.55
150 53 0.45
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32
Consensus pattern (150 bp):
TACTATCAAATAGTAATTAAGTCATTCATCACAAAAACAAACGACCCGTGACAACATTTACTTTT
CATCTATCATGTAATGCCAATGAAAGGATATCATTTACCCATGTCTTGGGAAATGAATTCCACTA
TACTACAGAAGTTGTATACA
Found at i:10015041 original size:21 final size:20
Alignment explanation
Indices: 10014981--10015042 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 20
10014971 TTATGTTTTG
*
10014981 TTAATTAAG-TAAAATATGA
1 TTAATTAAGTTAAAATATAA
10015000 TTAATTAAGATTAAAATATAA
1 TTAATTAAG-TTAAAATATAA
*
10015021 TTAATTAAGTTATAATCATAA
1 TTAATTAAGTTAAAAT-ATAA
10015042 T
1 T
10015043 ATATACTAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
19 9 0.24
20 6 0.16
21 23 0.61
ACGTcount: A:0.52, C:0.02, G:0.06, T:0.40
Consensus pattern (20 bp):
TTAATTAAGTTAAAATATAA
Found at i:10015300 original size:20 final size:21
Alignment explanation
Indices: 10015275--10015313 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
10015265 TTTCCATGAT
10015275 TGTGAAATTGAT-GAAATTGG
1 TGTGAAATTGATAGAAATTGG
10015295 TGTGAAATTGATAGAAATT
1 TGTGAAATTGATAGAAATT
10015314 AAGCTTGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.38, C:0.00, G:0.26, T:0.36
Consensus pattern (21 bp):
TGTGAAATTGATAGAAATTGG
Found at i:10019721 original size:43 final size:43
Alignment explanation
Indices: 10019638--10019724 Score: 108
Period size: 43 Copynumber: 2.0 Consensus size: 43
10019628 AAAAATCGTA
**
10019638 CAATGCCAACGTCCCAGACGTGGTCTTACATGTAGTCACATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACATGTAAACACATAT
10019681 CAATGCC-ACTGTCCCAGACAG-GGTCTTAC-TCGTAAACACATAT
1 CAATGCCAAC-GTCCCAGAC-GTGGTCTTACAT-GTAAACACATAT
10019724 C
1 C
10019725 GGAACCATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
42 3 0.08
43 35 0.90
44 1 0.03
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (43 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACATGTAAACACATAT
Found at i:10021755 original size:6 final size:6
Alignment explanation
Indices: 10021744--10021768 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
10021734 CCATTAGAGG
10021744 ACTTAC ACTTAC ACTTAC ACTTAC A
1 ACTTAC ACTTAC ACTTAC ACTTAC A
10021769 AATACAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.32, G:0.00, T:0.32
Consensus pattern (6 bp):
ACTTAC
Found at i:10022465 original size:19 final size:19
Alignment explanation
Indices: 10022441--10022485 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
10022431 ATTTTGGCAT
*
10022441 TATCTCACAAAATTTTTTA
1 TATCTCACAAAATTTATTA
10022460 TATCTCACAAAATTTATTA
1 TATCTCACAAAATTTATTA
10022479 TATCTCA
1 TATCTCA
10022486 TAATCTACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.38, C:0.18, G:0.00, T:0.44
Consensus pattern (19 bp):
TATCTCACAAAATTTATTA
Found at i:10027906 original size:42 final size:42
Alignment explanation
Indices: 10027805--10027931 Score: 125
Period size: 42 Copynumber: 3.0 Consensus size: 42
10027795 TAAGGCCACA
* *
10027805 TCTGGGACATTGGCATTGACT-TATGATTTACATGTAAGACCATG
1 TCTGGGACATCGGCATCGA-TAT-TGATTT-CATGTAAGACCATG
* * *
10027849 TCTGGGATATCGGCATC-ATATGTGATTTCGTGTAAGACCGTG
1 TCTGGGACATCGGCATCGATAT-TGATTTCATGTAAGACCATG
*
10027891 TCTGGGACAGT-GGCATCGATATTCGATTACATGTAAGACCA
1 TCTGGGACA-TCGGCATCGATATT-GATTTCATGTAAGACCA
10027932 CGTGTAGGAC
Statistics
Matches: 69, Mismatches: 10, Indels: 9
0.78 0.11 0.10
Matches are distributed among these distances:
42 28 0.41
43 27 0.39
44 14 0.20
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (42 bp):
TCTGGGACATCGGCATCGATATTGATTTCATGTAAGACCATG
Found at i:10031954 original size:14 final size:14
Alignment explanation
Indices: 10031935--10031963 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
10031925 CTATGAGGAA
10031935 ATATATTTAATTTT
1 ATATATTTAATTTT
10031949 ATATATTTAATTTT
1 ATATATTTAATTTT
10031963 A
1 A
10031964 ACATTAAACG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
ATATATTTAATTTT
Found at i:10033702 original size:28 final size:28
Alignment explanation
Indices: 10033669--10033722 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
10033659 AGAGAGTATG
10033669 AAATTAGAAA-ACAAGAATA-TTAGTAAAT
1 AAATTAGAAATA-AA-AATATTTAGTAAAT
10033697 AAATTAGAAATAAAAATATTTAGTAA
1 AAATTAGAAATAAAAATATTTAGTAA
10033723 TTAATTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 4 0.17
28 19 0.79
29 1 0.04
ACGTcount: A:0.61, C:0.02, G:0.09, T:0.28
Consensus pattern (28 bp):
AAATTAGAAATAAAAATATTTAGTAAAT
Found at i:10033714 original size:27 final size:26
Alignment explanation
Indices: 10033669--10033741 Score: 73
Period size: 28 Copynumber: 2.8 Consensus size: 26
10033659 AGAGAGTATG
10033669 AAATTAGAAA-ACAAGAATATTAGTAAAT
1 AAATTAGAAATA-AA-AATATTAGT-AAT
10033697 AAATTAGAAATAAAAATATTTAGTAAT
1 AAATTAGAAATAAAAATA-TTAGTAAT
*
10033724 TAATT--AAAT-AAAATATTA
1 AAATTAGAAATAAAAATATTA
10033742 ATATAGATAT
Statistics
Matches: 42, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
23 3 0.07
24 6 0.14
25 4 0.10
27 11 0.26
28 17 0.40
29 1 0.02
ACGTcount: A:0.60, C:0.01, G:0.07, T:0.32
Consensus pattern (26 bp):
AAATTAGAAATAAAAATATTAGTAAT
Found at i:10033792 original size:28 final size:30
Alignment explanation
Indices: 10033743--10033802 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 30
10033733 AAAATATTAA
*
10033743 TATAGATATTTATGTATCAAGT-ATGAAAT
1 TATAGATATTGATGTATCAAGTAATGAAAT
* * *
10033772 TATAG-TATTGATTTATTAAGTAATTAAAT
1 TATAGATATTGATGTATCAAGTAATGAAAT
10033801 TA
1 TA
10033803 AGAAAGTTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 13 0.50
29 13 0.50
ACGTcount: A:0.42, C:0.02, G:0.12, T:0.45
Consensus pattern (30 bp):
TATAGATATTGATGTATCAAGTAATGAAAT
Found at i:10035266 original size:6 final size:6
Alignment explanation
Indices: 10035255--10035279 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
10035245 TTAATGTATA
10035255 TATATT TATATT TATATT TATATT T
1 TATATT TATATT TATATT TATATT T
10035280 GTGACTTGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TATATT
Found at i:10036902 original size:25 final size:25
Alignment explanation
Indices: 10036874--10036930 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
10036864 AGGCATTATG
* * *
10036874 CCACATAGCCTTTATAAGTAACCTA
1 CCACAAAGACTTTACAAGTAACCTA
*
10036899 CCACAAAGACTTTACAGGTAACCTA
1 CCACAAAGACTTTACAAGTAACCTA
*
10036924 CAACAAA
1 CCACAAA
10036931 AGCTTCCTAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.42, C:0.28, G:0.09, T:0.21
Consensus pattern (25 bp):
CCACAAAGACTTTACAAGTAACCTA
Found at i:10037038 original size:50 final size:50
Alignment explanation
Indices: 10036938--10037038 Score: 157
Period size: 50 Copynumber: 2.0 Consensus size: 50
10036928 AAAAGCTTCC
* *
10036938 TAAATCGCCACAAAGGCTTTACAGGTGACTCGCCATAAAGGCTTCCCAAG
1 TAAATCGCCACAAAGGCTTTACAGGTGACTCGCCACAAAGGCTTCACAAG
* * *
10036988 TAAATTGCCACAAAGGCTTTATAGGTGACTCGCCACAAAGGCTTTACAAG
1 TAAATCGCCACAAAGGCTTTACAGGTGACTCGCCACAAAGGCTTCACAAG
10037038 T
1 T
10037039 GACTTACTAC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.23
Consensus pattern (50 bp):
TAAATCGCCACAAAGGCTTTACAGGTGACTCGCCACAAAGGCTTCACAAG
Found at i:10037051 original size:50 final size:50
Alignment explanation
Indices: 10036945--10037054 Score: 148
Period size: 50 Copynumber: 2.2 Consensus size: 50
10036935 TCCTAAATCG
* * *
10036945 CCACAAAGGCTTTACAGGTGACTCGCCATAAAGGCTTCCCAAGTAAATTG
1 CCACAAAGGCTTTACAGGTGACTCGCCACAAAGGCTTCACAAGTAAATTA
* * * *
10036995 CCACAAAGGCTTTATAGGTGACTCGCCACAAAGGCTTTACAAGTGACTTA
1 CCACAAAGGCTTTACAGGTGACTCGCCACAAAGGCTTCACAAGTAAATTA
*
10037045 CTACAAAGGC
1 CCACAAAGGC
10037055 ACTACATAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.22
Consensus pattern (50 bp):
CCACAAAGGCTTTACAGGTGACTCGCCACAAAGGCTTCACAAGTAAATTA
Found at i:10037054 original size:25 final size:25
Alignment explanation
Indices: 10036942--10037042 Score: 121
Period size: 25 Copynumber: 4.0 Consensus size: 25
10036932 GCTTCCTAAA
*
10036942 TCGCCACAAAGGCTTTACAGGTGAC
1 TCGCCACAAAGGCTTTACAAGTGAC
* ** * *
10036967 TCGCCATAAAGGCTTCCCAAGTAAA
1 TCGCCACAAAGGCTTTACAAGTGAC
* * *
10036992 TTGCCACAAAGGCTTTATAGGTGAC
1 TCGCCACAAAGGCTTTACAAGTGAC
10037017 TCGCCACAAAGGCTTTACAAGTGAC
1 TCGCCACAAAGGCTTTACAAGTGAC
10037042 T
1 T
10037043 TACTACAAAG
Statistics
Matches: 59, Mismatches: 17, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 59 1.00
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.23
Consensus pattern (25 bp):
TCGCCACAAAGGCTTTACAAGTGAC
Found at i:10039248 original size:43 final size:43
Alignment explanation
Indices: 10039183--10039349 Score: 167
Period size: 43 Copynumber: 3.9 Consensus size: 43
10039173 AGCTCGTACA
* * * * *
10039183 ATGCC-ATATCCCAGATAAGGTCTTACATGTTATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * *
10039225 ATGCCAATGTCCCAGACATGGTCTTACACGGAATCATATAACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * * *
10039268 ATGCCAATGTCCCAAACATGGTATTACACATAATCACA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT-CG
* * * *
10039311 ATGCCAATGTTCTAGACATGGTCTTACATGCAATCACAT
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAT
10039350 TTCGGTAATC
Statistics
Matches: 100, Mismatches: 22, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
42 6 0.06
43 94 0.94
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:10044578 original size:22 final size:20
Alignment explanation
Indices: 10044541--10044583 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 20
10044531 TATTACTTTA
10044541 TCCATTTTTTTATTTTTATT
1 TCCATTTTTTTATTTTTATT
*
10044561 TCCATTTAATTTTGTTTTTATT
1 TCCATTT--TTTTATTTTTATT
10044583 T
1 T
10044584 TTACTATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 7 0.35
22 13 0.65
ACGTcount: A:0.16, C:0.09, G:0.02, T:0.72
Consensus pattern (20 bp):
TCCATTTTTTTATTTTTATT
Found at i:10049227 original size:25 final size:25
Alignment explanation
Indices: 10049193--10049242 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
10049183 GATGCTAGAG
*
10049193 TAGTGGTGAGGTTCCTTAAGAAACT
1 TAGTGGTGAGATTCCTTAAGAAACT
10049218 TAGTGGTGAGATTCCTTAAGAAACT
1 TAGTGGTGAGATTCCTTAAGAAACT
10049243 CTTCTCTCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.32
Consensus pattern (25 bp):
TAGTGGTGAGATTCCTTAAGAAACT
Found at i:10053095 original size:17 final size:17
Alignment explanation
Indices: 10053062--10053102 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
10053052 TTGAGTTTAA
10053062 TTATTTTCACTTTGTTT
1 TTATTTTCACTTTGTTT
*
10053079 TTCTTTTC-CTTTCGTTT
1 TTATTTTCACTTT-GTTT
10053096 TTATTTT
1 TTATTTT
10053103 TATTTTTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.07, C:0.15, G:0.05, T:0.73
Consensus pattern (17 bp):
TTATTTTCACTTTGTTT
Found at i:10055356 original size:109 final size:109
Alignment explanation
Indices: 10055165--10055379 Score: 385
Period size: 109 Copynumber: 2.0 Consensus size: 109
10055155 TCCACATGGG
*
10055165 TAATCCACACGCCAGTGCACGACACACGGGTAATCCACACGCCAGTGTGTCATGGCCGTGTCGAC
1 TAATCCACACGCCAGTGCACGACACACGGGTAATCCACACGCCAGTGTGTCATGGCCGTGTCGAA
10055230 ATTAAACCACATCAGAATTACACACGGCCTGAGCACCTTCACAC
66 ATTAAACCACATCAGAATTACACACGGCCTGAGCACCTTCACAC
* * * *
10055274 TAATCTACACGTCAGTGCGCGACACACGGGTAATCCACAGGCCAGTGTGTCATGGCCGTGTCGAA
1 TAATCCACACGCCAGTGCACGACACACGGGTAATCCACACGCCAGTGTGTCATGGCCGTGTCGAA
10055339 ATTAAACCACATCAGAATTACACACGGCCTGAGCACCTTCA
66 ATTAAACCACATCAGAATTACACACGGCCTGAGCACCTTCA
10055380 TACTGGCGTG
Statistics
Matches: 101, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
109 101 1.00
ACGTcount: A:0.29, C:0.32, G:0.20, T:0.19
Consensus pattern (109 bp):
TAATCCACACGCCAGTGCACGACACACGGGTAATCCACACGCCAGTGTGTCATGGCCGTGTCGAA
ATTAAACCACATCAGAATTACACACGGCCTGAGCACCTTCACAC
Found at i:10060407 original size:43 final size:43
Alignment explanation
Indices: 10060346--10060431 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
10060336 CAAAATAGTT
10060346 AGTAAAATAATCCTCCAAACCACAAACTTGTTTGGGAGATTGA
1 AGTAAAATAATCCTCCAAACCACAAACTTGTTTGGGAGATTGA
10060389 AGTAAAATAATCCTCCAAACCACAAACTTGTTTGGGAGATTGA
1 AGTAAAATAATCCTCCAAACCACAAACTTGTTTGGGAGATTGA
10060432 TACTATAGTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.26
Consensus pattern (43 bp):
AGTAAAATAATCCTCCAAACCACAAACTTGTTTGGGAGATTGA
Found at i:10062500 original size:16 final size:16
Alignment explanation
Indices: 10062475--10062522 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 16
10062465 TTTTTTCTTT
10062475 TTGGAAATTTAATTAG
1 TTGGAAATTTAATTAG
*
10062491 TTGGATA-TT--TT--
1 TTGGAAATTTAATTAG
10062502 TTGGAAATTTAATTAG
1 TTGGAAATTTAATTAG
10062518 TTGGA
1 TTGGA
10062523 TAGTGATTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 10
0.68 0.05 0.27
Matches are distributed among these distances:
11 6 0.24
12 2 0.08
13 2 0.08
14 2 0.08
15 2 0.08
16 11 0.44
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48
Consensus pattern (16 bp):
TTGGAAATTTAATTAG
Found at i:10062509 original size:27 final size:27
Alignment explanation
Indices: 10062472--10062524 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
10062462 TATTTTTTTC
10062472 TTTTTGGAAATTTAATTAGTTGGATAT
1 TTTTTGGAAATTTAATTAGTTGGATAT
10062499 TTTTTGGAAATTTAATTAGTTGGATA
1 TTTTTGGAAATTTAATTAGTTGGATA
10062525 GTGATTTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.30, C:0.00, G:0.19, T:0.51
Consensus pattern (27 bp):
TTTTTGGAAATTTAATTAGTTGGATAT
Found at i:10066806 original size:26 final size:26
Alignment explanation
Indices: 10066776--10066857 Score: 164
Period size: 26 Copynumber: 3.2 Consensus size: 26
10066766 TGAAATTCCC
10066776 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
10066802 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
10066828 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
10066854 ATCA
1 ATCA
10066858 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.35, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:10073100 original size:342 final size:341
Alignment explanation
Indices: 10072445--10073120 Score: 1235
Period size: 342 Copynumber: 2.0 Consensus size: 341
10072435 AAACCTTTGT
*
10072445 GTATGCTTTTAGAAAAAGGTATTGTTTTTTTTATTTTAACAAAACATGTTTAAAAGCTTTTAAGG
1 GTATGCTTTTAAAAAAAGGTATTGTTTTTTTTATTTTAACAAAACATGTTTAAAAGCTTTTAAGG
* *
10072510 AATGGAAAATCATTTAATCTCAGGCCCAATAATTGTTACACTTGATTGGAACTCTCATTTTGAAT
66 AATGGAAAAGCATTTAATCTCAGCCCCAATAATTGTTACACTTGATTGGAACTCTCATTTTGAAT
** *
10072575 TGATGTGTGACGCAAGTGACTTCGTTGTTGGAGCTATGATGGGTCAAAAAAGAAACAAAGTGTTT
131 TGATGTGTGACGCAAGTGACTTCACTGTTGGAGCTATGATGGGTCAAAAAAGAAACAAAGTGTTC
*
10072640 CACCCTATCTACTATGCAAGCAAAACTTTGACAGAAGCCCAACTCAATCACACAGTAATTGAAAA
196 CACCCTATCTACTATGCAAGCAAAACTTTGACAAAAGCCCAACTCAATCACACAGTAATTGAAAA
10072705 AGAACCCTTTGCTATAGTTTTTACTTTTGAAAAGTTCTGTTCATATCTTATAGTTACTAAAGTTA
261 AGAACCCTTTGCTATAGTTTTTACTTTTGAAAAGTTCTGTTCATATCTTATAGTTACTAAAGTTA
10072770 CAGTATTTAGAAAAAG
326 CAGTATTTAGAAAAAG
10072786 GTATGCTTTTAAAAAAAGGTATTGTTTTTTCTTATTTTAACAAAACATGTTTAAAAGCTTTTAAG
1 GTATGCTTTTAAAAAAAGGTATTGTTTTTT-TTATTTTAACAAAACATGTTTAAAAGCTTTTAAG
* * *
10072851 GAATGGAAAAGCGTTTAATCTCAGCCCCAATAATTGTTACATTTGATTGGAACTCTCCTTTTGAA
65 GAATGGAAAAGCATTTAATCTCAGCCCCAATAATTGTTACACTTGATTGGAACTCTCATTTTGAA
*
10072916 TTGATGTGTGACGCAAGTGACTTCACTGTTGGAGCTATGATGGGTCAAAAAAGAAACAATGTGTT
130 TTGATGTGTGACGCAAGTGACTTCACTGTTGGAGCTATGATGGGTCAAAAAAGAAACAAAGTGTT
*
10072981 CCACCCTATCTACTATGCAAGTAAAACTTTGACAAAAGCCCAACTCAATCACACAGTAATTGAAA
195 CCACCCTATCTACTATGCAAGCAAAACTTTGACAAAAGCCCAACTCAATCACACAGTAATTGAAA
10073046 AAGAACCCTTTGCTATAGTTTTTACTTTTGAAAAGTTCTGTTCATATCTTATAGTTACTAAAGTT
260 AAGAACCCTTTGCTATAGTTTTTACTTTTGAAAAGTTCTGTTCATATCTTATAGTTACTAAAGTT
10073111 ACAGTATTTA
325 ACAGTATTTA
10073121 TTGACCATGC
Statistics
Matches: 322, Mismatches: 12, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
341 29 0.09
342 293 0.91
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (341 bp):
GTATGCTTTTAAAAAAAGGTATTGTTTTTTTTATTTTAACAAAACATGTTTAAAAGCTTTTAAGG
AATGGAAAAGCATTTAATCTCAGCCCCAATAATTGTTACACTTGATTGGAACTCTCATTTTGAAT
TGATGTGTGACGCAAGTGACTTCACTGTTGGAGCTATGATGGGTCAAAAAAGAAACAAAGTGTTC
CACCCTATCTACTATGCAAGCAAAACTTTGACAAAAGCCCAACTCAATCACACAGTAATTGAAAA
AGAACCCTTTGCTATAGTTTTTACTTTTGAAAAGTTCTGTTCATATCTTATAGTTACTAAAGTTA
CAGTATTTAGAAAAAG
Found at i:10079911 original size:12 final size:12
Alignment explanation
Indices: 10079896--10079937 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
10079886 ACTTTAAAAA
*
10079896 AATATGATATTT
1 AATATAATATTT
10079908 AATAATAAT-TTT
1 AAT-ATAATATTT
*
10079920 AAAATAATATTT
1 AATATAATATTT
10079932 AATATA
1 AATATA
10079938 TAATATATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
11 5 0.20
12 16 0.64
13 4 0.16
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (12 bp):
AATATAATATTT
Found at i:10079940 original size:14 final size:13
Alignment explanation
Indices: 10079902--10079950 Score: 66
Period size: 14 Copynumber: 3.8 Consensus size: 13
10079892 AAAAAATATG
10079902 ATATTTAATAATA
1 ATATTTAATAATA
10079915 AT-TTTAA-AATA
1 ATATTTAATAATA
10079926 ATATTTAATATATA
1 ATATTTAATA-ATA
*
10079940 ATATATAATAA
1 ATATTTAATAA
10079951 CAAAAAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
11 6 0.19
12 10 0.31
13 4 0.12
14 12 0.38
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
ATATTTAATAATA
Found at i:10080285 original size:12 final size:12
Alignment explanation
Indices: 10080251--10080416 Score: 53
Period size: 12 Copynumber: 14.8 Consensus size: 12
10080241 ACTTTTGATA
10080251 ATAATAATATAG
1 ATAATAATATAG
* *
10080263 ATAAAAATATAT
1 ATAATAATATAG
*
10080275 ATAATAGTATA-
1 ATAATAATATAG
* *
10080286 A-AA-AA-AGAC
1 ATAATAATATAG
10080295 ATAATAATATA-
1 ATAATAATATAG
10080306 A-AATAAATATA-
1 ATAAT-AATATAG
10080317 ATATATAATAT-G
1 ATA-ATAATATAG
*
10080329 AAAATATATATA-
1 ATAATA-ATATAG
*
10080341 AAAATAATATA-
1 ATAATAATATAG
*
10080352 AT-AT-ATATAA
1 ATAATAATATAG
10080362 ATAAT-ATGAATA-
1 ATAATAAT--ATAG
*
10080374 ATAAATAATA-AA
1 AT-AATAATATAG
*
10080386 ATAATTATATA-
1 ATAATAATATAG
10080397 AT-ATAATATA-
1 ATAATAATATAG
*
10080407 AAAATAATAT
1 ATAATAATAT
10080417 TAAAAATAAA
Statistics
Matches: 123, Mismatches: 12, Indels: 39
0.71 0.07 0.22
Matches are distributed among these distances:
8 2 0.02
9 7 0.06
10 19 0.15
11 40 0.33
12 45 0.37
13 8 0.07
14 2 0.02
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.33
Consensus pattern (12 bp):
ATAATAATATAG
Found at i:10080288 original size:20 final size:18
Alignment explanation
Indices: 10080248--10080407 Score: 114
Period size: 18 Copynumber: 8.5 Consensus size: 18
10080238 AAAACTTTTG
10080248 ATAATAATAATATAGATAAAA
1 ATAAT-ATAATAT--ATAAAA
10080269 ATATATATAATAGTATAAAA
1 ATA-ATATAATA-TATAAAA
* *
10080289 AAAGACATAATA-ATATAAA
1 ATA-ATATAATATATA-AAA
*
10080308 ATAAATATAATATAT-AAT
1 AT-AATATAATATATAAAA
*
10080326 ATGAAAAT-ATATATAAAA
1 AT-AATATAATATATAAAA
*
10080344 ATAATATAATATATATAA
1 ATAATATAATATATAAAA
10080362 ATAATATGAATA-ATAAATA
1 ATAATAT-AATATATAAA-A
* *
10080381 ATAAAATAAT-TATATAAT
1 ATAATATAATATATA-AAA
10080399 ATAATATAA
1 ATAATATAA
10080408 AAATAATATT
Statistics
Matches: 113, Mismatches: 15, Indels: 25
0.74 0.10 0.16
Matches are distributed among these distances:
17 10 0.09
18 49 0.43
19 24 0.21
20 18 0.16
21 9 0.08
22 3 0.03
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.33
Consensus pattern (18 bp):
ATAATATAATATATAAAA
Found at i:10080324 original size:13 final size:13
Alignment explanation
Indices: 10080295--10080425 Score: 70
Period size: 11 Copynumber: 10.3 Consensus size: 13
10080285 AAAAAAAGAC
10080295 ATAATAATATAAA-
1 ATAAT-ATATAAAT
10080308 ATAA-ATATAATAT
1 ATAATATATAA-AT
10080321 ATAATATGA-AAAT
1 ATAATAT-ATAAAT
10080334 AT-ATATA-AAA-
1 ATAATATATAAAT
*
10080344 ATAATATAATATAT
1 ATAATAT-ATAAAT
*
10080358 ATAAATAATATGAAT
1 AT-AAT-ATATAAAT
10080373 AATAA-ATAATAAA-
1 -ATAATAT-ATAAAT
10080386 ATAAT-TATATAAT
1 ATAATATATA-AAT
10080399 ATAATATA-AAA-
1 ATAATATATAAAT
*
10080410 ATAATAT-TAAAA
1 ATAATATATAAAT
10080422 ATAA
1 ATAA
10080426 AACAGATAAA
Statistics
Matches: 96, Mismatches: 4, Indels: 37
0.70 0.03 0.27
Matches are distributed among these distances:
10 2 0.02
11 27 0.28
12 19 0.20
13 22 0.23
14 12 0.12
15 10 0.10
16 4 0.04
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.34
Consensus pattern (13 bp):
ATAATATATAAAT
Found at i:10080325 original size:73 final size:71
Alignment explanation
Indices: 10080248--10080406 Score: 182
Period size: 73 Copynumber: 2.2 Consensus size: 71
10080238 AAAACTTTTG
10080248 ATAATAATAATATAGATAAAAATATATATAATAGTATAAAAAAAGACAT-AATAATATAA-AATA
1 ATAATAATAATATAGATAAAAATA-ATATAATA-TATAAAAAAA-ACATGAATAATA-AATAATA
10080311 AATATAA-TAT
62 AA-ATAATTAT
* * * * *
10080321 ATAATATGAAAATATATATAAAAATAATATAATATATATAAATAATATGAATAATAAATAATAAA
1 ATAATA--ATAATATAGATAAAAATAATATAATATATAAAAAAAACATGAATAATAAATAATAAA
10080386 ATAATTAT
64 ATAATTAT
10080394 ATAAT-ATAATATA
1 ATAATAATAATATA
10080407 AAAATAATAT
Statistics
Matches: 75, Mismatches: 6, Indels: 13
0.80 0.06 0.14
Matches are distributed among these distances:
70 7 0.09
72 9 0.12
73 35 0.47
74 8 0.11
75 16 0.21
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.33
Consensus pattern (71 bp):
ATAATAATAATATAGATAAAAATAATATAATATATAAAAAAAACATGAATAATAAATAATAAAAT
AATTAT
Found at i:10080350 original size:35 final size:32
Alignment explanation
Indices: 10080263--10080421 Score: 90
Period size: 27 Copynumber: 5.2 Consensus size: 32
10080253 AATAATATAG
* * *
10080263 ATAAAA-ATATATATAATAGTATAAAAA-AAG
1 ATAAAATATATATAAAATAATATAAAAATAAT
* * *
10080293 ACATAATA-ATATAAAATAAATATAATATATAAT
1 ATAAAATATATATAAAAT-AATATAA-AAATAAT
*
10080326 ATGAAAATATATATAAAAATAATAT-AATAT-AT
1 AT-AAAATATATAT-AAAATAATATAAAAATAAT
* *
10080358 AT-AAATA-ATAT-GAATAATA-AATAATAA-
1 ATAAAATATATATAAAATAATATAAAAATAAT
* *
10080385 A-ATAAT-TATATAATATAATATAAAAATAAT
1 ATAAAATATATATAAAATAATATAAAAATAAT
10080415 ATTAAAA
1 A-TAAAA
10080422 ATAAAACAGA
Statistics
Matches: 97, Mismatches: 16, Indels: 30
0.68 0.11 0.21
Matches are distributed among these distances:
27 18 0.19
28 7 0.07
29 11 0.11
30 18 0.19
31 7 0.07
32 9 0.09
33 7 0.07
34 6 0.06
35 9 0.09
36 5 0.05
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.32
Consensus pattern (32 bp):
ATAAAATATATATAAAATAATATAAAAATAAT
Found at i:10080404 original size:24 final size:23
Alignment explanation
Indices: 10080248--10080416 Score: 117
Period size: 24 Copynumber: 7.3 Consensus size: 23
10080238 AAAACTTTTG
10080248 ATAATA-ATAATATAGAT-A-AAA
1 ATAATATATAATATA-ATAATAAA
*
10080269 AT-ATATATAATAGT-ATAAAAAA
1 ATAATATATAATA-TAATAATAAA
*
10080291 AGACATA-ATAATATAA-AATAAA
1 ATA-ATATATAATATAATAATAAA
*
10080313 TATAATATATAATATGAA-AATATAT
1 -ATAATATATAATAT-AATAATA-AA
*
10080338 ATAA-AAATAATATAATATATATAA
1 ATAATATATAATATAATA-ATA-AA
10080362 ATAATATGAATAATA-AATAATAAA
1 ATAATAT--ATAATATAATAATAAA
10080386 ATAATTATATAATATAAT-ATAAAA
1 ATAA-TATATAATATAATAAT-AAA
10080410 ATAATAT
1 ATAATAT
10080417 TAAAAATAAA
Statistics
Matches: 122, Mismatches: 7, Indels: 36
0.74 0.04 0.22
Matches are distributed among these distances:
20 5 0.04
21 9 0.07
22 16 0.13
23 36 0.30
24 38 0.31
25 8 0.07
26 4 0.03
27 6 0.05
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.33
Consensus pattern (23 bp):
ATAATATATAATATAATAATAAA
Found at i:10080411 original size:78 final size:74
Alignment explanation
Indices: 10080251--10080425 Score: 205
Period size: 78 Copynumber: 2.3 Consensus size: 74
10080241 ACTTTTGATA
* *
10080251 ATAATAATATAGATAAAAATATATATAATAGTATAAAAAAAGACATAATAATATAAAATAAATAT
1 ATAAAAATATATATAAAAATA-ATATAATAGTATAAAAAAAGACATAATAATATAAAATAAATAT
10080316 AATATATAAT
65 AATATATAAT
*
10080326 ATGAAAATATATATAAAAATAATATAATA-TATATAAATAATATGA-ATAATAAATAATAAAATA
1 ATAAAAATATATATAAAAATAATATAATAGTATA-AAA-AA-A-GACATAAT-AAT-ATAAAATA
*
10080389 ATTAT-ATAATATAAT
60 AATATAAT-ATATAAT
10080404 ATAAAAATA-ATATTAAAAATAA
1 ATAAAAATATATA-TAAAAATAA
10080426 AACAGATAAA
Statistics
Matches: 87, Mismatches: 5, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
73 4 0.05
74 11 0.13
75 20 0.23
76 6 0.07
77 10 0.11
78 36 0.41
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.32
Consensus pattern (74 bp):
ATAAAAATATATATAAAAATAATATAATAGTATAAAAAAAGACATAATAATATAAAATAAATATA
ATATATAAT
Found at i:10080435 original size:50 final size:50
Alignment explanation
Indices: 10080344--10080455 Score: 131
Period size: 50 Copynumber: 2.2 Consensus size: 50
10080334 ATATATAAAA
* *
10080344 ATAATATAATATATATAAATAATATGAATAATAAATAATAAAATAA-TTAT
1 ATAATATAATATATATAAATAATATGAAAAATAAACAATAAAA-AATTTAT
*
10080394 ATAATATAATATA-A-AAATAATATTAAAAATAAAACAGATAAAAAATTTAT
1 ATAATATAATATATATAAATAATATGAAAAAT-AAACA-ATAAAAAATTTAT
*
10080444 ATTTATATAATA
1 A-TAATATAATA
10080456 ACAACAGAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
48 14 0.26
49 7 0.13
50 24 0.44
51 9 0.17
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.35
Consensus pattern (50 bp):
ATAATATAATATATATAAATAATATGAAAAATAAACAATAAAAAATTTAT
Found at i:10082535 original size:205 final size:205
Alignment explanation
Indices: 10082081--10083039 Score: 1528
Period size: 205 Copynumber: 4.7 Consensus size: 205
10082071 GCTTCTTTGG
* * * * *
10082081 TTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTTCTTCATCGTAAGCACATAAAA
1 TTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAA
*
10082146 GCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATG-TCAAATCATCTTGGATC
66 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGAATGCT-AAATCATCTTGGATC
* *
10082210 TTGCTTCA--ATGAAATTATCTGAAGGTGAGATCTGCTATGTATTTGCTCCCCGTTGAAGTGGAG
130 -TGCTTCAGTAT-AAA-CATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAG
*
10082273 ATGCCAGACTTTGA
192 ATGCCAGACTTCGA
* * *
10082287 TTTGTTCTCTGACAATGCAGAGATGCCAAATCATCTTAGATTTGCTTCATCATAAACACGTGAAA
1 TTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAA
*
10082352 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCTAAATCATCTTGGATCT
66 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGAATGCTAAATCATCTTGGATCT
* *
10082417 GCTTCAGTATAAACATCTGAATGTGAGATCTACTATGTATCTGCTCCCCGTTGAAGTGGAGATGC
131 GCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAGATGC
*
10082482 CAGAATTCGA
196 CAGACTTCGA
* *
10082492 TTTGCTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCATAAACACGTGAAA
1 TTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAA
* *
10082557 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGTATGTTAAATCATCTTGGATCT
66 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGAATGCTAAATCATCTTGGATCT
*
10082622 GCTTCAGTATAAATATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAGATGC
131 GCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAGATGC
10082687 CAGACTTCGA
196 CAGACTTCGA
* * *
10082697 TTTGCTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACATGTGAAA
1 TTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAA
* *
10082762 GCCAAATCAGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGGATGCTAAATCATCTTGGATCT
66 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGAATGCTAAATCATCTTGGATCT
**
10082827 GCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTAAAGATGC
131 GCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAGATGC
10082892 CAGACTTCGA
196 CAGACTTCGA
* *
10082902 TTTGCTCTCTGACAATATAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAA
1 TTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAA
* * * ** *
10082967 GCCAAATCAGCTATGTCTTTGGTTTGTTCCTTGTAAGCACAAGAATGCCGAACCATCTTGGATCT
66 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGAATGCTAAATCATCTTGGATC-
10083032 TGCTTCAG
130 TGCTTCAG
10083040 CCAGATCTGC
Statistics
Matches: 706, Mismatches: 43, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
205 573 0.81
206 130 0.18
207 3 0.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.32
Consensus pattern (205 bp):
TTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAA
GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGAATGCTAAATCATCTTGGATCT
GCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAGATGC
CAGACTTCGA
Found at i:10096927 original size:15 final size:15
Alignment explanation
Indices: 10096907--10096960 Score: 63
Period size: 15 Copynumber: 3.6 Consensus size: 15
10096897 GTATCTTGGG
10096907 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* * *
10096922 TCTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
10096937 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
10096952 TTTCTTTAT
1 TTTCTTTAT
10096961 TCGGTTTTCT
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.11, C:0.19, G:0.13, T:0.57
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:10096937 original size:30 final size:30
Alignment explanation
Indices: 10096903--10096971 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 30
10096893 TATCGTATCT
10096903 TGGGTTTCTTTATCCTGGATCTCTTTATTC
1 TGGGTTTCTTTATCCTGGATCTCTTTATTC
* * *
10096933 TGGGTTTCTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTTATCCTGGATCTCTTTATTC
*
10096963 -GGTTTTCTT
1 TGGGTTTCTT
10096972 GTTATCTTTG
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 7 0.21
30 27 0.79
ACGTcount: A:0.09, C:0.17, G:0.17, T:0.57
Consensus pattern (30 bp):
TGGGTTTCTTTATCCTGGATCTCTTTATTC
Found at i:10099357 original size:46 final size:45
Alignment explanation
Indices: 10099304--10099478 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
10099294 TATTTGGGCA
10099304 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
10099350 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
10099397 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
10099443 CCCGAGCTCGTTGAGTTGAGT-CGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
10099479 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 16 0.15
46 53 0.48
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:10099459 original size:93 final size:92
Alignment explanation
Indices: 10099300--10099470 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 92
10099290 AGGATATTTG
* *
10099300 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
10099365 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGT-CGAGTTCGAGAGATGTAACTA
* *
10099393 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
10099458 TTGAGTCGAGTTC
66 TTGAGTCGAGTTC
10099471 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 7 0.09
93 67 0.91
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.27
Consensus pattern (92 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCGAGTTCGAGAGATGTAACTA
Found at i:10102467 original size:15 final size:15
Alignment explanation
Indices: 10102430--10102509 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
10102420 GTATCTTGGG
*
10102430 TTTCTTTATACTGGA
1 TTTCTTTATTCTGGA
*
10102445 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
10102460 TTTATTTATTCTGGG
1 TTTCTTTATTCTGGA
*
10102475 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
10102490 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
10102504 TTTCTT
1 TTTCTT
10102510 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.12, C:0.15, G:0.14, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:10102490 original size:30 final size:30
Alignment explanation
Indices: 10102421--10102508 Score: 90
Period size: 30 Copynumber: 3.0 Consensus size: 30
10102411 CATAGTATCG
* * * *
10102421 TATCTTGGGTTTCTTTATACTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
* *
10102451 TAT-TCTGGATTTATTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
10102481 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
10102509 TGTTATCTTT
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
29 8 0.17
30 39 0.81
31 1 0.02
ACGTcount: A:0.12, C:0.15, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:10104944 original size:46 final size:45
Alignment explanation
Indices: 10104891--10105062 Score: 204
Period size: 46 Copynumber: 3.7 Consensus size: 45
10104881 TGGGCATCCA
10104891 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCG
*** * *
10104937 AACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-TCCG
1 AACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAGTCCG
* *
10104984 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCG
*
10105030 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
10105063 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 65 0.61
47 32 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (45 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGTCCG
Found at i:10105042 original size:93 final size:93
Alignment explanation
Indices: 10104883--10105054 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
10104873 AGGATATTTG
* *
10104883 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
10104948 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
10104976 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
10105041 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
10105055 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:10108680 original size:92 final size:92
Alignment explanation
Indices: 10108516--10108690 Score: 262
Period size: 92 Copynumber: 1.9 Consensus size: 92
10108506 AATAACTGCC
* * * * *
10108516 AGTATAAGTTTTGGATAAACCATGAGTGCTTACAGGTTGATACATTATCATTAGTTGTGAATACA
1 AGTATAAGTTATGGATAAACCACGAGTGCTTACAGGTTAATACATTACCAGTAGTTGTGAATACA
*
10108581 AATTGGTTTTTGTAGATGTTAGCTACT
66 AATTGGTTTTTGCAGATGTTAGCTACT
**
10108608 AGTATAAGTTATGGATAAACCACGAGTGCTTACAGGTTAATATGTTACCAGTAGTTGTGAATACA
1 AGTATAAGTTATGGATAAACCACGAGTGCTTACAGGTTAATACATTACCAGTAGTTGTGAATACA
10108673 CAA-TGGTTTTTGCAGATG
66 -AATTGGTTTTTGCAGATG
10108691 AAAGTTGCCA
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
92 72 0.97
93 2 0.03
ACGTcount: A:0.31, C:0.11, G:0.22, T:0.36
Consensus pattern (92 bp):
AGTATAAGTTATGGATAAACCACGAGTGCTTACAGGTTAATACATTACCAGTAGTTGTGAATACA
AATTGGTTTTTGCAGATGTTAGCTACT
Found at i:10112296 original size:21 final size:20
Alignment explanation
Indices: 10112248--10112296 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
10112238 GGCTACTCAG
10112248 AAAATTTTTAATGAAATTTC
1 AAAATTTTTAATGAAATTTC
10112268 AAAATTTTTAATGAAATTTC
1 AAAATTTTTAATGAAATTTC
10112288 AAAATTTTT
1 AAAATTTTT
10112297 CCGACGTGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (20 bp):
AAAATTTTTAATGAAATTTC
Found at i:10112525 original size:13 final size:13
Alignment explanation
Indices: 10112507--10112532 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
10112497 AGGGGTCACG
10112507 CGGCCAAGCCACA
1 CGGCCAAGCCACA
10112520 CGGCCAAGCCACA
1 CGGCCAAGCCACA
10112533 TGCCCGTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.46, G:0.23, T:0.00
Consensus pattern (13 bp):
CGGCCAAGCCACA
Found at i:10113762 original size:23 final size:23
Alignment explanation
Indices: 10113718--10113765 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
10113708 GGATAACCAT
*
10113718 ATATCGGGAAGATCAAGCGAGCC
1 ATATCGGGAAGATCAAGAGAGCC
* **
10113741 ATATCGGGAAGCTCTGGAGAGCC
1 ATATCGGGAAGATCAAGAGAGCC
10113764 AT
1 AT
10113766 TAATCAGGAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.31, C:0.21, G:0.31, T:0.17
Consensus pattern (23 bp):
ATATCGGGAAGATCAAGAGAGCC
Found at i:10113788 original size:26 final size:26
Alignment explanation
Indices: 10113758--10113814 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
10113748 GAAGCTCTGG
*
10113758 AGAGCCATTAATC-AGGAAACTTACAA
1 AGAGCCATTAATCGA-GAAACTCACAA
* *
10113784 AGAGCCTTTAATCGAGAAGCTCACAA
1 AGAGCCATTAATCGAGAAACTCACAA
10113810 AGAGC
1 AGAGC
10113815 TATATACCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.42, C:0.21, G:0.19, T:0.18
Consensus pattern (26 bp):
AGAGCCATTAATCGAGAAACTCACAA
Found at i:10120062 original size:18 final size:18
Alignment explanation
Indices: 10120021--10120055 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
10120011 AATTGCTTTT
*
10120021 GCTTTTGGGTTCAAAAGA
1 GCTTTTGAGTTCAAAAGA
10120039 GCTTTTGAGTTCAAAAG
1 GCTTTTGAGTTCAAAAG
10120056 CACTTTTCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.11, G:0.26, T:0.34
Consensus pattern (18 bp):
GCTTTTGAGTTCAAAAGA
Found at i:10120069 original size:18 final size:18
Alignment explanation
Indices: 10120030--10120072 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
10120020 TGCTTTTGGG
* *
10120030 TTCAAAAGAGCTTTTGAG
1 TTCAAAAGAGCTTTTCAC
10120048 TTCAAAAGCA-CTTTTCAC
1 TTCAAAAG-AGCTTTTCAC
10120066 TTCAAAA
1 TTCAAAA
10120073 ATTATCCGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 21 0.95
19 1 0.05
ACGTcount: A:0.37, C:0.19, G:0.12, T:0.33
Consensus pattern (18 bp):
TTCAAAAGAGCTTTTCAC
Found at i:10121555 original size:16 final size:16
Alignment explanation
Indices: 10121534--10121582 Score: 80
Period size: 16 Copynumber: 3.1 Consensus size: 16
10121524 TATATGAAGA
*
10121534 ATTAGAGGTGTATTGG
1 ATTAGAGGTGTAATGG
10121550 ATTAGAGGTGTAATGG
1 ATTAGAGGTGTAATGG
*
10121566 AATAGAGGTGTAATGG
1 ATTAGAGGTGTAATGG
10121582 A
1 A
10121583 AAAGCTGTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.33, C:0.00, G:0.37, T:0.31
Consensus pattern (16 bp):
ATTAGAGGTGTAATGG
Found at i:10121849 original size:18 final size:17
Alignment explanation
Indices: 10121828--10121862 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
10121818 TTATTATTAA
*
10121828 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
10121846 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
10121863 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:10121999 original size:16 final size:16
Alignment explanation
Indices: 10121962--10122003 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
10121952 TTAATCATAT
*
10121962 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
10121978 TT-AAATATATTATAA
1 TTAAAATATATTATAA
10121993 TTAAAATATAT
1 TTAAAATATAT
10122004 AATTTAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:10122001 original size:154 final size:156
Alignment explanation
Indices: 10121715--10122012 Score: 546
Period size: 154 Copynumber: 1.9 Consensus size: 156
10121705 TAGAATACCC
10121715 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTA-TA
*
10121780 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
65 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
10121845 TATATAATTTAATAAAATTCTTAATAA
130 TATATAATTTAATAAAATTCTTAATAA
* *
10121872 TTAGCATAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTA-A-
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATAT
10121935 TATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAAT
66 TATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAAT
10122000 ATATAATTTAATA
131 ATATAATTTAATA
10122013 TGAATTTACT
Statistics
Matches: 138, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
154 77 0.56
155 1 0.01
157 60 0.43
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.47
Consensus pattern (156 bp):
TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATAT
TATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAAT
ATATAATTTAATAAAATTCTTAATAA
Found at i:10122010 original size:14 final size:15
Alignment explanation
Indices: 10121971--10122105 Score: 70
Period size: 15 Copynumber: 8.9 Consensus size: 15
10121961 TTTAAACATA
*
10121971 ATTATTATTAAATAT
1 ATTATAATTAAATAT
10121986 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
10122000 A-TATAATTTAATAT
1 ATTATAATTAAATAT
*
10122014 GAATTTACTCAAATCATAATAT
1 --A-TTA-T--AATTA-AATAT
* *
10122036 ATGATACTGTAAA-AT
1 ATTATAAT-TAAATAT
10122051 A-TA-AATTAACATA-
1 ATTATAATTAA-ATAT
*
10122064 ATTATTATTAAATAT
1 ATTATAATTAAATAT
10122079 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
10122093 A-TATAATTTAATA
1 ATTATAATTAAATA
10122106 AAATTCTTAA
Statistics
Matches: 92, Mismatches: 12, Indels: 33
0.67 0.09 0.24
Matches are distributed among these distances:
12 3 0.03
13 22 0.24
14 16 0.17
15 30 0.33
16 5 0.05
17 1 0.01
18 3 0.03
19 3 0.03
20 1 0.01
21 3 0.03
22 5 0.05
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:10122069 original size:154 final size:155
Alignment explanation
Indices: 10121754--10122069 Score: 401
Period size: 154 Copynumber: 2.0 Consensus size: 155
10121744 ATTGTTATTG
10121754 TTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATAATTTAATCATATTTAAACATAAT
1 TTATTTAAATTTTAATAAGATTA-TATTATCAATAATAAATAATTTAATCATATTTAAACATAAT
* *
10121819 TATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCATAAATT
65 TATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA-TAGCATAAATA
** * * *** **
10121884 TGTTTTGGTAAATTATTATTGTTATTG
129 TGTACTGGTAAAATATAATTAACATAA
10121911 TTATTTAAATTTTAATAAGATTA-A-TATCAATAATAAATAATTTAATCATATTTAAACATAATT
1 TTATTTAAATTTTAATAAGATTATATTATCAATAATAAATAATTTAATCATATTTAAACATAATT
* * *
10121974 ATTATTAAATATATTATAATTAAAATATATAATTTAATATGAA-T-TTACTCAA-ATCATAATAT
66 ATTATTAAATATATTATAATTAAAATATATAATTTAATA-AAATTCTTAAT-AATAGCATAA-AT
10122036 ATGATACT-GTAAAATATAAATTAACATAA
128 ATG-TACTGGTAAAATAT-AATTAACATAA
10122065 TTATT
1 TTATT
10122070 ATTAAATATA
Statistics
Matches: 140, Mismatches: 14, Indels: 13
0.84 0.08 0.08
Matches are distributed among these distances:
152 6 0.04
153 16 0.11
154 92 0.66
155 3 0.02
157 23 0.16
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (155 bp):
TTATTTAAATTTTAATAAGATTATATTATCAATAATAAATAATTTAATCATATTTAAACATAATT
ATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATAGCATAAATATG
TACTGGTAAAATATAATTAACATAA
Found at i:10122120 original size:44 final size:43
Alignment explanation
Indices: 10122031--10122121 Score: 103
Period size: 44 Copynumber: 2.1 Consensus size: 43
10122021 CTCAAATCAT
* * *
10122031 AATATATGATACTGTAAAATATAAATTAACATAATTATTATTA
1 AATATATGATAATGTAAAATATAAATTAACAAAATTATTAATA
* * *
10122074 AATATATTATAAT-TAAAATATATAATTTAATAAAATTCTTAATA
1 AATATATGATAATGTAAAATATA-AA-TTAACAAAATTATTAATA
10122118 AATA
1 AATA
10122122 AAATTCTTCT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
42 9 0.22
43 13 0.32
44 18 0.45
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (43 bp):
AATATATGATAATGTAAAATATAAATTAACAAAATTATTAATA
Found at i:10122146 original size:120 final size:119
Alignment explanation
Indices: 10122011--10122229 Score: 336
Period size: 120 Copynumber: 1.8 Consensus size: 119
10122001 TATAATTTAA
* * *
10122011 TATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAA-TT-AACATAATTATTATTA
1 TATGAATTTACTCAAATCATAATATATGATACTATAAAAGA-AAATTTCAA-ATAATTAATATTA
*
10122074 AATAT-ATTATAATTAAAATATATAATTTAATAAAATTCTTAATAAATAAAATTCTTC
64 AATATGATT-TAATT-AAATATATAATTCAATAAAATTCTTAATAAATAAAATTCTTC
10122131 TATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATTTCAAATAATTAATATTAAA
1 TATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATTTCAAATAATTAATATTAAA
*
10122196 TATGATTTAATTAAATATATGATTCAATAAAATT
66 TATGATTTAATTAAATATATAATTCAATAAAATT
10122230 TAAAATTATT
Statistics
Matches: 91, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
119 23 0.25
120 63 0.69
121 5 0.05
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.40
Consensus pattern (119 bp):
TATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATTTCAAATAATTAATATTAAA
TATGATTTAATTAAATATATAATTCAATAAAATTCTTAATAAATAAAATTCTTC
Found at i:10122228 original size:17 final size:17
Alignment explanation
Indices: 10122195--10122228 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
10122185 TTAATATTAA
* *
10122195 ATATGATTTAATTAAAT
1 ATATGATTCAATAAAAT
10122212 ATATGATTCAATAAAAT
1 ATATGATTCAATAAAAT
10122229 TTAAAATTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.50, C:0.03, G:0.06, T:0.41
Consensus pattern (17 bp):
ATATGATTCAATAAAAT
Found at i:10122371 original size:93 final size:92
Alignment explanation
Indices: 10122261--10122455 Score: 286
Period size: 93 Copynumber: 2.1 Consensus size: 92
10122251 GATTATAGTT
* * *
10122261 TATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATT-TAATAATAATATATAATTTC
1 TATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTAT-ATAATAATATATAATTTC
* *
10122324 ATAAAATTCTTGATAATAAAAATTTTCTTA
64 ATAAAATTCTTAATAAT-AAAATGTTCTTA
* *
10122354 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAGTGATATATAATTTCAT
1 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
10122419 AAAATTCTTAATAATAAAATGTTCTTA
66 AAAATTCTTAATAATAAAATGTTCTTA
10122446 TATGAATTTA
1 TATGAATTTA
10122456 CTAAAATCAA
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
92 21 0.23
93 68 0.73
94 4 0.04
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (92 bp):
TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
AAAATTCTTAATAATAAAATGTTCTTA
Found at i:10123864 original size:11 final size:11
Alignment explanation
Indices: 10123850--10123876 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
10123840 AAAAATCAAT
10123850 ACAAAAGTTTC
1 ACAAAAGTTTC
10123861 ACAAAAGTTTC
1 ACAAAAGTTTC
10123872 ACAAA
1 ACAAA
10123877 CTAATTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.19, G:0.07, T:0.22
Consensus pattern (11 bp):
ACAAAAGTTTC
Found at i:10126139 original size:15 final size:15
Alignment explanation
Indices: 10126119--10126149 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
10126109 ATATTATGTA
10126119 TAATTGAGGTAAAAT
1 TAATTGAGGTAAAAT
10126134 TAATTGAGGTAAAAT
1 TAATTGAGGTAAAAT
10126149 T
1 T
10126150 TGAAGGTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.19, T:0.35
Consensus pattern (15 bp):
TAATTGAGGTAAAAT
Found at i:10129280 original size:21 final size:21
Alignment explanation
Indices: 10129250--10129302 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
10129240 GTATTATATT
*
10129250 TTATAGAAAAAATCAT-CCACC
1 TTATATAAAAAA-CATACCACC
*
10129271 TTATATAAAAAACTTACCACC
1 TTATATAAAAAACATACCACC
10129292 TTAT-TAAAAAA
1 TTATATAAAAAA
10129303 ACCCTTAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 9 0.31
21 20 0.69
ACGTcount: A:0.51, C:0.19, G:0.02, T:0.28
Consensus pattern (21 bp):
TTATATAAAAAACATACCACC
Found at i:10134638 original size:17 final size:17
Alignment explanation
Indices: 10134618--10134652 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
10134608 TTTCACCACC
*
10134618 AGTTTTGTTCCACTATG
1 AGTTTCGTTCCACTATG
*
10134635 AGTTTCGTTTCACTATG
1 AGTTTCGTTCCACTATG
10134652 A
1 A
10134653 ACGTATAATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.20, C:0.17, G:0.17, T:0.46
Consensus pattern (17 bp):
AGTTTCGTTCCACTATG
Found at i:10134880 original size:31 final size:31
Alignment explanation
Indices: 10134845--10134904 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
10134835 ATCCTTTAAC
*
10134845 TATTTGAGAGGTTTCATTTAAGTTATTGAAT
1 TATTTGAAAGGTTTCATTTAAGTTATTGAAT
* *
10134876 TATTTGAAAGTTTTTATTTAAGTTATTGA
1 TATTTGAAAGGTTTCATTTAAGTTATTGA
10134905 GCTGTTAAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.30, C:0.02, G:0.17, T:0.52
Consensus pattern (31 bp):
TATTTGAAAGGTTTCATTTAAGTTATTGAAT
Found at i:10149340 original size:15 final size:15
Alignment explanation
Indices: 10149317--10149347 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
10149307 ATTCTTCACT
10149317 TACTCACTTACTTAA
1 TACTCACTTACTTAA
*
10149332 TACTTACTTACTTAA
1 TACTCACTTACTTAA
10149347 T
1 T
10149348 CAAATTTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.23, G:0.00, T:0.45
Consensus pattern (15 bp):
TACTCACTTACTTAA
Found at i:10149462 original size:23 final size:24
Alignment explanation
Indices: 10149422--10149468 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
10149412 ACCTTTGCTC
*
10149422 TTTAGCATGAACTTGTCTTACCTT
1 TTTAGCATGAACTCGTCTTACCTT
*
10149446 TTTAGTAT-AACTCGTCTTACCTT
1 TTTAGCATGAACTCGTCTTACCTT
10149469 ACTTACCTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.21, C:0.21, G:0.11, T:0.47
Consensus pattern (24 bp):
TTTAGCATGAACTCGTCTTACCTT
Found at i:10149726 original size:55 final size:53
Alignment explanation
Indices: 10149583--10149790 Score: 240
Period size: 55 Copynumber: 3.8 Consensus size: 53
10149573 ATCCTTTTGA
* *
10149583 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAG
* * *
10149636 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG
* * * * *
10149690 TAACTTATCAATGCCATGTCTTGACATGGTCATACATGATTTCCTTGCCTTATA-
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAG
*
10149744 AACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 AA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTA-CCTT
10149791 AAACCCTAAT
Statistics
Matches: 129, Mismatches: 19, Indels: 12
0.81 0.12 0.08
Matches are distributed among these distances:
52 2 0.02
53 46 0.36
54 9 0.07
55 70 0.54
56 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAG
Found at i:10149727 original size:108 final size:110
Alignment explanation
Indices: 10149583--10149783 Score: 325
Period size: 108 Copynumber: 1.8 Consensus size: 110
10149573 ATCCTTTTGA
* * * *
10149583 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA-CTCACCAA-
1 AACTTACCAATGCCATGTCTTGACATGGTCATACATGATATCCTTGCCTTATAAACCTCACCAAT
10149646 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
66 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
10149691 AACTTATCAATGCCATGTCTTGACATGGTCATACATGATTTCCTTGCCTTATAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCATACATGATATCCTTGCCTTATAAACCTCACCAAT
10149756 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
10149784 TATCCTTAAA
Statistics
Matches: 84, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
108 49 0.58
109 7 0.08
110 28 0.33
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCATACATGATATCCTTGCCTTATAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:10157174 original size:49 final size:49
Alignment explanation
Indices: 10157098--10157191 Score: 152
Period size: 49 Copynumber: 1.9 Consensus size: 49
10157088 ATACGCGGGT
* *
10157098 AACTTACCGTTGCCATGACTTGTCATGGTCTTACGTGGTATCCTTTTGA
1 AACTTACCGTTGCCATGACTTGACATGGTCTTACATGGTATCCTTTTGA
* *
10157147 AACTTACCTTTGCCATGTCTTGACATGGTCTTACATGGTATCCTT
1 AACTTACCGTTGCCATGACTTGACATGGTCTTACATGGTATCCTT
10157192 GCCTTATGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 41 1.00
ACGTcount: A:0.19, C:0.23, G:0.18, T:0.39
Consensus pattern (49 bp):
AACTTACCGTTGCCATGACTTGACATGGTCTTACATGGTATCCTTTTGA
Found at i:10157290 original size:55 final size:53
Alignment explanation
Indices: 10157157--10157354 Score: 186
Period size: 55 Copynumber: 3.7 Consensus size: 53
10157147 AACTTACCTT
*
10157157 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACTAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACTAA
* * *
10157210 TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTA-TCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTCACT-AA
* * *** * *
10157265 TGTCGTGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTTACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA-CTCACTAA
* * *
10157319 TTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -TGCCATGTCTTGACATGGTCTTACATGGGATCCTT
10157355 AAACCCTAAT
Statistics
Matches: 118, Mismatches: 19, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
52 2 0.02
53 39 0.33
54 8 0.07
55 67 0.57
56 2 0.02
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.36
Consensus pattern (53 bp):
TGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACTAA
Found at i:10158586 original size:16 final size:17
Alignment explanation
Indices: 10158565--10158605 Score: 50
Period size: 16 Copynumber: 2.4 Consensus size: 17
10158555 GAGTTACAAA
10158565 TTTATTT-ATCATA-CAT
1 TTTATTTCATC-TAGCAT
10158581 TTTATTTCATCTAGCAT
1 TTTATTTCATCTAGCAT
10158598 TTATATTT
1 TT-TATTT
10158606 GGGACCTATC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 9 0.41
17 8 0.36
18 5 0.23
ACGTcount: A:0.27, C:0.12, G:0.02, T:0.59
Consensus pattern (17 bp):
TTTATTTCATCTAGCAT
Found at i:10160185 original size:2 final size:2
Alignment explanation
Indices: 10160178--10160218 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
10160168 ATGGTGTATA
10160178 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
10160219 TTTCCACACA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:10165866 original size:20 final size:22
Alignment explanation
Indices: 10165827--10165872 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
10165817 CTCTGCTCAA
*
10165827 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
10165848 ACTCCACCTG-TGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
10165869 ACTC
1 ACTC
10165873 ACTCCTTCTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.22, C:0.37, G:0.20, T:0.22
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:10171309 original size:3 final size:3
Alignment explanation
Indices: 10171301--10171353 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
10171291 TTTACAGAAT
10171301 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
10171349 TAA TA
1 TAA TA
10171354 CCAACATTTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:10180114 original size:18 final size:18
Alignment explanation
Indices: 10180093--10180129 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
10180083 GTAGTATTTA
10180093 ATTTTCTTTTAATATTGG
1 ATTTTCTTTTAATATTGG
10180111 ATTTTCTTTTAATATTGG
1 ATTTTCTTTTAATATTGG
10180129 A
1 A
10180130 ATATTTATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.24, C:0.05, G:0.11, T:0.59
Consensus pattern (18 bp):
ATTTTCTTTTAATATTGG
Found at i:10185370 original size:103 final size:101
Alignment explanation
Indices: 10185145--10185380 Score: 230
Period size: 101 Copynumber: 2.3 Consensus size: 101
10185135 TAATGCCTCC
** * * * *
10185145 ACATGAAGAGGCGACACAAAAAAATTCAAAAAAAATTACTGGTGTCGTCATATTTGGAGTTGGCA
1 ACATGAAGAGGCGACACTGAAAAATTTAAAAAAAATTACTGGTGTCGTCACATCTAGAGTTGGCA
**
10185210 CAAGAGAAATTTTTTTTAATAGATTTTGGTGCCTTT
66 CAAGAGAAATTTTTTTTAATAGATTTTGGTAACTTT
** * * *
10185246 ACATGAAGAGATGATATTGAAAAATTTAAAAAAAA-TACTTGTGTCG-CTACATCTAGAGTTGGC
1 ACATGAAGAGGCGACACTGAAAAATTTAAAAAAAATTACTGGTGTCGTC-ACATCTAGAGTTGGC
* *
10185309 ACCAAGGGAAACTTTTTATTTTACT-GATTTTGGTAACTCTT
65 A-CAAGAGAAA--TTTT-TTTTAATAGATTTTGGTAACT-TT
* *
10185350 -GATGAAGAGGCGACACTGAAAAA-GTAAAAAA
1 ACATGAAGAGGCGACACTGAAAAATTTAAAAAA
10185381 GAAAAAATTA
Statistics
Matches: 108, Mismatches: 21, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
99 1 0.01
100 23 0.21
101 36 0.33
102 7 0.06
103 33 0.31
104 8 0.07
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.30
Consensus pattern (101 bp):
ACATGAAGAGGCGACACTGAAAAATTTAAAAAAAATTACTGGTGTCGTCACATCTAGAGTTGGCA
CAAGAGAAATTTTTTTTAATAGATTTTGGTAACTTT
Found at i:10186404 original size:19 final size:19
Alignment explanation
Indices: 10186368--10186406 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
10186358 AATTTAATTC
* * *
10186368 ATTAAATATAATTGAATAA
1 ATTAAAAATAAATAAATAA
10186387 ATTAAAAATAAATAAATAA
1 ATTAAAAATAAATAAATAA
10186406 A
1 A
10186407 ACTTTTAGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (19 bp):
ATTAAAAATAAATAAATAA
Found at i:10186890 original size:14 final size:16
Alignment explanation
Indices: 10186856--10186892 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
10186846 AAACAATTAT
10186856 TATTTTAAATATAATA
1 TATTTTAAATATAATA
*
10186872 TATTTTTAAT-TAA-A
1 TATTTTAAATATAATA
10186886 TATTTTA
1 TATTTTA
10186893 TTAATGATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
14 7 0.37
15 3 0.16
16 9 0.47
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TATTTTAAATATAATA
Found at i:10187296 original size:5 final size:5
Alignment explanation
Indices: 10187279--10187316 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
10187269 CATGTATCGC
*
10187279 AAAGA AAAAA AAAGA AAAGA AAAG- AAAGA AAAGTA AAA
1 AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAAG-A AAA
10187317 CAAATAGGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
4 4 0.14
5 21 0.72
6 4 0.14
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.03
Consensus pattern (5 bp):
AAAGA
Found at i:10187306 original size:14 final size:15
Alignment explanation
Indices: 10187279--10187316 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
10187269 CATGTATCGC
10187279 AAAGAAAAAAAAAGA
1 AAAGAAAAAAAAAGA
*
10187294 AAAG-AAAAGAAAGA
1 AAAGAAAAAAAAAGA
10187308 AAAGTAAAA
1 AAAG-AAAA
10187317 CAAATAGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 13 0.65
15 4 0.20
16 3 0.15
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.03
Consensus pattern (15 bp):
AAAGAAAAAAAAAGA
Found at i:10195857 original size:9 final size:9
Alignment explanation
Indices: 10195843--10195961 Score: 59
Period size: 9 Copynumber: 13.0 Consensus size: 9
10195833 TTAAATTTCT
10195843 TATTATTAC
1 TATTATTAC
10195852 TATTATT--
1 TATTATTAC
*
10195859 T-TTATTCC
1 TATTATTAC
* *
10195867 TTTTACTACC
1 TATTATTA-C
* *
10195877 TATTATCAA
1 TATTATTAC
10195886 TATATTATTAC
1 TA--TTATTAC
*
10195897 TA-TAGCTAC
1 TATTA-TTAC
10195906 TATTATTA-
1 TATTATTAC
10195914 TATTATTATC
1 TATTATTA-C
* *
10195924 ATCATCATTAT
1 -T-ATTATTAC
*
10195935 TATTATTAT
1 TATTATTAC
10195944 TATTATTAC
1 TATTATTAC
10195953 TATTATTAC
1 TATTATTAC
10195962 ACTTATATGT
Statistics
Matches: 84, Mismatches: 14, Indels: 24
0.69 0.11 0.20
Matches are distributed among these distances:
6 5 0.06
7 1 0.01
8 11 0.13
9 44 0.52
10 9 0.11
11 8 0.10
12 6 0.07
ACGTcount: A:0.32, C:0.13, G:0.01, T:0.55
Consensus pattern (9 bp):
TATTATTAC
Found at i:10195912 original size:3 final size:3
Alignment explanation
Indices: 10195906--10195960 Score: 67
Period size: 3 Copynumber: 18.7 Consensus size: 3
10195896 CTATAGCTAC
* * * *
10195906 TAT TAT TA- TAT TAT TAT CAT CAT CAT TAT TAT TAT TAT TAT TAT TAC
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
10195953 TAT TAT TA
1 TAT TAT TA
10195961 CACTTATATG
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
2 2 0.04
3 45 0.96
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:10195967 original size:9 final size:9
Alignment explanation
Indices: 10195888--10195961 Score: 62
Period size: 9 Copynumber: 8.0 Consensus size: 9
10195878 ATTATCAATA
10195888 TATTATTAC
1 TATTATTAC
*
10195897 TA-TAGCTAC
1 TATTA-TTAC
10195906 TATTATTA-
1 TATTATTAC
10195914 TATTATTATC
1 TATTATTA-C
* *
10195924 ATCATCATTAT
1 -T-ATTATTAC
*
10195935 TATTATTAT
1 TATTATTAC
10195944 TATTATTAC
1 TATTATTAC
10195953 TATTATTAC
1 TATTATTAC
10195962 ACTTATATGT
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
8 10 0.19
9 33 0.62
10 3 0.06
11 1 0.02
12 6 0.11
ACGTcount: A:0.34, C:0.11, G:0.01, T:0.54
Consensus pattern (9 bp):
TATTATTAC
Found at i:10196060 original size:21 final size:23
Alignment explanation
Indices: 10196022--10196104 Score: 75
Period size: 22 Copynumber: 3.7 Consensus size: 23
10196012 ATTATCATCA
*
10196022 TTTTAATATTATTATGTATTTAT
1 TTTTAATATTATTATGTATATAT
10196045 TTTTAATA-TA-TATGTATATAT
1 TTTTAATATTATTATGTATATAT
* * *
10196066 TTATGTAGTATTATTA-ATAGT-TGT
1 TT-T-TAATATTATTATGTA-TATAT
10196090 TTTTAATATTATTAT
1 TTTTAATATTATTAT
10196105 TTGTAATATG
Statistics
Matches: 49, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
21 12 0.24
22 13 0.27
23 13 0.27
24 8 0.16
25 3 0.06
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (23 bp):
TTTTAATATTATTATGTATATAT
Found at i:10196108 original size:19 final size:20
Alignment explanation
Indices: 10196031--10196106 Score: 57
Period size: 21 Copynumber: 3.6 Consensus size: 20
10196021 ATTTTAATAT
10196031 TATTATGTATTTATTTTTAA
1 TATTATGTATTTATTTTTAA
* *
10196051 TATATATGTATATATTTATGTAG
1 TAT-TATGTATTTATTT-T-TAA
*
10196074 TATTAT-TAATAGTTGTTTTTAA
1 TATTATGT-AT--TTATTTTTAA
10196096 TATTAT-TATTT
1 TATTATGTATTT
10196107 GTAATATGTA
Statistics
Matches: 45, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
19 2 0.04
20 3 0.07
21 15 0.33
22 15 0.33
23 6 0.13
24 4 0.09
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.61
Consensus pattern (20 bp):
TATTATGTATTTATTTTTAA
Found at i:10202768 original size:20 final size:20
Alignment explanation
Indices: 10202743--10202785 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
10202733 TAATGTTGAC
10202743 TAAAAC-TGGATTAAGCTAAT
1 TAAAACATGG-TTAAGCTAAT
*
10202763 TAAAACATGGTTAAGTTAAT
1 TAAAACATGGTTAAGCTAAT
10202783 TAA
1 TAA
10202786 TTTAGGTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 18 0.86
21 3 0.14
ACGTcount: A:0.47, C:0.07, G:0.14, T:0.33
Consensus pattern (20 bp):
TAAAACATGGTTAAGCTAAT
Found at i:10202993 original size:15 final size:15
Alignment explanation
Indices: 10202973--10203002 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
10202963 TTGAGGTCAT
10202973 AGGAGCTTGATTTAG
1 AGGAGCTTGATTTAG
10202988 AGGAGCTTGATTTAG
1 AGGAGCTTGATTTAG
10203003 CTAGCCTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.07, G:0.33, T:0.33
Consensus pattern (15 bp):
AGGAGCTTGATTTAG
Found at i:10204184 original size:13 final size:13
Alignment explanation
Indices: 10204166--10204193 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
10204156 TTTTGAATGG
10204166 TTGATTGATTAGT
1 TTGATTGATTAGT
10204179 TTGATTGATTAGT
1 TTGATTGATTAGT
10204192 TT
1 TT
10204194 ATACATGAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.21, T:0.57
Consensus pattern (13 bp):
TTGATTGATTAGT
Done.