Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 39 of 250
Found at i:11763160 original size:34 final size:35
Alignment explanation
Indices: 11763096--11763166 Score: 108
Period size: 34 Copynumber: 2.1 Consensus size: 35
11763086 CATCTCTGGA
*
11763096 GCTTGGCAAATATGGAAAGTAATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
* *
11763131 GCTTGGCAAATATGG-AGGGGATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
11763165 GC
1 GC
11763167 GATCCTAGAC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
34 18 0.55
35 15 0.45
ACGTcount: A:0.35, C:0.13, G:0.25, T:0.27
Consensus pattern (35 bp):
GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
Found at i:11768305 original size:35 final size:35
Alignment explanation
Indices: 11768261--11768329 Score: 93
Period size: 35 Copynumber: 2.0 Consensus size: 35
11768251 TCTCTGGAGC
* * *
11768261 TTGGTAAATATGGAAAGTAATCTTCAAATATATGG
1 TTGGCAAATATGGAAAGGAATCTTCAAAGATATGG
* *
11768296 TTGGCAAATATGGAAGGGGATCTTCAAAGATATG
1 TTGGCAAATATGGAAAGGAATCTTCAAAGATATG
11768330 CGATCCTAGA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (35 bp):
TTGGCAAATATGGAAAGGAATCTTCAAAGATATGG
Found at i:11778468 original size:42 final size:42
Alignment explanation
Indices: 11778409--11778494 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
11778399 CTGCTTGTCA
11778409 TCCAGTTATCATCCATATCTTTAAGCTTCTCAATAAAGTTCT
1 TCCAGTTATCATCCATATCTTTAAGCTTCTCAATAAAGTTCT
11778451 TCCAGTTATCATCCATATCTTTAAGCTTCTCAATAAAGTTCT
1 TCCAGTTATCATCCATATCTTTAAGCTTCTCAATAAAGTTCT
11778493 TC
1 TC
11778495 TTTAGCCGTC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.28, C:0.24, G:0.07, T:0.41
Consensus pattern (42 bp):
TCCAGTTATCATCCATATCTTTAAGCTTCTCAATAAAGTTCT
Found at i:11780517 original size:13 final size:13
Alignment explanation
Indices: 11780481--11780505 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11780471 TACACTTTTT
11780481 TGCTACCAGGCGC
1 TGCTACCAGGCGC
11780494 TGCTACCAGGCG
1 TGCTACCAGGCG
11780506 ACGCTACTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.36, G:0.32, T:0.16
Consensus pattern (13 bp):
TGCTACCAGGCGC
Found at i:11780707 original size:43 final size:42
Alignment explanation
Indices: 11780623--11781169 Score: 342
Period size: 43 Copynumber: 12.9 Consensus size: 42
11780613 TACGGTGTCT
* *
11780623 GAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTC
1 GAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTC
* *
11780665 GAGGCTCCCGTACATCCGAGCCACCAAGGTGCCGATGGTGCTC
1 GAGGCTCCCGCACATCCAAG-CACCAAGGTGCCGATGGTGCTC
* ** * *
11780708 GAGGCTCCCGTACGA-CCAAGGGCCAAGGTTGCTGATGGTGCCC
1 GAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCTC
* *
11780751 GAGGCTCCCGCACATCCAAGCACCAAGGTACTGATGGTG-TCC
1 GAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCT-C
* ** * * *
11780793 GAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGATGCCC
1 GAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCTC
* * * * *
11780836 AAGGCTCTCGCACGA-CCAATG-GCCTAGGTTGTCGATGGTGCTC
1 GAGGCTCCCGCAC-ATCCAA-GCACCAAGG-TGCCGATGGTGCTC
* * * * *
11780879 GAGGCTCTCGCACGA-CCAATG-GCCTAGGTTACCGATGGCGC-C
1 GAGGCTCCCGCAC-ATCCAA-GCACCAAGG-TGCCGATGGTGCTC
* * *** * *
11780921 GAGGCTCTCACACATCCAAGCACCAAGGTGTTTATGGTCCCC
1 GAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTC
* * * *
11780963 GACGCTCCCGCACATCCAAGCACCAAAGTGCTGATGGTGCCC
1 GAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTC
* * * * ** * *
11781005 GAGGCTCCCGCACAACCAATG-GCCTAGTTTGTTGGTAGTG-TCC
1 GAGGCTCCCGCACATCCAA-GCACCAAG-GTGCCGATGGTGCT-C
* *
11781048 GAGGCTCCCGCACAT-CAGAGGCACCAAGGTGCCGATGTTGCGC
1 GAGGCTCCCGCACATCCA-A-GCACCAAGGTGCCGATGGTGCTC
** * * *** *
11781091 GAGGCTCCTACACATCCGAGGCACCAAGTTGTTAATGCTGCTC
1 GAGGCTCCCGCACATCC-AAGCACCAAGGTGCCGATGGTGCTC
*
11781134 GAGGCTCCCGCACATCCGAGCACCAAGGTGCCGATG
1 GAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATG
11781170 TTCCTTGAAG
Statistics
Matches: 401, Mismatches: 84, Indels: 40
0.76 0.16 0.08
Matches are distributed among these distances:
41 8 0.02
42 151 0.38
43 234 0.58
44 7 0.02
45 1 0.00
ACGTcount: A:0.21, C:0.33, G:0.28, T:0.18
Consensus pattern (42 bp):
GAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTC
Found at i:11780734 original size:85 final size:84
Alignment explanation
Indices: 11780579--11781023 Score: 269
Period size: 85 Copynumber: 5.2 Consensus size: 84
11780569 GGCACCAGGG
* * * * * *
11780579 CGAGGCACCCGCACATCCAA-CTTCCTAGGTTACCTACGGTGTCTGAGGCTCCCGCAC-ATCCAA
1 CGAGGCTCCCGCACATCCAAGC-ACCAAGG-TACCGATGGTGTCCGAGGCTCCCGCACGA-CCAA
** *
11780642 GCACCAAGGTGCCAATGCTGCT
63 GGGCCAAGGTGCCAATGCTGCC
* * * *
11780664 CGAGGCTCCCGTACATCCGAGCCACCAAGGTGCCGATGGTG-CTCGAGGCTCCCGTACGACCAAG
1 CGAGGCTCCCGCACATCCAAG-CACCAAGGTACCGATGGTGTC-CGAGGCTCCCGCACGACCAAG
** *
11780728 GGCCAAGGTTGCTGATGGTGCC
64 GGCCAAGG-TGCCAATGCTGCC
* *
11780750 CGAGGCTCCCGCACATCCAAGCACCAAGGTACTGATGGTGTCCGAGGCTCTCGCACGACCAAGGG
1 CGAGGCTCCCGCACATCCAAGCACCAAGGTACCGATGGTGTCCGAGGCTCCCGCACGACCAAGGG
* * *
11780815 CCTAGGTTGCCGATGATGCC
66 CCAAGG-TGCCAATGCTGCC
* * * * ** *
11780835 CAAGGCTCTCGCACGA-CCAATG-GCCTAGGTTGTCGATGGTG-CTCGAGGCTCTCGCACGACCA
1 CGAGGCTCCCGCAC-ATCCAA-GCACCAAGG-TACCGATGGTGTC-CGAGGCTCCCGCACGACCA
* * * *
11780897 ATGGCCTAGGTTACCGATG--GCGC
62 AGGGCCAAGG-TGCCAATGCTGC-C
* * **** ** * *
11780920 CGAGGCTCTCACACATCCAAGCACCAAGGTGTTTATGGTCCCCGACGCTCCCGCAC-ATCCAAGC
1 CGAGGCTCCCGCACATCCAAGCACCAAGGTACCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGG
* * ** *
11780984 ACCAAAGTGCTGATGGTGCC
65 GCCAAGGTGCCAATGCTGCC
*
11781004 CGAGGCTCCCGCACAACCAA
1 CGAGGCTCCCGCACATCCAA
11781024 TGGCCTAGTT
Statistics
Matches: 290, Mismatches: 53, Indels: 35
0.77 0.14 0.09
Matches are distributed among these distances:
83 7 0.02
84 51 0.18
85 150 0.52
86 81 0.28
87 1 0.00
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.17
Consensus pattern (84 bp):
CGAGGCTCCCGCACATCCAAGCACCAAGGTACCGATGGTGTCCGAGGCTCCCGCACGACCAAGGG
CCAAGGTGCCAATGCTGCC
Found at i:11780826 original size:128 final size:128
Alignment explanation
Indices: 11780623--11781023 Score: 313
Period size: 128 Copynumber: 3.1 Consensus size: 128
11780613 TACGGTGTCT
* * *
11780623 GAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGTACATCCGAGCCA
1 GAGGCTCCCGCACATCCAAGCACCAAGGTACCAATGCTGCTCGAGGCTCCCGCACATCCAAGCCA
* * * *
11780688 CCAAGGTGCCGATGGTGCTCGAGGCTCCCGTACGACCAAGGGCCAAGGTTG-CTGATGGTGCCC
66 CCAAGGTGCCGATGATGCCCAAGGCTCCCGCACGACCAAGGGCCAAGGTTGTC-GATGGTGCCC
** * *
11780751 GAGGCTCCCGCACATCCAAGCACCAAGGTACTGATGGTG-TCCGAGGCTCTCGCACGA-CCAAG-
1 GAGGCTCCCGCACATCCAAGCACCAAGGTACCAATGCTGCT-CGAGGCTCCCGCAC-ATCCAAGC
** * * * * *
11780813 GGCCTAGGTTGCCGATGATGCCCAAGGCTCTCGCACGACCAATGGCCTAGGTTGTCGATGGTGCT
64 CACCAAGG-TGCCGATGATGCCCAAGGCTCCCGCACGACCAAGGGCCAAGGTTGTCGATGGTGCC
11780878 C
128 C
* * * * * *
11780879 GAGGCTCTCGCACGA-CCAATG-GCCTAGGTTACCGATGGC-GC-CGAGGCTCTCACACATCCAA
1 GAGGCTCCCGCAC-ATCCAA-GCACCAAGG-TACCAAT-GCTGCTCGAGGCTCCCGCACATCCAA
*** * * * * ** *
11780940 G-CACCAAGGTGTTTATGGTCCCCGACGCTCCCGCAC-ATCCAAGCACCAAAG-TG-CTGATGGT
62 GCCACCAAGGTGCCGATGATGCCCAAGGCTCCCGCACGA-CCAAGGGCCAAGGTTGTC-GATGGT
11781001 GCCC
125 GCCC
*
11781005 GAGGCTCCCGCACAACCAA
1 GAGGCTCCCGCACATCCAA
11781024 TGGCCTAGTT
Statistics
Matches: 218, Mismatches: 42, Indels: 28
0.76 0.15 0.10
Matches are distributed among these distances:
125 2 0.01
126 28 0.13
127 34 0.16
128 142 0.65
129 11 0.05
130 1 0.00
ACGTcount: A:0.21, C:0.34, G:0.28, T:0.17
Consensus pattern (128 bp):
GAGGCTCCCGCACATCCAAGCACCAAGGTACCAATGCTGCTCGAGGCTCCCGCACATCCAAGCCA
CCAAGGTGCCGATGATGCCCAAGGCTCCCGCACGACCAAGGGCCAAGGTTGTCGATGGTGCCC
Found at i:11781975 original size:58 final size:58
Alignment explanation
Indices: 11781906--11782024 Score: 184
Period size: 58 Copynumber: 2.1 Consensus size: 58
11781896 GGGAGGGACA
* * *
11781906 GGGAGGATTCATTCATTGTTGGGTACCGGACATGCAACGGTATCCGAATTCTACTTTT
1 GGGAGGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATTCTACCTTT
* * *
11781964 GGGATGATTCATTCATTATTGGGTACCGAACATGTAACGGTATCTGAATTCTACCTTT
1 GGGAGGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATTCTACCTTT
11782022 GGG
1 GGG
11782025 GATTGGGGAG
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.34
Consensus pattern (58 bp):
GGGAGGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATTCTACCTTT
Found at i:11797009 original size:21 final size:21
Alignment explanation
Indices: 11796985--11797028 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
11796975 GCCATTACTA
11796985 GGGTAATCCCGCCTGACCTGC
1 GGGTAATCCCGCCTGACCTGC
11797006 GGGTAATCCCGCCTGACCTGC
1 GGGTAATCCCGCCTGACCTGC
11797027 GG
1 GG
11797029 TCATGATGCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.14, C:0.36, G:0.32, T:0.18
Consensus pattern (21 bp):
GGGTAATCCCGCCTGACCTGC
Found at i:11800683 original size:43 final size:43
Alignment explanation
Indices: 11800619--11800718 Score: 105
Period size: 43 Copynumber: 2.3 Consensus size: 43
11800609 TTTTCTTTAG
* *
11800619 CCCGCACATCCGAGGCACTAGGGTGCCCATGCTG-CTCGAGGCA
1 CCCGCACATCCAAGGCACTAGGGTGCCCACGCTGTC-CGAGGCA
* * * * *
11800662 CCCGCACATCCAACGTC-CTAGGTTGCCTACGTTGTCCGAGGCT
1 CCCGCACATCCAA-GGCACTAGGGTGCCCACGCTGTCCGAGGCA
11800705 CCCGCACATCCAAG
1 CCCGCACATCCAAG
11800719 CACCAAGGTG
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
42 1 0.02
43 44 0.92
44 3 0.06
ACGTcount: A:0.19, C:0.39, G:0.25, T:0.17
Consensus pattern (43 bp):
CCCGCACATCCAAGGCACTAGGGTGCCCACGCTGTCCGAGGCA
Found at i:11800856 original size:128 final size:124
Alignment explanation
Indices: 11800770--11801686 Score: 747
Period size: 127 Copynumber: 7.2 Consensus size: 124
11800760 GGCACCAAGG
*
11800770 TGCCGATGGTGCCAGAGACTCCCTCACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCC
1 TGCCGATGGTGCC-GAG-CTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCC
* * *
11800835 CGCACGACCAAGGGCCTAGGTGCTGATGGT-CCCGAGGCTCTCGCATGACTAAGGGTCTAGGT
64 CGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTC-CGCAT-ACCAAGGGCCTAGGT
* * *
11800897 TGCCAATGGTGCTCGATGCTCCCACACGACCAGGGGCCTAGGTTGCCGATGGTGTCC-GAGGCTC
1 TGCCGATGGTGC-CGA-GCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCTGAGGCTC
** *
11800961 CCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTTCCGCATGACCAAGGGCCTAGG-
63 CCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGC-TCCGCAT-ACCAAGGGCCTAGGT
* * * * *
11801024 TACCGATGGTTCCGAGCTTCTC-TACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTTCC
1 TGCCGATGGTGCCGAGC-TCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCCC
** * ** * * * * *
11801088 TTACGACCAGGGGCCTAGGTTGCAAATAGAGCCCGAGGGTCCCGCATGACTAAGGGCCTAGAT
65 GCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCT-CCGCAT-ACCAAGGGCCTAGGT
* * * * * *
11801151 TGCTGATGGTTCCGAGGCTCTCGCACAACCAGGGGCCTAGGTTGCCGATGGTGTCTGAGGCTCCC
1 TGCCGATGGTGCCGA-GCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCCC
* * * * *
11801216 ACACGACCAGGGGCCTAGGTTACCGATGGTGCCAGAGGCTCCTGCACGACCAAGGGCCTAGGT
65 GCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCC-GCA-TACCAAGGGCCTAGGT
* * * * * *
11801279 TGCCGATGGTGCCCAATGCTCCCGCAAGACCAGGGGCCGAAGTTGCCGATGGTGCCTAAGGCTCC
1 TGCCGATGGTG-CCGA-GCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCC
* * * **
11801344 CGCACGACCAGGGGCTTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAACAGCCTAGGT
64 CGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCT-CCGCA-TACCAAGGGCCTAGGT
* * * * *
11801407 TGCCGATGGT-CCTGAGGCTCTCGCACGACCAAAGGCCTAGGTTACCGATGGTGCCCGAAGCTCC
1 TGCCGATGGTGCC-GA-GCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCC
* * * * *
11801471 CGCACTACCAAGGGCCTAGGTTACCGATGGCG-CAGAGGCTCTCGCACGACCAAGGGCCTAGGT
64 CGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTC-CGCA-TACCAAGGGCCTAGGT
*** ** * ** * * * * *
11801534 TGCCGATGCCACTAAGGCTCTCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTCCCCGAGGTTCT
1 TGCCGATGGTGCCGA-GCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCC
* ** * * * * * *
11801597 CGCGC-ATCCAAGCACCAAGGTGCTGATGGTGCCCAAGGCTCTCGCACAACCAATGGCCTAGTT
64 CGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTC-CGCA-TACCAAGGGCCTAGGT
11801660 TGCCGATGGTGTCCGAGACTCCCGCAC
1 TGCCGATGGTG-CCGAG-CTCCCGCAC
11801687 ATCTGAAGCA
Statistics
Matches: 647, Mismatches: 116, Indels: 54
0.79 0.14 0.07
Matches are distributed among these distances:
124 2 0.00
125 59 0.09
126 111 0.17
127 228 0.35
128 181 0.28
129 66 0.10
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.18
Consensus pattern (124 bp):
TGCCGATGGTGCCGAGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCCCG
CACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCGCATACCAAGGGCCTAGGT
Found at i:11800998 original size:42 final size:41
Alignment explanation
Indices: 11800640--11801730 Score: 645
Period size: 43 Copynumber: 25.7 Consensus size: 41
11800630 GAGGCACTAG
* * * * * *
11800640 GGTGCCCATGCTGCTCGAGGCACCCGCACATCCAACGTCCTA
1 GGTGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGGGCCTA
* * * * ** *
11800682 GGTTGCCTACGTTGTCCGAGGCTCCCGCACATCCAAGCACCAA
1 GG-TGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGGGCCTA
* * ** * * * * *
11800725 GGTGCCAATGCTGATCGAGGCTCCAGTACATCCGAGGCACCAA
1 GGTGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGG-GCCTA
* * *
11800768 GGTGCCGATGGTGCCAGAGACTCCCTCACGACCAAGGGCCTA
1 GGTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTA
*
11800810 GGTTGCCGATGGTGCCTGAGGCTCCCGCACGACCAAGGGCCTA
1 GG-TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTA
* * * * *
11800853 GGTGCTGATGGT-CCCGAGGCTCTCGCATGACTAAGGGTCTA
1 GGTGCCGATGGTGCCCGAGGCTCCCGCA-CACCAAGGGCCTA
* * * * *
11800894 GGTTGCCAATGGTGCTCGATGCTCCCACACGACCAGGGGCCTA
1 GG-TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTA
* ** *
11800937 GGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAA
1 GG-TGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGGGCCTA
* *
11800980 GGTGCCGATGGTGCCCGAGGCTTCCGCATGACCAAGGGCCTA
1 GGTGCCGATGGTGCCCGAGGCTCCCGCA-CACCAAGGGCCTA
* * * *
11801022 GGTACCGATGGT-TCCGA-GCTTCTC-TACGACCAAGGGCCTA
1 GGTGCCGATGGTGCCCGAGGC-TCCCGCAC-ACCAAGGGCCTA
* * ** *
11801062 GGTTGCCGATGGTGCCTGAGGCTTCCTTACGACCAGGGGCCTA
1 GG-TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTA
** * * * * *
11801105 GGTTGCAAATAGAGCCCGAGGGTCCCGCATGACTAAGGGCCTA
1 GG-TGCCGATGGTGCCCGAGGCTCCCGCA-CACCAAGGGCCTA
* * * * *
11801148 GATTGCTGATGGT-TCCGAGGCTCTCGCACAACCAGGGGCCTA
1 G-GTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTA
* * * *
11801190 GGTTGCCGATGGTGTCTGAGGCTCCCACACGACCAGGGGCCTA
1 GG-TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTA
* * *
11801233 GGTTACCGATGGTGCCAGAGGCTCCTGCACGACCAAGGGCCTA
1 GG-TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTA
* * * * *
11801276 GGTTGCCGATGGTGCCCAATGCTCCCGCAAGACCAGGGGCCGAA
1 GG-TGCCGATGGTGCCCGAGGCTCCCGC-ACACCAAGGGCC-TA
* ** * *
11801320 GTTGCCGATGGTGCCTAAGGCTCCCGCACGACCAGGGGCTTA
1 GGTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTA
**
11801362 GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAACAGCCTA
1 GGTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTA
* * *
11801404 GGTTGCCGATGGT-CCTGAGGCTCTCGCACGACCAAAGGCCTA
1 GG-TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTA
* *
11801446 GGTTACCGATGGTGCCCGAAGCTCCCGCACTACCAAGGGCCTA
1 GG-TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTA
* * * *
11801489 GGTTACCGATGGCG-CAGAGGCTCTCGCACGACCAAGGGCCTA
1 GG-TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTA
* * ** *
11801531 GGTTGCCGA---TGCCACTAAGGCTCTCGCACATCCAAGCACCAA
1 GG-TGCCGATGGTGCC-C-GAGGCTCCCGCACA-CCAAGGGCCTA
* * * * ** *
11801573 GGTGCCGATGGTCCCCGAGGTTCTCGCGCATCCAAGCACCAA
1 GGTGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGGGCCTA
* * * *
11801615 GGTGCTGATGGTGCCCAAGGCTCTCGCACAACCAATGGCCTA
1 GGTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTA
* * * * ** *
11801657 GTTTGCCGATGGTGTCCGAGACTCCCGCACATCTGAAGCACCAA
1 G-GTGCCGATGGTGCCCGAGGCTCCCGCACA-C-CAAGGGCCTA
* * *
11801701 GGTACCGATGCTGCTCGAGGCTCCCGCACA
1 GGTGCCGATGGTGCCCGAGGCTCCCGCACA
11801731 TCTGAGGCTC
Statistics
Matches: 827, Mismatches: 185, Indels: 73
0.76 0.17 0.07
Matches are distributed among these distances:
39 1 0.00
40 18 0.02
41 47 0.06
42 317 0.38
43 431 0.52
44 13 0.02
ACGTcount: A:0.20, C:0.32, G:0.30, T:0.18
Consensus pattern (41 bp):
GGTGCCGATGGTGCCCGAGGCTCCCGCACACCAAGGGCCTA
Found at i:11801013 original size:85 final size:84
Alignment explanation
Indices: 11800770--11801686 Score: 743
Period size: 85 Copynumber: 10.8 Consensus size: 84
11800760 GGCACCAAGG
* * * *
11800770 TGCCGATGGTGCCAGAGACTCCCTCACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT-C
11800835 CGCACGACCAAGGGCCTAGG-
64 CGCACGACCAAGGGCCTAGGT
* * * * * * * *
11800855 TGCTGATGGT-CCCGAGGCTCTCGCATGACTAAGGGTCTAGGTTGCCAATGGTGCTCGATGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCA-CACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT-C
* *
11800919 CACACGACCAGGGGCCTAGGT
64 CGCACGACCAAGGGCCTAGGT
* ** *
11800940 TGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGC-TC
*
11801004 CGCATGACCAAGGGCCTAGG-
64 CGCACGACCAAGGGCCTAGGT
* * * * *
11801024 TACCGATGGT-TCCGA-GCTTCTC-TACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTT
1 TGCCGATGGTGCCCGAGGC-TCCCGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGC-T
** *
11801086 CCTTACGACCAGGGGCCTAGGT
63 CCGCACGACCAAGGGCCTAGGT
** * * * * * * * *
11801108 TGCAAATAGAGCCCGAGGGTCCCGCATGACTAAGGGCCTAGATTGCTGATGGT-TCCGAGGCTCT
1 TGCCGATGGTGCCCGAGGCTCCCGCA-CACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTC-
* *
11801172 CGCACAACCAGGGGCCTAGGT
64 CGCACGACCAAGGGCCTAGGT
* * * * * *
11801193 TGCCGATGGTGTCTGAGGCTCCCACACGACCAGGGGCCTAGGTTACCGATGGTGCCAGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
11801258 TGCACGACCAAGGGCCTAGGT
65 -GCACGACCAAGGGCCTAGGT
* * * * * * **
11801279 TGCCGATGGTGCCCAATGCTCCCGCAAGACCAGGGGCCGAAGTTGCCGATGGTGCCTAAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGC-ACACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT-C
* *
11801344 CGCACGACCAGGGGCTTAGG-
64 CGCACGACCAAGGGCCTAGGT
** *
11801364 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAACAGCCTAGGTTGCCGATGGT-CCTGAGGCTCT
1 TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTC-
*
11801428 CGCACGACCAAAGGCCTAGGT
64 CGCACGACCAAGGGCCTAGGT
* * * * *
11801449 TACCGATGGTGCCCGAAGCTCCCGCACTACCAAGGGCCTAGGTTACCGATGGCG-CAGAGGCTCT
1 TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTC-
11801513 CGCACGACCAAGGGCCTAGGT
64 CGCACGACCAAGGGCCTAGGT
* * ** * * *
11801534 TGCCGA---TGCCACTAAGGCTCTCGCACATCCAAGCACCAAGG-TGCCGATGGTCCCCGAGGTT
1 TGCCGATGGTGCC-C-GAGGCTCCCGCACA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* ** *
11801595 CTCGCGC-ATCCAAGCACCAAGG-
63 C-CGCACGA-CCAAGGGCCTAGGT
* * * * * * *
11801617 TGCTGATGGTGCCCAAGGCTCTCGCACAACCAATGGCCTAGTTTGCCGATGGTGTCCGAGACTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT-C
11801682 CGCAC
64 CGCAC
11801687 ATCTGAAGCA
Statistics
Matches: 661, Mismatches: 137, Indels: 68
0.76 0.16 0.08
Matches are distributed among these distances:
82 18 0.03
83 63 0.10
84 165 0.25
85 268 0.41
86 144 0.22
87 3 0.00
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.18
Consensus pattern (84 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCG
CACGACCAAGGGCCTAGGT
Found at i:11801687 original size:43 final size:43
Alignment explanation
Indices: 11800770--11801686 Score: 828
Period size: 43 Copynumber: 21.6 Consensus size: 43
11800760 GGCACCAAGG
* * *
11800770 TGCCGATGGTGCCAGAGACTCCCTCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
*
11800813 TGCCGATGGTGCCTGAGGCTCCCGCACGACCAAGGGCCTAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
11800855 TGCTGATGGT-CCCGAGGCTCTCGCATGACTAAGGGTCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
11800897 TGCCAATGGTGCTCGATGCTCCCACACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* ** *
11800940 TGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* *
11800982 TGCCGATGGTGCCCGAGGCTTCCGCATGACCAAGGGCCTAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
11801024 TACCGATGGT-TCCGA-GCTTCTC-TACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGC-TCCCGCACGACCAAGGGCCTAGGT
* * ** *
11801065 TGCCGATGGTGCCTGAGGCTTCCTTACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
** * * * * * *
11801108 TGCAAATAGAGCCCGAGGGTCCCGCATGACTAAGGGCCTAGAT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
11801151 TGCTGATGGT-TCCGAGGCTCTCGCACAACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
11801193 TGCCGATGGTGTCTGAGGCTCCCACACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
11801236 TACCGATGGTGCCAGAGGCTCCTGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * * *
11801279 TGCCGATGGTGCCCAATGCTCCCGCAAGACCAGGGGCCGAAGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
** * *
11801322 TGCCGATGGTGCCTAAGGCTCCCGCACGACCAGGGGCTTAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
**
11801364 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAACAGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
11801407 TGCCGATGGT-CCTGAGGCTCTCGCACGACCAAAGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
11801449 TACCGATGGTGCCCGAAGCTCCCGCACTACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
11801492 TACCGATGGCG-CAGAGGCTCTCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * ** *
11801534 TGCCGA---TGCCACTAAGGCTCTCGCAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCC-C-GAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * * * ** *
11801575 TGCCGATGGTCCCCGAGGTTCTCGCGC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * * * * *
11801617 TGCTGATGGTGCCCAAGGCTCTCGCACAACCAATGGCCTAGTT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
11801660 TGCCGATGGTGTCCGAGACTCCCGCAC
1 TGCCGATGGTGCCCGAGGCTCCCGCAC
11801687 ATCTGAAGCA
Statistics
Matches: 709, Mismatches: 144, Indels: 42
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.00
40 19 0.03
41 48 0.07
42 281 0.40
43 357 0.50
44 3 0.00
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.18
Consensus pattern (43 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
Found at i:11801709 original size:43 final size:43
Alignment explanation
Indices: 11801548--11801814 Score: 213
Period size: 43 Copynumber: 6.3 Consensus size: 43
11801538 GATGCCACTA
* * * * *
11801548 AGGCTCTCGCACATC-CAAGCACCAAGGTGCCGATGGTCCCCG
1 AGGCTCCCGCACATCTGAAGCACCAAGGTGCCGATGCTGCTCG
* * * * * * * *
11801590 AGGTTCTCGCGCATC-CAAGCACCAAGGTGCTGATGGTGCCCA
1 AGGCTCCCGCACATCTGAAGCACCAAGGTGCCGATGCTGCTCG
* * * * * * *
11801632 AGGCTCTCGCACAAC-CAATG-GCCTAGTTTGCCGATGGTG-TCCG
1 AGGCTCCCGCACATCTGAA-GCACCAAG-GTGCCGATGCTGCT-CG
* *
11801675 AGACTCCCGCACATCTGAAGCACCAAGGTACCGATGCTGCTCG
1 AGGCTCCCGCACATCTGAAGCACCAAGGTGCCGATGCTGCTCG
* * * *
11801718 AGGCTCCCGCACATCTGAGGCTCCAAGTTGTCGATGCTGCTCG
1 AGGCTCCCGCACATCTGAAGCACCAAGGTGCCGATGCTGCTCG
11801761 AGGCTCCCGCACATCTG-AGCACCAAGGTGCCGATGCTGCTCG
1 AGGCTCCCGCACATCTGAAGCACCAAGGTGCCGATGCTGCTCG
* *
11801803 AAGCTCTCGCAC
1 AGGCTCCCGCAC
11801815 CACCGACGTC
Statistics
Matches: 184, Mismatches: 35, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
42 87 0.47
43 90 0.49
44 7 0.04
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.19
Consensus pattern (43 bp):
AGGCTCCCGCACATCTGAAGCACCAAGGTGCCGATGCTGCTCG
Found at i:11801723 original size:86 final size:85
Alignment explanation
Indices: 11801548--11801814 Score: 238
Period size: 86 Copynumber: 3.1 Consensus size: 85
11801538 GATGCCACTA
* * * * * ** * * *
11801548 AGGCTCTCGCACATCCAA-GCACCAAGGTGCCGATGGTCCCCGAGGTTCTCGCGCATC-CAAGCA
1 AGGCTCTCGCACAACCAAGGC-CCAAGTTGCCGATGCTGCTCGAGACTCCCGCACATCTGAAGCA
* * * *
11801611 CCAAGGTGCTGATGGTGCCCA
65 CCAAGGTGCCGATGCTGCTCG
* *
11801632 AGGCTCTCGCACAACCAATGG-CCTAGTTTGCCGATGGTG-TCCGAGACTCCCGCACATCTGAAG
1 AGGCTCTCGCACAACCAA-GGCCCAAG-TTGCCGATGCTGCT-CGAGACTCCCGCACATCTGAAG
*
11801695 CACCAAGGTACCGATGCTGCTCG
63 CACCAAGGTGCCGATGCTGCTCG
* * ** * *
11801718 AGGCTCCCGCACATCTGAGGCTCCAAGTTGTCGATGCTGCTCGAGGCTCCCGCACATCTG-AGCA
1 AGGCTCTCGCACAACCAAGGC-CCAAGTTGCCGATGCTGCTCGAGACTCCCGCACATCTGAAGCA
11801782 CCAAGGTGCCGATGCTGCTCG
65 CCAAGGTGCCGATGCTGCTCG
*
11801803 AAGCTCTCGCAC
1 AGGCTCTCGCAC
11801815 CACCGACGTC
Statistics
Matches: 149, Mismatches: 26, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
84 21 0.14
85 59 0.40
86 64 0.43
87 5 0.03
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.19
Consensus pattern (85 bp):
AGGCTCTCGCACAACCAAGGCCCAAGTTGCCGATGCTGCTCGAGACTCCCGCACATCTGAAGCAC
CAAGGTGCCGATGCTGCTCG
Found at i:11801799 original size:42 final size:42
Alignment explanation
Indices: 11801505--11801814 Score: 223
Period size: 42 Copynumber: 7.3 Consensus size: 42
11801495 CGATGGCGCA
** * **
11801505 GAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGCCACT-
1 GAGGCTCTCGCAC-ATCCAAGCACCAAGG-TGCCGATGCTGCTC
* * * *
11801547 AAGGCTCTCGCACATCCAAGCACCAAGGTGCCGATGGTCCCC
1 GAGGCTCTCGCACATCCAAGCACCAAGGTGCCGATGCTGCTC
* * * * *
11801589 GAGGTTCTCGCGCATCCAAGCACCAAGGTGCTGATGGTGCCC
1 GAGGCTCTCGCACATCCAAGCACCAAGGTGCCGATGCTGCTC
* * * * * *
11801631 AAGGCTCTCGCACAACCAATG-GCCTAGTTTGCCGATGGTG-TCC
1 GAGGCTCTCGCACATCCAA-GCACCAAG-GTGCCGATGCTGCT-C
* * * *
11801674 GAGACTCCCGCACATCTGAAGCACCAAGGTACCGATGCTGCTC
1 GAGGCTCTCGCACATC-CAAGCACCAAGGTGCCGATGCTGCTC
* * * * * *
11801717 GAGGCTCCCGCACATCTGAGGCTCCAAGTTGTCGATGCTGCTC
1 GAGGCTCTCGCACATC-CAAGCACCAAGGTGCCGATGCTGCTC
* **
11801760 GAGGCTCCCGCACATCTGAGCACCAAGGTGCCGATGCTGCTC
1 GAGGCTCTCGCACATCCAAGCACCAAGGTGCCGATGCTGCTC
*
11801802 GAAGCTCTCGCAC
1 GAGGCTCTCGCAC
11801815 CACCGACGTC
Statistics
Matches: 214, Mismatches: 46, Indels: 16
0.78 0.17 0.06
Matches are distributed among these distances:
41 10 0.05
42 109 0.51
43 88 0.41
44 7 0.03
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.18
Consensus pattern (42 bp):
GAGGCTCTCGCACATCCAAGCACCAAGGTGCCGATGCTGCTC
Found at i:11802068 original size:24 final size:24
Alignment explanation
Indices: 11802036--11802159 Score: 149
Period size: 24 Copynumber: 5.2 Consensus size: 24
11802026 TCTATATTTT
*
11802036 GGGATGGCTCACCGGAGCACCACC
1 GGGATGGCTCACCGGAGCACCGCC
* * *
11802060 GGGATGGCTCGCCGAAGCACCTCC
1 GGGATGGCTCACCGGAGCACCGCC
* *
11802084 GGGATGCCTCACCGGAGCACCGCT
1 GGGATGGCTCACCGGAGCACCGCC
*
11802108 GGGATGGCTCACTGGAGCACCGCC
1 GGGATGGCTCACCGGAGCACCGCC
* * * *
11802132 GGAATGGATCGCCCGAGCACCGCC
1 GGGATGGCTCACCGGAGCACCGCC
11802156 GGGA
1 GGGA
11802160 ACCTAACCGG
Statistics
Matches: 83, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 83 1.00
ACGTcount: A:0.19, C:0.35, G:0.35, T:0.10
Consensus pattern (24 bp):
GGGATGGCTCACCGGAGCACCGCC
Found at i:11802664 original size:58 final size:59
Alignment explanation
Indices: 11802562--11802682 Score: 165
Period size: 58 Copynumber: 2.1 Consensus size: 59
11802552 GGAAGGGACA
* * * *
11802562 GGGACGATTCATTCATTGTTTGGTACCAGACATGCAACGGTATCCAAATTCTACC-TTT
1 GGGACGATTCATTCATTATTGGGTACCAGACAAGCAACGATATCCAAATTCTACCTTTT
* *
11802620 GGGACGATTCATTCATTATTGGGTACC-GAACAAGTAACGATATCCGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCAG-ACAAGCAACGATATCCAAATTCTACCTTTT
11802679 GGGA
1 GGGA
11802683 TTAGAGAGAG
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
57 1 0.02
58 47 0.85
59 7 0.13
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCAGACAAGCAACGATATCCAAATTCTACCTTTT
Found at i:11806174 original size:35 final size:35
Alignment explanation
Indices: 11806135--11806204 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 35
11806125 CATCTCTGAA
* *
11806135 GCTTGGCAAATATGGAAAGTAATCTTCAAAGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
* *
11806170 GCTTGGAAAATATGGAAGGGGATCTTCAAAGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
11806205 ACGATCCTAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.39, C:0.10, G:0.24, T:0.27
Consensus pattern (35 bp):
GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
Found at i:11811571 original size:56 final size:56
Alignment explanation
Indices: 11811485--11811604 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
11811475 ACAAGGGATG
11811485 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
11811541 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
11811597 ATGGGCAA
1 ATGGGCAA
11811605 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:11813106 original size:47 final size:47
Alignment explanation
Indices: 11813052--11813505 Score: 637
Period size: 47 Copynumber: 9.6 Consensus size: 47
11813042 TATTTGAATA
* * *
11813052 AATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
11813099 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
11813148 AATGTGAAAGTGTATATATGTGATAAGGCCGAGTGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
11813195 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
11813244 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
11813291 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
11813338 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
11813385 AATGTGAACA-TGCATATATGAGATAAGGCCGAAAGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
11813432 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
11813479 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
11813506 TCCCGAAGGG
Statistics
Matches: 373, Mismatches: 28, Indels: 12
0.90 0.07 0.03
Matches are distributed among these distances:
46 1 0.00
47 280 0.75
49 91 0.24
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.27
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:11815532 original size:35 final size:35
Alignment explanation
Indices: 11815493--11815562 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
11815483 TCTCTGGAGT
*
11815493 TTGGAAAATATGGAAAGTAATCTTCAAAGATATGC
1 TTGGAAAATATGGAAAGGAATCTTCAAAGATATGC
* *
11815528 TTGGAAAATATGGAAGGGGATCTTCAAAGATATGC
1 TTGGAAAATATGGAAAGGAATCTTCAAAGATATGC
11815563 GATCCTAGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.27
Consensus pattern (35 bp):
TTGGAAAATATGGAAAGGAATCTTCAAAGATATGC
Found at i:11821879 original size:85 final size:86
Alignment explanation
Indices: 11821768--11821960 Score: 196
Period size: 85 Copynumber: 2.3 Consensus size: 86
11821758 GGTTTCCTAC
* * * * * *
11821768 GGTGACCGAGGCTCCCACAC-ATCCAAGCACCAAGG-TGCCAATGCTG-CTCGAGGGTTCCGTAC
1 GGTGCCCGAGGCTCTCGCACGATCCAAGCACCAAGGTTGCCAATGCTGTCT-GAGGCTACCGCAC
* *
11821830 ATCCGAGCCACCAAGGTGCCAAT
65 ATCCAAG-CACCAAGATGCCAAT
** * * *
11821853 GGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCTGAGGCTACCGCACA
1 GGTGCCCGAGGCTCTCGCACGATCCAAGCACCAAGGTTGCCAATGCTGTCTGAGGCTACCGCACA
*
11821917 TCCAAGCACCAAGATGCCGAT
66 TCCAAGCACCAAGATGCCAAT
* *
11821938 GGTGCCCAAGACTCTCGCACGAT
1 GGTGCCCGAGGCTCTCGCACGAT
11821961 GAAGGCCTAG
Statistics
Matches: 88, Mismatches: 16, Indels: 7
0.79 0.14 0.06
Matches are distributed among these distances:
85 60 0.68
86 26 0.30
87 2 0.02
ACGTcount: A:0.23, C:0.33, G:0.28, T:0.16
Consensus pattern (86 bp):
GGTGCCCGAGGCTCTCGCACGATCCAAGCACCAAGGTTGCCAATGCTGTCTGAGGCTACCGCACA
TCCAAGCACCAAGATGCCAAT
Found at i:11822485 original size:339 final size:339
Alignment explanation
Indices: 11821851--11822760 Score: 920
Period size: 339 Copynumber: 2.7 Consensus size: 339
11821841 CAAGGTGCCA
* * * * ** *
11821851 ATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCTGAGGCTACCGCAC
1 ATGGTGCCCGAGACTCCCGTACGACCAAGGGCCTAGGTTGCCGATGGT-CCCAAGGCTCCCGCAC
** * * * * * * * ** * * *
11821916 -ATCCAAGCACC-AAGATGCCGATGGTGCCCAAGACTCTCGCACGATGAAG-GCCTAGGTTACCG
65 GA-CCAAGGGCCTAGGTTACCGATGGTACCCGAGGCTCCCGCACGACCAAGCACCAAGGTTGCCG
* * * * *
11821978 ATGGTGCTCGAGGCTCCTGCACGACCAGGGACCTAGGTTACTGATGGTGCCCGAGGCTCCCACAC
129 ATGGTGCCCGAGGCTCCTGCACGACAAGGG-CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
* * * * * *
11822043 GACCAAGGGCCTAGGTT-ACCGATGGTGTCCAAGGCTCCCGCACATCTAACCACCAAGGTGCCGA
193 GACCAGGGGCCTAGGTTGA-CGATGGTGCCCGAGGCTCCCACACATCCAACCACCAAGGTACCGA
* * ** * ** **
11822107 TGGTGCCCGAGGCTCCCGCAGGACCAAGGACCTAGGTGCCGGTGGT-CCCAAGGCTTTCACACGA
257 TAGTGCCCGAGGCTCCCGCAGCACCAACCACCAAGGTGCCAATGGTGCCCAAGGCTCCCACACGA
**
11822171 CCAAGGGCCTAGGTTGTCG
322 CCAAGGGCCTAGG-TACCG
* * * *
11822190 ATGGTGCCCGAGGCTCCCGTATGACC-AGAGGCCTAGGTTGCCGGTGGTGCCAAGGCTCCCGCAC
1 ATGGTGCCCGAGACTCCCGTACGACCAAG-GGCCTAGGTTGCCGATGGTCCCAAGGCTCCCGCAC
* * * * *
11822254 GACCAAGGGCCTATGTTGCCGATGGTGCCCGAGGCTCCCGTAC-ATCTAAGCACCAAGG-TGCCG
65 GACCAAGGGCCTAGGTTACCGATGGTACCCGAGGCTCCCGCACGA-CCAAGCACCAAGGTTGCCG
* *
11822317 ATGGTGCCCGAGGCTCCCGCATGACTAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
129 ATGGTGCCCGAGGCTCCTGCACGAC-AAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
* * * *
11822382 GACCAGGGGCCTAGGTTGAAGATGGTGCCCGAGGCTCTCATACATCCAAGCACCAAGGTACCGAT
193 GACCAGGGGCCTAGGTTGACGATGGTGCCCGAGGCTCCCACACATCCAACCACCAAGGTACCGAT
* * *** **
11822447 AGTGCCCGAGGCTCCTGCA-CATTCAACCACCAAGGTGCCAATGGTGCTTGAGGCTCCCGTACGA
258 AGTGCCCGAGGCTCCCGCAGCA-CCAACCACCAAGGTGCCAATGGTGCCCAAGGCTCCCACACGA
11822511 CCAAGGGCCTAGGTACCG
322 CCAAGGGCCTAGGTACCG
* * * **
11822529 ATGGTGCCTGAGACTCCCGTACGACCAAGGGGCTAGGTTGCCGATGGTCCCGAGGCTTTCGCACG
1 ATGGTGCCCGAGACTCCCGTACGACCAAGGGCCTAGGTTGCCGATGGTCCCAAGGCTCCCGCACG
* ** * *
11822594 ACCAAGGGCCTAGGTTACCGATGGTACCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGTCGAT
66 ACCAAGGGCCTAGGTTACCGATGGTACCCGAGGCTCCCGCACGACCAAGCACCAAGGTTGCCGAT
* * * * * * *
11822659 GGTGCCCAAGGCTCCTGCAGGACCAGGGGCCTAGGTTGCCAATGGTGCCCGAGGCTCTCGTACAA
131 GGTGCCCGAGGCTCCTGCACGA-CAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA
*
11822724 CCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
195 CCAGGGGCCTAGGTTGACGATGGTGCCCGAGGCTCCC
11822761 GCACGACTAG
Statistics
Matches: 472, Mismatches: 86, Indels: 25
0.81 0.15 0.04
Matches are distributed among these distances:
338 23 0.05
339 316 0.67
340 132 0.28
341 1 0.00
ACGTcount: A:0.20, C:0.32, G:0.32, T:0.17
Consensus pattern (339 bp):
ATGGTGCCCGAGACTCCCGTACGACCAAGGGCCTAGGTTGCCGATGGTCCCAAGGCTCCCGCACG
ACCAAGGGCCTAGGTTACCGATGGTACCCGAGGCTCCCGCACGACCAAGCACCAAGGTTGCCGAT
GGTGCCCGAGGCTCCTGCACGACAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGAC
CAGGGGCCTAGGTTGACGATGGTGCCCGAGGCTCCCACACATCCAACCACCAAGGTACCGATAGT
GCCCGAGGCTCCCGCAGCACCAACCACCAAGGTGCCAATGGTGCCCAAGGCTCCCACACGACCAA
GGGCCTAGGTACCG
Found at i:11822533 original size:42 final size:43
Alignment explanation
Indices: 11821846--11822874 Score: 939
Period size: 43 Copynumber: 24.2 Consensus size: 43
11821836 GCCACCAAGG
* *
11821846 TGCCAATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * ** * *
11821889 TGCCGATGGTGTCTGAGGCTACCGCAC-ATCCAAGCACC-AAGA
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * * **
11821931 TGCCGATGGTGCCCAAGACTCTCGCACGATGAA-GGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
11821973 TACCGATGGTGCTCGAGGCTCCTGCACGACC-AGGGACCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG-CCTAGGT
* * *
11822016 TACTGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *** *
11822059 TACCGATGGTGTCCAAGGCTCCCGCAC-ATCTAACCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* *
11822101 TGCCGATGGTGCCCGAGGCTCCCGCAGGACCAAGGACCTAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * ** *
11822143 TGCCGGTGGT-CCCAAGGCTTTCACACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
11822185 TGTCGATGGTGCCCGAGGCTCCCGTATGACC-AGAGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG-GGCCTAGGT
* * *
11822228 TGCCGGTGGTG-CCAAGGCTCCCGCACGACCAAGGGCCTATGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * ** *
11822270 TGCCGATGGTGCCCGAGGCTCCCGTAC-ATCTAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* *
11822312 TGCCGATGGTGCCCGAGGCTCCCGCATGACTAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
*
11822355 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
** * ** ** *
11822398 TGAAGATGGTGCCCGAGGCTCTCATAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * * * *** *
11822440 TACCGATAGTGCCCGAGGCTCCTGCAC-ATTCAACCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* ** *
11822482 TGCCAATGGTGCTTGAGGCTCCCGTACGACCAAGGGCCTAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
11822524 TACCGATGGTGCCTGAGACTCCCGTACGACCAAGGGGCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
**
11822567 TGCCGATGGT-CCCGAGGCTTTCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
11822609 TACCGATGGTACCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
11822652 TGTCGATGGTGCCCAAGGCTCCTGCAGGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
11822695 TGCCAATGGTGCCCGAGGCTCTCGTACAACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
11822738 TGCCGATGGTGCCCGAGGCTCCCGCACGACTAGGGGCTTAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
11822780 TGCTGATGGTGCCTGAGGCTCCCGTACGACCAACGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
11822823 TGTCGATTGT-CCCGAGGCTCCCACACGACC-AGGGTCCCAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG-CCTAGGT
11822865 TGCCGATGGT
1 TGCCGATGGT
11822875 ATACCAGCAC
Statistics
Matches: 793, Mismatches: 171, Indels: 45
0.79 0.17 0.04
Matches are distributed among these distances:
41 31 0.04
42 374 0.47
43 384 0.48
44 4 0.01
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (43 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
Found at i:11822873 original size:85 final size:85
Alignment explanation
Indices: 11821846--11822874 Score: 881
Period size: 85 Copynumber: 12.1 Consensus size: 85
11821836 GCCACCAAGG
* * * * *
11821846 TGCCAATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCTGAGGCTAC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* * * *
11821911 CGCAC-ATCCA-AGCACCAAGA
66 CGCACGA-CCAGGGC-CTAGGT
* * * ** * *
11821931 TGCCGATGGTGCCCAAGACTCTCGCACGATGAA-GGCCTAGGTTACCGATGGTGCTCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
*
11821995 TGCACGACCAGGGACCTAGGT
66 CGCACGACCAGGG-CCTAGGT
* * * * * *
11822016 TACTGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTACCGATGGTGTCCAAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* *** *
11822081 CGCAC-ATCTAACCACCAAGG-
66 CGCACGA-C-CAGGGCCTAGGT
* * * * **
11822101 TGCCGATGGTGCCCGAGGCTCCCGCAGGACCAAGGACCTAGG-TGCCGGTGGT-CCCAAGGCTTT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
*
11822164 CACACGACCAAGGGCCTAGGT
66 CGCACGACC-AGGGCCTAGGT
* * * * *
11822185 TGTCGATGGTGCCCGAGGCTCCCGTATGACC-AGAGGCCTAGGTTGCCGGTGGTG-CCAAGGCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG-GGCCTAGGTTGCCGATGGTGCCCGAGGCTC
*
11822248 CCGCACGACCAAGGGCCTATGT
65 CCGCACGACC-AGGGCCTAGGT
* * ** *
11822270 TGCCGATGGTGCCCGAGGCTCCCGTAC-ATCTAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTC
* *
11822333 CCGCATGACTAAGGGCCTAGGT
65 CCGCACGAC-CAGGGCCTAGGT
* ** *
11822355 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGAAGATGGTGCCCGAGGCTCT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
** ** *
11822420 CATAC-ATCCAAGCACCAAGG-
66 CGCACGA-CC-AGGGCCTAGGT
* * * * *** * * **
11822440 TACCGATAGTGCCCGAGGCTCCTGCAC-ATTCAACCACCAAGG-TGCCAATGGTGCTTGAGGCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTC
*
11822503 CCGTACGACCAAGGGCCTAGG-
65 CCGCACGACC-AGGGCCTAGGT
* * * * * **
11822524 TACCGATGGTGCCTGAGACTCCCGTACGACCAAGGGGCTAGGTTGCCGATGGT-CCCGAGGCTTT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
11822588 CGCACGACCAAGGGCCTAGGT
66 CGCACGACC-AGGGCCTAGGT
* * * * *
11822609 TACCGATGGTACCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGTCGATGGTGCCCAAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* *
11822674 TGCAGGACCAGGGGCCTAGGT
66 CGCACGACCA-GGGCCTAGGT
* * * * *
11822695 TGCCAATGGTGCCCGAGGCTCTCGTACAACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* *
11822760 CGCACGACTAGGGGCTTAGG-
66 CGCACGACCA-GGGCCTAGGT
* * * * * *
11822780 TGCTGATGGTGCCTGAGGCTCCCGTACGACCAACGGCCTAGGTTGTCGATTGT-CCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* *
11822844 CACACGACCAGGGTCCCAGGT
66 CGCACGACCAGGG-CCTAGGT
11822865 TGCCGATGGT
1 TGCCGATGGT
11822875 ATACCAGCAC
Statistics
Matches: 758, Mismatches: 157, Indels: 58
0.78 0.16 0.06
Matches are distributed among these distances:
83 24 0.03
84 197 0.26
85 367 0.48
86 169 0.22
87 1 0.00
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (85 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
CGCACGACCAGGGCCTAGGT
Found at i:11823658 original size:85 final size:85
Alignment explanation
Indices: 11823547--11823738 Score: 185
Period size: 85 Copynumber: 2.3 Consensus size: 85
11823537 GGTTTCCTAC
* * * * *
11823547 GGTGACCGAGGCTCCCACAC-ATCCAAGCACCAAGG-TGCCAATGCTG-CTCGAGGGTTCCGTAC
1 GGTG-CCGAGGCTCTCGCACGATCCAAGCACCAAGGTTGCCAATGCTGTCT-GAGGCTACCGCAC
* *
11823609 ATCCGAGCCACCAAGGTGCCAAT
64 ATCCAAG-CACCAAGATGCCAAT
** * * *
11823632 GGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCTGAGGCTACCGCACA
1 GGTG-CCGAGGCTCTCGCACGATCCAAGCACCAAGGTTGCCAATGCTGTCTGAGGCTACCGCACA
*
11823696 TCCAAGCACCAAGATGCCGAT
65 TCCAAGCACCAAGATGCCAAT
* *
11823717 GGTGCCAAGACTCTCGCACGAT
1 GGTGCCGAGGCTCTCGCACGAT
11823739 GAAGGCCTAG
Statistics
Matches: 87, Mismatches: 16, Indels: 8
0.78 0.14 0.07
Matches are distributed among these distances:
84 15 0.17
85 44 0.51
86 26 0.30
87 2 0.02
ACGTcount: A:0.23, C:0.33, G:0.28, T:0.16
Consensus pattern (85 bp):
GGTGCCGAGGCTCTCGCACGATCCAAGCACCAAGGTTGCCAATGCTGTCTGAGGCTACCGCACAT
CCAAGCACCAAGATGCCAAT
Found at i:11823707 original size:128 final size:128
Alignment explanation
Indices: 11823474--11824580 Score: 795
Period size: 128 Copynumber: 8.7 Consensus size: 128
11823464 TTTTCTTTAG
* * ** * * * * *
11823474 CCCGCACATCCAAGGCACC-AGGGTGCCCCTGCTGCTCGAGGCACCCGCAC-ATCCAACGTCCTA
1 CCCGCACATCCGA-GCACCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTA
* * * * * * * *
11823537 GGTTTCCTACGGTGACCGAGGCTCCCACACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGGT
64 GGTTGCCGATGGTGCCCGAGGCTCCCACACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
* * * *
11823602 TCCGTACATCCGAGCCACCAAGG-TGCCAATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAG
1 CCCGCACATCCGAG-CACCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * * * * * *
11823666 GTTGCCGATGGTGTCTGAGGCTACCGCACATCCAAGCACCAAGATGCCGATGGTG-CCAAGACT
65 GTTGCCGATGGTGCCCGAGGCTCCCACACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
* * * * * *
11823729 CTCGCACGAT--GAAG-GCCTAGGTTACCGATGGTGCTCGAGGCTCCCGCACGACCAGGGGCCTA
1 CCCGCAC-ATCCG-AGCACCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
* ** * * * *
11823791 GGTTACCGATGGTGCCCGAGGCTCCCACACGA-CCAAGGGCCTAGGTTACCGATGGTGTCCAAGG
64 GGTTGCCGATGGTGCCCGAGGCTCCCACAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGG
11823855 CT
127 CT
** * * *
11823857 CCCGCACATCTAACCACCAAGG-TGCCGATGGTGCCCGAGGCT-CCGCAGGACCAAGGACCTAGG
1 CCCGCACATCCGAGCACCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
* * ** ** * *
11823920 -TGCCGGTGGT-CCCAAGGCTTTCACACGA-CCAAGGGCCTAGGTTGTCGATGGTGCCCGAGGCT
66 TTGCCGATGGTGCCCGAGGCTCCCACAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCT
* * * * * *
11823982 CCCGTATGA-CCAGAG-GCCTAGGTTGCCGGTGGTGCCCAAGGCTCCCGCACGACCAAGGGCCTA
1 CCCGCA-CATCC-GAGCACCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
* ** *
11824045 TGTTGCCGATGGTGCCCGAGGCTCCCGTACATCTAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
64 GGTTGCCGATGGTGCCCGAGGCTCCCACACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
* ** ** * *
11824110 CCCGCATGA-CTAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAG
1 CCCGCA-CATCCGAGCACCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
** * * *
11824174 GTTGAAGATGGTGCCCGAGGCTCCCATACATCCAAGCACCAAGGTACCGATAGTGCCCGAGGCT
65 GTTGCCGATGGTGCCCGAGGCTCCCACACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
* * * * ** *
11824238 CCTGCACATTCAAGCACCAAGG-TGCCAATGGTGCTTGAGGCTCCCGTACGACCAAGGGCCTAGG
1 CCCGCACATCCGAGCACCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
* * * ** ** *
11824302 -TACCGATGGTGCCTGAGACTCCCGTACGA-CCAAGGGCCTAGGTTGCCGATGGT-CCCGAGGCT
66 TTGCCGATGGTGCCCGAGGCTCCCACAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCT
** * ** * * * *
11824364 TTCGCACGA-CCAAGGGCCTAGGTTACCGATGGTACCCGAGGCTCCCGCACGACCAGGGGCCTAG
1 CCCGCAC-ATCCGAGCACCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * ** * * ** * *
11824428 GTTGTCGATGGTGCCCAAGGCTCCTGCAGGA-CCAGGGGCCTAGGTTGCCAATGGTGCCCGAGGC
65 GTTGCCGATGGTGCCCGAGGCTCCCACA-CATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGC
11824492 T
128 T
* * * ** * * * *
11824493 CTCGTACAACC-AGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACTAGGGGCTTAG
1 CCCGCACATCCGA-GCACCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* *
11824557 G-TGCTGATGGTGCCTGAGGCTCCC
65 GTTGCCGATGGTGCCCGAGGCTCCC
11824581 GTATGACCAA
Statistics
Matches: 790, Mismatches: 159, Indels: 60
0.78 0.16 0.06
Matches are distributed among these distances:
125 61 0.08
126 151 0.19
127 145 0.18
128 340 0.43
129 93 0.12
ACGTcount: A:0.20, C:0.33, G:0.31, T:0.17
Consensus pattern (128 bp):
CCCGCACATCCGAGCACCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
TTGCCGATGGTGCCCGAGGCTCCCACACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
Found at i:11823969 original size:125 final size:128
Alignment explanation
Indices: 11823616--11824695 Score: 586
Period size: 128 Copynumber: 8.5 Consensus size: 128
11823606 TACATCCGAG
* * * * *
11823616 CCACCAAGGTGCCAATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTC
1 CCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGACCTAGGTTACCGATGGTGCC
** * * ** * * * * * *
11823681 TGAGGCTACCGCAC-ATCCAAGCACC-AAGATGCCGATGGTG-CCAAGACTCTCGCACGAT-GAA
66 CAAGGCTCCCACACGA-CCAAGGGCCTAGGTTACCGATGGTGCCCAAGGCTCCCGCAC-ATCTAA
** * * * * *
11823742 -GGCCTAGGTTACCGATGGTGCTCGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCGATGGTGC
1 CCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGACCTAGGTTACCGATGGTGC
* *
11823806 CCGAGGCTCCCACACGACCAAGGGCCTAGGTTACCGATGGTGTCCAAGGCTCCCGCACATCTAA
65 CCAAGGCTCCCACACGACCAAGGGCCTAGGTTACCGATGGTGCCCAAGGCTCCCGCACATCTAA
* * *
11823870 CCACCAAGGTGCCGATGGTGCCCGAGGCT-CCGCAGGACCAAGGACCTAGG-TGCCGGTGGT-CC
1 CCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGACCTAGGTTACCGATGGTGCC
** ** * * * *
11823932 CAAGGCTTTCACACGACCAAGGGCCTAGGTTGTCGATGGTGCCCGAGGCTCCCGTATGA-CCAGA
66 CAAGGCTCCCACACGACCAAGGGCCTAGGTTACCGATGGTGCCCAAGGCTCCCGCA-CATCTA-A
** * * * * * *
11823996 -GGCCTAGGTTGCCGGTGGTGCCCAAGGCTCCCGCACGACCAAGGGCCTATGTTGCCGATGGTGC
1 CCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGACCTAGGTTACCGATGGTGC
* ** * ** * * * *
11824060 CCGAGGCTCCCGTAC-ATCTAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCATGA-CTA
65 CCAAGGCTCCCACACGA-CCAAGGGCCTAGGTTACCGATGGTGCCCAAGGCTCCCGCA-CATCTA
11824122 A
128 A
*** * * * *
11824123 GGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGA-AGATGGTG
1 CCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGACCTAGGTT-ACCGATGGTG
* * ** * * * *
11824187 CCCGAGGCTCCCATAC-ATCCAAGCACCAAGG-TACCGATAGTGCCCGAGGCTCCTGCACAT-TC
64 CCCAAGGCTCCCACACGA-CCAAGGGCCTAGGTTACCGATGGTGCCCAAGGCTCCCGCACATCT-
11824249 AA
127 AA
* * ** * *
11824251 GCACCAAGGTGCCAATGGTGCTTGAGGCTCCCGTACGACCAAGGGCCTAGG-TACCGATGGTGCC
1 CCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGACCTAGGTTACCGATGGTGCC
** * ** * * ** *
11824315 TGAGACTCCCGTACGACCAAGGGCCTAGGTTGCCGATGGT-CCCGAGGCTTTCGCACGA-CCAA
66 CAAGGCTCCCACACGACCAAGGGCCTAGGTTACCGATGGTGCCCAAGGCTCCCGCAC-ATCTAA
*** * * * * * **
11824377 GGGCCTAGGTTACCGATGGTACCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGTCGATGGTGC
1 CCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGACCTAGGTTACCGATGGTGC
** * * * * * * * * * *
11824442 CCAAGGCTCCTGCAGGACCAGGGGCCTAGGTTGCCAATGGTGCCCGAGGCTCTCGTACAACCAG
65 CCAAGGCTCCCACACGACCAAGGGCCTAGGTTACCGATGGTGCCCAAGGCTCCCGCACATCTAA
*** * * * * * * *
11824506 GGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACTAGGGGCTTAGG-TGCTGATGGTGC
1 CCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGACCTAGGTTACCGATGGTGC
** ** * * ** * * *
11824570 CTGAGGCTCCCGTATGACCAACGGCCTAGGTTGTCGATTGT-CCCGAGGCTCTCGCACGA-CTAA
65 CCAAGGCTCCCACACGACCAAGGGCCTAGGTTACCGATGGTGCCCAAGGCTCCCGCAC-ATCTAA
*** ** * * * * * *
11824633 GGGCCAAGGTTATCGATGGTACCCGAGGCTCCCACACGACCAGGGTCCCAGGTTGCCGATGGT
1 CCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGACCTAGGTTACCGATGGT
11824696 ATACCAGCAC
Statistics
Matches: 779, Mismatches: 147, Indels: 54
0.79 0.15 0.06
Matches are distributed among these distances:
125 63 0.08
126 147 0.19
127 196 0.25
128 283 0.36
129 90 0.12
ACGTcount: A:0.20, C:0.31, G:0.32, T:0.17
Consensus pattern (128 bp):
CCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGACCTAGGTTACCGATGGTGCC
CAAGGCTCCCACACGACCAAGGGCCTAGGTTACCGATGGTGCCCAAGGCTCCCGCACATCTAA
Found at i:11824617 original size:382 final size:379
Alignment explanation
Indices: 11823630--11824626 Score: 1085
Period size: 382 Copynumber: 2.6 Consensus size: 379
11823620 CAAGGTGCCA
* * * * ** *
11823630 ATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCTGAGGCTACCGCAC
1 ATGGTACCCAAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGGCTCCCGCAC
* * * * * * ** *
11823695 ATCCAAGCACCAAGATGCCGATGGTG-CCAAGACTCTCGCACGATGAA-GGCCTAGGTTACCGAT
66 ATCCAAGCACCAAGGTGCCAATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGGTTGCCGAT
* * * *
11823758 GGTGCTCGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCACACGA
131 GGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCAGATGGTGCCCGAGGCTCCCATA-GA
* *
11823823 CCAAGGGCCTAGGTTACCGATGGTGT-CCAAGGCTCCCGCACATCTAACCACCAAGGTGCCGATG
195 CCAA-GGCCTAGGTTACCGAT--TGTCCCGAGGCTCCCGCACATCTAACCACCAAGGTGCCAATG
* * * * **
11823887 GTGCCCGAGGCTCCGCAGGACCAAGGACCTAGGTGCCGGTGGTCCCAAGGCTTTCACACGACCAA
257 GTGCCCGAGGCTCCGCACGACCAAGGACCTAGGTACCGATGGTCCCAAGACTCCCACACGACCAA
* * * *
11823952 GGGCCTAGGTTGTCGATGGTGCCCGAGGCTCCCGTATGACCAGAGGCCTAGGTTGCCG
322 GGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGAGGCCTAGGTTACCG
* * * * *
11824010 GTGGTGCCCAAGGCTCCCGCACGACCAAGGGCCTATGTTGCCGATGGTGCCCGAGGCTCCCGTAC
1 ATGGTACCCAAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGGCTCCCGCAC
* * ** *
11824075 ATCTAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCATGACTAAGGGCCTAGGTTGCCGAT
66 ATCCAAGCACCAAGGTGCCAATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGGTTGCCGAT
* *
11824140 GGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGAAGATGGTGCCCGAGGCTCCCATACAT
131 GGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCAGATGGTGCCCGAGGCTCCCATAGA-
* * * * *
11824205 CCAAGCACCAAGG-TACCGATAGTGCCCGAGGCTCCTGCACAT-TCAAGCACCAAGGTGCCAATG
195 CCAAG-GCCTAGGTTACCGATTGT-CCCGAGGCTCCCGCACATCT-AACCACCAAGGTGCCAATG
** * * ** **
11824268 GTGCTTGAGGCTCCCGTACGACCAAGGGCCTAGGTACCGATGGTGCCTGAGACTCCCGTACGACC
257 GTGCCCGAGGCT-CCGCACGACCAAGGACCTAGGTACCGATGGT-CCCAAGACTCCCACACGACC
**
11824333 AAGGGCCTAGGTTGCCGATGGT-CCCGAGGCTTTCGCACGACCA-AGGGCCTAGGTTACCG
320 AAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGA-GGCCTAGGTTACCG
* * * *
11824392 ATGGTACCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGTCGATGGTGCCCAAGGCTCCTGCAG
1 ATGGTACCCAAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGGCTCCCGCA-
* * ** * * * *
11824457 GA-CCAGGGGCCTAGGTTGCCAATGGTGCCCGAGGCTCTCGTACAACCAGGGGCCTAGGTTGCCG
65 CATCCAAGCACCAAGG-TGCCAATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGGTTGCCG
* * * * *
11824521 ATGGTGCCCGAGGCTCCCGCACGACTAGGGGCTTAGG-TGCTGATGGTGCCTGAGGCTCCCGTAT
129 ATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCAGATGGTGCCCGAGGCTCCCATA-
** *
11824585 GACCAACGGCCTAGGTTGTCGATTGTCCCGAGGCTCTCGCAC
193 GACCAA-GGCCTAGGTTACCGATTGTCCCGAGGCTCCCGCAC
11824627 GACTAAGGGC
Statistics
Matches: 516, Mismatches: 86, Indels: 28
0.82 0.14 0.04
Matches are distributed among these distances:
379 2 0.00
380 82 0.16
381 67 0.13
382 245 0.47
383 120 0.23
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.17
Consensus pattern (379 bp):
ATGGTACCCAAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGGCTCCCGCAC
ATCCAAGCACCAAGGTGCCAATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGGTTGCCGAT
GGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCAGATGGTGCCCGAGGCTCCCATAGAC
CAAGGCCTAGGTTACCGATTGTCCCGAGGCTCCCGCACATCTAACCACCAAGGTGCCAATGGTGC
CCGAGGCTCCGCACGACCAAGGACCTAGGTACCGATGGTCCCAAGACTCCCACACGACCAAGGGC
CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGAGGCCTAGGTTACCG
Found at i:11824618 original size:42 final size:43
Alignment explanation
Indices: 11823625--11824695 Score: 1005
Period size: 43 Copynumber: 25.2 Consensus size: 43
11823615 GCCACCAAGG
* *
11823625 TGCCAATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * ** * *
11823668 TGCCGATGGTGTCTGAGGCTACCGCAC-ATCCAAGCACC-AAGA
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * * **
11823710 TGCCGATGGTG-CCAAGACTCTCGCACGATGAA-GGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
11823751 TACCGATGGTGCTCGAGGCTCCCGCACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
11823794 TACCGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *** *
11823837 TACCGATGGTGTCCAAGGCTCCCGCAC-ATCTAACCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* *
11823879 TGCCGATGGTGCCCGAGGCT-CCGCAGGACCAAGGACCTAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * ** *
11823920 TGCCGGTGGT-CCCAAGGCTTTCACACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
11823962 TGTCGATGGTGCCCGAGGCTCCCGTATGACC-AGAGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG-GGCCTAGGT
* * *
11824005 TGCCGGTGGTGCCCAAGGCTCCCGCACGACCAAGGGCCTATGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * ** *
11824048 TGCCGATGGTGCCCGAGGCTCCCGTAC-ATCTAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* *
11824090 TGCCGATGGTGCCCGAGGCTCCCGCATGACTAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
*
11824133 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
** ** ** *
11824176 TGAAGATGGTGCCCGAGGCTCCCATAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * * * ** *
11824218 TACCGATAGTGCCCGAGGCTCCTGCAC-ATTCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* ** *
11824260 TGCCAATGGTGCTTGAGGCTCCCGTACGACCAAGGGCCTAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
11824302 TACCGATGGTGCCTGAGACTCCCGTACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
**
11824345 TGCCGATGGT-CCCGAGGCTTTCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
11824387 TACCGATGGTACCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
11824430 TGTCGATGGTGCCCAAGGCTCCTGCAGGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
11824473 TGCCAATGGTGCCCGAGGCTCTCGTACAACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
11824516 TGCCGATGGTGCCCGAGGCTCCCGCACGACTAGGGGCTTAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
11824558 TGCTGATGGTGCCTGAGGCTCCCGTATGACCAACGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
11824601 TGTCGATTGT-CCCGAGGCTCTCGCACGACTAAGGGCCAAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
** * * *
11824643 TATCGATGGTACCCGAGGCTCCCACACGACC-AGGGTCCCAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG-CCTAGGT
11824686 TGCCGATGGT
1 TGCCGATGGT
11824696 ATACCAGCAC
Statistics
Matches: 836, Mismatches: 170, Indels: 44
0.80 0.16 0.04
Matches are distributed among these distances:
40 10 0.01
41 64 0.08
42 303 0.36
43 457 0.55
44 2 0.00
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.17
Consensus pattern (43 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
Found at i:11824686 original size:85 final size:85
Alignment explanation
Indices: 11823630--11824695 Score: 935
Period size: 85 Copynumber: 12.6 Consensus size: 85
11823620 CAAGGTGCCA
* * * *
11823630 ATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCTGAGGCTACCGCAC
1 ATGGTGCCCGAGGCTCCCGCACGACC-AGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
** * * *
11823695 -ATCCAAGCACC-AAGATGCCG
65 GA-CCAAGGGCCTAGGTTACCG
* * * ** * * *
11823715 ATGGTG-CCAAGACTCTCGCACGATGAAGGCCTAGGTTACCGATGGTGCTCGAGGCTCCCGCACG
1 ATGGTGCCCGAGGCTCCCGCACGACCAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACG
*
11823779 ACCAGGGGCCTAGGTTACCG
66 ACCAAGGGCCTAGGTTACCG
* * * *
11823799 ATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTACCGATGGTGTCCAAGGCTCCCGCAC
1 ATGGTGCCCGAGGCTCCCGCACGACC-AGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
* *** * *
11823864 -ATCTAACCACCAAGG-TGCCG
65 GA-CCAAGGGCCTAGGTTACCG
* * * * ** *
11823884 ATGGTGCCCGAGGCT-CCGCAGGACCAAGGACCTAGG-TGCCGGTGGT-CCCAAGGCTTTCACAC
1 ATGGTGCCCGAGGCTCCCGCACGACC-AGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
**
11823946 GACCAAGGGCCTAGGTTGTCG
65 GACCAAGGGCCTAGGTTACCG
* * * *
11823967 ATGGTGCCCGAGGCTCCCGTATGACCAGAGGCCTAGGTTGCCGGTGGTGCCCAAGGCTCCCGCAC
1 ATGGTGCCCGAGGCTCCCGCACGACCAG-GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
* *
11824032 GACCAAGGGCCTATGTTGCCG
65 GACCAAGGGCCTAGGTTACCG
* * ** *
11824053 ATGGTGCCCGAGGCTCCCGTAC-ATCTAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCA
1 ATGGTGCCCGAGGCTCCCGCACGA-C-CAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA
* * *
11824116 TGACTAAGGGCCTAGGTTGCCG
64 CGACCAAGGGCCTAGGTTACCG
** **
11824138 ATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGAAGATGGTGCCCGAGGCTCCCATAC
1 ATGGTGCCCGAGGCTCCCGCACGACCA-GGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
** *
11824203 -ATCCAAGCACCAAGG-TACCG
65 GA-CCAAGGGCCTAGGTTACCG
* * * ** * * ** *
11824223 ATAGTGCCCGAGGCTCCTGCAC-ATTCAAGCACCAAGG-TGCCAATGGTGCTTGAGGCTCCCGTA
1 ATGGTGCCCGAGGCTCCCGCACGA--CCAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA
11824286 CGACCAAGGGCCTAGG-TACCG
64 CGACCAAGGGCCTAGGTTACCG
* * * **
11824307 ATGGTGCCTGAGACTCCCGTACGACCAAGGGCCTAGGTTGCCGATGGT-CCCGAGGCTTTCGCAC
1 ATGGTGCCCGAGGCTCCCGCACGACC-AGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
11824371 GACCAAGGGCCTAGGTTACCG
65 GACCAAGGGCCTAGGTTACCG
* * * * *
11824392 ATGGTACCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGTCGATGGTGCCCAAGGCTCCTGCAG
1 ATGGTGCCCGAGGCTCCCGCACGACCA-GGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
* * *
11824457 GACCAGGGGCCTAGGTTGCCA
65 GACCAAGGGCCTAGGTTACCG
* * *
11824478 ATGGTGCCCGAGGCTCTCGTACAACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
1 ATGGTGCCCGAGGCTCCCGCACGACCA-GGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
* * * * *
11824543 GACTAGGGGCTTAGG-TGCTG
65 GACCAAGGGCCTAGGTTACCG
* * * * * * *
11824563 ATGGTGCCTGAGGCTCCCGTATGACCAACGGCCTAGGTTGTCGATTGT-CCCGAGGCTCTCGCAC
1 ATGGTGCCCGAGGCTCCCGCACGACC-AGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
* * *
11824627 GACTAAGGGCCAAGGTTATCG
65 GACCAAGGGCCTAGGTTACCG
* * *
11824648 ATGGTACCCGAGGCTCCCACACGACCAGGGTCCCAGGTTGCCGATGGT
1 ATGGTGCCCGAGGCTCCCGCACGACCAGGG-CCTAGGTTGCCGATGGT
11824696 ATACCAGCAC
Statistics
Matches: 793, Mismatches: 159, Indels: 58
0.79 0.16 0.06
Matches are distributed among these distances:
82 20 0.03
83 69 0.09
84 180 0.23
85 288 0.36
86 234 0.30
87 2 0.00
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.17
Consensus pattern (85 bp):
ATGGTGCCCGAGGCTCCCGCACGACCAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACG
ACCAAGGGCCTAGGTTACCG
Found at i:11825478 original size:85 final size:86
Alignment explanation
Indices: 11825367--11825741 Score: 196
Period size: 85 Copynumber: 4.4 Consensus size: 86
11825357 GGTTTCCTAC
* * * * * *
11825367 GGTGACCGAGGCTCCCACAC-ATCCAAGCACCAAGG-TGCCAATGCTG-CTCGAGGGTTCCGTAC
1 GGTGCCCGAGGCTCTCGCACGATCCAAGCACCAAGGTTGCCAATGCTGTCT-GAGGCTACCGCAC
* *
11825429 ATCCGAGCCACCAAGGTGCCAAT
65 ATCCAAG-CACCAAGATGCCAAT
** * * *
11825452 GGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCTGAGGCTACCGCACA
1 GGTGCCCGAGGCTCTCGCACGATCCAAGCACCAAGGTTGCCAATGCTGTCTGAGGCTACCGCACA
*
11825516 TCCAAGCACCAAGATGCCGAT
66 TCCAAGCACCAAGATGCCAAT
* * * * * * * * *
11825537 GGTGCCCAAGACTCTCGCACGAT-GAAG-GCCTAGGTTACCGATGGTG-CTCGAGGCTCCCGCAC
1 GGTGCCCGAGGCTCTCGCACGATCCAAGCACCAAGGTTGCCAATGCTGTCT-GAGGCTACCGCAC
* ** * * * *
11825599 GA-CCAGGGGCCTAGGTTACCGAT
65 -ATCCAAGCACC-AAGATGCCAAT
* * ** * * * * **
11825622 GGTGCCCGAGGCTCCCACACGA-CCAAGGGCCTAGGTTACCGATGGTGTCCAAGGCT-CCGCACA
1 GGTGCCCGAGGCTCTCGCACGATCCAAGCACCAAGGTTGCCAATGCTGTCTGAGGCTACCGCACA
* * * *
11825685 TCTAACCACCAAGGTGCCGAT
66 TCCAAGCACCAAGATGCCAAT
* * * *
11825706 GGTGCCCGAGGCTCCCGCAGGA-CCAAGGACCTAGGT
1 GGTGCCCGAGGCTCTCGCACGATCCAAGCACCAAGGT
11825742 GCCGGTGGTC
Statistics
Matches: 236, Mismatches: 43, Indels: 23
0.78 0.14 0.08
Matches are distributed among these distances:
83 2 0.01
84 78 0.33
85 103 0.44
86 50 0.21
87 3 0.01
ACGTcount: A:0.22, C:0.33, G:0.30, T:0.16
Consensus pattern (86 bp):
GGTGCCCGAGGCTCTCGCACGATCCAAGCACCAAGGTTGCCAATGCTGTCTGAGGCTACCGCACA
TCCAAGCACCAAGATGCCAAT
Found at i:11825498 original size:43 final size:43
Alignment explanation
Indices: 11825445--11826897 Score: 1183
Period size: 43 Copynumber: 34.2 Consensus size: 43
11825435 GCCACCAAGG
* *
11825445 TGCCAATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * ** * *
11825488 TGCCGATGGTGTCTGAGGCTACCGCAC-ATCCAAGCACC-AAGA
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * * **
11825530 TGCCGATGGTGCCCAAGACTCTCGCACGATGAA-GGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
11825572 TACCGATGGTGCTCGAGGCTCCCGCACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
11825615 TACCGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *** *
11825658 TACCGATGGTGTCCAAGGCT-CCGCAC-ATCTAACCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* *
11825699 TGCCGATGGTGCCCGAGGCTCCCGCAGGACCAAGGACCTAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * ** *
11825741 TGCCGGTGGT-CCCAAGGCTTTCACACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
11825783 TGTCGATGGTGCCCGAGGCTCCCGTATGACC-AGAGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG-GGCCTAGGT
* * *
11825826 TGCCGGTGGTGCCCAAGGCTCCCGCACGACCAAGGGCCTATGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * ** *
11825869 TGCCGATGGTGCCCGAGGCTCCCGTAC-ATCTAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * *
11825911 TGCCGATGGTGCCCGAGGCTCCCGTATGACTAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
*
11825954 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
** ** ** *
11825997 TGAAGATGGTGCCCGAGGCTCCCATAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * * * ** *
11826039 TACCGATAGTGCCCGAGGCTCCTGCAC-ATTCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* ** *
11826081 TGCCAATGGTGCTTGAGGCTCCCGTACGACCAAGGGCCTA-G-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
11826122 TACCGATGGTGCCTGAGACTCCCGTACGACCAAGGGGCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
**
11826165 TGCCGATGGT-CCCGAGGCTTTCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
11826207 TACCGATGGTACCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
11826250 TGTCGATGGTGCCCAAGGCTCCTGCAGGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
11826293 TGCCAATGGTGCCCGAGGCTCTCGTACAACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
11826336 TGCCGATGGTGCCCGAGGCTCCCGCACGACTAGGGGCTTAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
11826378 TGCTGATGGTGCCTGAGGCTCCCGTACGACCAACGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
11826421 TGTCGATTGT-CCCGAGGCTCTCGCACGACTAAGGGCCAAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
** * * *
11826463 TATCGATGGTACCCGAGGCTCCCACACGACC-AGGGTCCCAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG-CCTAGGT
* * *
11826506 TGCCGATGGTACCCGAAGCTCCCAG-ACGACCAAAGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCC-GCACGACCAAGGGCCTAGGT
** *
11826549 TGCCGATGGTGGTCGAGGCTCCCGTACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* ** *
11826592 TGCCGATGGCG-CCGAGGCTCTCC-CAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTC-CCGCACGA-CCAAGGGCCTAGGT
* * ** *
11826633 TGCCGGTGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
** * * * *
11826675 TGTTGATGGTGCCCGAGGCTCCCACACAACCAATGGCCTAGTT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * ** * *
11826718 TACCGATGGTGTCCGAGGCTCCCGCAC-ATCTGAGGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-GCCTAGGT
* * * * *
11826761 TGCCGATGCTGCTCGAGGCTCCCGCAC-ATCCGA-GGCATCAAGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCT-AGGT
* * * ** *
11826804 TGCCGATGCTGCTCGAGGCTCCCGCAC-ATCCGAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
** * * * * * *
11826846 TGCCGATACTGCTCGAAGCTCTCGCACCACCAACGTCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
11826889 TGCCGATGG
1 TGCCGATGG
11826898 CGTCCAAGGC
Statistics
Matches: 1137, Mismatches: 235, Indels: 76
0.79 0.16 0.05
Matches are distributed among these distances:
41 94 0.08
42 420 0.37
43 613 0.54
44 10 0.01
ACGTcount: A:0.20, C:0.32, G:0.31, T:0.17
Consensus pattern (43 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
Found at i:11825527 original size:128 final size:128
Alignment explanation
Indices: 11825353--11826938 Score: 840
Period size: 128 Copynumber: 12.4 Consensus size: 128
11825343 CATCCAACGT
* * * * * * *
11825353 CCTAGGTTTCCTACGGTGACCGAGGCTCCCACACATCCAAGCACCAAGGTGCCAATGCTGCTCGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCACACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
* * * *
11825418 GGGTTCCGTACATCCGAGCCACCAAGG-TGCCAATGGTGCCCGAGGCTCTCGCACGACCAAGGG
66 GGGCTCCGCACATCCGAG-CACCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * *
11825481 CCTAGGTTGCCGATGGTGTCTGAGGCTACCGCACATCCAAGCACCAAGATGCCGATGGTGCCC-A
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCACACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
* * * * * * *
11825545 AGACTCTCGCACGAT--GAAG-GCCTAGGTTACCGATGGTGCTCGAGGCTCCCGCACGACCAGGG
66 GGGCTC-CGCAC-ATCCG-AGCACCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
11825607 G
128 G
* ** * * *
11825608 CCTAGGTTACCGATGGTGCCCGAGGCTCCCACACGA-CCAAGGGCCTAGGTTACCGATGGTGTCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCACAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCC
* ** * * *
11825672 -AAGGCTCCGCACATCTAACCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCAGGACCAAGGA
64 GAGGGCTCCGCACATCCGAGCACCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * ** ** * *
11825735 CCTAGG-TGCCGGTGGT-CCCAAGGCTTTCACACGA-CCAAGGGCCTAGGTTGTCGATGGTGCCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCACAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCC
** * * * *
11825797 GA-GGCTCC-CGTATGACCAGAG-GCCTAGGTTGCCGGTGGTGCCCAAGGCTCCCGCACGACCAA
64 GAGGGCTCCGCACAT--CC-GAGCACCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
11825859 GGG
126 GGG
* ** *
11825862 CCTATGTTGCCGATGGTGCCCGAGGCTCCCGTACATCTAAGCACCAAGGTGCCGATGGTGCCCGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCACACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
** ** ** * *
11825927 -GGCTCC-CGTATGACTAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
66 GGGCTCCGCACAT--CCGAGCACCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * * *
11825990 CCTAGGTTGAAGATGGTGCCCGAGGCTCCCATACATCCAAGCACCAAGGTACCGATAGTGCCCGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCACACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
* * * ** *
11826055 -GGCTCCTGCACATTCAAGCACCAAGG-TGCCAATGGTGCTTGAGGCTCCCGTACGACCAAGGG
66 GGGCTCC-GCACATCCGAGCACCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * ** *** *
11826117 CCTA-G-TACCGATGGTGCCTGAGACTCCCGTACGA-CCAAGGGGCTAGGTTGCCGATGGT-CCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCACAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCC
* * ** * * *
11826178 GA-GGCTTTCGCACGA-CCAAGGGCCTAGGTTACCGATGGTACCCGAGGCTCCCGCACGACCAAG
64 GAGGGC-TCCGCAC-ATCCGAGCACCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
11826241 GG
127 GG
* * ** * * ** * *
11826243 CCTAGGTTGTCGATGGTGCCCAAGGCTCCTGCAGGA-CCAGGGGCCTAGGTTGCCAATGGTGCCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCACA-CATCCAAGCACCAAGG-TGCCGATGGTGCCC
* * ** * * *
11826307 GA-GGCTCTCGTACAACC-AGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACTAGG
64 GAGGGCTC-CGCACATCCGA-GCACCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
11826370 GG
127 GG
* * * ** * * * *
11826372 CTTAGG-TGCTGATGGTGCCTGAGGCTCCCGTACGA-CCAA-CGGCCTAGGTTGTCGATTGT-CC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCACAC-ATCCAAGC-ACCAAGG-TGCCGATGGTGCC
** ** ** * *
11826433 CGA-GGCTCTCGCACGA-CTAAGGGCCAAGGTTATCGATGGTACCCGAGGCTCCCACACGACC-A
63 CGAGGGCTC-CGCAC-ATCCGAGCACCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
11826495 GGG
126 GGG
* * * * * * *
11826498 TCCCAGGTTGCCGATGGTACCCGAAGCTCCCAGACGA-CCAAAG-GCCTAGGTTGCCGATGGTGG
1 -CCTAGGTTGCCGATGGTGCCCGAGGCTCCCACAC-ATCC-AAGCACCAAGG-TGCCGATGGTGC
* * * ** * *
11826561 TCGA-GGCTCCCGTACGA-CCAAGGGCCTAGGTTGCCGATGGCG-CCGAGGCTCTCC-CAC-ATC
62 CCGAGGGCT-CCGCAC-ATCCGAGCACCAAGGTTGCCGATGGTGCCCGAGGCTC-CCGCACGA-C
**
11826621 CAAGCA
123 CAAGGG
* * * * **
11826627 CCAAGG-TGCCGGTGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGTTGATGGTGCCCGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCACACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
* * * * * * * * **
11826691 -GGCTCCCACACAACCAATG-GCCTAGTTTACCGATGGTGTCCGAGGCTCCCGCAC-ATCTGAGG
66 GGGCT-CCGCACATCCGA-GCACCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG
*
11826753 CA
128 -G
* * * * * * * * *
11826755 CCAAGG-TGCCGATGCTGCTCGAGGCTCCCGCACATCCGAGGCATCAAGTTGCCGATGCTGCTCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCACACATCC-AAGCACCAAGGTGCCGATGGTGCCCG
** * * * * * *
11826819 A-GGCTCCCGCACATCCGAGCACCAAGG-TGCCGATACTGCTCGAAGCTCTCGCACCACCAACGT
65 AGGGCT-CCGCACATCCGAGCACCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * * * *
11826882 CCTAGGTTGCCGATGGCGTCCAAGGCT-CCAGTACGTCCAAGCAGCAATGTGCCGATG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCA-CACATCCAAGCACCAAGGTGCCGATG
11826939 CTCCAGCACC
Statistics
Matches: 1160, Mismatches: 241, Indels: 115
0.77 0.16 0.08
Matches are distributed among these distances:
124 3 0.00
125 98 0.08
126 119 0.10
127 317 0.27
128 459 0.40
129 160 0.14
130 4 0.00
ACGTcount: A:0.20, C:0.32, G:0.30, T:0.17
Consensus pattern (128 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCACACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
GGGCTCCGCACATCCGAGCACCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:11825993 original size:339 final size:338
Alignment explanation
Indices: 11825450--11826659 Score: 1137
Period size: 339 Copynumber: 3.6 Consensus size: 338
11825440 CAAGGTGCCA
* * * ** *
11825450 ATGGTGCCCGAGGCTCTCGCACGACCA-AGGGCCTAGGTTGCCGATGGTGTCTGAGGCTACCGCA
1 ATGGTGCCCGAGGCTCCCGTACGACCAGA-GGCCTAGGTTGCCGATGGT-CCCAAGGCTCCCGCA
** * * * * * * ** * * *
11825514 C-ATCCAAGCACC-AAGATGCCGATGGTGCCCAAGACTCTCGCACGATGAAG-GCCTAGGTTACC
64 CGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGCACCAAGGTTGCC
* * *
11825576 GATGGTGCTCGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCACA
128 GATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA
* * * *
11825641 CGACCAAGGGCCTAGGTTACCGATGGTGTCCAAGGCTCCGCACATCTAACCACCAAGGTGCCGAT
193 CGACCAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCGCACATCTAAGCACCAAGGTGCCGAT
* * * *
11825706 GGTGCCCGAGGCTCCCGCAGGACCAAGGACCTAGGTGCCGGTGGTCCCAAGGCTTTCACACGACC
258 GGTGCCCGAGGCTCCCGCA-GACCAAGGACCTAGGTGCCGATGGTCCCGAGGCTCTCGCACGACC
*
11825771 AAGGGCCTAGGTTGTCG
322 AAGGGCCTAGGTTATCG
* *
11825788 ATGGTGCCCGAGGCTCCCGTATGACCAGAGGCCTAGGTTGCCGGTGGTGCCCAAGGCTCCCGCAC
1 ATGGTGCCCGAGGCTCCCGTACGACCAGAGGCCTAGGTTGCCGATGGT-CCCAAGGCTCCCGCAC
* *
11825853 GACCAAGGGCCTATGTTGCCGATGGTGCCCGAGGCTCCCGTAC-ATCTAAGCACCAAGG-TGCCG
65 GACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGA-CCAAGCACCAAGGTTGCCG
* * * *
11825916 ATGGTGCCCGAGGCTCCCGTATGACTAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
129 ATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
* * *
11825981 GACCAGGGGCCTAGGTTGA-AGATGGTGCCCGAGGCTCC-CATACATCCAAGCACCAAGGTACCG
194 GACCAGGGGCCTAGGTT-ACCGATGGTGCCCGAGGCTCCGC--ACATCTAAGCACCAAGGTGCCG
* * * * * * * ** * *
11826044 ATAGTGCCCGAGGCTCCTGCACATTCAAGCACCAAGGTGCCAATGGTGCTTGAGGCTCCCGTACG
256 ATGGTGCCCGAGGCTCCCGCAGA-CCAAGGACCTAGGTGCCGATGGT-CCCGAGGCTCTCGCACG
*
11826109 ACCAAGGGCCTA-G-TACCG
319 ACCAAGGGCCTAGGTTATCG
* * * * **
11826127 ATGGTGCCTGAGACTCCCGTACGACCA-AGGGGCTAGGTTGCCGATGGTCCCGAGGCTTTCGCAC
1 ATGGTGCCCGAGGCTCCCGTACGACCAGA-GGCCTAGGTTGCCGATGGTCCCAAGGCTCCCGCAC
* * * ** * *
11826191 GACCAAGGGCCTAGGTTACCGATGGTACCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGTCGA
65 GACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGCACCAAGGTTGCCGA
* * * * * * *
11826256 TGGTGCCCAAGGCTCCTGCAGGACCAGGGGCCTAGGTTGCCAATGGTGCCCGAGGCTCTCGTACA
130 TGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACG
* * ** ** *
11826321 ACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CTAGGGGCTTAGGTGCTGAT
195 ACCAGGGGCCTAGGTTACCGATGGTGCCCGAGGCT-CCGCAC-ATCTAAGCACCAAGGTGCCGAT
* * * *
11826385 GGTGCCTGAGGCTCCCGTACGACCAACGG-CCTAGGTTGTCGATTGTCCCGAGGCTCTCGCACGA
258 GGTGCCCGAGGCTCCCGCA-GACCAA-GGACCTAGG-TGCCGATGGTCCCGAGGCTCTCGCACGA
* *
11826449 CTAAGGGCCAAGGTTATCG
320 CCAAGGGCCTAGGTTATCG
* ** *
11826468 ATGGTACCCGAGGCTCCCACACGACCAG-GGTCCCAGGTTGCCGATGGTACCCGAA-GCTCCCAG
1 ATGGTGCCCGAGGCTCCCGTACGACCAGAGG-CCTAGGTTGCCGATGGT-CCC-AAGGCTCCC-G
* ** ** *
11826531 -ACGACCAAAGGCCTAGGTTGCCGATGGTGGTCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGC
62 CACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGCACCAAGGTTGC
* * ** * * *
11826595 CGATGGCG-CCGAGGCTCTCC-CAC-ATCCAAGCACCAAGG-TGCCGGTGGTGCTCGAGGCTCCC
127 CGATGGTGCCCGAGGCTC-CCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
11826656 GCAC
190 GCAC
11826660 ATCCAAGCAC
Statistics
Matches: 706, Mismatches: 137, Indels: 56
0.79 0.15 0.06
Matches are distributed among these distances:
338 126 0.18
339 322 0.46
340 101 0.14
341 83 0.12
342 72 0.10
343 2 0.00
ACGTcount: A:0.20, C:0.32, G:0.32, T:0.17
Consensus pattern (338 bp):
ATGGTGCCCGAGGCTCCCGTACGACCAGAGGCCTAGGTTGCCGATGGTCCCAAGGCTCCCGCACG
ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGCACCAAGGTTGCCGAT
GGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA
CCAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCGCACATCTAAGCACCAAGGTGCCGATGGT
GCCCGAGGCTCCCGCAGACCAAGGACCTAGGTGCCGATGGTCCCGAGGCTCTCGCACGACCAAGG
GCCTAGGTTATCG
Found at i:11826897 original size:171 final size:169
Alignment explanation
Indices: 11826517--11826910 Score: 429
Period size: 171 Copynumber: 2.3 Consensus size: 169
11826507 GCCGATGGTA
* * * *
11826517 CCCGAAGCTCCCAGACGACCAAAGGCCTAGGTTGCCGATGGTGGT-CGAGGCTCCCGTACGACCA
1 CCCGAAGCTCCCACACAACCAACGGCCTAGGTTGCCGATGGT-GTCCGAGGCTCCCGCACGACCA
* * * *
11826581 AGGGCCTAGGTTGCCGATGGCGCCGAGGCTCTCCCACATCCAAGCACCAAGGTGCCGGTGGTGCT
65 AGGACCAAGGTTGCCGATGGCGCCGAGGCTCTCCCACATCCAAGCACCAAGGTGCCGATGCTGCT
** **
11826646 CGAGGCTCCCGCACATCCAAGCACCAAGGTGTTGATGGTG
130 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATACTG
* * * * **
11826686 CCCGAGGCTCCCACACAACCAATGGCCTAGTTTACCGATGGTGTCCGAGGCTCCCGCAC-ATCTG
1 CCCGAAGCTCCCACACAACCAACGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCA
* * *
11826750 AGGCACCAAGG-TGCCGAT-GCTGCTCGAGGCTC-CCGCACATCCGAGGCATCAAGTTGCCGATG
65 AGG-ACCAAGGTTGCCGATGGC-GC-CGAGGCTCTCC-CACATCC-AAGCACCAAGGTGCCGATG
*
11826812 CTGCTCGAGGCTCCCGCACATCCGAGCACCAAGGTGCCGATACTG
125 CTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATACTG
* * * * * * *
11826857 CTCGAAGCTCTCGCACCACCAACGTCCTAGGTTGCCGATGGCGTCCAAGGCTCC
1 CCCGAAGCTCCCACACAACCAACGGCCTAGGTTGCCGATGGTGTCCGAGGCTCC
11826911 AGTACGTCCA
Statistics
Matches: 186, Mismatches: 32, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
168 5 0.03
169 64 0.34
170 20 0.11
171 97 0.52
ACGTcount: A:0.20, C:0.35, G:0.28, T:0.17
Consensus pattern (169 bp):
CCCGAAGCTCCCACACAACCAACGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAA
GGACCAAGGTTGCCGATGGCGCCGAGGCTCTCCCACATCCAAGCACCAAGGTGCCGATGCTGCTC
GAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATACTG
Found at i:11827114 original size:24 final size:24
Alignment explanation
Indices: 11827087--11827148 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
11827077 TGGCTCACCA
*
11827087 GAGCACCGCCGGGATGGCTT-GCAG
1 GAGCACCGCCGGGATAG-TTCGCAG
* *
11827111 GAGCACAGCCGGGATAGTTCGCCG
1 GAGCACCGCCGGGATAGTTCGCAG
*
11827135 GAGCACCACCGGGA
1 GAGCACCGCCGGGA
11827149 ACTTAACCGG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
23 2 0.06
24 30 0.94
ACGTcount: A:0.21, C:0.31, G:0.39, T:0.10
Consensus pattern (24 bp):
GAGCACCGCCGGGATAGTTCGCAG
Found at i:11834469 original size:32 final size:32
Alignment explanation
Indices: 11834426--11834502 Score: 100
Period size: 32 Copynumber: 2.4 Consensus size: 32
11834416 CAAAATAAAT
**
11834426 TATGAAAAGTTACGAATGTGAAGAGACTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
* **
11834458 TATGAAGAGTTAATAATGCAAAGAGACTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
*
11834490 GATGAAAAGTTAC
1 TATGAAAAGTTAC
11834503 ACACATGCAT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.45, C:0.06, G:0.23, T:0.25
Consensus pattern (32 bp):
TATGAAAAGTTACGAATGCAAAGAGACTTGAA
Found at i:11838985 original size:32 final size:32
Alignment explanation
Indices: 11838942--11839018 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
11838932 CAAAATAAAT
** *
11838942 TATGAAAAGTTACGAATGTGAAGAGGCTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
* **
11838974 TATGAAGAGTTAATAATGCAAAGAGACTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
*
11839006 GATGAAAAGTTAC
1 TATGAAAAGTTAC
11839019 ACACATGCAT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.44, C:0.06, G:0.25, T:0.25
Consensus pattern (32 bp):
TATGAAAAGTTACGAATGCAAAGAGACTTGAA
Found at i:11843240 original size:58 final size:59
Alignment explanation
Indices: 11843149--11843269 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
11843139 GGGAGGGACA
* *
11843149 GGGACGATTCATTCATTGTTGGGTACCGGACATGCAACGGTATCCGAATTCTACC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATTCTACCTTTT
* *
11843207 GGGACGATTCATTCATTATTGGGTACCGAACATGTAATGGTATCCGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATTCTACCTTTT
11843266 GGGA
1 GGGA
11843270 TTGGGGAGGG
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 51 0.88
59 7 0.12
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATTCTACCTTTT
Found at i:11843949 original size:5 final size:5
Alignment explanation
Indices: 11843941--11843971 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
11843931 GTATGGTATG
*
11843941 ATGGC ATGGC ATGGC ATGGC ACGGC ATGGC A
1 ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC A
11843972 GAAAATTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.23, C:0.23, G:0.39, T:0.16
Consensus pattern (5 bp):
ATGGC
Found at i:11854631 original size:43 final size:42
Alignment explanation
Indices: 11854554--11854635 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 42
11854544 AGGCTCCCAC
*
11854554 ACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCTCCTGT
1 ACATCCAAGCACCAAGGTGCCAATGCTGCCCGAGGCTCCTGT
* *
11854596 ACATCCGAGGCACCAAGGTGCCGATAG-TGCCCGAGGCTCC
1 ACATCC-AAGCACCAAGGTGCCAAT-GCTGCCCGAGGCTCC
11854636 CACACGACCA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
42 6 0.17
43 28 0.80
44 1 0.03
ACGTcount: A:0.23, C:0.34, G:0.27, T:0.16
Consensus pattern (42 bp):
ACATCCAAGCACCAAGGTGCCAATGCTGCCCGAGGCTCCTGT
Found at i:11854669 original size:43 final size:43
Alignment explanation
Indices: 11854614--11855437 Score: 759
Period size: 43 Copynumber: 19.4 Consensus size: 43
11854604 GGCACCAAGG
* *
11854614 TGCCGATAGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
11854657 TACTGATGGTGCCCGAGGCTCCCAG-ACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCC-GCACGACCAAGGGCCTAGGT
* * ** *
11854700 TGTCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* *
11854742 TGCCGATGGTGCCCGAGGCTCTCGCACGACCAA-GGACTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
** * *
11854784 TGCCGATGGTGCTTGAGGCTCCCGCATGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
11854827 TGCCGATTGTGCCCGAGGCTCTCACACGACCAAGGGCCTAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
11854869 TGCCGATCGT-CCCGAGGCTCTCGCACGACGAAGGACCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
11854911 TTCCGATGGTGGCCGAGGCTCCCGTACGACC-AGAGACCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG-GGCCTAGGT
* * * * *
11854954 TACTGATGGTGCCTGAGGCT-CCGCATGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* ** ** *
11854996 TGTCGATGGTGCCCGAGGCTCCCATAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * *
11855038 TGCCGATGGTACCCGAGGCTCCCACAGGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* ** *
11855081 TGTCGATGGTGTTCAAGGCTCCCGCAC-ATCCAA--GCACTAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC-CT-AGGT
** *
11855123 TGCCGATGGTGCCCGAGGCTATCGCACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * * * * *
11855166 TGCCGATGATTCTCGAGGCTACCACACGACTAGGGGCCTAAGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
*** * * ** *
11855209 TTTTGATGGTACCCGAGGCTCCCGCAC-ATCTAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * *
11855251 TGCCAATGGTGCTCGAGGCTCCCGCACGACCAACGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
*
11855294 TACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
11855337 TACCGATGGT-CCCGAGGCTCTCGTACGACCAAGGGCCTAAGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
11855379 TACTGATGGTGCCC-ATGGCTCCCGTACGACC-AGTGGCCTAGGT
1 TGCCGATGGTGCCCGA-GGCTCCCGCACGACCAAG-GGCCTAGGT
11855422 TGCCGATGGTGCCCGA
1 TGCCGATGGTGCCCGA
11855438 TGTAATATCC
Statistics
Matches: 629, Mismatches: 124, Indels: 55
0.78 0.15 0.07
Matches are distributed among these distances:
41 34 0.05
42 244 0.39
43 348 0.55
44 3 0.00
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (43 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
Found at i:11854771 original size:85 final size:85
Alignment explanation
Indices: 11854614--11855437 Score: 701
Period size: 85 Copynumber: 9.7 Consensus size: 85
11854604 GGCACCAAGG
* * * *
11854614 TGCCGATAGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTACTGATGGTGCCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
11854679 CAG-ACGACCAAGGGCCTAGGT
65 C-GCACGACCAAGGGCCTAGGT
* * ** * *
11854700 TGTCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCT
1 TGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
*
11854764 CGCACGACCAA-GGACTAGGT
65 CGCACGACCAAGGGCCTAGGT
** * * * *
11854784 TGCCGATGGTGCTTGAGGCTCCCGCATGACCAGGGGCCTAGGTTGCCGATTGTGCCCGAGGCTCT
1 TGCCGATGGTGCCCGAGGCTCCCGCA-CACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
*
11854849 CACACGACCAAGGGCCTAGG-
65 CGCACGACCAAGGGCCTAGGT
* * * * * *
11854869 TGCCGATCGT-CCCGAGGCTCTCGCACGACGAAGGACCTAGGTTTCCGATGGTGGCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* *
11854933 CGTACGACC-AGAGACCTAGGT
65 CGCACGACCAAG-GGCCTAGGT
* * * * * *
11854954 TACTGATGGTGCCTGAGGCT-CCGCATGACCAGGGGCCTAGGTTGTCGATGGTGCCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCA-CACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
** ** *
11855018 CATAC-ATCCAAGCACCAAGG-
65 CGCACGA-CCAAGGGCCTAGGT
* * * * ** *
11855038 TGCCGATGGTACCCGAGGCTCCCACAGGACCAAGGGCCTAGGTTGTCGATGGTGTTCAAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCA-CACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
11855103 CGCAC-ATCCAA--GCACTAAGG-
65 CGCACGA-CCAAGGGC-CT-AGGT
** * * * * *
11855123 TGCCGATGGTGCCCGAGGCTATCGCACGACCAGGGGCCTAGGTTGCCGATGATTCTCGAGGCTAC
1 TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* * * *
11855188 CACACGACTAGGGGCCTAAGT
65 CGCACGACCAAGGGCCTAGGT
*** * * ** * * *
11855209 TTTTGATGGTACCCGAGGCTCCCGCACATCTAAGCACCAAGG-TGCCAATGGTGCTCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
*
11855273 CGCACGACCAACGGCCTAGGT
65 CGCACGACCAAGGGCCTAGGT
* * *
11855294 TACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGT-CCCGAGGCTCT
1 TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* *
11855358 CGTACGACCAAGGGCCTAAGT
65 CGCACGACCAAGGGCCTAGGT
* * *
11855379 TACTGATGGTGCCC-ATGGCTCCCGTACGACC-AGTGGCCTAGGTTGCCGATGGTGCCCGA
1 TGCCGATGGTGCCCGA-GGCTCCCGCAC-ACCAAG-GGCCTAGGTTGCCGATGGTGCCCGA
11855438 TGTAATATCC
Statistics
Matches: 591, Mismatches: 121, Indels: 52
0.77 0.16 0.07
Matches are distributed among these distances:
83 3 0.01
84 117 0.20
85 373 0.63
86 96 0.16
87 2 0.00
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (85 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
GCACGACCAAGGGCCTAGGT
Found at i:11854866 original size:170 final size:170
Alignment explanation
Indices: 11854525--11855375 Score: 821
Period size: 170 Copynumber: 5.0 Consensus size: 170
11854515 CCAACGTCCC
* ** * * * *
11854525 AGGTTGTCTATGGTGTCTGAGGCTCCCACACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGC
1 AGGTTGTCGATGGTACCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGC
* * * * * * *
11854590 TCCTGTAC-ATCCGAGGCACCAAGG-TGCCGATAGTGCCCGAGGCTCCCACACGACCAAGGGCCT
66 TCCCGCACGA-CCAAGG-A-CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCT
* * *
11854653 AGGTTACTGATGGTGCCCGAGGCTCCCAGACGACCAAGGGCCT
128 AGGTTGCCGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCT
** *
11854696 AGGTTGTCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGC
1 AGGTTGTCGATGGTACCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGC
* ** *
11854761 TCTCGCACGACCAAGGACTAGGTTGCCGATGGTGCTTGAGGCTCCCGCATGACCAGGGGCCTAGG
66 TCCCGCACGACCAAGGACTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGG
* *
11854826 TTGCCGATTGTGCCCGAGGCTCTCACACGACCAAGGGCCT
131 TTGCCGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCT
* * * * * * *
11854866 AGG-TGCCGATCGT-CCCGAGGCTCTCGCACGA-CGAAGGACCTAGGTTTCCGATGGTGGC-CGA
1 AGGTTGTCGATGGTACCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGT-GCTCGA
* * * * *
11854927 GGCTCCCGTACGACC-AGAGACCTAGGTTACTGATGGTGCCTGAGGCT-CCGCATGACCAGGGGC
63 GGCTCCCGCACGACCAAG-GA-CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGC
* * ** *
11854990 CTAGGTTGTCGATGGTGCCCGAGGCTCCCATAC-ATCCAAGCACCA
126 CTAGGTTGCCGATGGTGCCCGAGGCTCCCACACGA-CCAAGGGCCT
* * * ** * * * *
11855035 AGG-TGCCGATGGTACCCGAGGCTCCCACAGGA-CCAAGGGCCTAGGTTGTCGATGGTGTTCAAG
1 AGGTTGTCGATGGTACCCGAGGCTCCCGCA-CATCCAAGCACCAAGG-TGCCGATGGTGCTCGAG
* **
11855098 GCTCCCGCAC-ATCCAAGCACTAAGG-TGCCGATGGTGCCCGAGGCTATCGCACGACCAGGGGCC
64 GCTCCCGCACGA-CCAAGGACT-AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCC
* * * * * *
11855161 TAGGTTGCCGATGATTCTCGAGGCTACCACACGACTAGGGGCCT
127 TAGGTTGCCGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCT
* * * * *
11855205 AAGTTTTTGATGGTACCCGAGGCTCCCGCACATCTAAGCACCAAGGTGCCAATGGTGCTCGAGGC
1 AGGTTGTCGATGGTACCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGC
* * *
11855270 TCCCGCACGACCAACGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
66 TCCCGCACGACCAA-GGACTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAG
* * **
11855335 GTTACCGATGGT-CCCGAGGCTCTCGTACGACCAAGGGCCT
130 GTTGCCGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCT
11855375 A
1 A
11855376 AGTTACTGAT
Statistics
Matches: 560, Mismatches: 99, Indels: 43
0.80 0.14 0.06
Matches are distributed among these distances:
168 27 0.05
169 125 0.22
170 253 0.45
171 154 0.28
172 1 0.00
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (170 bp):
AGGTTGTCGATGGTACCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGC
TCCCGCACGACCAAGGACTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGG
TTGCCGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCT
Found at i:11856785 original size:46 final size:46
Alignment explanation
Indices: 11856735--11856857 Score: 192
Period size: 46 Copynumber: 2.7 Consensus size: 46
11856725 TTGAGCATCT
* * * *
11856735 GAACTCGTGGAGTTGAGTCCGAGTTCACTTAGGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCAAACGCCC
*
11856781 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCAAACGCCC
*
11856827 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
11856858 AGGGCGAGTT
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCAAACGCCC
Found at i:11863944 original size:46 final size:46
Alignment explanation
Indices: 11863894--11864060 Score: 254
Period size: 46 Copynumber: 3.7 Consensus size: 46
11863884 TGGTTGAGCA
11863894 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
11863940 TCCGAACTCGTTGAGTTGAGTCCGAGTT--CGTA--GAAGC-AATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
11863981 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
11864027 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
11864061 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 7, Indels: 10
0.87 0.06 0.08
Matches are distributed among these distances:
41 32 0.29
42 4 0.04
43 3 0.03
44 3 0.03
45 4 0.04
46 63 0.58
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:11863964 original size:20 final size:20
Alignment explanation
Indices: 11863939--11864005 Score: 64
Period size: 20 Copynumber: 3.3 Consensus size: 20
11863929 GGATGCGAAT
11863939 GTCCGAACTCGTTGAGTTGA
1 GTCCGAACTCGTTGAGTTGA
** * **
11863959 GTCCGAGTTCGTAGAAG-CAA
1 GTCCGAACTCGTTG-AGTTGA
11863979 TGTCCGAACTCGTTGAGTTGA
1 -GTCCGAACTCGTTGAGTTGA
11864000 GTCCGA
1 GTCCGA
11864006 GTTCACTTAT
Statistics
Matches: 34, Mismatches: 10, Indels: 6
0.68 0.20 0.12
Matches are distributed among these distances:
20 20 0.59
21 14 0.41
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (20 bp):
GTCCGAACTCGTTGAGTTGA
Found at i:11864040 original size:87 final size:87
Alignment explanation
Indices: 11863894--11864055 Score: 297
Period size: 87 Copynumber: 1.9 Consensus size: 87
11863884 TGGTTGAGCA
* *
11863894 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTGA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTGA
11863959 GTCCGAGTTCGTAGAAGCAATG
66 GTCCGAGTTCGTAGAAGCAATG
*
11863981 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTGA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTGA
11864046 GTCCGAGTTC
66 GTCCGAGTTC
11864056 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
87 72 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (87 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTGA
GTCCGAGTTCGTAGAAGCAATG
Found at i:11865437 original size:43 final size:42
Alignment explanation
Indices: 11865376--11865511 Score: 157
Period size: 42 Copynumber: 3.2 Consensus size: 42
11865366 GGGCATTACA
**
11865376 CCCGAGGCTCTTGCACGACCAGGGGCCTAGGTTGCCGATGGT
1 CCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGT
*
11865418 GCCCGAGGCTCCCGCACGACTAGGGGCCTAGG-TGCCGATGGT
1 -CCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGT
** * ** * *
11865460 ACCTAAGGCTCCCGCACAACCAACGACCTATGTTGCCGATGGT
1 -CCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGT
11865503 CCCGAGGCT
1 CCCGAGGCT
11865512 GTCGCATGAC
Statistics
Matches: 78, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
42 40 0.51
43 38 0.49
ACGTcount: A:0.18, C:0.34, G:0.32, T:0.17
Consensus pattern (42 bp):
CCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGT
Found at i:11865930 original size:22 final size:23
Alignment explanation
Indices: 11865903--11865947 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
11865893 GGGTATCTAC
*
11865903 AAATCAAATC-TCTAGGATTACA
1 AAATCAAATCTTCTAAGATTACA
*
11865925 AAATCATATCTTCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
11865948 TATCATATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.44, C:0.18, G:0.07, T:0.31
Consensus pattern (23 bp):
AAATCAAATCTTCTAAGATTACA
Found at i:11865951 original size:17 final size:17
Alignment explanation
Indices: 11865929--11865979 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 17
11865919 ATTACAAAAT
11865929 CATATCTTCTAAGATTA
1 CATATCTTCTAAGATTA
*
11865946 CATATCATATCTAAGATTG
1 CATATC-T-TCTAAGATTA
*
11865965 CATATCTTCGAAGAT
1 CATATCTTCTAAGAT
11865980 CATGTTTCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 13 0.43
18 2 0.07
19 15 0.50
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (17 bp):
CATATCTTCTAAGATTA
Found at i:11865952 original size:22 final size:22
Alignment explanation
Indices: 11865900--11865957 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
11865890 AAAGGGTATC
* *
11865900 TACAAATCAAATC-TCTAGGAT
1 TACAAATCATATCTTCTAAGAT
11865921 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
11865944 TACATATCATATCT
1 TACAAATCATATCT
11865958 AAGATTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.09
22 19 0.59
23 10 0.31
ACGTcount: A:0.41, C:0.19, G:0.05, T:0.34
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:11871058 original size:17 final size:17
Alignment explanation
Indices: 11871036--11871088 Score: 61
Period size: 19 Copynumber: 3.0 Consensus size: 17
11871026 ATTACAAAAT
11871036 CATATCTTCTAAGATCA
1 CATATCTTCTAAGATCA
**
11871053 CATATCATATCTAAGATTG
1 CATATC-T-TCTAAGATCA
*
11871072 CATATCTTCGAAGATCA
1 CATATCTTCTAAGATCA
11871089 AGTTTCCATA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
17 13 0.45
18 2 0.07
19 14 0.48
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (17 bp):
CATATCTTCTAAGATCA
Found at i:11871315 original size:43 final size:42
Alignment explanation
Indices: 11871266--11871409 Score: 180
Period size: 43 Copynumber: 3.4 Consensus size: 42
11871256 ACCAATGACA
*
11871266 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGTC
1 CTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAGGG-C
** *
11871309 CTAGGTTACCGATGGTGCCCGAGGCTCCTACACAACCAGGGGC
1 CTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCA-GGGC
* * ** *
11871352 CTAGGTTACTGATAGTGCTTGAGGCTCCCGTACGACCAAGGGC
1 CTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACC-AGGGC
11871395 CTAGGTTACCGATGG
1 CTAGGTTACCGATGG
11871410 CACCGAGGCT
Statistics
Matches: 85, Mismatches: 14, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
43 81 0.95
44 4 0.05
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (42 bp):
CTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAGGGC
Found at i:11871711 original size:43 final size:42
Alignment explanation
Indices: 11871664--11871806 Score: 114
Period size: 42 Copynumber: 3.4 Consensus size: 42
11871654 CCTCAAGTAG
* *
11871664 CATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCCTCGGAAAC
1 CATCAGCACCTTGGTGCCTTGGATGTGCGGGAGCCTCGG-CAC
* * * * *
11871707 CATC-GACAAAC-TAG-GCTCTTGGTTATGCAGGAGCCTCGTGCAC
1 CATCAG-C-ACCTTGGTGC-CTTGGATGTGCGGGAGCCTCG-GCAC
* * *
11871750 CATTAGCACCTTGGTG-CTCGGATGTGCGGAAGCCTCAGGCAC
1 CATCAGCACCTTGGTGCCTTGGATGTGCGGGAGCCTC-GGCAC
11871792 CATCAGCACCTTGGT
1 CATCAGCACCTTGGT
11871807 CGTGCTAGAG
Statistics
Matches: 77, Mismatches: 15, Indels: 17
0.71 0.14 0.16
Matches are distributed among these distances:
42 38 0.49
43 34 0.44
44 5 0.06
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (42 bp):
CATCAGCACCTTGGTGCCTTGGATGTGCGGGAGCCTCGGCAC
Found at i:11871974 original size:43 final size:43
Alignment explanation
Indices: 11871800--11873479 Score: 1423
Period size: 43 Copynumber: 39.5 Consensus size: 43
11871790 ACCATCAGCA
** * * *
11871800 CCTTGGTCGTGCTAGAGCCTCGGGCACCATTGGTAACCTAGGT
1 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
* * * *
11871843 CCTT-GTCGTGTGGGAGCCTCGGGCACTATTGGTAACCTAGGC
1 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
* * * *
11871885 CCTTGATCGTGCGAGAGCCTTGG-CACCATC-GCAACCTAGGC
1 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
* **
11871926 CCTTGGTCGTGCGGGAGCCTCGGATACCATCGGTAACCTAGAA
1 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
* * *
11871969 CCTTGGTCG-GCGGGAGCCTCGGGCACCATCGGCAAACTAGGC
1 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
* * * * * *
11872011 CCTTGGTCGTACCGGAGCCTCGGGCACCATCGG-CACCTTGGT
1 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
** * * * *
11872053 GATTGGTCATGGGGGAGCTTTGGACACCATCGGTAACCTAGGC
1 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
* * * * * *
11872096 CCTTGGAT-ATACGGAAGCCTCAGACACCATCAGTACCCTAGGC
1 CCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
* ** * * *
11872139 CTTTACTCGTACAGGAGCCTCGAACACCATCGGTAACCTAGG-
1 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
* * * *
11872181 TCTCAGGTCGTGCGGGAGCCTCGGGCACCATCGGAAACCTAGGC
1 CCT-TGGTCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
* * * * *
11872225 CCTTGGTCGTGTGGGAGCCTCAGAC-CCATCGG-CACCTTGGT
1 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
* * * *
11872266 GCTTGGAT-GTACGGGAGCCTCGAACACCATCGATAACCTAGGC
1 CCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
* * * * *
11872309 CCTTGGTCGTACGGGAGCCTTGGACACTATCGGCAACATAGGC
1 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
*** * * * *
11872352 CCTCAATCGTGCTGGAGCCTAGGGCACCATCGGGAACCTAGGC
1 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
* *
11872395 CCTTGGTCATGCGGGAGCCTC-GAGCACCATCGGCAACCTAGGC
1 CCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGTAACCTAGGC
* * **
11872438 CCTTGGTCGTGAGAGAGCCTCGG-CACCATCGACAACCTAGGC
1 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
* * * * * *
11872480 TCTTGGTCGTGCGGGAGCCTCGGGCACCACCGG-CACCTTGGT
1 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
* * * * ***
11872522 GCTTGGTCATG-GGTGAGCCTCAGACACCATCGGCAACCTTTTC
1 CCTTGGTCGTGCGG-GAGCCTCGGACACCATCGGTAACCTAGGC
** * * * *
11872565 CCTTGGAT-GTATGGAAGCCTCAGACACCATTGATAACCTAGGC
1 CCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
* * *
11872608 CTTTGGTCGTGCGGGAGCCTCGAACACTATCGGTAACCTAGGC
1 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
* *
11872651 CCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGC
1 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
* * * * *
11872694 CCTTGGTCGTGTGGGAGCCTCGGACACCATCAGCAACTTTGTG-
1 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTAACCTAG-GC
* *
11872737 -CTTGGAT-GTGCTGGAGCCTCGAACACCATCGGTAACCTAGGC
1 CCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
* * *
11872779 CCTTGGTCGTGCGGCAGCCTCGGGCACCATCGGCAACCTAGG-
1 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
*
11872821 CCTTCGGTCGTGCGGGAGCCTCGGGCACCATCGAG-AACCTAGGC
1 CCTT-GGTCGTGCGGGAGCCTCGGACACCATCG-GTAACCTAGGC
* *
11872865 CCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGC
1 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
*
11872908 CCTTGGTCGTG-GGAGAGCCTCGG-CACCATCGGCAACCTAGGC
1 CCTTGGTCGTGCGG-GAGCCTCGGACACCATCGGTAACCTAGGC
* * * * *
11872950 CCTTGGTCGTGTGGGAGCCTC-GAGCATCATCGG-CACCTTGGT
1 CCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGTAACCTAGGC
* * * * * * * *
11872992 GCTTGGAT-GTGTGGAAGCCTTGGACACCATCGG-CACTTTGGT
1 CCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
* * * **
11873034 GCTTGGAT-GTGCGGGAGCCTCGGGCAACATCGACAACCTAGGC
1 CCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
* * *
11873077 CCCTGGTCGTGAGAGAGCCTC-GAGCACCATCGGTAACCTAGGC
1 CCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGTAACCTAGGC
*
11873120 CCCTGGTCGTGCGGGAGCCTC-GAGCACCATCGGTAACCTAGGC
1 CCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGTAACCTAGGC
* * * * **
11873163 CCCTGGTCTTGCGAGAGCCTC-GAGACCATCGACAACCTAGGC
1 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
** ** * * *
11873205 CCTTGGTCGTGCAAGAAACTCAGG-CACTATCGG-CACTTAGGC
1 CCTTGGTCGTGCGGGAGCCTC-GGACACCATCGGTAACCTAGGC
* * *
11873247 CGTTGGTTGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGC
1 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
* * * **
11873290 CCCTGGTCGTGCGAGAGCCTCGGGCACCATCGACAACCTAGGAC
1 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGG-C
* * * * **
11873334 CC-TGGTAGTCCGGGAGACTCGGGCACCATCGGCGACCTAGGC
1 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
* * * *
11873376 CCATGGTCGTGTGGGAGCCTCGGGCACCATCGGCAACCTAGGC
1 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
* * * *
11873419 CCTTGGTCGTGCGAGAGCCTCGG-GACCATCGG-CACCTAAGC
1 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
*
11873460 CCTTGGTCGTGTGGGAGCCT
1 CCTTGGTCGTGCGGGAGCCT
11873480 AGGGTACCAT
Statistics
Matches: 1331, Mismatches: 261, Indels: 92
0.79 0.15 0.05
Matches are distributed among these distances:
41 85 0.06
42 415 0.31
43 814 0.61
44 17 0.01
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (43 bp):
CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGC
Found at i:11873287 original size:213 final size:210
Alignment explanation
Indices: 11871800--11873494 Score: 1486
Period size: 213 Copynumber: 8.0 Consensus size: 210
11871790 ACCATCAGCA
* * * *
11871800 CCTTGGTCGTGCTAGAGCCTCGGGCACCATTGGTAACCTAGGTCCTT-GTCGTGTGGGAGCCTCG
1 CCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-
* * * * *
11871864 GGCACTATTGGTAACCTAGGCCCTTGATCGTGCGAGAGCCTTG-GCACCATC-GCAACCTAGGCC
65 GGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAG-ACCATCGGCAACCTAGGCC
* * *
11871927 CTTGGTCGTGCGGGAGCCTCGGATACCATCGGTAACCTAGAACCTTGGTCG-GCGGGAGCCTCGG
129 CTTGGTCGTGCAGGAGCCTCGG-CACCATCGG-AACCTAG-GCCTTGGTCGTGCGGGAGCCTCGG
*
11871991 GCACCATCGGCAAACTAGGC
191 GCACCATCGGCAACCTAGGC
* * * *** * * * *
11872011 CCTTGGTCGTACCG-GAGCCTCGGGCACCATCGG-CACCTTGGTGATTGGTCATGGGGGAGCTTT
1 CCTTGGTCGT-GCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTC
* * * * * * *
11872074 GGACACCATCGGTAACCTAGGCCCTTGGAT-ATACGGAAGCCTCAGACACCATCAGTACCCTAGG
65 GG-CACCATCGGTAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC-GAGACCATCGGCAACCTAGG
* ** * * * *
11872138 CCTTTACTCGTACAGGAGCCTCGAACACCATCGGTAACCTAGGTCTCAGGTCGTGCGGGAGCCTC
127 CCCTTGGTCGTGCAGGAGCCTCG-GCACCATCGG-AACCTAGGCCT-TGGTCGTGCGGGAGCCTC
*
11872203 GGGCACCATCGGAAACCTAGGC
189 GGGCACCATCGGCAACCTAGGC
* * * * * * ** *
11872225 CCTTGGTCGTGTGGGAGCCTCAGAC-CCATCGG-CACCTTGGTGCTTGGAT-GTACGGGAGCCTC
1 CCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC
* * * * *
11872287 GAACACCATCGATAACCTAGGCCCTTGGTCGTACGGGAGCCTTG-GACACTATCGGCAACATAGG
65 G-GCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGAC-C-ATCGGCAACCTAGG
*** * * *
11872351 CCCTCAATCGTGCTGGAGCCTAGGGCACCATCGGGAACCTAGGCCCTTGGTCATGCGGGAGCCTC
127 CCCTTGGTCGTGCAGGAGCCT-CGGCACCATC-GGAACCTAGG-CCTTGGTCGTGCGGGAGCCTC
*
11872416 GAGCACCATCGGCAACCTAGGC
189 GGGCACCATCGGCAACCTAGGC
* ** *
11872438 CCTTGGTCGTGAGAGAGCCTC-GGCACCATCGACAACCTAGGCTCTTGGTCGTGCGGGAGCCTCG
1 CCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-
* * * ** * * ***
11872502 GGCACCACCGG-CACCTTGGTGCTTGGTCATG-GGTGAGCCTCAGACACCATCGGCAACCTTTTC
65 GGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGG-GAGCCTC-GAGACCATCGGCAACCTAGGC
* * *
11872565 CCTTGGAT-GT--ATGGAAGCCTCAGACACCATTGATAACCTAGGCCTTTGGTCGTGCGGGAGCC
128 CCTTGG-TCGTGCA-GG-AGCCTC-GGCACCATCG-GAACCTAGGCC-TTGGTCGTGCGGGAGCC
** * *
11872627 TCGAACACTATCGGTAACCTAGGC
187 TCGGGCACCATCGGCAACCTAGGC
* * *
11872651 CCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGTGGGAGCCTCG
1 CCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* * * * * * *
11872716 GACACCATCAGCAACTTTGTG--CTTGGAT-GTGCTGGAGCCTCGAACACCATCGGTAACCTAGG
66 G-CACCATCGGTAACCTAG-GCCCTTGG-TCGTGCGGGAGCCTCG-AGACCATCGGCAACCTAGG
11872778 CCCTTGGTCGTGC-GGCAGCCTCGGGCACCATCGGCAACCTAGGCCTTCGGTCGTGCGGGAGCCT
127 CCCTTGGTCGTGCAGG-AGCCTC-GGCACCATCGG-AACCTAGGCCTT-GGTCGTGCGGGAGCCT
11872842 CGGGCACCATCGAG-AACCTAGGC
188 CGGGCACCATCG-GCAACCTAGGC
11872865 CCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTG-GGAGAGCCTC
1 CCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGG-GAGCCTC
* * * * **
11872929 GGCACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGAGCATCATCGGC-ACCTTGGTG
65 GGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAG-ACCATCGGCAACCTAGGCC
* * * * * *
11872993 CTTGGAT-GTG-TGGAAGCCTTGGACACCATCGGCACTTTGGTGCTTGGAT-GTGCGGGAGCCTC
129 CTTGG-TCGTGCAGG-AGCCTCGG-CACCATCGGAACCTAGG-CCTTGG-TCGTGCGGGAGCCTC
* *
11873055 GGGCAACATCGACAACCTAGGC
189 GGGCACCATCGGCAACCTAGGC
* * * *
11873077 CCCTGGTCGTGAGAGAGCCTCGAGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
1 CCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* * * *
11873142 AGCACCATCGGTAACCTAGGCCCCTGGTCTTGCGAGAGCCTCGAGACCATCGACAACCTAGGCCC
66 -GCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGACCATCGGCAACCTAGGCCC
* ** * * * *
11873207 TTGGTCGTGCAAGAAACTCAGGCACTATCGGCACTTAGGCCGTTGGTTGTGCGGGAGCCTCGGGC
130 TTGGTCGTGCAGGAGCCTC-GGCACCATCGGAACCTAGGCC-TTGGTCGTGCGGGAGCCTCGGGC
*
11873272 ACCATCGGTAACCTAGGC
193 ACCATCGGCAACCTAGGC
* ** * * *
11873290 CCCTGGTCGTGCGAGAGCCTCGGGCACCATCGACAACCTAGGACCC-TGGTAGTCCGGGAGACTC
1 CCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGG-CCCTTGGTCGTGCGGGAGCCTC
** * * *
11873354 GGGCACCATCGGCGACCTAGGCCCATGGTCGTGTGGGAGCCTCGGGCACCATCGGCAACCTAGGC
65 -GGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAG-ACCATCGGCAACCTAGGC
* * * * *
11873419 CCTTGGTCGTGC-GAGAGCCTCGGGACCATCGGCACCTAAGCCCTTGGTCGTGTGGGAGCCTAGG
128 CCTTGGTCGTGCAG-GAGCCTCGGCACCATCGGAACCT-AGGCCTTGGTCGTGCGGGAGCCTCGG
*
11873483 GTACCATCGGCA
191 GCACCATCGGCA
11873495 CCTTGGTGCA
Statistics
Matches: 1215, Mismatches: 200, Indels: 136
0.78 0.13 0.09
Matches are distributed among these distances:
210 11 0.01
211 72 0.06
212 133 0.11
213 624 0.51
214 363 0.30
215 11 0.01
216 1 0.00
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (210 bp):
CCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
GCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGACCATCGGCAACCTAGGCCCT
TGGTCGTGCAGGAGCCTCGGCACCATCGGAACCTAGGCCTTGGTCGTGCGGGAGCCTCGGGCACC
ATCGGCAACCTAGGC
Found at i:11873516 original size:256 final size:252
Alignment explanation
Indices: 11871814--11873519 Score: 1497
Period size: 256 Copynumber: 6.7 Consensus size: 252
11871804 GGTCGTGCTA
* * * * *
11871814 GAGCCTCGGGCACCATTGGTAACCTAGGTCCTT-GTCGTGTGGGAGCCTCGGGCACTATTGGTAA
1 GAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAA
* *
11871878 CCTAGGCCCTTGATCGTGCGAGAGCCTTGGCACCATC-GCAACCTAGGCCCTTGGTCGTGCGGGA
66 CCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
** * * *** * *
11871942 GCCTCGGATACCATCGGTAACCTAGAACCTTGGTCG-GCGGGAGCCTCGGGCACCATCGGCAAAC
131 GCCTCGGGCACCATCGG-CACCTTGGTGCTTGGT-GTGCGGGAGCCTCGGACACCATCGG-AACC
* * * *** *
11872006 TAGGCCCTTGGTCGTACCGGAGCCTCGGGCACCATCGGC-ACCTTGGTGATTGGTCA-TGGGG
193 TAGGCCCTTGGTCGT-GCGGAGCCTCGGGCACCATCGACAACCTAGG-CCCTGGT-AGTGCGG
* * * * * * * * *
11872067 GAGCTTTGGACACCATCGGTAACCTAGGCCCTTGGAT-ATACGGAAGCCTCAGACACCATCAGTA
1 GAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGTA
* * ** * * * * *
11872131 CCCTAGGCCTTTACTCGTAC-AGGAGCCTCGAACACCATCGGTAACCTAGG-TCTCAGGTCGTGC
65 ACCTAGGCCCTTGGTCGTGCGA-GAGCCTCG-GCACCATCGGCAACCTAGGCCCT-TGGTCGTGC
* * ** * * *
11872194 GGGAGCCTCGGGCACCATCGGAAACCTAGGCCCTTGGTCGTGTGGGAGCCTCAGAC-CCATCGGC
127 GGGAGCCTCGGGCACCATCGG-CACCTTGGTGCTTGGT-GTGCGGGAGCCTCGGACACCATCGGA
* ** * ** * * *
11872258 ACCTTGGTGCTTGGAT-GTACGGGAGCCTCGAACACCATCGATAACCTAGGCCCTTGGTCGTACG
190 ACCTAGGCCCTTGG-TCGTGC-GGAGCCTCGGGCACCATCGACAACCTAGGCCC-TGGTAGTGCG
11872322 G
252 G
* * * * * *** * * *
11872323 GAGCCTTGGACACTATCGGCAACATAGGCCCTCAATCGTGCTGGAGCCTAGGGCACCATCGGGAA
1 GAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAA
* * * *
11872388 CCTAGGCCCTTGGTCATGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGAGAG
66 CCTAGGCCCTTGGTCGTGCGAGAGCCTCG-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
* * * * *
11872453 AGCCTC-GGCACCATCGACAACCTAGGCT-CTTGGTCGTGCGGGAGCCTCGGGCACCACCGGCAC
130 AGCCTCGGGCACCATCGGC-ACCTTGG-TGCTTGGT-GTGCGGGAGCCTCGGACACCATCGGAAC
* ** * * * * * *** **
11872516 CTTGGTGCTTGGTCATGGGTGAGCCTCAGACACCATCGGCAACCTTTTCCCTTGG-ATGTATGG
192 CTAGGCCCTTGGTCGTGCG-GAGCCTCGGGCACCATCGACAACCTAGGCCC-TGGTA-GTGCGG
* * * * * * ** *
11872579 AAGCCTCAGACACCATTGATAACCTAGGCCTTTGGTCGTGCGGGAGCCTCGAACACTATCGGTAA
1 GAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAA
* * * *
11872644 CCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGTGGG
66 CCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
* * * * * *
11872709 AGCCTCGGACACCATCAGCAACTTTGTGCTTGGATGTGCTGGAGCCTCGAACACCATCGGTAACC
130 AGCCTCGGGCACCATCGGCACCTTGGTGCTTGG-TGTGCGGGAGCCTCGGACACCATCGG-AACC
* * *
11872774 TAGGCCCTTGGTCGTGCGGCAGCCTCGGGCACCATCGGCAACCTAGGCCTTCGGTCGTGCGG
193 TAGGCCCTTGGTCGTGCGG-AGCCTCGGGCACCATCGACAACCTAGGCCCT-GGTAGTGCGG
*
11872836 GAGCCTCGGGCACCATCGAG-AACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGTA
1 GAGCCTCGGGCACCATCG-GTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTA
* *
11872900 ACCTAGGCCCTTGGTCGTGGGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGTGGG
65 ACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
* * * * * * *
11872965 AGCCTCGAGCATCATCGGCACCTTGGTGCTTGGATGTGTGGAAGCCTTGGACACCATCGGCACTT
130 AGCCTCGGGCACCATCGGCACCTTGGTGCTTGG-TGTGCGGGAGCCTCGGACACCATCGGAACCT
* ** * * * *
11873030 TGGTGCTTGGAT-GTGCGGGAGCCTCGGGCAACATCGACAACCTAGGCCCCTGGTCGTGAGA
194 AGGCCCTTGG-TCGTGC-GGAGCCTCGGGCACCATCGACAACCTAGG-CCCTGGTAGTGCGG
* * *
11873091 GAGCCTCGAGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGAGCACCATCGGTAA
1 GAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAA
* * * **
11873156 CCTAGGCCCCTGGTCTTGCGAGAGCCTCGAG-ACCATCGACAACCTAGGCCCTTGGTCGTGCAAG
66 CCTAGGCCCTTGGTCGTGCGAGAGCCTCG-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
** * * * *
11873220 AAACTCAGGCACTATCGGCA-CTTAGG-CCGTTGGTTGTGCGGGAGCCTCGGGCACCATCGGTAA
130 AGCCTCGGGCACCATCGGCACCTT-GGTGC-TTGG-TGTGCGGGAGCCTCGGACACCATCGG-AA
* *
11873283 CCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGACAACCTAGGACCCTGGTAGTCCGG
191 CCTAGGCCCTTGGTCGTGCG-GAGCCTCGGGCACCATCGACAACCTAGG-CCCTGGTAGTGCGG
* ** * * *
11873347 GAGACTCGGGCACCATCGGCGACCTAGGCCCATGGTCGTGTGGGAGCCTCGGGCACCATCGGCAA
1 GAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAA
* * *
11873412 CCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGACCATCGGC-ACCTAAGCCCTTGGTCGTGTGGGA
66 CCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* * *
11873476 GCCTAGGGTACCATCGGCACCTTGGTGCATCGGATGTGCGGGAG
131 GCCTCGGGCACCATCGGCACCTTGGTGC-TTGG-TGTGCGGGAG
11873520 GGTCGAGCAC
Statistics
Matches: 1170, Mismatches: 240, Indels: 83
0.78 0.16 0.06
Matches are distributed among these distances:
253 29 0.02
254 47 0.04
255 322 0.28
256 622 0.53
257 150 0.13
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (252 bp):
GAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAA
CCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
GCCTCGGGCACCATCGGCACCTTGGTGCTTGGTGTGCGGGAGCCTCGGACACCATCGGAACCTAG
GCCCTTGGTCGTGCGGAGCCTCGGGCACCATCGACAACCTAGGCCCTGGTAGTGCGG
Found at i:11873857 original size:17 final size:17
Alignment explanation
Indices: 11873835--11873867 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
11873825 AAAAAAAAAG
11873835 AATGTCGCCTGGTAGCA
1 AATGTCGCCTGGTAGCA
11873852 AATGTCGCCTGGTAGC
1 AATGTCGCCTGGTAGC
11873868 GTGTTTTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.24
Consensus pattern (17 bp):
AATGTCGCCTGGTAGCA
Found at i:11886713 original size:35 final size:35
Alignment explanation
Indices: 11886667--11886733 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
11886657 TCTCCGGAGC
*
11886667 TTGGCAAATATGGAAAGTAATCTTCAAAGATACGT
1 TTGGCAAATATGGAAAGGAATCTTCAAAGATACGT
* *
11886702 TTGGCAAATATGGAAGGGGATCTTCAAAGATA
1 TTGGCAAATATGGAAAGGAATCTTCAAAGATA
11886734 TGCAATCCTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.39, C:0.10, G:0.24, T:0.27
Consensus pattern (35 bp):
TTGGCAAATATGGAAAGGAATCTTCAAAGATACGT
Found at i:11887266 original size:43 final size:42
Alignment explanation
Indices: 11887219--11890343 Score: 2582
Period size: 43 Copynumber: 73.4 Consensus size: 42
11887209 GAGACTCAGA
* * * * *
11887219 CACCATCGGGAAACTAGGCTCTTGGTTGTGCGGGAGCCCCGCG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG-G
* * ** * * * *
11887262 CACCATCAGCACCCT-GGTGCTCGGAT-GTGCGAGAGCGTCGA
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
* * *
11887303 CACCATCGGTAACCTAGGCCCTTGGTCATGCAGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GG
* * * *
11887346 CACTATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCAG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * *
11887388 TACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAACCTCGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* *
11887430 ACACCATCGGAAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGG
1 -CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GG
* * * *
11887474 CACCATCGGTAAACTAGGCCCTTGGTC-TCGTGGGAGCCTTGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGT-GCGGGAGCC-TCGG
* * * * *
11887517 CACCATCGGC-ACCTTGGCGCTTTGCCGTGCGGGAGCCTCAGA
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GG
* * *
11887559 CACCATCGGTAACCTAGGCCCTTGGAT-GTGCGGAAGCCTCAGA
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC-GG
* *
11887602 CACCATCGGCAACCTAGGCCCTTTGTCGTGCGGGAGCCTTGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * * *
11887644 ACACCATCTGCAACCTAGACCCCTGGTTGTGCGGGAGCCTCGGG
1 -CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GG
* * * *
11887688 CAACATCGGTAACCTAGGCCCTTGGTCGTGCAGGACCCTCGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* ** *
11887730 ACACCATCGGC-ACCTTGGTACTTGGAT-GTGCGGGAGCCTCGAA
1 -CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG-G
* * * *
11887773 CACCATCGGCAATCTAGGCCCTTGGAT-ATTCCGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC-GG
** * *
11887816 CACCATCGATAACCTAGGCCCTCGATCGTGCGGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GG
* *
11887859 CACCATCGGCAACCTTGGCCCTTGGTCGTGCGAGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GG
*** *
11887902 CACCATTTCCAACCTAGGCCCTTAGTCGTG-GGAGAGCCTCGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGG-GAGCCTCGG
* * *
11887944 CACCATCGGTAATCTAGGCCCTGGGTCGTGCGGGAGCCTCTGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GG
* ** *
11887987 CACCATCGGC-ACCTTGGTGCTTGGAT-GTGTGGGAGCCTCGG
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
* * * ** **
11888028 ACACCATCGG-TACTTTGGTGCTTGGAT-GTGCGGGAGCCTCAAA
1 -CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC-GG
* * *
11888071 CACCATCGACAACCTAGGCCCCTGGCCGTGCGGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GG
* * *
11888114 CACCATCGGCAACCTAGTCCCCTGGTCGTGCAGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GG
* * *
11888157 CACCATCGGTAACCTAGGCCCCTGGTCGTGTGGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GG
* * * * *
11888200 CAGCATCGGCAACCTAGGCCCCTAGTCGTGAGAGAGCCTCGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * * *
11888242 GACCATCGGTAACCTAGGCCCTTGGTCATGCGAGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GG
* *
11888285 CACCATCAGC-ACCTACGCCCTTGGTCGTGCGGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GG
* * ** * *
11888327 CACCATCGAC-ACCTTGGTGCTTGGAT-GTGGGGGAGCCTCAGA
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC-GG
* * ** **
11888369 CACCATCGG-TACTTTTGTGCTTGGAT-GTGCGGGAGCCTCGG
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
*
11888410 ACACCAACGGCAACCTAGGACCC-TGGTCGTGCGGGAGCCTCGGG
1 -CACCATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCTC-GG
* *** *
11888454 CACCATCGGTAACCTAGGCCCCAAGTCGTGCAGGAGCCTCGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * * * *
11888496 ACACCATCGACAACCTGGGCCCTTGGTCATTCGAGAGCCTCGG
1 -CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* ** * **
11888539 GACCATCGGTTACCTAGGCCCCTGGTCGTAAGGGAGCCTCTGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GG
* * *
11888582 GACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GG
* * *
11888625 CACCATCGGTAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GG
* *
11888668 CACCATCGG-AACCCTAGGTCCTTGGTCGTGCGAGAGCCTCGG
1 CACCATCGGCAA-CCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* **
11888710 GACCATCGGC-ACCTTTGCCCTTGGTCGTGCGGGAGCCTCGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * *
11888751 ACACCATCGGCTACCTAGGCCCTTAGTCGTACGGGAGCCTCGG
1 -CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * *
11888794 ACACCATCGGCAACCTAGTCCCCTGGTCGTGCAGGAGCCTCGGG
1 -CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GG
* *
11888838 CACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGACCCTCGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * * * * * **
11888880 ACAGCATCGGTAACCTAGGCCCCTAGTTGTGAGAAAGCCTCGG
1 -CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * * *
11888923 GACCATCGGCAACCGAGGCCTTTGGTCGTGCGAGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GG
* *
11888966 CACCATCAGC-ACCTACGCCCTTGGTCGTGCGGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GG
* ** * * *
11889008 CACCATCGGC-ACCTTGGTGCTTGGAT-GTGGGGGAGCTTCAGA
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC-GG
* * ** *
11889050 CACCATCGGC--CTTTGGTGCTTGGAT-GTGTGGGAGCCTCGG
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
* *
11889090 ACACCAACGGCAACCTAGGACCC-TGGTCATGCGGGAGCCTCGGG
1 -CACCATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCTC-GG
*
11889134 CACCATCGGCAACCGAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * * * *
11889176 ACACCATCGACAACCTAGGCCCCTGGTCGTCCGAGAGCCTTGGG
1 -CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCC-TCGG
** *
11889220 C-CCATCGGTTACCTAGGCCCCTGGTCGTGCGGGAGCCTCTGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GG
* *
11889262 CACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GG
* * * **
11889305 CACCATCGGTAACCTAGGCCCCTGGTCGTACAAGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GG
* *
11889348 CACCATCGGTACCCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * * *
11889390 GACCATCGGC-ACCTTGTCCCTTGGTCGTGCGAGAGCCTCGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * * *
11889431 ACACCATCGGCTACCTAGGCCCTTAGTCGTACGAGAGCCTCGG
1 -CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * **
11889474 ACACCATCGACAACCTAGTTCCC-TGGTCGTGTAGGAGCCTCGGG
1 -CACCATCGGCAACCTAG-GCCCTTGGTCGTGCGGGAGCCTC-GG
*
11889518 CACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GG
** * * * * **
11889561 CAGTATTGGCAACCTAGGCCCCTAGTCGTGAGAAAGCCTCGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * * *
11889603 GACCATTGGCAACCTAGGCCTTTGGTCGTGCGAGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GG
* * *
11889646 CACCATCAGC-ACCTACGCCCTTGGTCGTGTGGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GG
* * ** * *
11889688 CACCATTGGC-ACCTTGGTGCTTGGAT-GTGGGGGAGCCTCAGA
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC-GG
* * ** **
11889730 CACCATCGGC-ACTTTGGTGCTTGGAT-GTGCTAGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC-GG
* * * **
11889772 CACCATCGACAACCTAGGCCCCTGGTCGTCCAAGAGCCTCGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * * **
11889814 TACCATCGGCTACCTAGGCCGC-TAGTCGTGCAAGAGCCTCTGG
1 CACCATCGGCAACCTAGGCC-CTTGGTCGTGCGGGAGCCTC-GG
* *
11889857 CACCATCAGCAACCTAGG-CCTCTGGTCGTGCGGGAGCCTTGGG
1 CACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAGCC-TCGG
* * *
11889900 CACCATCGGCAACCTAGGCCCCTAGTCGTGCGAGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GG
* * *
11889943 CACCATCGGCACCCTAGGCCCTTGGTCATGCGAGAGCCTCGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * * * *
11889985 GACCATTGGC-ACCTTGGCACTTGGTCGTACGGGAGCCTCGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * *
11890026 ACACCATCGGCTA-CTAGGCCCTTGGTAGTACGGGAGCCTCGGG
1 -CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GG
* * * *
11890069 AAGCATCGGCAAACTAGGACCC-TGGTCGTGCGGGAGCCTAAGG
1 CACCATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCT-CGG
* *** *
11890112 CACCATCGGC-ACCTTGGTGATTGGAT-GTGCGGGAGCCTTGG
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
* *
11890153 ACACCCTCGGCAACCTAGGCCCTTGGTCGTTGCAGGAGCCTCGGG
1 -CACCATCGGCAACCTAGGCCCTTGGTCG-TGCGGGAGCCTC-GG
* * *
11890198 CACCATCGGTAACCTAGGCCATTGGTCGTGCGAGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GG
* * * * *
11890241 CACCATCGGC-ACCTTGGTGCCTCGGAT-ATGCGGGAGCCTCAAG
1 CACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTC-GG
* * * **
11890284 CAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGG
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
*
11890325 ACACCATAGGCAACCTAGG
1 -CACCATCGGCAACCTAGG
11890344 ACGTTGGATG
Statistics
Matches: 2532, Mismatches: 457, Indels: 186
0.80 0.14 0.06
Matches are distributed among these distances:
40 1 0.00
41 134 0.05
42 882 0.35
43 1449 0.57
44 64 0.03
45 2 0.00
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.19
Consensus pattern (42 bp):
CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
Found at i:11887339 original size:84 final size:86
Alignment explanation
Indices: 11887179--11887340 Score: 213
Period size: 84 Copynumber: 1.9 Consensus size: 86
11887169 CCTCAAGCAG
* * *
11887179 CATCAGCACCTTGGTGCCTTGGATGTGCAAGAGACTCAGACACCATCGGGAAACTAGGCTCTTGG
1 CATCAGCACCCTGGTGCCTCGGATGTGCAAGAGACTCAGACACCATCGGGAAACTAGGCCCTTGG
** *
11887244 TTGTGCGGGAGCCCCGCGCAC
66 TCATGCAGGAGCCCCGCGCAC
* * *
11887265 CATCAGCACCCTGGTG-CTCGGATGTGCGAGAG-CGTC-GACACCATCGGTAACCTAGGCCCTTG
1 CATCAGCACCCTGGTGCCTCGGATGTGCAAGAGAC-TCAGACACCATCGGGAAACTAGGCCCTTG
11887327 GTCATGCAGGAGCC
65 GTCATGCAGGAGCC
11887341 TCGGGCACTA
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
84 35 0.53
85 16 0.24
86 15 0.23
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.19
Consensus pattern (86 bp):
CATCAGCACCCTGGTGCCTCGGATGTGCAAGAGACTCAGACACCATCGGGAAACTAGGCCCTTGG
TCATGCAGGAGCCCCGCGCAC
Found at i:11887465 original size:128 final size:128
Alignment explanation
Indices: 11887219--11890249 Score: 2680
Period size: 128 Copynumber: 23.7 Consensus size: 128
11887209 GAGACTCAGA
* * * * * * * * **
11887219 CACCATCGGGAAACTAGGCTCTTGGTTGTGCGGGAGCCCCGCGCACCATCAGCACCCT-GGTGCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCG-GCACCATCGGCAACCTAGGCCCT
* * * * *
11887283 CGGAT-GTGCGAGAGCGTC-GACACCATCGGTAACCTAGGCCCTTGGTCATGCAGGAGCCTCGGG
65 TGG-TCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * * *
11887346 CACTATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCAGTACCATCGGCAACCTAGGCCCTT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTT
* * * *
11887411 GGTCGTGCGAGAACCTCGGACACCATCGGAAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGG
66 GGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * * * *
11887474 CACCATCGGTAAACTAGGCCCTTGGTCTCGTG-G-GAGCCTTGGGCACCATCGGC-ACCTTGGCG
1 CACCATCGGCAACCTAGGCCCTTGG--TCGTGCGAGAGCC-TCGGCACCATCGGCAACCTAGGCC
* * * * * * *
11887536 CTTTGCCGTGCGGGAGCCTCAGACACCATCGGTAACCTAGGCCCTTGGAT-GTGCGGAAGCCTCA
63 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
*
11887600 GA
127 GG
* * * * * *
11887602 CACCATCGGCAACCTAGGCCCTTTGTCGTGCGGGAGCCTTGGACACCATCTGCAACCTAGACCCC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG-CACCATCGGCAACCTAGGCCCT
* * * * * *
11887667 TGGTTGTGCGGGAGCCTCGGGCAACATCGGTAACCTAGGCCCTTGGTCGTGCAGGACCCTCGGA
65 TGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* ** * * *
11887731 CACCATCGGC-ACCTTGGTACTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAATCTAGGCCC
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCG-GCACCATCGGCAACCTAGGCCC
** * * * *
11887794 TTGGATATTCCG-GAGCCTCGGGCACCATCGATAACCTAGGCCCTCGATCGTGCGGGAGCCTCGG
64 TTGG-TCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
11887858 G
128 G
* ***
11887859 CACCATCGGCAACCTTGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATTTCCAACCTAGGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCT
* * * * *
11887924 TAGTCGTGGGAGAGCCTC-GGCACCATCGGTAATCTAGGCCCTGGGTCGTGCGGGAGCCTCTGG
65 TGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* ** * * * * * **
11887987 CACCATCGGC-ACCTTGGTGCTTGGAT-GTGTGGGAGCCTCGGACACCATCGG-TACTTTGGTGC
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGG-CACCATCGGCAACCTAGGCCC
* *** ** * *
11888049 TTGGAT-GTGCGGGAGCCTCAAACACCATCGACAACCTAGGCCCCTGGCCGTGCGGGAGCCTCGG
64 TTGG-TCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
11888113 G
128 G
* * *
11888114 CACCATCGGCAACCTAGTCCCCTGGTCGTGC-AGGAGCCTCGGGCACCATCGGTAACCTAGGCCC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGA-GAGCCTC-GGCACCATCGGCAACCTAGGCCC
* * * * * * * * *
11888178 CTGGTCGTGTGGGAGCCTCGGGCAGCATCGGCAACCTAGGCCCCTAGTCGTGAGAGAGCCTCGGG
64 TTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * * *
11888243 -ACCATCGGTAACCTAGGCCCTTGGTCATGCGAGAGCCTCGGGCACCATCAGC-ACCTACGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCT
* * ** * *
11888306 TGGTCGTGCGGGAGCCTCGGGCACCATC-G-ACACCTTGGTGCTTGGAT-GTGGGGGAGCCTCAG
65 TGGTCGTGCGAGAGCCTCGGGCACCATCGGTA-ACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
*
11888368 A
128 G
* * ** ** * *
11888369 CACCATCGG-TACTTTTGTGCTTGGAT-GTGCGGGAGCCTCGGACACCAACGGCAACCTAGGACC
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGG-CACCATCGGCAACCTAGG-CC
* *** *
11888432 C-TGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCAAGTCGTGCAGGAGCCTCGG
63 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
11888496 A
128 G
* * * * * ** *
11888497 CACCATCGACAACCTGGGCCCTTGGTCATTCGAGAGCCTCGGGACCATCGGTTACCTAGGCCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTT
** * *
11888562 GGTCGTAAGGGAGCCTCTGGG-ACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGG
66 GGTCGTGCGAGAGCCTC-GGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * *
11888625 CACCATCGGTAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGG-AACCCTAGGTCC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAA-CCTAGGCCC
* ** *
11888689 TTGGTCGTGCGAGAGCCTCGGG-ACCATCGG-CACCTTTGCCCTTGGTCGTGCGGGAGCCTCGGA
64 TTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * * * * *
11888752 CACCATCGGCTACCTAGGCCCTTAGTCGTACGGGAGCCTCGGACACCATCGGCAACCTAGTCCCC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG-CACCATCGGCAACCTAGGCCCT
* * * *
11888817 TGGTCGTGC-AGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGACCCTCGGA
65 TGGTCGTGCGA-GAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * * * * * * * * *
11888881 CAGCATCGGTAACCTAGGCCCCTAGTTGTGAGAAAGCCTCGGGACCATCGGCAACCGAGGCCTTT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTT
* * *
11888946 GGTCGTGCGAGAGCCTCGGGCACCATCAG-CACCTACGCCCTTGGTCGTGCGGGAGCCTCGGG
66 GGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* ** * * * * * * **
11889008 CACCATCGGC-ACCTTGGTGCTTGGAT-GTGGGGGAGCTTCAGACACCATCGGC--CTTTGGTGC
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCC
* * * * * *
11889069 TTGGAT-GTGTGGGAGCCTCGGACACCAACGGCAACCTAGGACCC-TGGTCATGCGGGAGCCTCG
64 TTGG-TCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGG-CCCTTGGTCGTGCGGGAGCCTCG
11889132 GG
127 GG
* * * *
11889134 CACCATCGGCAACCGAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGACAACCTAGGCCCC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG-CACCATCGGCAACCTAGGCCCT
* * * * *
11889199 TGGTCGTCCGAGAGCCTTGGGC-CCATCGGTTACCTAGGCCCCTGGTCGTGCGGGAGCCTCTGG
65 TGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * * * *
11889262 CACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCT
* * *
11889327 TGGTCGTACAAGAGCCTCGGGCACCATCGGTACCCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
65 TGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * *
11889391 -ACCATCGGC-ACCTTGTCCCTTGGTCGTGCGAGAGCCTCGGACACCATCGGCTACCTAGGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG-CACCATCGGCAACCTAGGCCCT
* * * ** * **
11889454 TAGTCGTACGAGAGCCTCGGACACCATCGACAACCTAGTTCCC-TGGTCGTGTAGGAGCCTCGGG
65 TGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAG-GCCCTTGGTCGTGCGGGAGCCTCGGG
* * ** * *
11889518 CACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCAGTATTGGCAACCTAGGCCCC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCT
* * * * * * *
11889583 TAGTCGTGAGAAAGCCTCGGG-ACCATTGGCAACCTAGGCCTTTGGTCGTGCGAGAGCCTCGGG
65 TGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * * * * * **
11889646 CACCATCAGC-ACCTACGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATTGGC-ACCTTGGTGCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCT
* * * * * * * ** **
11889709 TGGAT-GTGGGGGAGCCTCAGACACCATCGG-CACTTTGGTGCTTGGAT-GTGCTAGAGCCTCGG
65 TGG-TCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
11889771 G
128 G
* * * * * *
11889772 CACCATCGACAACCTAGGCCCCTGGTCGTCCAAGAGCCTCGGTACCATCGGCTACCTAGGCCGC-
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCC-CT
* * * * * *
11889836 TAGTCGTGCAAGAGCCTCTGGCACCATCAGCAACCTAGG-CCTCTGGTCGTGCGGGAGCCTTGGG
65 TGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGG
* * *
11889900 CACCATCGGCAACCTAGGCCCCTAGTCGTGCGAGAGCCTCGGGCACCATCGGCACCCTAGGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCT
* * * * * * *
11889965 TGGTCATGCGAGAGCCTCGGG-ACCATTGG-CACCTTGGCACTTGGTCGTACGGGAGCCTCGGA
65 TGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * * * * * *
11890027 CACCATCGGCTA-CTAGGCCCTTGGTAGTACGGGAGCCTCGGGAAGCATCGGCAAACTAGGACCC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAACCTAGG-CCC
* ** * * *** *
11890091 -TGGTCGTGCGGGAGCCTAAGGCACCATCGG-CACCTTGGTGATTGGAT-GTGCGGGAGCCTTGG
64 TTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
*
11890153 A
128 G
* *
11890154 CACCCTCGGCAACCTAGGCCCTTGGTCGTTGC-AGGAGCCTCGGGCACCATCGGTAACCTAGGCC
1 CACCATCGGCAACCTAGGCCCTTGGTCG-TGCGA-GAGCCTC-GGCACCATCGGCAACCTAGGCC
*
11890218 ATTGGTCGTGCGAGAGCCTCGGGCACCATCGG
63 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGG
11890250 CACCTTGGTG
Statistics
Matches: 2362, Mismatches: 450, Indels: 182
0.79 0.15 0.06
Matches are distributed among these distances:
125 30 0.01
126 272 0.12
127 673 0.28
128 853 0.36
129 526 0.22
130 8 0.00
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.19
Consensus pattern (128 bp):
CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTT
GGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
Found at i:11889387 original size:680 final size:681
Alignment explanation
Indices: 11887303--11890251 Score: 3495
Period size: 680 Copynumber: 4.3 Consensus size: 681
11887293 AGAGCGTCGA
* * * * **
11887303 CACCATCGGTAACCTAGGCCCTTGGTCATGCAGGAGCCTCGGGCACTATCGGTAACCTAGGCCCT
1 CACCATCGGT-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG-ACCATCGG-CACCTTTGCCCT
* * * * *
11887368 TGGTCGTGCGAGAGCCTCAG-TACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAACCTCGGAC
63 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
* * * *
11887432 ACCATCGGAAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGTAAACTAGGCCCTT
128 ACCATCGGCAACCTAGTCCCCTGGTCGTGCAGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTT
* * * * * * * * ** **
11887497 GGTC-TCGTGGGAGCCTTGGGCACCATCGGC-ACCTTGGCGCTTTGCCGTGCGGGAGCCTCAGAC
193 GGTCGT-GTGGGAGCCTCGGGCAGCATCGGCAACCTAGGCCCCTAGTCGTGAGAAAGCCTC-GGG
* * * * *
11887560 ACCATCGGTAACCTAGGCCCTTGGAT-GTGCG-GAAGCCTCAGACACCATCGGCAACCTAGGCCC
256 ACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAG-AGCCTCGGGCACCATCAGC-ACCTACGCCC
* * * * * *** * * * * *
11887623 TTTGTCGTGCGGGAGCCTTGGACACCATCTGCAACCTAGACCCCTGGTTGTGCGGGAGCCTCGGG
318 TTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGATGTGGGGGAGCCTCAGA
* * ** * * * *
11887688 CAACATCGGTAACC-TAGGCCCTTGG-TCGTGCAGGACCCTCGGACACCATCGGC-ACCTTGGTA
382 CACCATCGG--ACCTTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCAACGGCAACCTAGG-A
* ** * * * * *
11887750 -CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAATCTAGGCCCTTGGAT-ATTCCGGAGCCT
443 CCCTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTAG-TCGTGCAGGAGCCT
* * * * *
11887812 CGGGCACCATCGATAACCTAGG-CCCTCGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTTG
506 CGGACACCATCGACAACCTAGGCCCCT-GGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
* *** * *
11887876 GCCCTTGGTCGTGCGAGAGCCTCGGGCACCATTTCCAACCTAGGCCCTTAGTCGTG-GGAGAGCC
570 GCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGG-GAGCC
* * * *
11887940 TC-GGCACCATCGGTAATCTAGG-CCCTGGGTCGTGCGGGAGCCTCTGG
634 TCGGGCACCATCGGTAACCTAGGCCCCT-GGTCGTACGAGAGCCTCGGG
* * ** * * * **
11887987 CACCATCGGCACCTTGGTGCTTGGAT-GTGTGGGAGCCTCGGACACCATCGGTA-CTTTGGTGCT
1 CACCATCGGTACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG-GACCATCGGCACCTTT-GCCCT
** * * * *
11888050 TGGAT-GTGCGGGAGCCTCAAACACCATCGACAACCTAGGCCCCTGGCCGTGCGGGAGCCTCGGG
63 TGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
*
11888114 CACCATCGGCAACCTAGTCCCCTGGTCGTGCAGGAGCCTCGGGCACCATCGGTAACCTAGGCCCC
127 CACCATCGGCAACCTAGTCCCCTGGTCGTGCAGGAGCCTCGGGCACCATCGGTAACCTAGGCCCT
*
11888179 TGGTCGTGTGGGAGCCTCGGGCAGCATCGGCAACCTAGGCCCCTAGTCGTGAGAGAGCCTCGGGA
192 TGGTCGTGTGGGAGCCTCGGGCAGCATCGGCAACCTAGGCCCCTAGTCGTGAGAAAGCCTCGGGA
* *
11888244 CCATCGGTAACCTAGGCCCTTGGTCATGCGAGAGCCTCGGGCACCATCAGCACCTACGCCCTTGG
257 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCACCTACGCCCTTGG
*
11888309 TCGTGCGGGAGCCTCGGGCACCATCGACACCTTGGTGCTTGGATGTGGGGGAGCCTCAGACACCA
322 TCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCAGACACCA
*
11888374 TCGGTA-CTTTTGTGCTTGGATGTGCGGGAGCCTCGGACACCAACGGCAACCTAGGACCCTGGTC
387 TCGG-ACCTTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCAACGGCAACCTAGGACCCTGGTC
* **
11888438 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCAAGTCGTGCAGGAGCCTCGGACACCAT
451 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTAGTCGTGCAGGAGCCTCGGACACCAT
* * * * **
11888503 CGACAACCTGGGCCCTTGGTCATTCGAGAGCCTCGGG-ACCATCGGTTACCTAGGCCCCTGGTCG
516 CGACAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCG
** * *
11888567 TAAGGGAGCCTCTGGG-ACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCAT
581 TGCGAGAGCCTC-GGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCAT
*
11888631 CGGTAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGG
645 CGGTAACCTAGGCCCCTGGTCGTACGAGAGCCTCGGG
* * *
11888668 CACCATCGGAACCCTAGGTCCTTGGTCGTGCGAGAGCCTCGGGACCATCGGCACCTTTGCCCTTG
1 CACCATCGGTA-CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGACCATCGGCACCTTTGCCCTTG
* * *
11888733 GTCGTGCGGGAGCCTCGGACACCATCGGCTACCTAGGCCCTTAGTCGTACGGGAGCCTCGGACAC
65 GTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACAC
* *
11888798 CATCGGCAACCTAGTCCCCTGGTCGTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG
130 CATCGGCAACCTAGTCCCCTGGTCGTGCAGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGG
* * * * *
11888863 TCGTGCGGGACCCTCGGACAGCATCGGTAACCTAGGCCCCTAGTTGTGAGAAAGCCTCGGGACCA
195 TCGTGTGGGAGCCTCGGGCAGCATCGGCAACCTAGGCCCCTAGTCGTGAGAAAGCCTCGGGACCA
* *
11888928 TCGGCAACCGAGGCCTTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCACCTACGCCCTTGGTCG
260 TCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCACCTACGCCCTTGGTCG
*
11888993 TGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGGGGGAGCTTCAGACACCATCG
325 TGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCAGACACCATCG
* *
11889058 G-CCTTTGGTGCTTGGATGTGTGGGAGCCTCGGACACCAACGGCAACCTAGGACCCTGGTCATGC
390 GACCTTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCAACGGCAACCTAGGACCCTGGTCGTGC
* * *
11889122 GGGAGCCTCGGGCACCATCGGCAACCGAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGAC
455 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTAGTCGTGCAGGAGCCTCGGACACCATCGAC
* * **
11889187 AACCTAGGCCCCTGGTCGTCCGAGAGCCTTGGGC-CCATCGGTTACCTAGGCCCCTGGTCGTGCG
520 AACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * *
11889251 GGAGCCTCTGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTA
585 AGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTA
*
11889316 ACCTAGGCCCCTGGTCGTACAAGAGCCTCGGG
650 ACCTAGGCCCCTGGTCGTACGAGAGCCTCGGG
11889348 CACCATCGGTACCCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGACCATCGGCACC-TTGTCCCTT
1 CACCATCGGTA-CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGACCATCGGCACCTTTG-CCCTT
* * * * *
11889412 GGTCGTGCGAGAGCCTCGGACACCATCGGCTACCTAGGCCCTTAGTCGTACGAGAGCCTCGGACA
64 GGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACA
* * * *
11889477 CCATCGACAACCTAGTTCCCTGGTCGTGTAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
129 CCATCGGCAACCTAGTCCCCTGGTCGTGCAGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTG
* *
11889542 GTCGTGTGGGAGCCTCGGGCAGTATTGGCAACCTAGGCCCCTAGTCGTGAGAAAGCCTCGGGACC
194 GTCGTGTGGGAGCCTCGGGCAGCATCGGCAACCTAGGCCCCTAGTCGTGAGAAAGCCTCGGGACC
* *
11889607 ATTGGCAACCTAGGCCTTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCACCTACGCCCTTGGTC
259 ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCACCTACGCCCTTGGTC
* *
11889672 GTGTGGGAGCCTCGGGCACCATTGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCAGACACCATC
324 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCAGACACCATC
** * * * *
11889737 GG-CACTTTGGTGCTTGGATGTGCTAGAGCCTCGGGCACCATCGACAACCTAGGCCCCTGGTCGT
389 GGAC-CTTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCAACGGCAACCTAGGACCCTGGTCGT
* ** * * *
11889801 CCAAGAGCCTC-GGTACCATCGGCTACCTAGGCCGC-TAGTCGTGCAAGAGCCTCTGG-CACCAT
453 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC-CTTAGTCGTGCAGGAGCCTC-GGACACCAT
* * * *
11889863 C-AGCAACCTAGGCCTCTGGTCGTGCGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCCTAGTC
516 CGA-CAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* * * *
11889927 GTGCGAGAGCCTCGGGCACCATCGGCACCCTAGGCCCTTGGTCATGCGAGAGCCTCGGG-ACCAT
580 GTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCAT
* * * * * * *
11889991 TGG-CACCTTGGCACTTGGTCGTACGGGAGCCTCGGA
645 CGGTAACCTAGGCCCCTGGTCGTACGAGAGCCTCGGG
* * * * **
11890027 CACCATCGGCTA-CTAGGCCCTTGGTAGTACGGGAGCCTCGGGAAGCATCGGCAAACTAGGACCC
1 CACCATCGG-TACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG-ACCATCGGC-ACCTTTG-CCC
* * *** *
11890091 -TGGTCGTGCGGGAGCCTAAGG-CACCATCGGC-ACCTTGGTGATTGGAT-GTGCGGGAGCCTTG
62 TTGGTCGTGCGGGAGCCT-CGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
* * *
11890152 GACACCCTCGGCAACCTAGGCCCTTGGTCGTTGCAGGAGCCTCGGGCACCATCGGTAACCTAGGC
125 GACACCATCGGCAACCTAGTCCCCTGGTCG-TGCAGGAGCCTCGGGCACCATCGGTAACCTAGGC
* * * *
11890217 CATTGGTCGTGCGAGAGCCTCGGGCACCATCGGCA
189 CCTTGGTCGTGTGGGAGCCTCGGGCAGCATCGGCA
11890252 CCTTGGTGCC
Statistics
Matches: 1983, Mismatches: 242, Indels: 84
0.86 0.10 0.04
Matches are distributed among these distances:
678 28 0.01
679 95 0.05
680 901 0.45
681 634 0.32
682 92 0.05
683 199 0.10
684 34 0.02
ACGTcount: A:0.17, C:0.32, G:0.31, T:0.19
Consensus pattern (681 bp):
CACCATCGGTACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGACCATCGGCACCTTTGCCCTTGG
TCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACC
ATCGGCAACCTAGTCCCCTGGTCGTGCAGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGT
CGTGTGGGAGCCTCGGGCAGCATCGGCAACCTAGGCCCCTAGTCGTGAGAAAGCCTCGGGACCAT
CGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCACCTACGCCCTTGGTCGT
GCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCAGACACCATCGG
ACCTTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCAACGGCAACCTAGGACCCTGGTCGTGCG
GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTAGTCGTGCAGGAGCCTCGGACACCATCGACA
ACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGA
GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAA
CCTAGGCCCCTGGTCGTACGAGAGCCTCGGG
Found at i:11890252 original size:298 final size:298
Alignment explanation
Indices: 11887219--11890343 Score: 2694
Period size: 298 Copynumber: 10.5 Consensus size: 298
11887209 GAGACTCAGA
* * * * * * * * * **
11887219 CACCATCGGGAAACTAGGCTCTTGGTTGTGCGGGAGCCCCGCGCACCATCAGCACCCT-GGTGCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCT
* * * * * * * *
11887283 CGGAT-GTGCGAGAGCGTCGACACCATCGGTAACCTAGGCCCTTGGTCATGCAGGAGCCTCGGGC
66 TGG-TCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
* * * * *
11887347 ACTATCGG-TAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-AGTACCATCGGCAACCTAGGCCCT
130 ACCATCGGCT-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGAACCATCGGCAACCTAGGCCCC
* * * * *
11887410 TGGTCGTGCGAGAACCTCGGACACCATCGGAAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGGC
194 TGGTCGTGCGGGAGCCTCGG-CACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
* * * *
11887475 ACCATCGGTAAACTAGGCCCTTGGTC-TCGTGGGAGCCTTGGG
257 ACCATCGGCAACCTAGGCCCTTGGTCGT-GCGGGAGCCTCGGG
* * * * * * * *
11887517 CACCATCGGC-ACCTTGGCGCTTTGCCGTGCGGGAGCCTCAGACACCATCGGTAACCTAGGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCT
* * * *
11887581 TGGAT-GTGCGGAAGCCTCAGACACCATCGGCAACCTAGGCCCTTTGTCGTGCGGGAGCCTTGGA
66 TGG-TCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
* * * * * *
11887645 CACCATCTGCAACCTAGACCCCTGGTTGTGCGGGAGCCTCGGGCAA-CATCGGTAACCTAGGCCC
129 CACCATCGGCTACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG-AACCATCGGCAACCTAGGCCC
* * * * ** *
11887709 TTGGTCGTGCAGGACCCTCGGACACCATCGGCACCTTGGTACTTGGAT-GTGCGGGAGCCTCGAA
193 CTGGTCGTGCGGGAGCCTCGG-CACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGA
* * * *
11887773 CACCATCGGCAATCTAGGCCCTTGGAT-ATTCCGGAGCCTCGGG
256 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
** * * * *
11887816 CACCATCGATAACCTAGGCCCTCGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTTGGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCT
* *** *
11887881 TGGTCGTGCGAGAGCCTCGGGCACCATTTCCAACCTAGGCCCTTAGTCGTG-GGAGAGCCTCGG-
66 TGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG-GAGCCTCGGA
* * * * * **
11887944 CACCATCGG-TAATCTAGGCCCTGGGTCGTGCGGGAGCCTCTGGCACCATCGGC-ACCTTGGTGC
129 CACCATCGGCT-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGAACCATCGGCAACCTAGGCCC
* * * * * ** **
11888007 TTGGAT-GTGTGGGAGCCTCGGACACCATCGGTACTTTGGTGCTTGGAT-GTGCGGGAGCCTCAA
193 CTGG-TCGTGCGGGAGCCTCGG-CACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
* * *
11888070 ACACCATCGACAACCTAGGCCCCTGGCCGTGCGGGAGCCTCGGG
255 ACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * *
11888114 CACCATCGGCAACCTAGTCCCCTGGTCGTGC-AGGAGCCTCGGGCACCATCGGTAACCTAGGCCC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGA-GAGCCTCGGGCACCATCGGCAACCTAGGCCC
* * * * * * *
11888178 CTGGTCGTGTGGGAGCCTCGGGCAGCATCGGCAACCTAGGCCCCTAGTCGTGAGAGAGCCTCGG-
65 TTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
* * * * * *
11888242 GACCATCGG-TAACCTAGGCCCTTGGTCATGCGAGAGCCTCGGGCACCATCAGC-ACCTACGCCC
129 CACCATCGGCT-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGAACCATCGGCAACCTAGGCCC
* * * ** * *
11888305 TTGGTCGTGCGGGAGCCTCGGGCACCATCGACACCTTGGTGCTTGGAT-GTGGGGGAGCCTCAGA
193 CTGGTCGTGCGGGAGCCTC-GGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGA
* * ** ** *
11888369 CACCATCGG-TACTTTTGTGCTTGGAT-GTGCGGGAGCCTCGGA
256 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
* * *
11888411 CACCAACGGCAACCTAGGACCC-TGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCC
1 CACCATCGGCAACCTAGG-CCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCC
*** * * * * * *
11888475 CAAGTCGTGCAGGAGCCTCGGACACCATCGACAACCTGGGCCCTTGGTCATTCGAGAGCCTCGG-
65 TTGGTCGTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
* * * ** *
11888539 GACCATCGGTTACCTAGGCCCCTGGTCGTAAGGGAGCCTCTGGG-ACCATCGGTAACCTAGGCCC
129 CACCATCGGCTACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGGAACCATCGGCAACCTAGGCCC
* * * *
11888603 CTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGG
193 CTGGTCGTGCGGGAGCCTC-GGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
* *
11888668 CACCATCGG-AACCCTAGGTCCTTGGTCGTGCGAGAGCCTCGGG
256 CACCATCGGCAA-CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
** * * *
11888711 -ACCATCGGC-ACCTTTGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCTACCTAGGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCT
* * * * * *
11888774 TAGTCGTACGGGAGCCTCGGACACCATCGGCAACCTAGTCCCCTGGTCGTGCAGGAGCCTCGGGC
66 TGGTCGTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
* * * * *
11888839 ACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGACCCTC-GGACAGCATCGGTAACCTAGGCCCC
130 ACCATCGGCTACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGA-ACCATCGGCAACCTAGGCCCC
* * * ** * * * * *
11888903 TAGTTGTGAGAAAGCCTCGGGACCATCGGCAACCGAGGCCTTTGGTCGTGCGAGAGCCTCGGGCA
194 TGGTCGTGCGGGAGCCTCGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACA
* *
11888968 CCATCAGC-ACCTACGCCCTTGGTCGTGCGGGAGCCTCGGG
258 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* ** * * * * * * * **
11889008 CACCATCGGC-ACCTTGGTGCTTGGAT-GTGGGGGAGCTTCAGACACCATCGGC--CTTTGGTGC
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCC
* * *
11889069 TTGGAT-GTGTGGGAGCCTCGGACACCAACGGCAACCTAGGACCC-TGGTCATGCGGGAGCCTCG
65 TTGG-TCGTGCGGGAGCCTCGG-CACCATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCTCG
* * * *
11889132 GGCACCATCGGCAACCGAGGCCCTTGGTCGTGCGGGAGCCTC-GGACACCATCGACAACCTAGGC
127 GACACCATCGGCTACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGA-ACCATCGGCAACCTAGGC
* * * * *
11889196 CCCTGGTCGTCCGAGAGCCTTGGGC-CCATCGGTTACCTAGGCCCCTGGTCGTGCGGGAGCCTCT
191 CCCTGGTCGTGCGGGAGCC-TCGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTC-
* *
11889260 GG-CACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGG
253 GGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * * * * *
11889305 CACCATCGGTAACCTAGGCCCCTGGTCGTACAAGAGCCTCGGGCACCATCGGTACCCTAGGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCT
* * * *
11889370 TGGTCGTGCGGGAGCCTCGGGACCATCGGC-ACCTTGTCCCTTGGTCGTGCGAGAGCCTCGGACA
66 TGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACA
* * * * **
11889434 CCATCGGCTACCTAGGCCCTTAGTCGTACGAGAGCCTC-GGACACCATCGACAACCTAGTTCCCT
131 CCATCGGCTACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGA-ACCATCGGCAACCTAGGCCCCT
** * *
11889498 GGTCGTGTAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCA
195 GGTCGTGCGGGAGCCTC-GGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACA
** * * * * **
11889563 GTATTGGCAACCTAGGCCCCTAGTCGTGAGAAAGCCTCGGG
258 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * * *
11889604 -ACCATTGGCAACCTAGGCCTTTGGTCGTGCGAGAGCCTCGGGCACCATCAGC-ACCTACGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCT
* * * ** * *
11889667 TGGTCGTGTGGGAGCCTCGGGCACCATTGGC-ACCTTGGTGCTTGGAT-GTGGGGGAGCCTCAGA
66 TGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGA
* * ** ** * *
11889730 CACCATCGGC-ACTTTGGTGCTTGGAT-GTGCTAGAGCCTCGGGCACCATCGACAACCTAGGCCC
129 CACCATCGGCTACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGAACCATCGGCAACCTAGGCCC
* ** * * **
11889793 CTGGTCGTCCAAGAGCCTCGGTACCATCGGCTACCTAGGCCGC-TAGTCGTGCAAGAGCCTCTGG
193 CTGGTCGTGCGGGAGCCTCGGCACCATCGGC-ACCTAGGCC-CTTGGTCGTGCGGGAGCCTC-GG
* *
11889857 -CACCATCAGCAACCTAGG-CCTCTGGTCGTGCGGGAGCCTTGGG
255 ACACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGG
* * *
11889900 CACCATCGGCAACCTAGGCCCCTAGTCGTGCGAGAGCCTCGGGCACCATCGGCACCCTAGGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCT
* * * * * * *
11889965 TGGTCATGCGAGAGCCTCGGGACCATTGGC-ACCTTGGCACTTGGTCGTACGGGAGCCTCGGACA
66 TGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACA
* * * * *
11890029 CCATCGGCTA-CTAGGCCCTTGGTAGTACGGGAGCCTCGGGAAGCATCGGCAAACTAGGACCCTG
131 CCATCGGCTACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGAACCATCGGCAACCTAGGCCCCTG
* * *** *
11890093 GTCGTGCGGGAGCCTAAGGCACCATCGGCACCTTGGTGATTGGAT-GTGCGGGAGCCTTGGACAC
196 GTCGTGCGGGAGCCT-CGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACAC
* *
11890157 CCTCGGCAACCTAGGCCCTTGGTCGTTGCAGGAGCCTCGGG
259 CATCGGCAACCTAGGCCCTTGGTCG-TGCGGGAGCCTCGGG
* * * *
11890198 CACCATCGGTAACCTAGGCCATTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTTGGTGCC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGG-CCC
* * * * * * **
11890262 TCGGAT-ATGCGGGAGCCTCAAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCG
65 TTGG-TCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
* *
11890324 GACACCATAGGCAACCTAGG
127 GACACCATCGGCTACCTAGG
11890344 ACGTTGGATG
Statistics
Matches: 2328, Mismatches: 422, Indels: 152
0.80 0.15 0.05
Matches are distributed among these distances:
295 2 0.00
296 237 0.10
297 562 0.24
298 914 0.39
299 418 0.18
300 194 0.08
301 1 0.00
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.19
Consensus pattern (298 bp):
CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCT
TGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACA
CCATCGGCTACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGAACCATCGGCAACCTAGGCCCCTG
GTCGTGCGGGAGCCTCGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCA
TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
Found at i:11892764 original size:16 final size:17
Alignment explanation
Indices: 11892723--11892764 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
11892713 CCGGGGGTGA
*
11892723 GAGCCCCGCCGTGCCCG
1 GAGCCCCGTCGTGCCCG
*
11892740 GAGCCCCGTCGTGCTCG
1 GAGCCCCGTCGTGCCCG
11892757 GA-CCCCGT
1 GAGCCCCGT
11892765 TGTTTGGGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 6 0.26
17 17 0.74
ACGTcount: A:0.07, C:0.48, G:0.33, T:0.12
Consensus pattern (17 bp):
GAGCCCCGTCGTGCCCG
Found at i:11896729 original size:58 final size:59
Alignment explanation
Indices: 11896638--11896751 Score: 176
Period size: 58 Copynumber: 1.9 Consensus size: 59
11896628 CCCTCCCTAA
* *
11896638 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAATAATAAATGAACCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATAAATGAACCG
* * *
11896697 TCCC-AAAGCTAGAATTCAGATACCGTTGCATGTTTGGTGCCCAACAATAAATGAA
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATAAATGAA
11896752 TCATCCTTGT
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
58 46 0.92
59 4 0.08
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.25
Consensus pattern (59 bp):
TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATAAATGAACCG
Found at i:11899929 original size:93 final size:93
Alignment explanation
Indices: 11899770--11899940 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
11899760 GCCCATAAGT
* * *
11899770 GAACTCAGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAGTAAGCTTGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTAAGCTCGGACTCAACTCAA
11899835 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * * *
11899863 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAA-CTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGT-AAGCTCGGACTCAACTCA
*
11899927 ACGAGTTCGGATGC
65 ACGAGCTCGGATGC
11899941 TCAACCATCC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
93 67 0.97
94 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTAAGCTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:11899937 original size:46 final size:46
Alignment explanation
Indices: 11899762--11899937 Score: 164
Period size: 46 Copynumber: 3.8 Consensus size: 46
11899752 TGTAACCCGC
* * * * *
11899762 CCATAAGTGAACTCAGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* * *
11899808 CCATAAGT-AAGCTTGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAA-CTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* *
11899858 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
*
11899901 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
11899938 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 14, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 1 0.01
45 2 0.02
46 59 0.56
47 24 0.23
48 2 0.02
49 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:11905686 original size:58 final size:59
Alignment explanation
Indices: 11905595--11905714 Score: 179
Period size: 58 Copynumber: 2.1 Consensus size: 59
11905585 CCCTCCCCAA
* *
11905595 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAATAATAAATGAACCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATAAATGAACCG
* * * *
11905654 TCCC-AAAGCTAGAATTCAGATATCGTTGCATGTTCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATAAATGAACCG
11905712 TCC
1 TCC
11905715 TTGTCCCTCC
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
58 51 0.93
59 4 0.07
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.25
Consensus pattern (59 bp):
TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATAAATGAACCG
Found at i:11908661 original size:41 final size:41
Alignment explanation
Indices: 11908604--11908686 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
11908594 GACATGAGCA
11908604 AAGCATATGACTGTGTAGAGTGGAACTTCCTTGAAAAAGTT
1 AAGCATATGACTGTGTAGAGTGGAACTTCCTTGAAAAAGTT
11908645 AAGCATATGACTGTGTAGAGTGGAACTTCCTTGAAAAAGTT
1 AAGCATATGACTGTGTAGAGTGGAACTTCCTTGAAAAAGTT
11908686 A
1 A
11908687 TGAAGAAGAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (41 bp):
AAGCATATGACTGTGTAGAGTGGAACTTCCTTGAAAAAGTT
Found at i:11911287 original size:43 final size:43
Alignment explanation
Indices: 11911240--11912058 Score: 912
Period size: 43 Copynumber: 19.2 Consensus size: 43
11911230 TGGATATGCA
* * *
11911240 GGAGCCTCGGAAACCATCGGCAACTTAGGTCCC-CGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGG-CCCTTGGTCGTGCG
*
11911283 GGAGCCTCAGG-CACCATCGGCAACCAAGGCCCTTGGTCGTGCG
1 GGAGCCTC-GGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
11911326 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
11911369 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
11911412 AGAGCCTCGG-CACCATCGGTAACCTATGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
11911454 GGAGCCTTGGACACCATCGGCAACCTATGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
11911497 GGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCATACA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
11911539 GGAGCCTCGGACACCAACGGCACCCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
11911582 GGAGCCTCGGACACCATCGGCACCCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
11911625 GGAGCCTCGGACACCATCGGCAACCTAGTCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
11911668 AGAGCCTCGG-GAGCATCGGC-ACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * **
11911709 GGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * * *
11911751 GGAGCCTCAGACACCACCGGTAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
** * **
11911794 GGAGCCTCGGGTACCATCGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* *
11911836 AGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCC
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
11911879 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * * * * *
11911922 GGAGCCTAGGGCACCATTGGC-ACCTTGGTGCCTCAGAT-GTACG
1 GGAGCCTCGGACACCATCGGCAACCTAGG-CCCT-TGGTCGTGCG
* * * * **
11911965 GGAGCCTCGAACAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * *
11912007 GGAGCCTCGGACACCATAGGCAACCTAGGACGTTGGAT-GTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
*
11912050 GGTGCCTCG
1 GGAGCCTCG
11912059 AGCAGCAGGG
Statistics
Matches: 667, Mismatches: 93, Indels: 32
0.84 0.12 0.04
Matches are distributed among these distances:
41 29 0.04
42 194 0.29
43 440 0.66
44 4 0.01
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (43 bp):
GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
Found at i:11911469 original size:85 final size:85
Alignment explanation
Indices: 11911240--11911938 Score: 863
Period size: 85 Copynumber: 8.2 Consensus size: 85
11911230 TGGATATGCA
* * * * *
11911240 GGAGCCTCGGAAACCATCGGCAACTTAGGTCCC-CGGTCGTGCGGGAGCCTCAGGCACCATCGGC
1 GGAGCCTCGG-CACCATCGGTAACCTAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
*
11911304 AACCAAGGCCCTTGGTCGTGCG
64 AACCTAGGCCCTTGGTCGTGCG
11911326 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 GGAGCCTC-GGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
11911391 ACCTAGGCCCTTGGTCGTGCG
65 ACCTAGGCCCTTGGTCGTGCG
* * * *
11911412 AGAGCCTCGGCACCATCGGTAACCTATGCCCTTGGTCGTGCGGGAGCCTTGGACACCATCGGCAA
1 GGAGCCTCGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
*
11911477 CCTATGCCCTTGGTCGTGCG
66 CCTAGGCCCTTGGTCGTGCG
* * * * * *
11911497 GGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCATACAGGAGCCTCGGACACCAACGGCA
1 GGAGCCTC-GGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* *
11911561 CCCTAGGCCCCTGGTCGTGCG
65 ACCTAGGCCCTTGGTCGTGCG
* * * *
11911582 GGAGCCTCGGACACCATCGGCACCCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCA
1 GGAGCCTCGG-CACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* *
11911647 ACCTAGTCCCCTGGTCGTGCG
65 ACCTAGGCCCTTGGTCGTGCG
* * * *
11911668 AGAGCCTCGGGAGCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-A
1 GGAGCCTCGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
* **
11911731 CCTTGGTGCTTGGAT-GTGCG
66 CCTAGGCCCTTGG-TCGTGCG
* * * *
11911751 GGAGCCTCAGACACCACCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGTACCATCGGC-
1 GGAGCCTC-GGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* **
11911815 ACCTTGGTGCTTGGAT-GTGCG
65 ACCTAGGCCCTTGG-TCGTGCG
* * * *
11911836 AGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCCGGAGCCTCGGGCACCATCGGTA
1 GGAGCCTCGG-CACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
11911901 ACCTAGGCCCTTGGTCGTGCG
65 ACCTAGGCCCTTGGTCGTGCG
*
11911922 GGAGCCTAGGGCACCAT
1 GGAGCCT-CGGCACCAT
11911939 TGGCACCTTG
Statistics
Matches: 537, Mismatches: 64, Indels: 24
0.86 0.10 0.04
Matches are distributed among these distances:
83 21 0.04
84 50 0.09
85 278 0.52
86 184 0.34
87 4 0.01
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.17
Consensus pattern (85 bp):
GGAGCCTCGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
CCTAGGCCCTTGGTCGTGCG
Found at i:11911479 original size:128 final size:127
Alignment explanation
Indices: 11911240--11912035 Score: 881
Period size: 128 Copynumber: 6.2 Consensus size: 127
11911230 TGGATATGCA
* * * *
11911240 GGAGCCTCGGAAACCATCGGCAACTTAGGTCCC-CGGTCGTGCGGGAGCCTCAGGCACCATCGGC
1 GGAGCCTCGGACACCATCGGCAACCTAGG-CCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGG-
* * *
11911304 AACCAAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
63 AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
11911369 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGTAA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGG-AA
* * *
11911434 CCTATGCCCTTGGTCGTGCGGGAGCCTTGGACACCATCGGCAACCTATGCCCTTGGTCGTGCG
65 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
11911497 GGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCATAC-AGGAGCCTCGGACACCAACGGC
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGA-GAGCCTCGG-CACCATCGG-
* * * *
11911560 ACCCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCCTAGGCCCCTGGTCGTGCG
63 AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * *
11911625 GGAGCCTCGGACACCATCGGCAACCTAGTCCCCTGGTCGTGCGAGAGCCTCGGGAGCATCGGCAC
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGAAC
* * **
11911690 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCG
66 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * * * * * *
11911751 GGAGCCTCAGACACCACCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGTACCATCGGCA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGAA
* ** * *
11911816 CCTTGGTGCTTGGAT-GTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCC
65 CCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * * *
11911879 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTAGGGCACCATTGGCA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCT-CGGCACCATCGGAA
* * * * * * * * * **
11911944 CCTTGGTGCCTCAGAT-GTACGGGAGCCTCGAACAGCATTGGC-ACCTTGGTGCTTGGAT-GTGC
65 CCTAGG-CCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGC
11912006 G
127 G
*
11912007 GGAGCCTCGGACACCATAGGCAACCTAGG
1 GGAGCCTCGGACACCATCGGCAACCTAGG
11912036 ACGTTGGATG
Statistics
Matches: 574, Mismatches: 79, Indels: 29
0.84 0.12 0.04
Matches are distributed among these distances:
126 61 0.11
127 113 0.20
128 306 0.53
129 92 0.16
130 2 0.00
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (127 bp):
GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGAAC
CTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
Found at i:11912049 original size:128 final size:128
Alignment explanation
Indices: 11911192--11912094 Score: 777
Period size: 128 Copynumber: 7.1 Consensus size: 128
11911182 GACATCAGTG
* * * * * *
11911192 GTGCGAGAGCCTC-GAGCAGCATTGGCACCTTGGTGCCTTGGATATGCAGGAGCCTCGGAAACCA
1 GTGCGGGAGCCTCGGA-CACCATCGGCACCTTGGTG-CTTGGATGTGCGGGAGCCTCGGACACCA
* * ** * *
11911256 TCGGCAACTTAGGTCCCC-GGTCGTGCGGGAGCCTCAGGCACCATCGGCAACCAAGG-CCCTTGG
64 TCGGCAACCTAGG-CCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTCGG
11911319 -T
127 AT
* * * ** *
11911320 CGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACC
1 -GTGCGGGAGCCTCGGACACCATCGG-CACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACC
* * * * *
11911384 ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGTAACCTAT-G-CCCTTG
63 ATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCT-TGGTGCCTCG
11911446 G-T
126 GAT
* ** *
11911448 CGTGCGGGAGCCTTGGACACCATCGGCAACCTAT-GCCCTTGG-TCGTGCGGGAGCCTCGGGCAC
1 -GTGCGGGAGCCTCGGACACCATCGGC-ACCT-TGGTGCTTGGAT-GTGCGGGAGCCTCGGACAC
* * * * * * * * *
11911511 CATCGGC-ACCTAGGCCCTTGGTCATACAGGAGCCTCGGACACCAACGGCACCCTAG-GCCCCTG
62 CATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTC-G
11911574 G-T
126 GAT
* ** *
11911576 CGTGCGGGAGCCTCGGACACCATCGGCACCCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGACACC
1 -GTGCGGGAGCCTCGGACACCATCGGCA-CCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACC
* * * * * *
11911640 ATCGGCAACCTAGTCCCCTGGTCGTGCGAGAGCCTCGGG-AGCATCGGCACCTAGG-CCCTTGG-
63 ATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGGA
11911702 T
128 T
* * *
11911703 CGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCAGACACCAC
1 -GTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCAT
* * *
11911768 CGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGTACCATCGGCACCTTGGTG-CTTGGAT
65 CGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGGAT
* * ** * *
11911831 GTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCCGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGACACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCA
* * * * *
11911895 TCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTAGGGCACCATTGGCACCTTGGTGCCTCAGAT
64 TCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGGAT
* * * * *
11911960 GTACGGGAGCCTCGAACAGCATTGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATA
1 GTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATC
* ** * * * ** *
11912025 GGCAACCTAGGACGTTGGAT-GTGCGGGTGCCTCGAGCAGCAGGGGCACCCTGGTGCCTCGGAT
66 GGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGGAT
11912088 GTGCGGG
1 GTGCGGG
11912095 CTAAAGAAAA
Statistics
Matches: 648, Mismatches: 103, Indels: 47
0.81 0.13 0.06
Matches are distributed among these distances:
126 64 0.10
127 107 0.17
128 348 0.54
129 122 0.19
130 7 0.01
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (128 bp):
GTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATC
GGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGGAT
Found at i:11912057 original size:85 final size:85
Alignment explanation
Indices: 11911192--11912094 Score: 812
Period size: 85 Copynumber: 10.6 Consensus size: 85
11911182 GACATCAGTG
* * * * * * *
11911192 GTGCGAGAGCCTCGAGCAGCATTGGCACCTTGGTGCCTTGGATATGCAGGAGCCTCGGAAACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG-CTTGGATGTGCGGGAGCCTCGGACACCAT
* *
11911257 CGGCAACTTAGGTCCC-CGGTC
65 CGGCAACCTAGG-CCCTTGGTC
* ** ** *
11911278 GTGCGGGAGCCTCAGGCACCATCGGCAACCAAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCA
*
11911342 TCGGTAACCTAGGCCCTTGGTC
64 TCGGCAACCTAGGCCCTTGGTC
* ** *
11911364 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGG-CACCA
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCA
* *
11911427 TCGGTAACCTATGCCCTTGGTC
64 TCGGCAACCTAGGCCCTTGGTC
* * ** *
11911449 GTGCGGGAGCCTTGGACACCATCGGCAACCTAT-GCCCTTGG-TCGTGCGGGAGCCTCGGGCACC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCT-TGGTGCTTGGAT-GTGCGGGAGCCTCGGACACC
11911512 ATCGGC-ACCTAGGCCCTTGGTC
63 ATCGGCAACCTAGGCCCTTGGTC
* * * * * * ** *
11911534 ATACAGGAGCCTCGGACACCAACGGCACCCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGACACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCA-CCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCA
* *
11911598 TCGGCACCCTAGGCCCCTGGTC
64 TCGGCAACCTAGGCCCTTGGTC
* * * * * * *
11911620 GTGCGGGAGCCTCGGACACCATCGGCAACC-TAGTCCCCTGG-TCGTGCGAGAGCCTCGG-GAGC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGT-GCTTGGAT-GTGCGGGAGCCTCGGACACC
11911682 ATCGGC-ACCTAGGCCCTTGGTC
63 ATCGGCAACCTAGGCCCTTGGTC
* *
11911704 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCAGACACCACC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATC
* *
11911769 GGTAACCTAGGCCCCTGGTC
66 GGCAACCTAGGCCCTTGGTC
* *
11911789 GTGCGGGAGCCTCGGGTACCATCGGCACCTTGGTGCTTGGATGTGCGAGAGCCTCGGACACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATC
11911854 GGCAACCTAGGCCCTTGGTC
66 GGCAACCTAGGCCCTTGGTC
* * * ** * *
11911874 GTGCCGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGG-TCGTGCGGGAGCCTAGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCA
* * * * *
11911938 TTGGC-ACCTTGGTGCCTCAGAT-
64 TCGGCAACCTAGG-CCCT-TGGTC
* ** * * *
11911960 GTACGGGAGCCTCGAACAGCATTGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATA
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATC
* *
11912025 GGCAACCTAGGACGTTGGAT-
66 GGCAACCTAGGCCCTTGG-TC
* * * ** * *
11912045 GTGCGGGTGCCTCGAGCAGCAGGGGCACCCTGGTGCCTCGGATGTGCGGG
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG-CTTGGATGTGCGGG
11912095 CTAAAGAAAA
Statistics
Matches: 691, Mismatches: 104, Indels: 44
0.82 0.12 0.05
Matches are distributed among these distances:
83 20 0.03
84 51 0.07
85 355 0.51
86 257 0.37
87 8 0.01
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (85 bp):
GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATC
GGCAACCTAGGCCCTTGGTC
Found at i:11912088 original size:43 final size:43
Alignment explanation
Indices: 11911917--11912094 Score: 146
Period size: 43 Copynumber: 4.2 Consensus size: 43
11911907 GCCCTTGGTC
* * * * * *
11911917 GTGCGGGAGCCTAGGGCACCATTGGCACCTTGGTGCCTCAGAT
1 GTGCGGGAGCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGAT
* * * * *
11911960 GTACGGGAGCCTCGAACAGCATTGGCACCTTGGTG-CTTGGAT
1 GTGCGGGAGCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGAT
* * * * *
11912002 GTGCGGGAGCCTCG-GACACCATAGGCAACCTAGG-ACGTTGGAT
1 GTGCGGGAGCCTCGAG-CAGCATAGGCACCCT-GGTGCCTCGGAT
* **
11912045 GTGCGGGTGCCTCGAGCAGCAGGGGCACCCTGGTGCCTCGGAT
1 GTGCGGGAGCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGAT
11912088 GTGCGGG
1 GTGCGGG
11912095 CTAAAGAAAA
Statistics
Matches: 107, Mismatches: 23, Indels: 10
0.76 0.16 0.07
Matches are distributed among these distances:
42 31 0.29
43 75 0.70
44 1 0.01
ACGTcount: A:0.17, C:0.26, G:0.38, T:0.19
Consensus pattern (43 bp):
GTGCGGGAGCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGAT
Found at i:11920315 original size:12 final size:12
Alignment explanation
Indices: 11920298--11920322 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
11920288 CTGGTAGCCT
11920298 GGTAGTAGCAGC
1 GGTAGTAGCAGC
11920310 GGTAGTAGCAGC
1 GGTAGTAGCAGC
11920322 G
1 G
11920323 TGATTTCTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.16, G:0.44, T:0.16
Consensus pattern (12 bp):
GGTAGTAGCAGC
Found at i:11926093 original size:37 final size:37
Alignment explanation
Indices: 11926040--11926142 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
11926030 CGAATAGTCC
*
11926040 CCACACGTAGTTATCGGGTCTTACCCGGACAAAACCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAACCT
* * *
11926077 CCACACATAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAACCT
11926114 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
11926143 ATATATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.22
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAACCT
Found at i:11926341 original size:48 final size:48
Alignment explanation
Indices: 11926283--11926722 Score: 718
Period size: 48 Copynumber: 9.0 Consensus size: 48
11926273 ATATACACAC
*
11926283 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
11926331 ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
11926379 ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
11926427 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
11926477 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
11926525 ATCTCATAAATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCAT--ACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
11926575 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
11926623 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
11926673 ATCTCATACATATTTCACACTAGCCATTCAGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
11926721 AT
1 AT
11926723 ATTTATCTTG
Statistics
Matches: 368, Mismatches: 18, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
48 231 0.63
50 137 0.37
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:11926453 original size:146 final size:144
Alignment explanation
Indices: 11926283--11926722 Score: 711
Period size: 146 Copynumber: 3.0 Consensus size: 144
11926273 ATATACACAC
*
11926283 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
11926348 CACTAGCCATTCGACTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGACTT
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGACTT
11926413 TACCACATATACAT
131 TACCACATATACAT
* *
11926427 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
1 ATCTC--ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
* *
11926492 CACACTAGCCATTCGGCTTTACCACATATACATATCTCATAAATATATTTCACATTAGCCATTCG
64 CACACTAGCCATTCGGCTTTACCACATATACATATCTCAT--ACATATTTCACACTAGCCATTCG
*
11926557 GCTTTACCACATATACAT
127 ACTTTACCACATATACAT
*
11926575 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTT
*
11926640 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTC-AG
64 CACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGA-
* *
11926704 CTTTACCACACATATAT
128 CTTTACCACATATACAT
11926721 AT
1 AT
11926723 ATTTATCTTG
Statistics
Matches: 273, Mismatches: 16, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
144 5 0.02
146 177 0.65
148 91 0.33
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (144 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGACTT
TACCACATATACAT
Found at i:11926470 original size:98 final size:98
Alignment explanation
Indices: 11926283--11926722 Score: 785
Period size: 98 Copynumber: 4.5 Consensus size: 98
11926273 ATATACACAC
* *
11926283 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
* *
11926346 CACACTAGCCATTCGACTTTACCACATATACAT
66 CACATTAGCCATTCGGCTTTACCACATATACAT
*
11926379 ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCATATATATATTT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
11926444 CACATTAGCCATTCGGCTTTACCACATATACAT
66 CACATTAGCCATTCGGCTTTACCACATATACAT
*
11926477 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAAATATATTT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
11926542 CACATTAGCCATTCGGCTTTACCACATATACAT
66 CACATTAGCCATTCGGCTTTACCACATATACAT
11926575 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
11926640 CACATTAGCCATTCGGCTTTACCACATATACAT
66 CACATTAGCCATTCGGCTTTACCACATATACAT
* * *
11926673 ATCTCATACATATTTCACACTAGCCATTCAGCTTTACCACACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
11926723 ATTTATCTTG
Statistics
Matches: 331, Mismatches: 11, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
96 51 0.15
98 280 0.85
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (98 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
CACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:11931032 original size:58 final size:59
Alignment explanation
Indices: 11930941--11931061 Score: 190
Period size: 58 Copynumber: 2.1 Consensus size: 59
11930931 CCCTCCCCAA
* *
11930941 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAATAATGAATAAACCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATAAACCG
* * *
11931000 TCCC-AAAGCTAGAATTCAGATACCGTTGCATGTTCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATAAACCG
11931058 TCCC
1 TCCC
11931062 TGTCCTCCCC
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 53 0.93
59 4 0.07
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATAAACCG
Found at i:11931847 original size:43 final size:43
Alignment explanation
Indices: 11931813--11932555 Score: 889
Period size: 43 Copynumber: 17.4 Consensus size: 43
11931803 TGGATATGCA
*
11931813 GGAGCCTCGGACACCATCAGCAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
11931856 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCATGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
11931899 GGAGCCTCGGGCACCATCAGCAACCTAGACCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
11931942 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
11931985 AGAGCCTCGG-CACCATCGACAACCTATGCCCTTGGTCGTACG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
11932027 GGAGCCTCGGGCACCATTGGC-ACCTAGGCCCTTGGTTGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
11932069 GGAGCCTCGGACACCATCGG-TACTCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAAC-CTAGGCCCTTGGTCGTGCG
* * * *
11932112 AGAGCCTCGGACACCATCGGTACCCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
11932155 GGAGCCTCGAACACCATCGGTAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
11932198 GGAGCCTCGG-GACCATCGGC-ACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * **
11932239 GGAGACTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* *
11932281 GGAGCCTCGGACACCATCGGTAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * **
11932324 GGAGCCTCGGGCCCCATCGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * * * *
11932366 GGAGCCTCGGACAACATTGGTAACCTAGGCCCCTGGTCGTGTG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* ** *
11932409 GGAGCCTC-GAGCACCATCGGC-ACCTTGGTACTTGGAT-GTACG
1 GGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
** *
11932451 GGAGCCTCGGACACCATCGAAAACCTAGGCCCTTGGTCGTGCC
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
11932494 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
11932537 GGAGCCTCGGGCACCATCG
1 GGAGCCTCGGACACCATCG
11932556 ATACCTTGGT
Statistics
Matches: 601, Mismatches: 83, Indels: 32
0.84 0.12 0.04
Matches are distributed among these distances:
41 29 0.05
42 191 0.32
43 380 0.63
44 1 0.00
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (43 bp):
GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
Found at i:11932084 original size:85 final size:85
Alignment explanation
Indices: 11931813--11932555 Score: 885
Period size: 85 Copynumber: 8.7 Consensus size: 85
11931803 TGGATATGCA
*
11931813 GGAGCCTCGGACACCATCAGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-A
*
11931878 ACCTAGGCCCTTGGTCATGCG
65 ACCTAGGCCCTTGGTCGTGCG
* * *
11931899 GGAGCCTCGGGCACCATCAGCAACCTAGACCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-A
11931964 ACCTAGGCCCTTGGTCGTGCG
65 ACCTAGGCCCTTGGTCGTGCG
* * * * * *
11931985 AGAGCCTCGG-CACCATCGACAACCTATGCCCTTGGTCGTACGGGAGCCTCGGGCACCATTGGCA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAA
*
11932049 CCTAGGCCCTTGGTTGTGCG
66 CCTAGGCCCTTGGTCGTGCG
* * * *
11932069 GGAGCCTCGGACACCATCGG-TACTCTAGGCCCCTGGTCGTGCGAGAGCCTCGGACACCATCGGT
1 GGAGCCTCGGACACCATCGGCAAC-CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-
* *
11932133 ACCCTAGGCCCCTGGTCGTGCG
64 AACCTAGGCCCTTGGTCGTGCG
* * * *
11932155 GGAGCCTCGAACACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGG-ACCATCGGCA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAA
11932219 CCTAGGCCCTTGGTCGTGCG
66 CCTAGGCCCTTGGTCGTGCG
* * * ** *
11932239 GGAGACTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGT
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG-
*
11932302 AACCTAGGCCCCTGGTCGTGCG
64 AACCTAGGCCCTTGGTCGTGCG
* * * ** * * *
11932324 GGAGCCTCGGGCCCCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACAACATTGGT
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG-
* *
11932387 AACCTAGGCCCCTGGTCGTGTG
64 AACCTAGGCCCTTGGTCGTGCG
* ** * *
11932409 GGAGCCTC-GAGCACCATCGGC-ACCTTGGTACTTGGAT-GTACGGGAGCCTCGGACACCATCGA
1 GGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCG-
* *
11932471 AAACCTAGGCCCTTGGTCGTGCC
63 GAACCTAGGCCCTTGGTCGTGCG
* *
11932494 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
11932556 ATACCTTGGT
Statistics
Matches: 579, Mismatches: 66, Indels: 24
0.87 0.10 0.04
Matches are distributed among these distances:
83 25 0.04
84 77 0.13
85 285 0.49
86 190 0.33
87 2 0.00
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (85 bp):
GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAA
CCTAGGCCCTTGGTCGTGCG
Found at i:11932605 original size:43 final size:42
Alignment explanation
Indices: 11932193--11932638 Score: 148
Period size: 43 Copynumber: 10.5 Consensus size: 42
11932183 GCCCCTGGTC
* * *
11932193 GTGCGGGAGCCTCG-GGACCATCGGCACC-TAG-GCCCTTGG-T
1 GTGCGGGAGCCTCGAGCACCATCGACACCTTAGTG--CTCGGAT
* * * * *
11932233 CGTGCGGGAGACTCGGGCACCATCGGCACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGAGCACCATCGACACCTTAGTGCTCGGAT
*
11932276 GTGCGGGAGCCTCG-GACACCATCGGTA-ACC-TAG-GCCCCTGG-T
1 GTGCGGGAGCCTCGAG-CACCATC-G-ACACCTTAGTG-CTC-GGAT
* * * * *
11932318 CGTGCGGGAGCCTCGGGCCCCATCGGCACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGAGCACCATCGACACCTTAGTGCTCGGAT
* * *
11932361 GTGCGGGAGCCTCG-GACAACATTGGTA-ACC-TAG-GCCCCTGG-T
1 GTGCGGGAGCCTCGAG-CACCA-TCG-ACACCTTAGTG-CTC-GGAT
* * * * *
11932403 CGTGTGGGAGCCTCGAGCACCATCGGCACCTTGGTACTTGGAT
1 -GTGCGGGAGCCTCGAGCACCATCGACACCTTAGTGCTCGGAT
* * *
11932446 GTACGGGAGCCTCG-GACACCATCGAAAACC-TAG-GCCCTTGG-T
1 GTGCGGGAGCCTCGAG-CACCATCG-ACACCTTAGTG--CTCGGAT
* * *
11932488 CGTGCCGGAGCCTCGGGCACCATCGGTA-ACC-TAG-GCCCTTGG-T
1 -GTGCGGGAGCCTCGAGCACCATC-G-ACACCTTAGTG--CTCGGAT
* * *
11932531 CGTGCGGGAGCCTCGGGCACCATCGATACCTTGGTGCCTCGGAT
1 -GTGCGGGAGCCTCGAGCACCATCGACACCTTAGTG-CTCGGAT
* * * *
11932575 GTGCGGGAGCCTCGAGCAGCATTTG-CACCTTAGTGTTTGGAT
1 GTGCGGGAGCCTCGAGCACCA-TCGACACCTTAGTGCTCGGAT
*
11932617 GTGTGGGAGCCTC-AGACACCAT
1 GTGCGGGAGCCTCGAG-CACCAT
11932639 AGGCAACCTA
Statistics
Matches: 317, Mismatches: 49, Indels: 78
0.71 0.11 0.18
Matches are distributed among these distances:
41 22 0.07
42 124 0.39
43 160 0.50
44 11 0.03
ACGTcount: A:0.16, C:0.30, G:0.34, T:0.20
Consensus pattern (42 bp):
GTGCGGGAGCCTCGAGCACCATCGACACCTTAGTGCTCGGAT
Found at i:11938190 original size:14 final size:15
Alignment explanation
Indices: 11938171--11938199 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
11938161 TTGTAGTGTC
11938171 GCCTGGTA-GCAGCG
1 GCCTGGTACGCAGCG
11938185 GCCTGGTACGCAGCG
1 GCCTGGTACGCAGCG
11938200 TGTTTGTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.14, C:0.31, G:0.41, T:0.14
Consensus pattern (15 bp):
GCCTGGTACGCAGCG
Found at i:11943599 original size:43 final size:43
Alignment explanation
Indices: 11943518--11943835 Score: 371
Period size: 43 Copynumber: 7.4 Consensus size: 43
11943508 ACGTCAGTGG
* * * *
11943518 TGCGAGAGCCTC-GAGCAGCATCGGCAA-CTTGGTGCCTTGGAT-A
1 TGCGGGAGCCTCGGA-CACCATCGGCAACCTAGG-CCCTTGG-TCA
*
11943561 TGCAGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCA
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCA
* * *
11943604 TACGGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGTCG
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCA
* * *
11943647 TGCGGGAGCTTCGGGCACCATCGGTAACCTAGGCCCTTGGTCA
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCA
* *
11943690 TGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT-A
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCA
* *
11943732 GTGCGGGAGCCTCGAACACCATCGGTAACCTAGGCCCTTGGT-A
1 -TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCA
* *
11943775 GTGCGGGAGCCTCGAGA-ACCATCGAC-ACCTAGGCCCTTGGTCG
1 -TGCGGGAGCCTCG-GACACCATCGGCAACCTAGGCCCTTGGTCA
*
11943818 TGCGGGAGCCTCAGACAC
1 TGCGGGAGCCTCGGACAC
11943836 TGCCAGGGGT
Statistics
Matches: 242, Mismatches: 26, Indels: 15
0.86 0.09 0.05
Matches are distributed among these distances:
41 2 0.01
42 31 0.13
43 202 0.83
44 7 0.03
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.18
Consensus pattern (43 bp):
TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCA
Found at i:11945509 original size:58 final size:59
Alignment explanation
Indices: 11945418--11945537 Score: 188
Period size: 58 Copynumber: 2.1 Consensus size: 59
11945408 CCCTCCCCAA
* * *
11945418 TCCCAAAAGGTAGAATTCAGATACTGTTACATGTTCGGTACCCAATAATGAATGAACCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCG
* *
11945477 TCCC-AAAGCTAGAATTCAGATACCGTTGCATGTTCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCG
11945535 TCC
1 TCC
11945538 TTGTCCCTCC
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 52 0.93
59 4 0.07
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.25
Consensus pattern (59 bp):
TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCG
Found at i:11945826 original size:13 final size:13
Alignment explanation
Indices: 11945808--11945832 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11945798 CATGAATGTT
11945808 GCCTGGTAGCGTC
1 GCCTGGTAGCGTC
11945821 GCCTGGTAGCGT
1 GCCTGGTAGCGT
11945833 GATTTTTCTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.28, G:0.40, T:0.24
Consensus pattern (13 bp):
GCCTGGTAGCGTC
Found at i:11951676 original size:128 final size:128
Alignment explanation
Indices: 11951496--11952159 Score: 752
Period size: 128 Copynumber: 5.2 Consensus size: 128
11951486 TGGATATGCA
* * * *
11951496 GGAGCCTCGGACACCATCGGCAACCTAGACCCTTGGTCGTGC-AGGAGCCTCGGGCACCATCGGT
1 GGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGA-GAGCCTCGGACACCATCGGC
* *
11951560 AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATTGGCAACCTAGGCCCTTGGTCGTGCG
64 AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
* * * *
11951625 AGAGCCTC-GGTACCATCGGTAACCTATGCCCTTGGTCGTGCGAGAGCCTCGGACACCATCAGCA
1 GGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCATCGGCA
*
11951689 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCG
65 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
* * * * * *
11951752 GGAGCCTCAGACACCATCGGCACCCTAGGCCCCTGGTCGTGCGGGAGCCTTGGACACCATCGGCA
1 GGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCATCGGCA
* * * * *** * * * *
11951817 CCCTAGGCCCCTGGTCGTACGAGAGCCTCAAACACCATTGGTAACCTAAGCCCCTGATCGTGCG
65 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
* * *
11951881 GGAGCCTCGGG-ACCATCGGCACCTAGGCCCTTGGTCGTGC-AGGAGCCTCGGCCACCATCGAC-
1 GGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGA-GAGCCTCGGACACCATCGGCA
* ** * * *
11951943 ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGTAACCTAGGCCCCTGGTCATGCG
65 ACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
* * * ** * *
11952007 GGAGCCTCGGGCACCATCAGCACCTTGGTACTTGGAT-GTACG-GAAGCCTCGTACACCATCGGC
1 GGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGG-TCGTGCGAG-AGCCTCGGACACCATCGGC
* * *
11952070 AACCTAGGCCCTTGGTTGTGCCGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTACG
64 AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
* *
11952135 AGAGCCTCGGGCACCATCGGCACCT
1 GGAGCCTCGGGCACCATCGGAACCT
11952160 TGGTGCCTCG
Statistics
Matches: 451, Mismatches: 73, Indels: 23
0.82 0.13 0.04
Matches are distributed among these distances:
126 61 0.14
127 103 0.23
128 252 0.56
129 35 0.08
ACGTcount: A:0.17, C:0.34, G:0.30, T:0.18
Consensus pattern (128 bp):
GGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCATCGGCAA
CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
Found at i:11951682 original size:85 final size:85
Alignment explanation
Indices: 11951497--11952154 Score: 720
Period size: 85 Copynumber: 7.7 Consensus size: 85
11951487 GGATATGCAG
* *
11951497 GAGCCTCGGACACCATCGGCAACCTAGACCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGTAA
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGTAA
*
11951562 CCTAGGCCCTTGGTCGTGCGG
65 CCTAGGCCCTTGGTCGTGCGA
* * * *
11951583 GAGCCTCGGGCACCATTGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGTACCATCGGTAAC
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGTAAC
*
11951648 CTATGCCCTTGGTCGTGCGA
66 CTAGGCCCTTGGTCGTGCGA
* *
11951668 GAGCCTCGGACACCATCAGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CA
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGTAA
*
11951732 CCTAGGCCCTTGGTCGTGCGG
65 CCTAGGCCCTTGGTCGTGCGA
* * * * * *
11951753 GAGCCTCAGACACCATCGGCACCCTAGGCCCCTGGTCGTGCGGGAGCCTTGGACACCATCGGCAC
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACCATCGGTAA
* *
11951818 CCTAGGCCCCTGGTCGTACGA
65 CCTAGGCCCTTGGTCGTGCGA
** * * * * * * *
11951839 GAGCCTCAAACACCATTGGTAACCTAAGCCCCTGATCGTGCGGGAGCCTCGGGACCATCGG-CAC
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGTAAC
11951903 CTAGGCCCTTGGTCGTGC-A
66 CTAGGCCCTTGGTCGTGCGA
* * * **
11951922 GGAGCCTCGGCCACCATCGAC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGT
1 -GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG-CACCATCGGT
* * *
11951985 AACCTAGGCCCCTGGTCATGCGG
63 AACCTAGGCCCTTGGTCGTGCGA
* * * ** * * * *
11952008 GAGCCTCGGGCACCATCAGC-ACCTTGGTACTTGGAT-GTACGGAAGCCTCGTACACCATCGGCA
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG-GCACCATCGGTA
*
11952071 ACCTAGGCCCTTGGTTGTGCCG-
64 ACCTAGGCCCTTGGTCGTG-CGA
* * * *
11952093 GAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATCGG
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGG
11952155 CACCTTGGTG
Statistics
Matches: 485, Mismatches: 74, Indels: 26
0.83 0.13 0.04
Matches are distributed among these distances:
83 24 0.05
84 42 0.09
85 267 0.55
86 151 0.31
87 1 0.00
ACGTcount: A:0.17, C:0.34, G:0.31, T:0.18
Consensus pattern (85 bp):
GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGTAAC
CTAGGCCCTTGGTCGTGCGA
Found at i:11952212 original size:128 final size:128
Alignment explanation
Indices: 11951577--11952302 Score: 543
Period size: 128 Copynumber: 5.7 Consensus size: 128
11951567 GCCCTTGGTC
* * * *
11951577 GTGCGGGAGCCTCGGGCACCATTGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGTACCAT
1 GTGCGGGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
* * * * * * * **
11951641 CGGTAACCTAT-G-CCCTTGG-TCGTGC-GAGAGCCTCGGACACCATCAGCAACCTAGGCCCTTG
66 CGG-CACCT-TGGTGCCTCGGAT-GTACGGA-AGCCTCGCACACCATCGGC-ACCTTGGTGCTTG
11951702 G-T
126 GAT
* * * * *
11951704 CGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCAGACACCA
1 -GTGCGGGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCA
* * * * * * * * ** *
11951768 TCGGCACCCTAG-GCCCCTGG-TCGTGCGGGAGCCTTGGACACCATCGGCACCCTAGGCCCCTGG
65 TCGGCACCTTGGTGCCTC-GGAT-GTACGGAAGCCTCGCACACCATCGGCA-CCTTGGTGCTTGG
11951831 -T
127 AT
* * ** * * * * *
11951832 CGTACGAGAGCCTCAAACACCATTGGTAACCTAAGCCCCTGATCGTGCGGGAGCCTCGGG-ACCA
1 -GTGCGGGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCA
* * * * *
11951896 TCGGCACCTAGG-CCCTTGG-TCGTGCAGG-AGCCTCGGC-CACCATCGACACCTTGGTGCTTGG
65 TCGGCACCTTGGTGCCTCGGAT-GTAC-GGAAGCCTC-GCACACCATCGGCACCTTGGTGCTTGG
11951957 AT
127 AT
* * *
11951959 GTGCGGGAGCCTCGGACACCATCGGTAACCTAGGCCCCTGGTCATGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
* * * * * ** *
11952024 CAGCACCTTGGT-ACTTGGATGTACGGAAGCCTCGTACACCATCGGCAACCTAGGCCCTTGGTT
66 CGGCACCTTGGTGCCTCGGATGTACGGAAGCCTCGCACACCATCGGC-ACCTTGGTGCTTGGAT
* * *
11952087 GTGCCGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
* * * *
11952152 CGGCACCTTGGTGCCTCGGATGTACGGGAGTCTC-CAGCAGCATTGGCACCTTGGTGCTTGGAT
66 CGGCACCTTGGTGCCTCGGATGTACGGAAGCCTCGCA-CACCATCGGCACCTTGGTGCTTGGAT
* * * * * * *
11952215 GTGCGGGAGCCTCGGACACCATAGGCAACCTAGGACATTGGAT-GTGCGAGTGCCTCGAGCAGCA
1 GTGCGGGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCA
** *
11952279 GGGGCACCCTGGTGCCTCGGATGT
65 TCGGCACCTTGGTGCCTCGGATGT
11952303 GCGGCCTAAA
Statistics
Matches: 492, Mismatches: 88, Indels: 36
0.80 0.14 0.06
Matches are distributed among these distances:
126 64 0.13
127 96 0.20
128 278 0.57
129 54 0.11
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.19
Consensus pattern (128 bp):
GTGCGGGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
CGGCACCTTGGTGCCTCGGATGTACGGAAGCCTCGCACACCATCGGCACCTTGGTGCTTGGAT
Found at i:11952262 original size:43 final size:43
Alignment explanation
Indices: 11951496--11952248 Score: 776
Period size: 43 Copynumber: 17.7 Consensus size: 43
11951486 TGGATATGCA
* *
11951496 GGAGCCTCGGACACCATCGGCAACCTAGACCCTTGGTCGTGCA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
11951539 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
11951582 GGAGCCTCGGGCACCATTGGCAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
11951625 AGAGCCTCGG-TACCATCGGTAACCTATGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
11951667 AGAGCCTCGGACACCATCAGCAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
11951710 GGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
11951752 GGAGCCTCAGACACCATCGGCACCCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
11951795 GGAGCCTTGGACACCATCGGCACCCTAGGCCCCTGGTCGTACG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* ** * * * * *
11951838 AGAGCCTCAAACACCATTGGTAACCTAAGCCCCTGATCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
11951881 GGAGCCTCGG-GACCATCGGC-ACCTAGGCCCTTGGTCGTGCA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * **
11951922 GGAGCCTCGGCCACCATCGAC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * *
11951964 GGAGCCTCGGACACCATCGGTAACCTAGGCCCCTGGTCATGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * ** *
11952007 GGAGCCTCGGGCACCATCAGC-ACCTTGGTACTTGGAT-GTACG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * * *
11952049 GAAGCCTCGTACACCATCGGCAACCTAGGCCCTTGGTTGTGCC
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
11952092 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTACG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * * *
11952135 AGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTCGGAT-GTACG
1 GGAGCCTCGGACACCATCGGCAACCTAGG-CCCTTGG-TCGTGCG
* * * * * **
11952178 GGAGTCTC-CAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
*
11952220 GGAGCCTCGGACACCATAGGCAACCTAGG
1 GGAGCCTCGGACACCATCGGCAACCTAGG
11952249 ACATTGGATG
Statistics
Matches: 592, Mismatches: 104, Indels: 28
0.82 0.14 0.04
Matches are distributed among these distances:
41 27 0.05
42 189 0.32
43 375 0.63
44 1 0.00
ACGTcount: A:0.18, C:0.33, G:0.31, T:0.18
Consensus pattern (43 bp):
GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
Found at i:11952276 original size:85 final size:85
Alignment explanation
Indices: 11951447--11952306 Score: 551
Period size: 85 Copynumber: 10.1 Consensus size: 85
11951437 GGACGTCGGT
* * * * * *
11951447 TGTGCGAGAGCCTC-GAGCAGCATCGGC-ACCTTGGTGCCTTGGATATGCAGGAGCCTCG-GACA
1 TGTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGG-CCCTTGGATGTGCGGGAGCCTCGAG-CA
* ***
11951509 CCATCGGCAACCTAGACCCTTGG-
63 CCATCGGC-ACCTTGGTGCTTGGA
* * * *
11951532 TCGTGCAGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCAC
1 T-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGAGCAC
* * **
11951596 CATTGGCAACCTAGGCCCTTGG-
64 CATCGGC-ACCTTGGTGCTTGGA
* * * * *
11951618 TCGTGCGAGAGCCTCGG-TACCATCGGTAACCTATGCCCTTGG-TCGTGCGAGAGCCTCG-GACA
1 T-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGAG-CA
* * **
11951680 CCATCAGCAACCTAGGCCCTTGG-
63 CCATCGGC-ACCTTGGTGCTTGGA
*
11951703 TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGG-TCGTGCGGGAGCCTC-AGACA
1 T-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGAG-CA
* ** *
11951765 CCATCGGCACCCTAGGCCCCTGG-
63 CCATCGGCA-CCTTGGTGCTTGGA
* * * * * * *
11951788 TCGTGCGGGAGCCTTGGACACCATCGGCACCCTAGGCCCCTGG-TCGTACGAGAGCCTCAAACAC
1 T-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGAGCAC
* * ** ** *
11951852 CATTGGTAACCTAAGCCCCT-GA
64 CATCGG-CACCTTGGTGCTTGGA
* *
11951874 TCGTGCGGGAGCCTCGG-GACCATCGGC-ACCTAGGCCCTTGG-TCGTGCAGGAGCCTCG-GCCA
1 T-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGAG-CA
*
11951935 CCATCGACACCTTGGTGCTTGGA
63 CCATCGGCACCTTGGTGCTTGGA
* * * *
11951958 TGTGCGGGAGCCTCGGACACCATCGGTAACCTAGGCCCCTGG-TCATGCGGGAGCCTCGGGCACC
1 TGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGAGCACC
* *
11952022 ATCAGCACCTTGGTACTTGGA
65 ATCGGCACCTTGGTGCTTGGA
* * * * * *
11952043 TGTACGGAAGCCTCGTACACCATCGGCAACCTAGGCCCTTGGTTGTGCCGGAGCCTCGGGCACCA
1 TGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGATGTGCGGGAGCCTCGAGCACCA
* * **
11952108 TCGGTAACCTAGGCCCTTGG-
66 TCGG-CACCTTGGTGCTTGGA
* * * * * * * * * *
11952128 TCGTACGAGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTCGGATGTACGGGAGTCTCCAGCAG
1 T-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGG-CCCTTGGATGTGCGGGAGCCTCGAGCAC
*
11952192 CATTGGCACCTTGGTGCTTGGA
64 CATCGGCACCTTGGTGCTTGGA
* * * * * *
11952214 TGTGCGGGAGCCTCGGACACCATAGGCAACCTAGGACATTGGATGTGCGAGTGCCTCGAGCAGCA
1 TGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGATGTGCGGGAGCCTCGAGCACCA
** * *
11952279 GGGGCACCCTGGTGCCTCGGA
66 TCGGCACCTTGGTG-CTTGGA
11952300 TGTGCGG
1 TGTGCGG
11952307 CCTAAAGAAA
Statistics
Matches: 642, Mismatches: 108, Indels: 49
0.80 0.14 0.06
Matches are distributed among these distances:
83 22 0.03
84 44 0.07
85 346 0.54
86 220 0.34
87 10 0.02
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.19
Consensus pattern (85 bp):
TGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGATGTGCGGGAGCCTCGAGCACCA
TCGGCACCTTGGTGCTTGGA
Found at i:11964022 original size:119 final size:120
Alignment explanation
Indices: 11963840--11964062 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
11963830 TCCTCGTTCA
* *
11963840 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
11963905 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
11963960 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
11964022 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
11964063 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 65 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:11964062 original size:40 final size:40
Alignment explanation
Indices: 11963838--11964062 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
11963828 GCTCCTCGTT
* *
11963838 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
11963878 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
11963918 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
11963958 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
11963997 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
11964038 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
11964063 CATCATTCAA
Statistics
Matches: 162, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 117 0.72
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:11967996 original size:377 final size:377
Alignment explanation
Indices: 11967302--11968058 Score: 1514
Period size: 377 Copynumber: 2.0 Consensus size: 377
11967292 AAGAGTCGCT
11967302 GATTCATGCGATGAAAGACTGCTCCAAGGCTCGTGAAGTCCTTGTTGCTGGAAGTTTAAATAACA
1 GATTCATGCGATGAAAGACTGCTCCAAGGCTCGTGAAGTCCTTGTTGCTGGAAGTTTAAATAACA
11967367 AATTGCTGGAAGGGGATTACATTGACTGTATCTACTGGCTCGAAGATGTGTTTCGTGAGCTCGAT
66 AATTGCTGGAAGGGGATTACATTGACTGTATCTACTGGCTCGAAGATGTGTTTCGTGAGCTCGAT
11967432 CATAAGGCTACTGCTGACTTTTTAACCCTTCTCTGGAACAACTGGAATGATAGAAATAATAAGGT
131 CATAAGGCTACTGCTGACTTTTTAACCCTTCTCTGGAACAACTGGAATGATAGAAATAATAAGGT
11967497 TTTTAATGGAAAGATGGATGCCGCAGTGCTGATTTGGGAGAGGGCACGTACTTTAAGTAAAGATT
196 TTTTAATGGAAAGATGGATGCCGCAGTGCTGATTTGGGAGAGGGCACGTACTTTAAGTAAAGATT
11967562 TTAGAATTTTTAACTTCACTGAACCTCCGGTCTTCTCCCAGATTCAGACGAACGAGAGCTGGGAA
261 TTAGAATTTTTAACTTCACTGAACCTCCGGTCTTCTCCCAGATTCAGACGAACGAGAGCTGGGAA
11967627 AAGCCTCTAAATGGCTATATCAAAGTGAATGTTGACGCTGCGGTTTCGAAAG
326 AAGCCTCTAAATGGCTATATCAAAGTGAATGTTGACGCTGCGGTTTCGAAAG
11967679 GATTCATGCGATGAAAGACTGCTCCAAGGCTCGTGAAGTCCTTGTTGCTGGAAGTTTAAATAACA
1 GATTCATGCGATGAAAGACTGCTCCAAGGCTCGTGAAGTCCTTGTTGCTGGAAGTTTAAATAACA
11967744 AATTGCTGGAAGGGGATTACATTGACTGTATCTACTGGCTCGAAGATGTGTTTCGTGAGCTCGAT
66 AATTGCTGGAAGGGGATTACATTGACTGTATCTACTGGCTCGAAGATGTGTTTCGTGAGCTCGAT
11967809 CATAAGGCTACTGCTGACTTTTTAACCCTTCTCTGGAACAACTGGAATGATAGAAATAATAAGGT
131 CATAAGGCTACTGCTGACTTTTTAACCCTTCTCTGGAACAACTGGAATGATAGAAATAATAAGGT
11967874 TTTTAATGGAAAGATGGATGCCGCAGTGCTGATTTGGGAGAGGGCACGTACTTTAAGTAAAGATT
196 TTTTAATGGAAAGATGGATGCCGCAGTGCTGATTTGGGAGAGGGCACGTACTTTAAGTAAAGATT
11967939 TTAGAATTTTTAACTTCACTGAACCTCCGGTCTTCTCCCAGATTCAGACGAACGAGAGCTGGGAA
261 TTAGAATTTTTAACTTCACTGAACCTCCGGTCTTCTCCCAGATTCAGACGAACGAGAGCTGGGAA
11968004 AAGCCTCTAAATGGCTATATCAAAGTGAATGTTGACGCTGCGGTTTCGAAAG
326 AAGCCTCTAAATGGCTATATCAAAGTGAATGTTGACGCTGCGGTTTCGAAAG
11968056 GAT
1 GAT
11968059 GCAGTGGATT
Statistics
Matches: 380, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
377 380 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (377 bp):
GATTCATGCGATGAAAGACTGCTCCAAGGCTCGTGAAGTCCTTGTTGCTGGAAGTTTAAATAACA
AATTGCTGGAAGGGGATTACATTGACTGTATCTACTGGCTCGAAGATGTGTTTCGTGAGCTCGAT
CATAAGGCTACTGCTGACTTTTTAACCCTTCTCTGGAACAACTGGAATGATAGAAATAATAAGGT
TTTTAATGGAAAGATGGATGCCGCAGTGCTGATTTGGGAGAGGGCACGTACTTTAAGTAAAGATT
TTAGAATTTTTAACTTCACTGAACCTCCGGTCTTCTCCCAGATTCAGACGAACGAGAGCTGGGAA
AAGCCTCTAAATGGCTATATCAAAGTGAATGTTGACGCTGCGGTTTCGAAAG
Found at i:11968843 original size:58 final size:59
Alignment explanation
Indices: 11968752--11968872 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
11968742 CCCTCCCCAA
* *
11968752 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAATAATGAATGAACCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCG
* *
11968811 TCCC-AAAGCTAGAATTCAGATACCGTTGCATGTTCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCG
11968869 TCCC
1 TCCC
11968873 TGTTCCTCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 54 0.93
59 4 0.07
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCG
Found at i:11969657 original size:43 final size:43
Alignment explanation
Indices: 11969623--11970589 Score: 981
Period size: 43 Copynumber: 22.7 Consensus size: 43
11969613 TGGATATGCA
*
11969623 GGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
11969666 GGAGCCTCGGCCATCATCAGTAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
11969709 AGAGCCTCGG-TACCATCGACAACCTATGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
11969751 GGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
11969794 GGAGCCTC-GAGCACCATCGGC-ACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
11969836 GGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
11969879 GGAGCCTCAGACACCATCGGTACCCTAGGCGCC-TGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGC-CCTTGGTCGTGCG
*
11969922 GGAGCCTCGGACACCATCGGCAACCTAGG-CCTCTAGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCT-TGGTCGTGCG
* * * * * * * *
11969965 GGAGCTTCGGGCACCATCGGCATCCTAGTCCCCTAGTCGTACA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
** * *
11970008 GGAGCCTCGGGTACCATCGGTAGCCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
11970051 GGAGCCCCGGACACCATCGACAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
11970094 GGAGCCTCGG-GACCATCGGCAACCTAAGCTCC-TAGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGC-CCTTGGTCGTGCG
* * *
11970136 GGAGCCTCGGGCACCATCTGCAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
11970179 GGAGCCTCGGGCACCATCGGTACCCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
11970222 AGAGCCTCGGGCACCATCGGCATCCTAGGCCCTTGGTCGTGTG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
11970265 AGAGCCTTGGGA-A-CATCGGC-ATCTAGGCCCTTGGTCGTGCG
1 GGAGCC-TCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * **
11970306 GAAGCCTCGGGCACTATCGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * *
11970348 GGAGCCTCGGACACTATCGGTAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* ** *
11970391 GGAGCCTCAGG-CACCATCGGC-ACCTTGGTGCTTGGAT-GTGTG
1 GGAGCCTC-GGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
*
11970433 GGAACCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * *
11970476 GGAGCGTC-GAGCACCATCGTC-ACCTTGGTACCTCGGAT-GTGCG
1 GGAGCCTCGGA-CACCATCGGCAACCTAGG-CCCTTGG-TCGTGCG
* *
11970519 GGAGCCTC-GAGCAGCATAGGC-ACCTTAGTG--CTTGGAT-GTGCG
1 GGAGCCTCGGA-CACCATCGGCAACC-TAG-GCCCTTGG-TCGTGCG
* *
11970561 GGAGCCTCAGACACCATAGGCAACCTAGG
1 GGAGCCTCGGACACCATCGGCAACCTAGG
11970590 ACGTTGGATG
Statistics
Matches: 783, Mismatches: 112, Indels: 60
0.82 0.12 0.06
Matches are distributed among these distances:
40 3 0.00
41 28 0.04
42 230 0.29
43 509 0.65
44 12 0.02
45 1 0.00
ACGTcount: A:0.16, C:0.33, G:0.32, T:0.18
Consensus pattern (43 bp):
GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
Found at i:11969751 original size:85 final size:86
Alignment explanation
Indices: 11969623--11970494 Score: 996
Period size: 85 Copynumber: 10.2 Consensus size: 86
11969613 TGGATATGCA
* * * * *
11969623 GGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCATCATCAGTA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTA
11969688 ACCTAGGCCCTTGGTCGTGCG
66 ACCTAGGCCCTTGGTCGTGCG
* * * *
11969709 AGAGCCTC-GGTACCATCGACAACCTATGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTA
11969773 ACCTAGGCCCTTGGTCGTGCG
66 ACCTAGGCCCTTGGTCGTGCG
* * * *
11969794 GGAGCCTCGAGCACCATCGGC-ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTA
* *
11969858 CCCTAGGCCCCTGGTCGTGCG
66 ACCTAGGCCCTTGGTCGTGCG
* * * * *
11969879 GGAGCCTCAGACACCATCGGTACCCTAGGCGCC-TGGTCGTGCGGGAGCCTCGGACACCATCGGC
1 GGAGCCTCGGGCACCATCGGCAACCTAGGC-CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGT
*
11969943 AACCTAGG-CCTCTAGTCGTGCG
65 AACCTAGGCCCT-TGGTCGTGCG
* * * * * * * **
11969965 GGAGCTTCGGGCACCATCGGCATCCTAGTCCCCTAGTCGTACAGGAGCCTCGGGTACCATCGGTA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTA
*
11970030 GCCTAGGCCCTTGGTCGTGCG
66 ACCTAGGCCCTTGGTCGTGCG
* * * * * *
11970051 GGAGCCCCGGACACCATCGACAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG-GACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTA
* *
11970115 ACCTAAGCTCC-TAGTCGTGCG
66 ACCTAGGC-CCTTGGTCGTGCG
* * *
11970136 GGAGCCTCGGGCACCATCTGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTA
* *
11970201 CCCTAGGCCCCTGGTCGTGCG
66 ACCTAGGCCCTTGGTCGTGCG
* * * * *
11970222 AGAGCCTCGGGCACCATCGGCATCCTAGGCCCTTGGTCGTGTGAGAGCCTTGGGA-A-CATCGG-
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCC-TCGGACACCATCGGT
* *
11970284 CATCTAGGCCCTTGGTCGTGCG
65 AACCTAGGCCCTTGGTCGTGCG
* * * ** *
11970306 GAAGCCTCGGGCACTATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACTATCGGT
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGT
*
11970369 AACCTAGGCCCCTGGTCGTGCG
65 AACCTAGGCCCTTGGTCGTGCG
* * ** * * *
11970391 GGAGCCTCAGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGTGGGAACCTCGGACACCATCGGC
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGT
11970454 AACCTAGGCCCTTGGTCGTGCG
65 AACCTAGGCCCTTGGTCGTGCG
* *
11970476 GGAGCGTCGAGCACCATCG
1 GGAGCCTCGGGCACCATCG
11970495 TCACCTTGGT
Statistics
Matches: 670, Mismatches: 102, Indels: 29
0.84 0.13 0.04
Matches are distributed among these distances:
82 4 0.01
83 20 0.03
84 42 0.06
85 348 0.52
86 248 0.37
87 8 0.01
ACGTcount: A:0.16, C:0.33, G:0.32, T:0.18
Consensus pattern (86 bp):
GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGTA
ACCTAGGCCCTTGGTCGTGCG
Found at i:11969769 original size:128 final size:127
Alignment explanation
Indices: 11969623--11970494 Score: 958
Period size: 128 Copynumber: 6.8 Consensus size: 127
11969613 TGGATATGCA
* * *
11969623 GGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCATCATCAGTA
1 GGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATC-GCA
* * * * *
11969688 ACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGTACCATCGACAACCTATGCCCTTGGTCGTGCG
65 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
11969751 GGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GAGCACCATCGGC
1 GGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATC-GC
* *
11969815 -ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCG
64 AACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* *
11969879 GGAGCCTCAGACACCATCGGTACCCTAGGCGCC-TGGTCGTGCGGGAGCCTCGGACACCATCGGC
1 GGAGCCTCGGACACCATCGGTAACCTAGGC-CCTTGGTCGTGCGGGAGCCTCGGACACCATC-GC
* * * * * *
11969943 AACCTAGG-CCTCTAGTCGTGCGGGAGCTTCGGGCACCATCGGCATCCTAGTCCCCTAGTCGTAC
64 AACCTAGGCCCT-TGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCCTGGTCGTGC
*
11970007 A
127 G
** * *
11970008 GGAGCCTCGGGTACCATCGGTAGCCTAGGCCCTTGGTCGTGCGGGAGCCCCGGACACCATCGACA
1 GGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCG-CA
* * * * *
11970073 ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGACCATCGGCAACCTAAGCTCCTAGTCGTGCG
65 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * * * * *
11970136 GGAGCCTCGGGCACCATCTGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTA
1 GGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATC-GCA
* * * * * *
11970201 CCCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCATCCTAGGCCCTTGGTCGTGTG
65 ACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * * * * * *
11970265 AGAGCCTTGGGA-A-CATCGG-CATCTAGGCCCTTGGTCGTGCGGAAGCCTCGGGCACTATCGGC
1 GGAGCC-TCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATC-GC
* ** * *
11970327 -ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACTATCGGTAACCTAGGCCCCTGGTCGTGC
64 AACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCCTGGTCGTGC
11970390 G
127 G
* * ** * *
11970391 GGAGCCTCAGG-CACCATCGG-CACCTTGGTGCTTGGAT-GTGTGGGAACCTCGGACACCATCGG
1 GGAGCCTC-GGACACCATCGGTAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATC-G
*
11970453 CAACCTAGGCCCTTGGTCGTGCGGGAGCGTCGAGCACCATCG
63 CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG-GCACCATCG
11970495 TCACCTTGGT
Statistics
Matches: 633, Mismatches: 90, Indels: 42
0.83 0.12 0.05
Matches are distributed among these distances:
125 3 0.00
126 56 0.09
127 105 0.17
128 294 0.46
129 170 0.27
130 5 0.01
ACGTcount: A:0.16, C:0.33, G:0.32, T:0.18
Consensus pattern (127 bp):
GGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGCAA
CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
Found at i:11970524 original size:128 final size:125
Alignment explanation
Indices: 11969572--11970589 Score: 943
Period size: 128 Copynumber: 8.0 Consensus size: 125
11969562 TAGGACGTCA
* ** * * * *
11969572 GTCGTGCGAGAGCCTCGAGCAGTATCGGCACCTTGGTGCCTTGGAT-ATGCAGGAGCCTCGGACA
1 GTCGTGCGGGAGCCTCG-GCACCATCGGCACCTAGGT-CCCTGG-TCGTGCGGGAGCCTCGG-CA
* * * * *
11969636 CCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCATCATCAGTAACCTAGGCCCTTG
62 CCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTG
* * * *
11969701 GTCGTGCGAGAGCCTCGGTACCATCGACAACCTATG-CCCTTGGTCGTGCGGGAGCCTCGGACAC
1 GTCGTGCGGGAGCCTCGGCACCATCGGC-ACCTAGGTCCC-TGGTCGTGCGGGAGCCTCGG-CAC
* *
11969765 CATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GAGCACCATCGGC-ACCTAGGCCCCTG
63 CATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTG
* *
11969828 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGGGAGCCTCAGACAC
1 GTCGTGCGGGAGCCTC-GGCACCATCGGCA-CCTAGGTCCCTGGTCGTGCGGGAGCCTC-GGCAC
*
11969893 CATCGGTACCCTAGGCGCC-TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGG-CCTCT
63 CATCGGCA-CCTAGGC-CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCT-T
*
11969956 A
125 G
* * * * *
11969957 GTCGTGCGGGAGCTTCGGGCACCATCGGCATCCTA-GTCCCCTAGTCGTACAGGAGCCTCGGGTA
1 GTCGTGCGGGAGCCTC-GGCACCATCGGCA-CCTAGGT-CCCTGGTCGTGCGGGAGCCTC-GGCA
* * * *
11970021 CCATCGGTAGCCTAGGCCCTTGGTCGTGCGGGAGCCCCGGACACCATCGACAACCTAGGCCCCTG
62 CCATCGGCA-CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTG
* * *
11970086 GTCGTGCGGGAGCCTCGGGACCATCGGCAACCTAAG-CTCCTAGTCGTGCGGGAGCCTCGGGCAC
1 GTCGTGCGGGAGCCTCGGCACCATCGGC-ACCTAGGTC-CCTGGTCGTGCGGGAGCCTC-GGCAC
* * * * * *
11970150 CATCTGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTACCCTAGGCCCCTG
63 CATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTG
* * * * * *
11970214 GTCGTGCGAGAGCCTCGGGCACCATCGGCATCCTAGG-CCCTTGGTCGTGTGAGAGCCTTGGGAA
1 GTCGTGCGGGAGCCTC-GGCACCATCGGCA-CCTAGGTCCC-TGGTCGTGCGGGAGCCTCGGCAC
* * * * * **
11970278 CATCGGCATCTAGGCCCTTGGTCGTGCGGAAGCCTCGGGCACTATCGGC-ACCTTGGTGCTTG
63 CATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTG
* * *
11970340 GAT-GTGCGGGAGCCTCGGACACTATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCAGGCA
1 G-TCGTGCGGGAGCCTCGG-CACCATCGG-CACCTAGGTCCCTGGTCGTGCGGGAGCCTC-GGCA
* ** * *
11970404 CCATCGGCACCTTGGTGCTTGGAT-GTGTGGGAACCTCGGACACCATCGGCAACCTAGGCCCTTG
62 CCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTG
* * * *
11970468 GTCGTGCGGGAGCGTCGAGCACCATCGTCACCTTGGTACCTCGGAT-GTGCGGGAGCCTCGAGCA
1 GTCGTGCGGGAGCCTCG-GCACCATCGGCACCTAGGTCCCT-GG-TCGTGCGGGAGCCTCG-GCA
* * * *
11970532 GCATAGGCACCTTAGTG--CTTGGAT-GTGCGGGAGCCTCAGACACCATAGGCAACCTAGG
62 CCATCGGCACC-TAG-GCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGG
11970590 ACGTTGGATG
Statistics
Matches: 749, Mismatches: 103, Indels: 75
0.81 0.11 0.08
Matches are distributed among these distances:
125 2 0.00
126 50 0.07
127 128 0.17
128 368 0.49
129 198 0.26
130 3 0.00
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.19
Consensus pattern (125 bp):
GTCGTGCGGGAGCCTCGGCACCATCGGCACCTAGGTCCCTGGTCGTGCGGGAGCCTCGGCACCAT
CGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTG
Found at i:11970614 original size:128 final size:128
Alignment explanation
Indices: 11970386--11970616 Score: 322
Period size: 128 Copynumber: 1.8 Consensus size: 128
11970376 GCCCCTGGTC
* * * * *
11970386 GTGCGGGAGCCTCAGGCACCATCGGCACCTTGGTGCTTGGATGTGTGGGAACCTCGGACACCATC
1 GTGCGGGAGCCTCAGGCACCATAGGCACCTTAGTGCTTGGATGTGCGGGAACCTCAGACACCATA
* * *
11970451 GGCAACCTAGGCCCTTGGTCGTGCGGGAGCGTCGAGCACCATCGTCACCTTGGTACCTCGGAT
66 GGCAACCTAGGACCTTGGTCGTACGGGAGCCTCGAGCACCATCGTCACCTTGGTACCTCGGAT
* *
11970514 GTGCGGGAGCCTC-GAGCAGCATAGGCACCTTAGTGCTTGGATGTGCGGGAGCCTCAGACACCAT
1 GTGCGGGAGCCTCAG-GCACCATAGGCACCTTAGTGCTTGGATGTGCGGGAACCTCAGACACCAT
* *
11970578 AGGCAACCTAGGACGTTGGAT-GTACGGGTGCCTCGAGCA
65 AGGCAACCTAGGACCTTGG-TCGTACGGGAGCCTCGAGCA
11970617 GTAGGGGCAC
Statistics
Matches: 89, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
127 1 0.01
128 87 0.98
129 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.34, T:0.19
Consensus pattern (128 bp):
GTGCGGGAGCCTCAGGCACCATAGGCACCTTAGTGCTTGGATGTGCGGGAACCTCAGACACCATA
GGCAACCTAGGACCTTGGTCGTACGGGAGCCTCGAGCACCATCGTCACCTTGGTACCTCGGAT
Found at i:11970638 original size:128 final size:128
Alignment explanation
Indices: 11970386--11970645 Score: 317
Period size: 128 Copynumber: 2.0 Consensus size: 128
11970376 GCCCCTGGTC
* * * * *
11970386 GTGCGGGAGCCTCAGGCACCATCGGCACCTTGGTGCTTGGATGTGTGGGAACCTCGGACACCATC
1 GTGCGGGAGCCTCAGGCACCATAGGCACCTTAGTGCTTGGATGTGCGGGAACCTCAGACACCATA
* * * * * *
11970451 GGCAACCTAGGCCCTTGGTCGTGCGGGAGCGTCGAGCACCATCGTCACCTTGGTACCTCGGAT
66 GGCAACCTAGGACCTTGGTCGTACGGGAGCCTCGAGCACCAGCGGCACCCTGGTACCTCGGAT
* *
11970514 GTGCGGGAGCCTC-GAGCAGCATAGGCACCTTAGTGCTTGGATGTGCGGGAGCCTCAGACACCAT
1 GTGCGGGAGCCTCAG-GCACCATAGGCACCTTAGTGCTTGGATGTGCGGGAACCTCAGACACCAT
* * ** * *
11970578 AGGCAACCTAGGACGTTGGAT-GTACGGGTGCCTCGAGCAGTAGGGGCACCCTGGTGCCTCGGAT
65 AGGCAACCTAGGACCTTGG-TCGTACGGGAGCCTCGAGCACCAGCGGCACCCTGGTACCTCGGAT
11970642 GTGC
1 GTGC
11970646 AGGCTAAAGA
Statistics
Matches: 111, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
127 1 0.01
128 109 0.98
129 1 0.01
ACGTcount: A:0.18, C:0.28, G:0.35, T:0.20
Consensus pattern (128 bp):
GTGCGGGAGCCTCAGGCACCATAGGCACCTTAGTGCTTGGATGTGCGGGAACCTCAGACACCATA
GGCAACCTAGGACCTTGGTCGTACGGGAGCCTCGAGCACCAGCGGCACCCTGGTACCTCGGAT
Found at i:11974398 original size:58 final size:59
Alignment explanation
Indices: 11974307--11974427 Score: 190
Period size: 58 Copynumber: 2.1 Consensus size: 59
11974297 CCCTCCCCAA
* * *
11974307 TCCCAAAAGGTAGAATTCAGATACTGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAATCG
* *
11974366 TCCC-AAAGCTAGAATTCAGATACCGTTGCATGTTTGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAATCG
11974424 TCCC
1 TCCC
11974428 TGTCCCTCCC
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 53 0.93
59 4 0.07
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.26
Consensus pattern (59 bp):
TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAATCG
Found at i:11981045 original size:24 final size:23
Alignment explanation
Indices: 11981015--11981090 Score: 64
Period size: 24 Copynumber: 3.2 Consensus size: 23
11981005 GGTTAGGTTC
11981015 CCGGCGGTGCTCCGATGATCCATT
1 CCGGCGGTGCTCCGATGA-CCATT
* * *
11981039 CCGGCGGTGGTCC-AGTGAGCTTT
1 CCGGCGGTGCTCCGA-TGACCATT
* *
11981062 CCCGGCGGTGCTCCGGTGAGCCATC
1 -CCGGCGGTGCTCCGATGA-CCATT
11981087 CCGG
1 CCGG
11981091 AATATAGAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 8
0.71 0.14 0.14
Matches are distributed among these distances:
23 4 0.10
24 34 0.85
25 2 0.05
ACGTcount: A:0.09, C:0.34, G:0.36, T:0.21
Consensus pattern (23 bp):
CCGGCGGTGCTCCGATGACCATT
Found at i:11981374 original size:43 final size:43
Alignment explanation
Indices: 11981340--11982474 Score: 1272
Period size: 43 Copynumber: 26.7 Consensus size: 43
11981330 TGGATATGCA
* * *
11981340 GGAGCCTCGGACACCATCAGCAGCCTAGGCCCTTGGTTGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
11981383 GGAGCCTCGGCCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
11981426 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTTCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
11981469 GGAACCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
11981512 CGAGCCTCGG-CACCATCGGCAACCTATGCCCTTGGTCGTGTG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
11981554 GGAGCCTCGGACACCATCGGCAACCTAAGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
11981597 GGAGCCTCGGGCACCATCGGC-ACCTAGGCCCCTGGTCTTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
11981639 GGAGCCTCAGACACCATCGGCACCCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * **
11981682 GGAGCCTCGGACACCATCGGCACCCTAGGCCCCTGGTCGTATG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
11981725 GGAGCCTCGGACACCATCGGCAACCTAGGCTCC-TGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGC-CCTTGGTCGTGCG
*
11981768 GGAGCCTCGG-GACCATCGGCAACCTAGGCCC-TGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
11981809 GGAGCCTCGGGCACCATCGGTAACCTAGGCCC-TGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
11981851 GG-GCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTTGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
11981893 GGAGCCTCGG-GACCATCGGCAACCTTGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
11981935 GGTGCCTCGGGCACCATCGGTAACCTAGGACCC-TGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGG-CCCTTGGTCGTGCG
* * * *
11981978 GGAGCCTCGGGCACCATCAGCAACCTAGGCCCCTGGTCGTGCA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
11982021 GGAGCCTCGGGCACCATCGGCACCCTATGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
11982064 AGAGCCTCGGGCACCATTGGCACCCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
11982107 AGAGCCTC-GAGACCATCCGC-ACCTAGGCCCTTGGTCGTGCA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * **
11982148 GGAGCCTTGTG-CACCATCGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCG-GACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * *
11982190 GGAGCCTCGGACACCATCGGTAACCTTGG-GCTCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCT-TGGTCGTGCG
* * * ** *
11982233 GGAGCCTCGGGCACCATCGGC-ATCTTGGTGCTTGGAT-GTGTG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* *
11982275 GGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCT
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
11982318 GGAGCCTCGGGCACCATCGGTAACCTAAGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
11982361 GGAGCCTCGAGA-ACCATCGG-TACCTTGGTGCCTCGGAT-GTGCG
1 GGAGCCTCG-GACACCATCGGCAACCTAGG-CCCTTGG-TCGTGCG
* * * ** *
11982404 GGAGCCTC-GAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCA
1 GGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* *
11982446 GGAGCCTCGGACACCATAGACAACCTAGG
1 GGAGCCTCGGACACCATCGGCAACCTAGG
11982475 ACGTTTGATG
Statistics
Matches: 958, Mismatches: 106, Indels: 56
0.86 0.09 0.05
Matches are distributed among these distances:
41 78 0.08
42 291 0.30
43 582 0.61
44 7 0.01
ACGTcount: A:0.15, C:0.34, G:0.33, T:0.18
Consensus pattern (43 bp):
GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
Found at i:11981569 original size:85 final size:85
Alignment explanation
Indices: 11981292--11982474 Score: 1290
Period size: 85 Copynumber: 13.9 Consensus size: 85
11981282 GACGTCAGTG
* * * * * * *
11981292 GTGCGAGAGCCTCGAGCAGCATCGGC-ACCTTGGTGCCTTGGAT-ATGCAGGAGCCTCGGACACC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGG-CACC
* * *
11981355 ATCAGCAGCCTAGGCCCTTGGTT
63 ATCGGCAACCTAGGCCCTTGGTC
* *
11981378 GTGCGGGAGCCTCGGCCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCAT
11981443 CGGCAACCTAGGCCCTTGGTC
65 CGGCAACCTAGGCCCTTGGTC
* * * *
11981464 GTTCGGGAACCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGCGAGCCTCGGCACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATC
*
11981529 GGCAACCTATGCCCTTGGTC
66 GGCAACCTAGGCCCTTGGTC
* * *
11981549 GTGTGGGAGCCTCGGACACCATCGGCAACCTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCAT
*
11981614 CGGC-ACCTAGGCCCCTGGTC
65 CGGCAACCTAGGCCCTTGGTC
* * * * *
11981634 TTGCGGGAGCCTCAGACACCATCGGCACCCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACCAT
* *
11981699 CGGCACCCTAGGCCCCTGGTC
65 CGGCAACCTAGGCCCTTGGTC
** * *
11981720 GTATGGGAGCCTCGGACACCATCGGCAACCTAGGCTCC-TGGTCGTGCGGGAGCCTCGGGACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC-CCTTGGTCGTGCGGGAGCCTCGGCACCAT
11981784 CGGCAACCTAGGCCC-TGGTC
65 CGGCAACCTAGGCCCTTGGTC
*
11981804 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCC-TGGTCGTGCGGG-GCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCAT
* *
11981867 CGGCAACCTAGGCCCCTGGTT
65 CGGCAACCTAGGCCCTTGGTC
* * *
11981888 GTGCGGGAGCCTCGGG-ACCATCGGCAACCTTGGCCCCTGGTCGTGCGGGTGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCAT
*
11981952 CGGTAACCTAGGACCC-TGGTC
65 CGGCAACCTAGG-CCCTTGGTC
* * *
11981973 GTGCGGGAGCCTCGGGCACCATCAGCAACCTAGGCCCCTGGTCGTGCAGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCAT
* * *
11982038 CGGCACCCTATGCCCCTGGTC
65 CGGCAACCTAGGCCCTTGGTC
* * * *
11982059 GTGCGAGAGCCTCGGGCACCATTGGCACCCTAGGCCCTTGGTCGTGCGAGAGCCTCGAG-ACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG-GCACCAT
*
11982123 CCGC-ACCTAGGCCCTTGGTC
65 CGGCAACCTAGGCCCTTGGTC
* * * * **
11982143 GTGCAGGAGCCTTGTGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG-CACCA
* * *
11982206 TCGGTAACCTTGG-GCTCTGGTC
64 TCGGCAACCTAGGCCCT-TGGTC
* * ** * *
11982228 GTGCGGGAGCCTCGGGCACCATCGGC-ATCTTGGTGCTTGGAT-GTGTGGGAGCCTCAGACACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC-GGCACCA
11982291 TCGGCAACCTAGGCCCTTGGTC
64 TCGGCAACCTAGGCCCTTGGTC
* * * *
11982313 GTGCTGGAGCCTCGGGCACCATCGGTAACCTAAGCCCTTGGTCGTGCGGGAGCCTCGAGAACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG-GCACCAT
* * * *
11982378 CGG-TACCTTGGTGCCTCGGAT-
65 CGGCAACCTAGG-CCCTTGG-TC
* * * * ** *
11982399 GTGCGGGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCAGGAGCCTCGGACACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG-CACCA
* *
11982462 TAGACAACCTAGG
64 TCGGCAACCTAGG
11982475 ACGTTTGATG
Statistics
Matches: 947, Mismatches: 120, Indels: 60
0.84 0.11 0.05
Matches are distributed among these distances:
82 6 0.01
83 77 0.08
84 115 0.12
85 371 0.39
86 367 0.39
87 11 0.01
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (85 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATC
GGCAACCTAGGCCCTTGGTC
Found at i:11981576 original size:128 final size:128
Alignment explanation
Indices: 11981292--11982474 Score: 1324
Period size: 128 Copynumber: 9.3 Consensus size: 128
11981282 GACGTCAGTG
* * * * * * * *
11981292 GTGCGAGAGCCTCGAGCAGCATCGGC-ACCTTGGTGCCTTGGAT-ATGCAGGAGCCTCGGACACC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACC
* * * *
11981355 ATCAGCAGCCTAGGCCCTTGGTTGTGCGGGAGCCTCGGCCACCATCGGTAACCTAGGCCCTTGGT
64 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGT
11981420 C
128 C
* *
11981421 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTTCGGGAACCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * *
11981486 CGGTAACCTAGGCCCTTGGTCGTGCGCGAGCCTCGGCACCATCGGCAACCTATGCCCTTGGTC
66 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
11981549 GTGTGGGAGCCTCGGACACCATCGGCAACCTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * * * *
11981614 CGGC-ACCTAGGCCCCTGGTCTTGCGGGAGCCTCAGACACCATCGGCACCCTAGGCCCCTGGTC
66 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTC
* * * ** *
11981677 GTGCGGGAGCCTCGGACACCATCGGCACCCTAGGCCCCTGGTCGTATGGGAGCCTCGGACACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
*
11981742 CGGCAACCTAGGCTCC-TGGTCGTGCGGGAGCCTCGGGACCATCGGCAACCTAGGCCC-TGGTC
66 CGGCAACCTAGGC-CCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
*
11981804 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCC-TGGTCGTGCGGG-GCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * * * *
11981867 CGGCAACCTAGGCCCCTGGTTGTGCGGGAGCCTCGGGACCATCGGCAACCTTGGCCCCTGGTC
66 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
11981930 GTGCGGGTGCCTCGGGCACCATCGGTAACCTAGGACCC-TGGTCGTGCGGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * * * * *
11981994 TCAGCAACCTAGGCCCCTGGTCGTGCAGGAGCCTCGGGCACCATCGGCACCCTATGCCCCTGGTC
65 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
11982059 GTGCGAGAGCCTCGGGCACCATTGGCACCCTAGGCCCTTGGTCGTGCGAGAGCCTCGAG-ACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * * * **
11982123 CCGC-ACCTAGGCCCTTGGTCGTGCAGGAGCCTTGTGCACCATCGGC-ACCTTGGTGCTTGGAT-
66 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG-GCACCATCGGCAACCTAGGCCCTTGG-TC
* * * *
11982185 GTGCGGGAGCCTCGGACACCATCGGTAACCTTGG-GCTCTGGTCGTGCGGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCA
* * ** * *
11982249 TCGGC-ATCTTGGTGCTTGGAT-GTGTGGGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGT
65 TCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGT
11982312 C
128 C
* * * * *
11982313 GTGCTGGAGCCTCGGGCACCATCGGTAACCTAAGCCCTTGGTCGTGCGGGAGCCTCGAGAACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * * * * * * **
11982378 CGG-TACCTTGGTGCCTCGGAT-GTGCGGGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGA
66 CGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCG-GCACCATCGGCAACCTAGGCCCTTGG-
11982440 T-
127 TC
* * * *
11982441 GTGCAGGAGCCTCGGACACCATAGACAACCTAGG
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG
11982475 ACGTTTGATG
Statistics
Matches: 912, Mismatches: 118, Indels: 49
0.85 0.11 0.05
Matches are distributed among these distances:
124 2 0.00
125 67 0.07
126 104 0.11
127 158 0.17
128 369 0.40
129 204 0.22
130 8 0.01
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (128 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:11990076 original size:58 final size:59
Alignment explanation
Indices: 11989975--11990095 Score: 163
Period size: 58 Copynumber: 2.1 Consensus size: 59
11989965 CCCTCCCCAA
* * ** * *
11989975 TCCCAAAAGGTAGAATTCAGATACCGTTACATTTTTGGTACCCAATAATGAATGAACCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCAGAACCCAACAATGAATGAACCG
* *
11990034 TCCC-AAAGCTAGAATTCAGATACCGTTGCATGTTCAGAACCCAACAATGAATGAATCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCAGAACCCAACAATGAATGAACCG
11990092 TCCC
1 TCCC
11990096 TGTCCCTCTC
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
58 50 0.93
59 4 0.07
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.25
Consensus pattern (59 bp):
TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCAGAACCCAACAATGAATGAACCG
Found at i:11992905 original size:27 final size:28
Alignment explanation
Indices: 11992821--11992918 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
11992811 CATGAGATTG
* * * *
11992821 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
11992850 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
11992878 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
11992905 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
11992919 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:11992929 original size:27 final size:27
Alignment explanation
Indices: 11992849--11992931 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
11992839 TAAATTGTAC
* *
11992849 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
11992877 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
11992904 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
11992931 A
1 A
11992932 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:11992932 original size:29 final size:27
Alignment explanation
Indices: 11992821--11992932 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
11992811 CATGAGATTG
** * *
11992821 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
11992850 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
11992878 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
11992905 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
11992933 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:12001230 original size:27 final size:28
Alignment explanation
Indices: 12001146--12001243 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
12001136 CATGAGATTG
* * * *
12001146 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
12001175 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
12001203 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
12001230 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
12001244 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:12001254 original size:27 final size:27
Alignment explanation
Indices: 12001174--12001256 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
12001164 TAAATTGTAC
* *
12001174 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
12001202 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
12001229 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
12001256 A
1 A
12001257 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:12001257 original size:29 final size:27
Alignment explanation
Indices: 12001146--12001257 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
12001136 CATGAGATTG
** * *
12001146 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
12001175 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
12001203 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
12001230 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
12001258 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Done.