Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 40 of 250
Found at i:12004491 original size:14 final size:14
Alignment explanation
Indices: 12004472--12004500 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
12004462 ACAGGTGAAG
12004472 AGGTGATGAAAAAA
1 AGGTGATGAAAAAA
12004486 AGGTGATGAAAAAA
1 AGGTGATGAAAAAA
12004500 A
1 A
12004501 TGGGCAAAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.28, T:0.14
Consensus pattern (14 bp):
AGGTGATGAAAAAA
Found at i:12006169 original size:20 final size:20
Alignment explanation
Indices: 12006144--12006193 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
12006134 TGGCTTAAAA
12006144 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
12006164 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
12006181 GTGGTAGTGGATT
1 TTGGTAGTGGATT
12006194 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:12010798 original size:20 final size:20
Alignment explanation
Indices: 12010773--12010822 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
12010763 TGGCTTAAAA
12010773 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
12010793 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
12010810 GTGGTAGTGGATT
1 TTGGTAGTGGATT
12010823 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:12012150 original size:24 final size:25
Alignment explanation
Indices: 12012096--12012160 Score: 62
Period size: 24 Copynumber: 2.7 Consensus size: 25
12012086 GCCGGTTAGG
* *
12012096 TTCCCGGTGGTGCTCCGATGATCTA
1 TTCCCGGTGGTGCTCCGACGAGCTA
* *
12012121 TT-CCGGTGGTGGTCCGGCGAGCT-
1 TTCCCGGTGGTGCTCCGACGAGCTA
**
12012144 TTCCCGGCAGTGCTCCG
1 TTCCCGGTGGTGCTCCG
12012161 GTGAGCCATC
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
23 2 0.06
24 28 0.88
25 2 0.06
ACGTcount: A:0.08, C:0.31, G:0.34, T:0.28
Consensus pattern (25 bp):
TTCCCGGTGGTGCTCCGACGAGCTA
Found at i:12012848 original size:128 final size:127
Alignment explanation
Indices: 12012449--12013223 Score: 926
Period size: 128 Copynumber: 6.1 Consensus size: 127
12012439 TGGATATGCA
* *
12012449 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCA
1 GGAGCCTCGG-GACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG-CACCATCGGCA
*
12012514 ACCTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
64 ACCTAGGCCCCTGGTCATGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* ** *
12012578 AGAGCCTCAGACACCATCGG-AACCTAGGCCCCTGGTCGTGCGGGAG-CTCAGACACCATCGGCA
1 GGAGCCTC-GGGACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTC-GGCACCATCGGCA
**
12012641 ACCTAGGCCCCTGGTTGTGCGGGAGCCTCGGG-ACCATCGGCAACCTAGGCCCTTGGTCGTGCG
64 ACCTAGGCCCCTGGTCATGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
12012704 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCATGCGAGAGCCTCTGGCACCATCGGCA
1 GGAGCCTCGGG-ACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTC-GGCACCATCGGCA
* * * *
12012769 ACCTAGGCCCCTGGTCATGCGAGAGCCTCTGGCACCATCGGCAACCTAGGCCCCTGGTTGTGCG
64 ACCTAGGCCCCTGGTCATGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
12012833 GGAGCCTCGGGACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAA
1 GGAGCCTCGGGACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAA
* * *
12012898 CCTAGGCCCCTGGTCATGCGAGAGCCTCTGGCACCATCGGCACCCTAGGCCCTTGGTCGTGCG
65 CCTAGGCCCCTGGTCATGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
12012961 AGAGCCTCGGGACCATCGGC-ACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGACACCATCGGC-A
1 GGAGCCTCGGGACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG-CACCATCGGCAA
* ** * * *
12013024 CCTTGGTACTTGG--ATGTACGGGAGCCTCGGGCACCATCGGTAACCTATGCCCTTGGTCGTGCG
65 CCTAGGCCCCTGGTCATG--CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * ** * *
12013087 GAAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTCGGAT-GTGCGGGAGCCTCGAGCAGCATTGG
1 GGAGCCTCGGG-ACCATCGGCAACCTAGGCCCCT-GG-TCGTGCGGGAGCCTCG-GCACCATCGG
* ** * * * * * *
12013150 C-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATAGGCAACCTAGGACGTTGGAT-GT
62 CAACCTAGGCCCCTGG-TCATGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGT
12013212 GCG
125 GCG
*
12013215 GGTGCCTCG
1 GGAGCCTCG
12013224 AGTAGGAGGG
Statistics
Matches: 571, Mismatches: 59, Indels: 33
0.86 0.09 0.05
Matches are distributed among these distances:
124 3 0.01
125 1 0.00
126 107 0.19
127 120 0.21
128 278 0.49
129 59 0.10
130 3 0.01
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.17
Consensus pattern (127 bp):
GGAGCCTCGGGACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGCACCATCGGCAAC
CTAGGCCCCTGGTCATGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
Found at i:12013101 original size:212 final size:211
Alignment explanation
Indices: 12012449--12013200 Score: 948
Period size: 212 Copynumber: 3.5 Consensus size: 211
12012439 TGGATATGCA
*
12012449 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACCATCGGCA
*
12012514 ACCTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA
65 ACCTAGGCCCTTGGTCATGCGAGAGCCTCGGG-ACCATCGGCAACCTAGGCCCTTGGTCGTGCGA
* * * *
12012579 GAGCCTCAGACACCATCGGAACCTAGGCCCCTGGTCGTGCGGGAG-CTCAGACACCATCGGCAAC
129 GAGCCTCGGACACCATCGGCACCTAGGCCCCTGGT-GTGCGGGAGCCTCGGGCACCATCGGCAAC
*
12012643 CTAGGCCCCTGGTTGTGCG
193 CTAGGCCCCTGGTCGTGCG
12012662 GGAGCCTCGGG-ACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCA
* * * *
12012726 ACCTAGGCCCCTGGTCATGCGAGAGCCTCTGGCACCATCGGCAACCTAGGCCCCTGGTCATGCGA
65 ACCTAGGCCCTTGGTCATGCGAGAGCCTC-GGGACCATCGGCAACCTAGGCCCTTGGTCGTGCGA
12012791 GAGCCTCTGG-CACCATCGGCAACCTAGGCCCCTGGTTGTGCGGGAGCCTCGGG-ACCATCGGCA
129 GAGCCTC-GGACACCATCGGC-ACCTAGGCCCCTGG-TGTGCGGGAGCCTCGGGCACCATCGGCA
12012854 ACCTAGGCCCCTGGTCGTGCG
191 ACCTAGGCCCCTGGTCGTGCG
* * * *
12012875 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCATGCGAGAGCCTCTGGCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCA
* *
12012940 CCCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGACCATCGGC-ACCTAGGCCCTTGGTCGTGC-AG
65 ACCTAGGCCCTTGGTCATGCGAGAGCCTCGGGACCATCGGCAACCTAGGCCCTTGGTCGTGCGA-
* ** * * *
12013003 GAGCCTCGGACACCATCGGCACCTTGGTACTTGGATGTACGGGAGCCTCGGGCACCATCGGTAAC
129 GAGCCTCGGACACCATCGGCACCTAGGCCCCTGG-TGTGCGGGAGCCTCGGGCACCATCGGCAAC
* *
12013068 CTATGCCCTTGGTCGTGCG
193 CTAGGCCCCTGGTCGTGCG
* * * * * *
12013087 GAAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTCGGAT-GTGCGGGAGCCTCGAGCAGCATTGG
1 GGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCG-GCACCATCGG
* ** * * * *
12013150 C-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATAGGCAACCTAGG
63 CAACCTAGGCCCTTGG-TCATGCGAGAGCCTCGG-GACCATCGGCAACCTAGG
12013201 ACGTTGGATG
Statistics
Matches: 475, Mismatches: 48, Indels: 32
0.86 0.09 0.06
Matches are distributed among these distances:
211 60 0.13
212 238 0.50
213 98 0.21
214 79 0.17
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.17
Consensus pattern (211 bp):
GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAA
CCTAGGCCCTTGGTCATGCGAGAGCCTCGGGACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGA
GCCTCGGACACCATCGGCACCTAGGCCCCTGGTGTGCGGGAGCCTCGGGCACCATCGGCAACCTA
GGCCCCTGGTCGTGCG
Found at i:12013222 original size:43 final size:42
Alignment explanation
Indices: 12012401--12013223 Score: 896
Period size: 43 Copynumber: 19.3 Consensus size: 42
12012391 GACGTCAGTG
* * * *
12012401 GTGCGAGAGCCTCGAGCAGCATCGGC-ACCTTGGTGCCTTGGAT-
1 GTGCGGGAGCCTCG-GCACCATCGGCAACCTAGG-CCCTTGG-TC
* *
12012444 ATGCAGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTC
12012487 GTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTC
*
12012530 ATGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
12012573 GTGCGAGAGCCTCAGACACCATCGG-AACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
12012615 GTGCGGGAG-CTCAGACACCATCGGCAACCTAGGCCCCTGGTT
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTC
*
12012657 GTGCGGGAGCCTCGGGACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
*
12012699 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
12012742 ATGCGAGAGCCTCTGGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
12012785 ATGCGAGAGCCTCTGGCACCATCGGCAACCTAGGCCCCTGGTT
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTC
* *
12012828 GTGCGGGAGCCTCGGGACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
12012870 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
12012913 ATGCGAGAGCCTCTGGCACCATCGGCACCCTAGGCCCTTGGTC
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTC
* *
12012956 GTGCGAGAGCCTCGGGACCATCGGC-ACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
* * **
12012997 GTGCAGGAGCCTCGGACACCATCGGC-ACCTTGGTACTTGGAT-
1 GTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGG-TC
* * *
12013039 GTACGGGAGCCTCGGGCACCATCGGTAACCTATGCCCTTGGTC
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
12013082 GTGCGGAAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTCGGAT-
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGG-CCCTTGG-TC
* * * **
12013125 GTGCGGGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCG-GCACCATCGGCAACCTAGGCCCTTGG-TC
* * *
12013167 GTGCGGGAGCCTCGGACACCATAGGCAACCTAGGACGTTGGAT-
1 GTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGG-TC
*
12013210 GTGCGGGTGCCTCG
1 GTGCGGGAGCCTCG
12013224 AGTAGGAGGG
Statistics
Matches: 687, Mismatches: 75, Indels: 36
0.86 0.09 0.05
Matches are distributed among these distances:
41 44 0.06
42 215 0.31
43 419 0.61
44 9 0.01
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.18
Consensus pattern (42 bp):
GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:12026886 original size:58 final size:59
Alignment explanation
Indices: 12026808--12026928 Score: 165
Period size: 58 Copynumber: 2.1 Consensus size: 59
12026798 CCCTCCCCAA
* * **
12026808 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTTC-GATACCCAGTAATGAATGAACCG
1 TCCCAAAAGCTAGAATTCAGATACCATTACATGTTCAG-TACCCAACAATGAATGAACCG
* *
12026867 TCCC-AAAGCTAGAATTCAGATACCATTGCATGTTCAGTACCCAACAATGAATGAATCG
1 TCCCAAAAGCTAGAATTCAGATACCATTACATGTTCAGTACCCAACAATGAATGAACCG
12026925 TCCC
1 TCCC
12026929 TGTCCCTGCC
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
58 50 0.91
59 5 0.09
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGCTAGAATTCAGATACCATTACATGTTCAGTACCCAACAATGAATGAACCG
Found at i:12031783 original size:13 final size:13
Alignment explanation
Indices: 12031765--12031791 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
12031755 TGAGGCTGAA
12031765 TGTGTTTTCTTTT
1 TGTGTTTTCTTTT
12031778 TGTGTTTTCTTTT
1 TGTGTTTTCTTTT
12031791 T
1 T
12031792 CTAGTGGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.00, C:0.07, G:0.15, T:0.78
Consensus pattern (13 bp):
TGTGTTTTCTTTT
Found at i:12036702 original size:24 final size:24
Alignment explanation
Indices: 12036656--12036704 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
12036646 ATCGATTCCG
* **
12036656 GCGGTGGTCCGGCGAGCTTTCCCA
1 GCGGTGCTCCGGCGAGCCATCCCA
*
12036680 GCGGTGCTCCGGTGAGCCATCCCA
1 GCGGTGCTCCGGCGAGCCATCCCA
12036704 G
1 G
12036705 AATATAGAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.10, C:0.35, G:0.37, T:0.18
Consensus pattern (24 bp):
GCGGTGCTCCGGCGAGCCATCCCA
Found at i:12037293 original size:212 final size:212
Alignment explanation
Indices: 12036979--12037680 Score: 900
Period size: 212 Copynumber: 3.3 Consensus size: 212
12036969 TGGATATGCA
* * *
12036979 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCAGCCACCATCGGCA
1 GGAGCCTCGG-CACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* * * * *
12037044 ACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCAACCTAGGCCCTTGGTCGTGTGA
65 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCG-
*
12037109 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCATCGGAAC
129 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCATCGGAAC
*
12037174 CTAGGCCCCTGGTTGTGCG
194 CTAGGCCCTTGGTTGTGCG
* * *
12037193 GGAG-CTCGGACACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTTGGG-ACCATCGACA
1 GGAGCCTCGG-CACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* * *
12037256 ACCTAGGCCCCTGGTCGTGGGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTAGTCGTGCCG
65 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTG-CG
* * * *
12037321 GAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAC
129 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCATCGG-AA
*
12037386 CCTAGGCCCTTGGTCGTGCG
193 CCTAGGCCCTTGGTTGTGCG
* * * *
12037406 AGAGCCTCGGGACCATCGG-CACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGC-A
1 GGAGCCTCGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
* ** * *
12037469 CCTTGGTACTTGGAT-GTGCGGGAGCCT-GGGATACCATCGGTGACCTAGGCCCCTGGTCGTGCG
66 CCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG-CACCATCGGTAACCTAGGCCCCTGGTCGTGC-
* ** * *
12037532 GGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGCT
128 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGACACCATCG-G
* *
12037595 AACCTAGGCCTTTGGTCT-TGCC
191 AACCTAGGCCCTTGGT-TGTGCG
12037617 GGAGCCTCGTGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
1 GGAGCCTCG-GCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
12037681 CCCTTGGTGC
Statistics
Matches: 424, Mismatches: 52, Indels: 25
0.85 0.10 0.05
Matches are distributed among these distances:
211 60 0.14
212 230 0.54
213 125 0.29
214 9 0.02
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.18
Consensus pattern (212 bp):
GGAGCCTCGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGGA
GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCATCGGAACCT
AGGCCCTTGGTTGTGCG
Found at i:12037294 original size:255 final size:251
Alignment explanation
Indices: 12036969--12037679 Score: 894
Period size: 255 Copynumber: 2.8 Consensus size: 251
12036959 CTTGGTGCCT
* * * * * *
12036969 TGGATATGCAGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCAGCC
1 TGGATGTGCGGGAGCCTGGGA-ACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGC
12037034 ACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCAACCTAGGCCCTT
65 ACCATCGGCAACCTAGGCCCTTGGTCGTGCG-GAGCCTCGGGCACCATC-GCAACCTAGGCCCTT
*
12037099 GGTCGTGTGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGACA
128 GGTCGTGCGAGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG-CA
* * *
12037164 CCATCGGAACCTAGGCCCCTGGTTGTGCGGGAG-CTCGGACACCATCGGTAACCTAGGCCCC
191 CCATCGGAACCTAGGCCCCTGGTCGTACGGGAGCCTCGGACACCATCGG-AACCTAGGCACC
* *
12037225 TGG-TCGTGCGGGAGCCTTGGG-ACCATCGACAACCTAGGCCCCTGGTCGTGGGGGAGCCTCGGG
1 TGGAT-GTGCGGGAGCC-TGGGAACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGG
* * * * *
12037288 CACCATCGGTAACCTAGGCCCCTAGTCGTGCCGGAGCCTCGGGCACCATCGGCACCCTAGGCCCC
64 CACCATCGGCAACCTAGGCCCTTGGTCGTG-CGGAGCCTCGGGCACCATC-GCAACCTAGGCCCT
* *
12037353 TGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGA
127 TGGTCGTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCA
* * * * * * *
12037418 CCATCGGCACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCACCTTGGTACT
191 CCATCGGAACCTAGGCCCCTGGTCGTACGGGAGCCTCGGACACCATCGGAACCTAGGCACC
**
12037479 TGGATGTGCGGGAGCCTGGGATACCATCGGTGACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGC
1 TGGATGTGCGGGAGCCTGGGA-ACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGC
* ** * *
12037544 ACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGCTAACCTAGGCCTT
65 ACCATCGGCAACCTAGGCCCTTGG-TCGTGC-GGAGCCTCGGGCACCATCGC-AACCTAGGCCCT
* * *
12037607 TGGTCTTGCCG-GAGCCTCGTGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
127 TGGTCGTG-CGAGAGCCTCG-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GG
12037671 CACCATCGG
189 CACCATCGG
12037680 CCCCTTGGTG
Statistics
Matches: 395, Mismatches: 46, Indels: 29
0.84 0.10 0.06
Matches are distributed among these distances:
253 8 0.02
254 141 0.36
255 227 0.57
256 16 0.04
257 3 0.01
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (251 bp):
TGGATGTGCGGGAGCCTGGGAACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCA
CCATCGGCAACCTAGGCCCTTGGTCGTGCGGAGCCTCGGGCACCATCGCAACCTAGGCCCTTGGT
CGTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATC
GGAACCTAGGCCCCTGGTCGTACGGGAGCCTCGGACACCATCGGAACCTAGGCACC
Found at i:12037789 original size:43 final size:43
Alignment explanation
Indices: 12036979--12037773 Score: 866
Period size: 43 Copynumber: 18.7 Consensus size: 43
12036969 TGGATATGCA
12036979 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
12037022 GGAGCCTCAGCCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
12037065 AGAGCCTCGGGCACCATCAGCAACCTAGGCCCTTGGTCGTGTG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
12037108 AGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
12037151 AGAGCCTCGGACACCATCGG-AACCTAGGCCCCTGGTTGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
12037193 GGAG-CTCGGACACCATCGGTAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * *
12037235 GGAGCCTTGG-GACCATCGACAACCTAGGCCCCTGGTCGTGGG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * *
12037277 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTAGTCGTGCC
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
12037320 GGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
12037363 AGAGCCTCGGGCACCATCGGCACCCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
12037406 AGAGCCTCGG-GACCATCGGC-ACCTAGGCCCTTGGTCGTACG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * **
12037447 GGAGCCTCGGGCACCATCGGC-ACCTTGGTACTTGGAT-GTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * ** *
12037489 GGAGCCTGGGATACCATCGGTGACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * **
12037532 GGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * *
12037574 GGAGCCTCGGACACCATC-GCTAACCTAGGCCTTTGGTCTTGCC
1 GGAGCCTCGGACACCATCGGC-AACCTAGGCCCTTGGTCGTGCG
*
12037617 GGAGCCTCGTG-CACCATCGGTAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCG-GACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * *
12037660 GGAGCCTCGGGCACCATCGGC-CCCTTGGTGCCTCGGAT-GTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGG-CCCTTGG-TCGTGCG
* * * **
12037703 GGAGCCTC-GAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* *
12037745 GGAGTCTCGGACACCATAGGCAACCTAGG
1 GGAGCCTCGGACACCATCGGCAACCTAGG
12037774 ACGTTGGATG
Statistics
Matches: 649, Mismatches: 84, Indels: 38
0.84 0.11 0.05
Matches are distributed among these distances:
41 45 0.07
42 202 0.31
43 399 0.61
44 3 0.00
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (43 bp):
GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
Found at i:12041581 original size:24 final size:24
Alignment explanation
Indices: 12041482--12041583 Score: 98
Period size: 24 Copynumber: 4.2 Consensus size: 24
12041472 CTGGTACGGT
** *
12041482 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGCGGTGCTCCGGTGAGCCA
* * *
12041506 TTCCGGCGGTCCTCCGAG-GATCCA
1 TCCCGGCGGTGCTCCG-GTGAGCCA
* * **
12041530 TTCCGGCGGTGGTCCGGTGAGCTT
1 TCCCGGCGGTGCTCCGGTGAGCCA
12041554 TCCCGGCGGTGCTCCGGTGAGCCA
1 TCCCGGCGGTGCTCCGGTGAGCCA
12041578 TCCCGG
1 TCCCGG
12041584 AATATAGAAA
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
23 1 0.02
24 63 0.98
ACGTcount: A:0.09, C:0.36, G:0.34, T:0.21
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGTGAGCCA
Found at i:12041876 original size:43 final size:42
Alignment explanation
Indices: 12041829--12042066 Score: 212
Period size: 43 Copynumber: 5.5 Consensus size: 42
12041819 CCTCGAGCAG
* *
12041829 CATCGGCACCTTGGTGCCTTGGAT-ATGTAGGAGCCTCGGACAC
1 CATCGGCACCTAGG-CCCTTGG-TCATGTAGGAGCCTCGGACAC
* * *
12041872 CATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCAC
1 CATCGGC-ACCTAGGCCCTTGGTCATGTAGGAGCCTCGGACAC
* * * **
12041915 CATCGGCAACCTAGGCCTTTGGTCGTG-CGAGAGCCTCGGGGAC
1 CATCGGC-ACCTAGGCCCTTGGTCATGTAG-GAGCCTCGGACAC
* *
12041958 CATCGGCAACCTAGGCCCTTGGTCGTG-CGAGAGCCTCGGACAC
1 CATCGGC-ACCTAGGCCCTTGGTCATGTAG-GAGCCTCGGACAC
* * ** *
12042001 CATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCAGACAC
1 CATCGGC-ACCTAGGCCCTTGGTCATGTAGGAGCCTCGGACAC
* *
12042044 CATCGGAACCTAGGCCCCTGGTC
1 CATCGGCACCTAGGCCCTTGGTC
12042067 GTGCCGCCCC
Statistics
Matches: 176, Mismatches: 15, Indels: 9
0.88 0.08 0.05
Matches are distributed among these distances:
42 18 0.10
43 151 0.86
44 7 0.04
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.18
Consensus pattern (42 bp):
CATCGGCACCTAGGCCCTTGGTCATGTAGGAGCCTCGGACAC
Found at i:12041919 original size:86 final size:84
Alignment explanation
Indices: 12041810--12042070 Score: 267
Period size: 86 Copynumber: 3.0 Consensus size: 84
12041800 GACGTTAGTG
* * *
12041810 GTGCGAGAACCTCGAGCAGCATCGGC-ACCTTGGTGCCTTGGATATGTAGGAGCCTCGGACACCA
1 GTGCGAGAGCCTCGGGCACCATCGGCAACCTTGG-GCCTTGG-T-TGTAGGAGCCTCGGACACCA
12041874 TCGGCAACCTAGGCCCTTGGTC
63 TCGGCAACCTAGGCCCTTGGTC
* * * * * **
12041896 GTGTGGGAGCCTCGGGCACCATCGGCAACC-TAGGCCTTTGGTCGTGCGAGAGCCTCGGGGACCA
1 GTGCGAGAGCCTCGGGCACCATCGGCAACCTTGGGCC-TTGGTTGT-AG-GAGCCTCGGACACCA
12041960 TCGGCAACCTAGGCCCTTGGTC
63 TCGGCAACCTAGGCCCTTGGTC
* * * * ** *
12041982 GTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCAGACACCAT
1 GTGCGAGAGCCTCGGGCACCATCGGCAACCTTGGGCCTTGGT--TGTAGGAGCCTCGGACACCAT
*
12042047 CGG-AACCTAGGCCCCTGGTC
64 CGGCAACCTAGGCCCTTGGTC
12042067 GTGC
1 GTGC
12042071 CGCCCCCTCA
Statistics
Matches: 144, Mismatches: 24, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
84 2 0.01
85 25 0.17
86 109 0.76
87 7 0.05
88 1 0.01
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.18
Consensus pattern (84 bp):
GTGCGAGAGCCTCGGGCACCATCGGCAACCTTGGGCCTTGGTTGTAGGAGCCTCGGACACCATCG
GCAACCTAGGCCCTTGGTC
Found at i:12041952 original size:129 final size:128
Alignment explanation
Indices: 12041810--12042070 Score: 339
Period size: 129 Copynumber: 2.0 Consensus size: 128
12041800 GACGTTAGTG
* * * *
12041810 GTGCGAGAACCTCGAGCAGCATCGGC-ACCTTGGTGCCTTGGAT-ATGTAG-GAGCCTCGGACAC
1 GTGCGAGAACCTCGAGCACCATCGGCAACCTAGG-CCCTTGG-TCGTG-AGAGAGCCTCGGACAC
* * * * **
12041872 CATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATCGGCAACCTAGGCCTTTGG
63 CATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCAGACACCATCGG-AACCTAGGCCCCTGG
12041937 TC
127 TC
* * * *
12041939 GTGCGAGAGCCTCGGGGACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCAT
1 GTGCGAGAACCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGAGAGAGCCTCGGACACCAT
12042004 CGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCAGACACCATCGGAACCTAGGCCCCTGGTC
66 CGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCAGACACCATCGGAACCTAGGCCCCTGGTC
12042067 GTGC
1 GTGC
12042071 CGCCCCCTCA
Statistics
Matches: 115, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
128 21 0.18
129 88 0.77
130 6 0.05
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.18
Consensus pattern (128 bp):
GTGCGAGAACCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGAGAGAGCCTCGGACACCAT
CGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCAGACACCATCGGAACCTAGGCCCCTGGTC
Found at i:12042688 original size:58 final size:59
Alignment explanation
Indices: 12042568--12042681 Score: 185
Period size: 58 Copynumber: 1.9 Consensus size: 59
12042558 CTCTCTCCAA
* * *
12042568 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAATAATGAATGAACTG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAAAGAACTG
*
12042627 TCCC-AAAGCTAGAATTCAGATACCGTTGCATGTTCGGTACCCAACAATGAAAGAA
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAAAGAA
12042682 TCGTCCCTGT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
58 47 0.92
59 4 0.08
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAAAGAACTG
Found at i:12049346 original size:24 final size:24
Alignment explanation
Indices: 12049270--12049346 Score: 66
Period size: 24 Copynumber: 3.2 Consensus size: 24
12049260 CCGGTTAGGT
** *
12049270 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGCGGTGCTCCGGTGAGCCA
* * * *
12049294 TTCCGGCAGTGGTCCGGTGAG-CT
1 TCCCGGCGGTGCTCCGGTGAGCCA
*
12049317 TACCCGGCGGTACTCCGGTGAGCCA
1 T-CCCGGCGGTGCTCCGGTGAGCCA
12049342 TCCCG
1 TCCCG
12049347 AAATATAGAA
Statistics
Matches: 39, Mismatches: 12, Indels: 4
0.71 0.22 0.07
Matches are distributed among these distances:
23 2 0.05
24 35 0.90
25 2 0.05
ACGTcount: A:0.12, C:0.36, G:0.32, T:0.19
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGTGAGCCA
Found at i:12060099 original size:10 final size:10
Alignment explanation
Indices: 12060084--12060119 Score: 54
Period size: 10 Copynumber: 3.4 Consensus size: 10
12060074 GTCTTTCTTC
12060084 CCACCAAATT
1 CCACCAAATT
12060094 CCACCAACAATT
1 CCACC-A-AATT
12060106 CCACCAAATT
1 CCACCAAATT
12060116 CCAC
1 CCAC
12060120 TCTTTCTTCG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 13 0.54
11 2 0.08
12 9 0.38
ACGTcount: A:0.39, C:0.44, G:0.00, T:0.17
Consensus pattern (10 bp):
CCACCAAATT
Found at i:12061468 original size:35 final size:34
Alignment explanation
Indices: 12061427--12061497 Score: 97
Period size: 35 Copynumber: 2.1 Consensus size: 34
12061417 GTCTGGGATC
* *
12061427 GCATATCTTTGAAGATCCCCTTCCATATTTGCCAA
1 GCATATCCTTGAAGATCACCTTCCATATTT-CCAA
* *
12061462 GCATATCCTTGAAGATTACTTTCCATATTTCCAA
1 GCATATCCTTGAAGATCACCTTCCATATTTCCAA
12061496 GC
1 GC
12061498 TCCGAGATGG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
34 6 0.19
35 26 0.81
ACGTcount: A:0.27, C:0.27, G:0.11, T:0.35
Consensus pattern (34 bp):
GCATATCCTTGAAGATCACCTTCCATATTTCCAA
Found at i:12064949 original size:55 final size:55
Alignment explanation
Indices: 12064859--12064972 Score: 194
Period size: 55 Copynumber: 2.1 Consensus size: 55
12064849 GAGTCCTCCC
*
12064859 AATCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAATAATGAATG
1 AATCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAA-AATGAATG
*
12064915 AATCCC-AAAGCTAGAATTCAGATACCGTTGCATGTTCGGTACCCAAAATGAATG
1 AATCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAAAATGAATG
12064969 AATC
1 AATC
12064973 GTCCTGTCCC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
54 12 0.21
55 38 0.68
56 6 0.11
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.25
Consensus pattern (55 bp):
AATCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAAAATGAATG
Found at i:12065876 original size:120 final size:120
Alignment explanation
Indices: 12065709--12066400 Score: 771
Period size: 120 Copynumber: 5.7 Consensus size: 120
12065699 TGGATATGCA
12065709 GGAGCCTCGGACA-CATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAA
1 GGAGCCTCGGACACCATCGGCAA-CTAGGCCC-TGGTCGTGC-GGAGCCTCGGGCACCATCGGAA
12065773 CCTAGGCCCTTGGTCGTGCGGAGCCTCGAC-CCATCGGCAACCTAGGCCCTGGTCGTGC
63 CCTAGGCCC-TGGTCGTGCGGAGCCTCGACACCATCGGCAACCTAGGCCCTGGTCGTGC
* ** *
12065831 GAGAGCCTCGGGCACCATC-GCAA-TAGGCCCTGGTCGTGCGAGAGCCTCGGATAGCATCGGAAC
1 G-GAGCCTCGGACACCATCGGCAACTAGGCCCTGGTCGTGCG-GAGCCTCGGGCACCATCGGAAC
12065894 CTAGGCCCTGGTCGTGCGAGAGCCTCGACACCATCGGCAACCTAGGCCCTGGTCGTGC
64 CTAGGCCCTGGTCGTGCG-GAGCCTCGACACCATCGGCAACCTAGGCCCTGGTCGTGC
*
12065952 GGGAG-CTCGGACACCATC-GCAACCTAGGCCCTGGTCGTGCGGAGCCTCGGG-ACCATCGCAAC
1 -GGAGCCTCGGACACCATCGGCAA-CTAGGCCCTGGTCGTGCGGAGCCTCGGGCACCATCGGAAC
* *
12066014 CTAGGCCCTGGTCGTGCGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGC
64 CTAGGCCCTGGTCGTGCGGAGCCTC-GACACCATCGGCAACCTAGG-CCCTGGTCGTGC
* *
12066073 -GAGCCTCGGGCACCATCGGCACCTAGGCCCTGGTC-TGCGAGAGCCTCGGGCACCATC-GACAC
1 GGAGCCTCGGACACCATCGGCAACTAGGCCCTGGTCGTGCG-GAGCCTCGGGCACCATCGGA-AC
* * *
12066135 C-A-GCCCTGGTCGTGCGAGAGCCT-G-GACCATCGG-TACCTAGGCCCTTGGTCGTAC
64 CTAGGCCCTGGTCGTGCG-GAGCCTCGACACCATCGGCAACCTAGGCCC-TGGTCGTGC
* * * * * *
12066189 GGAGCCTCGGGCACCATCAGCACCTTGGTGCTTGGAT-GTGC-GAGCCT-GGGACACCATCGGTA
1 GGAGCCTCGGACACCATCGGCAACTAGG-CCCTGG-TCGTGCGGAGCCTCGGG-CACCATCGG-A
* * * * *
12066251 A-CTA-GCCCTGGTCGTGCGGAGCCTGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGC
62 ACCTAGGCCCTGGTCGTGCGGAGCCTCGACACCATCGGCAACCTAGG-CCCTGG-TCGTGC
* * *
12066308 GGGAGCCTCGGACACCATCGGCAACCTAGGCCTTGGTCGTGCCGAGCCTCGGGCACCATCGTAAC
1 -GGAGCCTCGGACACCATCGGCAA-CTAGGCCCTGGTCGTGCGGAGCCTCGGGCACCATCGGAAC
12066373 CTAGGCCCTTGGTCGTGCGGGAGCCTCG
64 CTAGGCCC-TGGTCGTGC-GGAGCCTCG
12066401 GGCACATGGC
Statistics
Matches: 498, Mismatches: 33, Indels: 76
0.82 0.05 0.13
Matches are distributed among these distances:
115 3 0.01
116 17 0.03
117 53 0.11
118 23 0.05
119 65 0.13
120 183 0.37
121 92 0.18
122 26 0.05
123 24 0.05
124 12 0.02
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.17
Consensus pattern (120 bp):
GGAGCCTCGGACACCATCGGCAACTAGGCCCTGGTCGTGCGGAGCCTCGGGCACCATCGGAACCT
AGGCCCTGGTCGTGCGGAGCCTCGACACCATCGGCAACCTAGGCCCTGGTCGTGC
Found at i:12065911 original size:41 final size:40
Alignment explanation
Indices: 12065709--12066405 Score: 756
Period size: 41 Copynumber: 17.4 Consensus size: 40
12065699 TGGATATGCA
*
12065709 GGAGCCTCGGACA-CATCGGCAACCTAGGCCCTTGGTCGTGC
1 GGAGCCTCGGGCACCATCGG-AACCTAGGCCC-TGGTCGTGC
12065750 GGGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGC
1 -GGAGCCTCGGGCACCATCGGAACCTAGGCCC-TGGTCGTGC
*
12065792 GGAGCCTC-GAC-CCATCGGCAACCTAGGCCCTGGTCGTGC
1 GGAGCCTCGGGCACCATCGG-AACCTAGGCCCTGGTCGTGC
*
12065831 GAGAGCCTCGGGCACCATCGCAA--TAGGCCCTGGTCGTGC
1 G-GAGCCTCGGGCACCATCGGAACCTAGGCCCTGGTCGTGC
** *
12065870 GAGAGCCTCGGATAGCATCGGAACCTAGGCCCTGGTCGTGC
1 G-GAGCCTCGGGCACCATCGGAACCTAGGCCCTGGTCGTGC
*
12065911 GAGAGCCTC-GACACCATCGGCAACCTAGGCCCTGGTCGTGC
1 G-GAGCCTCGGGCACCATCGG-AACCTAGGCCCTGGTCGTGC
* *
12065952 GGGAG-CTCGGACACCATCGCAACCTAGGCCCTGGTCGTGC
1 -GGAGCCTCGGGCACCATCGGAACCTAGGCCCTGGTCGTGC
*
12065992 GGAGCCTCGGG-ACCATCGCAACCTAGGCCCTGGTCGTGC
1 GGAGCCTCGGGCACCATCGGAACCTAGGCCCTGGTCGTGC
*
12066031 GGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGC
1 GGAGCCTCGGGCACCATCGG-AACCTAGG-CCCTGGTCGTGC
*
12066073 -GAGCCTCGGGCACCATCGGCACCTAGGCCCTGGTC-TGC
1 GGAGCCTCGGGCACCATCGGAACCTAGGCCCTGGTCGTGC
12066111 GAGAGCCTCGGGCACCATC-GACACC-A-GCCCTGGTCGTGC
1 G-GAGCCTCGGGCACCATCGGA-ACCTAGGCCCTGGTCGTGC
* *
12066150 GAGAGCCT--GG-ACCATCGGTACCTAGGCCCTTGGTCGTAC
1 G-GAGCCTCGGGCACCATCGGAACCTAGGCCC-TGGTCGTGC
* * * * *
12066189 GGAGCCTCGGGCACCATCAGCACCTTGGTGCTTGGAT-GTGC
1 GGAGCCTCGGGCACCATCGGAACCTAGG-CCCTGG-TCGTGC
12066230 -GAGCCT-GGGACACCATCGGTAA-CTA-GCCCTGGTCGTGC
1 GGAGCCTCGGG-CACCATCGG-AACCTAGGCCCTGGTCGTGC
* * * *
12066268 GGAGCCT-GGGCACCATCGGCACCTTGGTGCTTGGAT-GTGC
1 GGAGCCTCGGGCACCATCGGAACCTAGG-CCCTGG-TCGTGC
* *
12066308 GGGAGCCTCGGACACCATCGGCAACCTAGGCCTTGGTCGTGC
1 -GGAGCCTCGGGCACCATCGG-AACCTAGGCCCTGGTCGTGC
* *
12066350 CGAGCCTCGGGCACCATCGTAACCTAGGCCCTTGGTCGTGC
1 GGAGCCTCGGGCACCATCGGAACCTAGGCCC-TGGTCGTGC
12066391 GGGAGCCTCGGGCAC
1 -GGAGCCTCGGGCAC
12066406 ATGGCACCTT
Statistics
Matches: 571, Mismatches: 43, Indels: 82
0.82 0.06 0.12
Matches are distributed among these distances:
36 9 0.02
37 6 0.01
38 41 0.07
39 139 0.24
40 126 0.22
41 151 0.26
42 87 0.15
43 12 0.02
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.17
Consensus pattern (40 bp):
GGAGCCTCGGGCACCATCGGAACCTAGGCCCTGGTCGTGC
Found at i:12065942 original size:161 final size:160
Alignment explanation
Indices: 12065709--12066400 Score: 737
Period size: 161 Copynumber: 4.3 Consensus size: 160
12065699 TGGATATGCA
* *
12065709 GGAGCCTCGGACA-CATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-A
1 GGAGCCTCGGGCACCATCGG-AACCTAGGCCC-TGGTCGTGC-GGAGCCTC-GACACCATCGGCA
12065772 ACCTAGGCCCTTGGTCGTGCGGAGCCTC-GAC-CCATCGGCAACCTAGGCCCTGGTCGTGCGAGA
62 ACCTAGGCCC-TGGTCGTGCGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTGGTCGTGCGAGA
12065835 GCCTCGGGCACCATC-GCAA-TAGGCCCTGGTCGTGC
125 GCCTCGGG-ACCATCGGCAACTAGGCCCTGGTCGTGC
** *
12065870 GAGAGCCTCGGATAGCATCGGAACCTAGGCCCTGGTCGTGCGAGAGCCTCGACACCATCGGCAAC
1 G-GAGCCTCGGGCACCATCGGAACCTAGGCCCTGGTCGTGCG-GAGCCTCGACACCATCGGCAAC
12065935 CTAGGCCCTGGTCGTGCGGGAG-CTCGGACACCATC-GCAACCTAGGCCCTGGTCGTGCG-GAGC
64 CTAGGCCCTGGTCGTGC-GGAGCCTCGGACACCATCGGC-ACCTAGGCCCTGGTCGTGCGAGAGC
12065997 CTCGGGACCATC-GCAACCTAGGCCCTGGTCGTGC
127 CTCGGGACCATCGGCAA-CTAGGCCCTGGTCGTGC
* *
12066031 GGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGC-GAGCCTCGGGCACCATCGGC-A
1 GGAGCCTCGGGCACCATCGG-AACCTAGG-CCCTGGTCGTGCGGAGCCTC-GACACCATCGGCAA
* *
12066094 CCTAGGCCCTGGTC-TGCGAGAGCCTCGGGCACCATCGACACC-A-GCCCTGGTCGTGCGAGAGC
63 CCTAGGCCCTGGTCGTGCG-GAGCCTCGGACACCATCGGCACCTAGGCCCTGGTCGTGCGAGAGC
* * *
12066156 CT--GGACCATCGGTACCTAGGCCCTTGGTCGTAC
127 CTCGGGACCATCGGCAACTAGGCCC-TGGTCGTGC
* * * * * * *
12066189 GGAGCCTCGGGCACCATCAGCACCTTGGTGCTTGGAT-GTGC-GAGCCTGGGACACCATCGGTAA
1 GGAGCCTCGGGCACCATCGGAACCTAGG-CCCTGG-TCGTGCGGAGCCT-CGACACCATCGGCAA
* * * * *
12066252 -CTA-GCCCTGGTCGTGCGGAGCCT-GGGCACCATCGGCACCTTGGTGCTTGGAT-GTGCGGGAG
63 CCTAGGCCCTGGTCGTGCGGAGCCTCGGACACCATCGGCACCTAGG-CCCTGG-TCGTGCGAGAG
* *
12066313 CCTCGGACACCATCGGCAACCTAGGCCTTGGTCGTGC
126 CCTCGG-GACCATCGGCAA-CTAGGCCCTGGTCGTGC
* *
12066350 CGAGCCTCGGGCACCATCGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
1 GGAGCCTCGGGCACCATCGGAACCTAGGCCC-TGGTCGTGC-GGAGCCTCG
12066401 GGCACATGGC
Statistics
Matches: 457, Mismatches: 40, Indels: 67
0.81 0.07 0.12
Matches are distributed among these distances:
155 15 0.03
156 15 0.03
157 53 0.12
158 61 0.13
159 24 0.05
160 89 0.19
161 141 0.31
162 47 0.10
163 12 0.03
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.17
Consensus pattern (160 bp):
GGAGCCTCGGGCACCATCGGAACCTAGGCCCTGGTCGTGCGGAGCCTCGACACCATCGGCAACCT
AGGCCCTGGTCGTGCGGAGCCTCGGACACCATCGGCACCTAGGCCCTGGTCGTGCGAGAGCCTCG
GGACCATCGGCAACTAGGCCCTGGTCGTGC
Found at i:12066476 original size:42 final size:40
Alignment explanation
Indices: 12066390--12066482 Score: 116
Period size: 42 Copynumber: 2.3 Consensus size: 40
12066380 CTTGGTCGTG
* *
12066390 CGGGAGCCTCGGGCACATGGCACCTTGGTGCACGGATGTA
1 CGGGAGCCTCGAGCACATGGCACCTTGGTGCACGGATGCA
* *
12066430 CGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTC-GATGCC
1 CGGGAGCCTCGAGCA-CA-TGGCACCTTGGTGC-ACGGATGCA
12066472 CGGGAGCCTCG
1 CGGGAGCCTCG
12066483 GACACCATAG
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
40 14 0.30
41 2 0.04
42 29 0.63
43 1 0.02
ACGTcount: A:0.15, C:0.30, G:0.37, T:0.18
Consensus pattern (40 bp):
CGGGAGCCTCGAGCACATGGCACCTTGGTGCACGGATGCA
Found at i:12070397 original size:13 final size:12
Alignment explanation
Indices: 12070355--12070400 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
12070345 CGTAGCAAAT
*
12070355 TTTTTTTTTCAA
1 TTTTTTTTTCGA
*
12070367 TTTTTTGTTCGA
1 TTTTTTTTTCGA
*
12070379 ATTTTTTTTCGA
1 TTTTTTTTTCGA
12070391 TTCTTTTTTT
1 TT-TTTTTTT
12070401 TTTTTGAATC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
12 21 0.75
13 7 0.25
ACGTcount: A:0.11, C:0.09, G:0.07, T:0.74
Consensus pattern (12 bp):
TTTTTTTTTCGA
Found at i:12077342 original size:25 final size:26
Alignment explanation
Indices: 12077300--12077350 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
12077290 GTAGATTCAA
12077300 AAAAAAAAGAAATCAAAAAAAAATTG
1 AAAAAAAAGAAATCAAAAAAAAATTG
* *
12077326 AAAAAAAA-AATTGAAAAAAAAATTG
1 AAAAAAAAGAAATCAAAAAAAAATTG
12077351 CATACGGTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.76, C:0.02, G:0.08, T:0.14
Consensus pattern (26 bp):
AAAAAAAAGAAATCAAAAAAAAATTG
Found at i:12077350 original size:12 final size:13
Alignment explanation
Indices: 12077314--12077347 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
12077304 AAAAGAAATC
12077314 AAAAAAAAATTGA
1 AAAAAAAAATTGA
12077327 AAAAAAAAATTGA
1 AAAAAAAAATTGA
12077340 AAAAAAAA
1 AAAAAAAA
12077348 TTGCATACGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.82, C:0.00, G:0.06, T:0.12
Consensus pattern (13 bp):
AAAAAAAAATTGA
Found at i:12087178 original size:58 final size:59
Alignment explanation
Indices: 12087087--12087207 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
12087077 CCCTCCCCAA
* *
12087087 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAATAATGAATGAACCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCG
* *
12087146 TCCC-AAAGCTAGAATTCAGATACCGTTGCATGTTCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCG
12087204 TCCC
1 TCCC
12087208 TGTCCCTCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 54 0.93
59 4 0.07
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCG
Found at i:12087642 original size:24 final size:21
Alignment explanation
Indices: 12087612--12087671 Score: 66
Period size: 21 Copynumber: 2.7 Consensus size: 21
12087602 GGTTAGGTTC
12087612 CCGGCGGTGCTCCGACGATCCATT
1 CCGGCGGTGCTCCG--GA-CCATT
* * *
12087636 CCGGCGGTGGTCCGGAGCTTT
1 CCGGCGGTGCTCCGGACCATT
12087657 CCGGCGGTGCTCCGG
1 CCGGCGGTGCTCCGG
12087672 GAGCCATCCG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
21 17 0.53
22 2 0.06
24 13 0.41
ACGTcount: A:0.07, C:0.35, G:0.38, T:0.20
Consensus pattern (21 bp):
CCGGCGGTGCTCCGGACCATT
Found at i:12087991 original size:43 final size:43
Alignment explanation
Indices: 12087957--12088730 Score: 970
Period size: 43 Copynumber: 18.2 Consensus size: 43
12087947 TGGATATGCA
* *
12087957 GGAGCCTCGGACACCATCAGCAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
12088000 GGAGCCTCGGGCACCATCGGAAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
12088043 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
12088086 AGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
12088129 GGAGCCTCAGACACCATCGG-AACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
12088171 GGAG-CTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
12088213 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
12088256 GGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
12088299 AGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
12088341 AGAGCCTCGGG-ACCATCGGC-ACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* **
12088382 GGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* *
12088424 GGAGCCT-GGGACACCATCGGTAACCTAGG-CCTTGGTCGTGTG
1 GGAGCCTCGGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
12088466 GGAGCCTCGGGCACCTTTGGC-ACCT-TGCTGCTTGGAT-GTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGC-CCTTGG-TCGTGCG
* * **
12088508 GGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGTT
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
12088551 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
12088594 GGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTCGGAT-GTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCG
* * * * **
12088637 GGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * * *
12088679 GGAGCCTCGGACACCATAGGCAACCTAGGACGTTGGAT-GTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
*
12088722 GGTGCCTCG
1 GGAGCCTCG
12088731 AGCAGCAGGG
Statistics
Matches: 655, Mismatches: 59, Indels: 34
0.88 0.08 0.05
Matches are distributed among these distances:
40 1 0.00
41 62 0.09
42 207 0.32
43 382 0.58
44 3 0.00
ACGTcount: A:0.15, C:0.33, G:0.34, T:0.18
Consensus pattern (43 bp):
GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
Found at i:12088223 original size:170 final size:171
Alignment explanation
Indices: 12087957--12088730 Score: 991
Period size: 170 Copynumber: 4.5 Consensus size: 171
12087947 TGGATATGCA
* * *
12087957 GGAGCCTCGGACACCATCAGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAA
1 GGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCA
*
12088022 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA
65 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
12088087 GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
130 GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * *
12088129 GGAGCCTCAGACACCATCGGAACCTAGGCCCCTGGTCGTGCGGGAG-CTCGGACACCATCGGCAA
1 GGAGCCTCGGACACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAA
* *
12088193 CCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGG
66 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
*
12088258 AGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCG
131 AGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * * *
12088299 AGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG-GACCATCGGC-A
1 GGAGCCTCGGACACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAA
* **
12088362 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGG
66 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGG
* * *
12088425 GAGCCT-GGGACACCATCGGTAACCTAGG-CCTTGGTCGTGTG
130 GAGCCTCGGG-CACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * * * * *
12088466 GGAGCCTCGGGCACCTTTGGCACCT-TGCTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGT
1 GGAGCCTCGGACACCATCGGCACCTAGGC-CCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGC
** *
12088529 AACCTAGGCCCTTGGTCGTGTTGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
64 AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* **
12088594 GGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTCGGAT-GTGCG
129 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCT-GG-TCGTGCG
* * * ** *
12088637 GGAGCCTC-GAGCAGCATTGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATAGGC
1 GGAGCCTCGGA-CACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGC
* * *
12088700 AACCTAGGACGTTGGAT-GTGCGGGTGCCTCG
64 AACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
12088731 AGCAGCAGGG
Statistics
Matches: 529, Mismatches: 57, Indels: 33
0.85 0.09 0.05
Matches are distributed among these distances:
166 2 0.00
167 55 0.10
168 47 0.09
169 88 0.17
170 202 0.38
171 114 0.22
172 21 0.04
ACGTcount: A:0.15, C:0.33, G:0.34, T:0.18
Consensus pattern (171 bp):
GGAGCCTCGGACACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAA
CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
AGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
Found at i:12096716 original size:58 final size:59
Alignment explanation
Indices: 12096625--12096745 Score: 181
Period size: 58 Copynumber: 2.1 Consensus size: 59
12096615 CCCTCCCCAA
* * *
12096625 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAATAATGAATGAACCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGATACCCAACAATGAATGAACCG
* * *
12096684 TCCC-AAAGCTAGAATTCAGATACTGTTGCATGTTCGATACCCAACAATGAATGAATCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGATACCCAACAATGAATGAACCG
12096742 TCCC
1 TCCC
12096746 TGTCCCTCCC
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
58 52 0.93
59 4 0.07
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (59 bp):
TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGATACCCAACAATGAATGAACCG
Found at i:12097212 original size:24 final size:24
Alignment explanation
Indices: 12097147--12097225 Score: 81
Period size: 24 Copynumber: 3.3 Consensus size: 24
12097137 GCCGGTTAGG
* *
12097147 TTCCCGGCGGTGCTCCGACGATCCA
1 TTCCCGGCGGTGCTCCGGCGA-GCA
* *
12097172 TT-CCGGCGGTGGTCCGGCGAGCT
1 TTCCCGGCGGTGCTCCGGCGAGCA
*
12097195 TTCCCGGCGGTGCTCCGGTGAGCCA
1 TTCCCGGCGGTGCTCCGGCGAG-CA
12097220 -TCCCGG
1 TTCCCGG
12097226 AATATAGAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
23 3 0.07
24 39 0.87
25 3 0.07
ACGTcount: A:0.08, C:0.37, G:0.35, T:0.20
Consensus pattern (24 bp):
TTCCCGGCGGTGCTCCGGCGAGCA
Found at i:12097534 original size:43 final size:43
Alignment explanation
Indices: 12097453--12097535 Score: 98
Period size: 43 Copynumber: 1.9 Consensus size: 43
12097443 ACGTCAGTGG
* * *
12097453 TGCAAGAGCCTCGAGCAGCATCGGCACCTTGGTGCCTTGGATA
1 TGCAAGAGCCTCGAGCACCATCGGCACCTAGGTCCCTTGGATA
*
12097496 TGCAGGAGCCTCG-GACACCATCGGCAACCTAGG-CCCTTGG
1 TGCAAGAGCCTCGAG-CACCATCGGC-ACCTAGGTCCCTTGG
12097536 TCGTGCAGGT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
42 1 0.03
43 27 0.79
44 6 0.18
ACGTcount: A:0.20, C:0.31, G:0.30, T:0.18
Consensus pattern (43 bp):
TGCAAGAGCCTCGAGCACCATCGGCACCTAGGTCCCTTGGATA
Found at i:12098941 original size:25 final size:25
Alignment explanation
Indices: 12098907--12098971 Score: 112
Period size: 25 Copynumber: 2.6 Consensus size: 25
12098897 AAGTCAAAAG
12098907 TCACCGTTTCAATTGTTCCCACCAC
1 TCACCGTTTCAATTGTTCCCACCAC
*
12098932 TCACCGTTTCAATTGTTTCCACCAC
1 TCACCGTTTCAATTGTTCCCACCAC
*
12098957 GCACCGTTTCAATTG
1 TCACCGTTTCAATTG
12098972 ATTTCACTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.20, C:0.35, G:0.11, T:0.34
Consensus pattern (25 bp):
TCACCGTTTCAATTGTTCCCACCAC
Found at i:12099262 original size:48 final size:48
Alignment explanation
Indices: 12099180--12099273 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
12099170 TTTCTTGGCT
* *
12099180 TAAAAACGCCTAAGTCAGCCTAACTTCCACCAATAATGGATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
12099228 TAAAAACGCCTAAGTCAG-CTCAAC-TCGCAACAATAAAGGATTCAAC
1 TAAAAACGCCTAAGTCAGCCT-AACTTC-CAACAATAAAGGATTCAAC
12099274 AGAATTCCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 4 0.10
48 38 0.90
ACGTcount: A:0.40, C:0.28, G:0.13, T:0.19
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:12101778 original size:48 final size:48
Alignment explanation
Indices: 12101696--12101789 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
12101686 TTTCTTGGCT
* *
12101696 TAAAAACGCCTAAGTCAGCCTAACTTCCACCAATAATGGATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
12101744 TAAAAACGCCTAAGTCAG-CTCAAC-TCGCAACAATAAAGGATTCAAC
1 TAAAAACGCCTAAGTCAGCCT-AACTTC-CAACAATAAAGGATTCAAC
12101790 AGAATTCCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 4 0.10
48 38 0.90
ACGTcount: A:0.40, C:0.28, G:0.13, T:0.19
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:12118030 original size:20 final size:20
Alignment explanation
Indices: 12118005--12118043 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
12117995 TATAAGATGT
12118005 AACGGGGTTGAAATAATGGC
1 AACGGGGTTGAAATAATGGC
12118025 AACGGGGTTGAAATAATGG
1 AACGGGGTTGAAATAATGG
12118044 TAACAAAGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.08, G:0.36, T:0.21
Consensus pattern (20 bp):
AACGGGGTTGAAATAATGGC
Found at i:12125471 original size:75 final size:76
Alignment explanation
Indices: 12125350--12125511 Score: 218
Period size: 75 Copynumber: 2.1 Consensus size: 76
12125340 TGGCACAACG
* ** *
12125350 AGTCCCTCCCCAATCCCAAACGGTAGAATTTGAATACTGTTACATGTTCGGTACCCAATAATGAA
1 AGTCCCTCCCCAATCCCAAACGGTAGAATTCGAATACCATTACATGTTCGGTACCCAAAAATGAA
* *
12125415 TGAATCGTCCC
66 TAAATCATCCC
* * * *
12125426 AGTCCCTTCCCAGTCCCAAA-GGTAGAATTCGGATACCATTGCATGTTCGGTACCCAAAAATGAA
1 AGTCCCTCCCCAATCCCAAACGGTAGAATTCGAATACCATTACATGTTCGGTACCCAAAAATGAA
12125490 TAAATCATCCC
66 TAAATCATCCC
*
12125501 TGTCCCTCCCC
1 AGTCCCTCCCC
12125512 TTTTGCAACA
Statistics
Matches: 74, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
75 56 0.76
76 18 0.24
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (76 bp):
AGTCCCTCCCCAATCCCAAACGGTAGAATTCGAATACCATTACATGTTCGGTACCCAAAAATGAA
TAAATCATCCC
Found at i:12140096 original size:43 final size:43
Alignment explanation
Indices: 12139950--12140356 Score: 310
Period size: 43 Copynumber: 9.6 Consensus size: 43
12139940 ACCAAGGTGT
* * *
12139950 CGATGGTGCCCGAGACTCCAGCATGACCAAGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * * ** *
12139993 CGAAGGTGTCCGAGGCTCTCGTAC-ATCCAAGCACCAAGG-TGC
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGC
** * * *
12140035 C-AGTGGTGCTTGAAGCTCCCGTACGACCAAGGGCCTAGGTTGT
1 CGA-TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
*
12140078 CGATGGTGCCTGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* ** *
12140121 TGATGGTGCCCGAGGCTCTAGCACGTCCAA--GCACTAAGG-TGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC-CT-AGGTTGC
* ** * *
12140163 CGATAGTGCCCGAGGCTCTTGCATGACCAAGGGCCTAGGTTAC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
** * *
12140206 CGATGGTGCCCGAGGCTCCTACACAACCAAGGGCCTAGGTTTC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * * * * *** *
12140249 TGATTGT-ACTGAGGCTCTCGCA-AATCCAAACACCAAGG-TGC
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGC
* * *
12140290 CAATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGTTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* *
12140333 CGATGGTGTCTGAGGCTCCCGCAC
1 CGATGGTGCCCGAGGCTCCCGCAC
12140357 ATCGAAGGCA
Statistics
Matches: 280, Mismatches: 70, Indels: 28
0.74 0.19 0.07
Matches are distributed among these distances:
41 11 0.04
42 101 0.36
43 165 0.59
44 3 0.01
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (43 bp):
CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
Found at i:12140191 original size:128 final size:127
Alignment explanation
Indices: 12139950--12140356 Score: 474
Period size: 128 Copynumber: 3.2 Consensus size: 127
12139940 ACCAAGGTGT
* * * * * * *
12139950 CGATGGTGCCCGAGACTCCAGCATGACCAAGGGCCTAGGTTGCCGAAGGTGTCCGAGGCTCTCGT
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTGACCGAGGCTCTCGC
** * * *
12140015 ACATCCAAGCACCAAGGTGCCAGTGGTGCTTGAAGCTCCCGTACGACCAAGGGCCTAGGTTGT
66 ACATCCAAGCACCAAGGTGCCA-TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * *
12140078 CGATGGTGCCTGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTGCCCGAGGCTCTAGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTGACCGAGGCTCTCGC
* * * ** * *
12140143 ACGTCCAAGCACTAAGGTGCCGATAGTGCCCGAGGCTCTTGCATGACCAAGGGCCTAGGTTAC
66 ACATCCAAGCACCAAGGTGCC-ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
** * * * *
12140206 CGATGGTGCCCGAGGCTCCTACACAACCAAGGGCCTAGGTTTCTGATTGT-ACTGAGGCTCTCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTGACCGAGGCTCTCGC
* * * *
12140270 AAATCCAAACACCAAGGTGCCAATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGTTTGC
66 ACATCCAAGCACCAAGGTGCC-ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* *
12140333 CGATGGTGTCTGAGGCTCCCGCAC
1 CGATGGTGCCCGAGGCTCCCGCAC
12140357 ATCGAAGGCA
Statistics
Matches: 232, Mismatches: 46, Indels: 3
0.83 0.16 0.01
Matches are distributed among these distances:
127 82 0.35
128 149 0.64
129 1 0.00
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (127 bp):
CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTGACCGAGGCTCTCGC
ACATCCAAGCACCAAGGTGCCATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
Found at i:12140263 original size:85 final size:84
Alignment explanation
Indices: 12140057--12140355 Score: 268
Period size: 85 Copynumber: 3.5 Consensus size: 84
12140047 AAGCTCCCGT
* * *
12140057 ACGACCAAGGGCCTAGGTTGTCGATGGTGCCTGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCT
1 ACGACCAAGGGCCTAGGTT-TCGATAGTGCCTGAGGCTCTCGCA-GACCAAGGGCCTAGGTTGCC
12140122 GATGGTGCCCGAGGCT-CTAGC
64 GATGGTGCCCGAGGCTCCTA-C
* ** * * *
12140143 ACGTCCAA--GCACTAAGGTGCCGATAGTGCCCGAGGCTCTTGCATGACCAAGGGCCTAGGTTAC
1 ACGACCAAGGGC-CT-AGGTTTCGATAGTGCCTGAGGCTCTCGCA-GACCAAGGGCCTAGGTTGC
12140206 CGATGGTGCCCGAGGCTCCTAC
63 CGATGGTGCCCGAGGCTCCTAC
* * * * *** *
12140228 ACAACCAAGGGCCTAGGTTTCTGATTGT-ACTGAGGCTCTCGCAAATCCAAACACCAAGG-TGCC
1 ACGACCAAGGGCCTAGGTTTC-GATAGTGCCTGAGGCTCTCGCAGA-CCAAGGGCCTAGGTTGCC
* *
12140291 AATGGTGCCCGAGGCTCCCAC
64 GATGGTGCCCGAGGCTCCTAC
* * *
12140312 ACGACCAAGGGCCTA-GTTTGCCGATGGTGTCTGAGGCTCCCGCA
1 ACGACCAAGGGCCTAGGTTT--CGATAGTGCCTGAGGCTCTCGCA
12140356 CATCGAAGGC
Statistics
Matches: 173, Mismatches: 30, Indels: 21
0.77 0.13 0.09
Matches are distributed among these distances:
83 4 0.02
84 44 0.25
85 102 0.59
86 21 0.12
87 2 0.01
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (84 bp):
ACGACCAAGGGCCTAGGTTTCGATAGTGCCTGAGGCTCTCGCAGACCAAGGGCCTAGGTTGCCGA
TGGTGCCCGAGGCTCCTAC
Found at i:12140391 original size:43 final size:43
Alignment explanation
Indices: 12140344--12140479 Score: 150
Period size: 43 Copynumber: 3.2 Consensus size: 43
12140334 GATGGTGTCT
* **
12140344 GAGGCTCCCGCACATCGAAGGCACCAAGGTACTGATGCTATTC
1 GAGGCTCCCGCACATCGAAGGCACCAAGGTGCTGATGCTGCTC
* * ** *
12140387 GAGGCTCCCACATATCCG-AGGCACCAAGGTGCCAATACTGCTC
1 GAGGCTCCCGCACAT-CGAAGGCACCAAGGTGCTGATGCTGCTC
* *
12140430 GAGGCTCCTGTACATC-AGAGGCACCAAGGTGCTGATGCTGCTC
1 GAGGCTCCCGCACATCGA-AGGCACCAAGGTGCTGATGCTGCTC
12140473 GAGGCTC
1 GAGGCTC
12140480 TCTCACCACT
Statistics
Matches: 75, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
42 1 0.01
43 72 0.96
44 2 0.03
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (43 bp):
GAGGCTCCCGCACATCGAAGGCACCAAGGTGCTGATGCTGCTC
Found at i:12144474 original size:29 final size:27
Alignment explanation
Indices: 12144456--12144525 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
12144446 ATATTAAGTC
12144456 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
12144483 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
12144511 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
12144526 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:12144519 original size:28 final size:28
Alignment explanation
Indices: 12144456--12144553 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
12144446 ATATTAAGTC
*
12144456 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
12144483 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
12144511 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
12144540 CGCACACTTAGTGC
1 CGCACACTTAGTGC
12144554 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:12164240 original size:42 final size:42
Alignment explanation
Indices: 12164182--12164495 Score: 229
Period size: 42 Copynumber: 7.4 Consensus size: 42
12164172 AAAGACCGAT
* * *
12164182 CGATGGTGACCGAGGCTCCCGCGCATCCAAGTACCAAGGTGC
1 CGATGGTGCCCGAGGCTCCCGCACATCCAAGGACCAAGGTGC
* * * * * * *
12164224 CGATGGTACCCGAGGCTCTCGAACAACCAAGGGCCTAAGTTGT
1 CGATGGTGCCCGAGGCTCCCGCACATCCAAGGACC-AAGGTGC
* * * * *
12164267 CGATGGTGTCCGAGGCTCCCTCA-AGACCAAGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACA-TCCAAGGACCAAGG-TGC
* ** * * *
12164310 CGATGGTG-CGGAGGCTTTCGCAAATGCAAGCACCAAGGTGC
1 CGATGGTGCCCGAGGCTCCCGCACATCCAAGGACCAAGGTGC
* **
12164351 CAATGGTGCCCGAGGCTCCCGCACATCCAATCACCAAGGTGC
1 CGATGGTGCCCGAGGCTCCCGCACATCCAAGGACCAAGGTGC
* * * * * *
12164393 CGGTGGTGCTCGAGGCTCCCGTACGA-CCAAGGGCCTAGTTTGC
1 CGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGACCAAG-GTGC
* * * *
12164436 CGATGGTGTCCAAGGCTCCCGTACATCGAAGGCACCAAGGTGC
1 CGATGGTGCCCGAGGCTCCCGCACATCCAAGG-ACCAAGGTGC
* *
12164479 CGATGCTGCTCGAGGCT
1 CGATGGTGCCCGAGGCT
12164496 TCTACACATC
Statistics
Matches: 208, Mismatches: 55, Indels: 17
0.74 0.20 0.06
Matches are distributed among these distances:
41 10 0.05
42 105 0.50
43 89 0.43
44 4 0.02
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.18
Consensus pattern (42 bp):
CGATGGTGCCCGAGGCTCCCGCACATCCAAGGACCAAGGTGC
Found at i:12164282 original size:43 final size:41
Alignment explanation
Indices: 12164221--12164325 Score: 113
Period size: 43 Copynumber: 2.5 Consensus size: 41
12164211 AGTACCAAGG
*
12164221 TGCCGATGGTACCCGAGGCT-CTCGAACAACCAAGGGCCTAAGT
1 TGCCGATGGT-GCCGAGGCTCCTC-AA-AACCAAGGGCCTAAGT
* * *
12164264 TGTCGATGGTGTCCGAGGCTCCCTCAAGACCAAGGGCCTAGGT
1 TGCCGATGGTG-CCGAGGCT-CCTCAAAACCAAGGGCCTAAGT
*
12164307 TGCCGATGGTGCGGAGGCT
1 TGCCGATGGTGCCGAGGCT
12164326 TTCGCAAATG
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
42 7 0.13
43 41 0.77
44 2 0.04
45 3 0.06
ACGTcount: A:0.20, C:0.28, G:0.33, T:0.19
Consensus pattern (41 bp):
TGCCGATGGTGCCGAGGCTCCTCAAAACCAAGGGCCTAAGT
Found at i:12164297 original size:85 final size:84
Alignment explanation
Indices: 12164182--12164456 Score: 213
Period size: 85 Copynumber: 3.2 Consensus size: 84
12164172 AAAGACCGAT
*
12164182 CGATGGTGACCGAGGCTCCCGC--GCATCCAAGTACCAAGGTGCCGATGGTACCCGAGGCTCTCG
1 CGATGGTGTCCGAGGCTCCCGCAAG-A-CCAAGTACCAAGGTGCCGATGGT-CCCGAGGCTCTCG
*
12164245 AACAACCAAGGGCCTAAGTTGT
63 AACAACCAAGGGCCTAAGTTGC
* ** * * * *
12164267 CGATGGTGTCCGAGGCTCCCTCAAGACCAAGGGCCTAGGTTGCCGATGGTGCGGAGGCTTTCGCA
1 CGATGGTGTCCGAGGCTCCCGCAAGACCAAGTACCAAGG-TGCCGATGGTCCCGAGGCTCTCG-A
** ** *
12164332 A-ATGCAAGCACC-AAGGTGC
64 ACAACCAAGGGCCTAAGTTGC
* * * * * *
12164351 CAATGGTGCCCGAGGCTCCCGCACA-TCCAA-TCACCAAGGTGCCGGTGGTGCTCGAGGCTCCCG
1 CGATGGTGTCCGAGGCTCCCGCA-AGACCAAGT-ACCAAGGTGCCGATGGT-CCCGAGGCTCTCG
* *
12164414 TACGACCAAGGGCCT-AGTTTGC
63 AACAACCAAGGGCCTAAG-TTGC
*
12164436 CGATGGTGTCCAAGGCTCCCG
1 CGATGGTGTCCGAGGCTCCCG
12164457 TACATCGAAG
Statistics
Matches: 143, Mismatches: 37, Indels: 20
0.71 0.19 0.10
Matches are distributed among these distances:
83 10 0.07
84 50 0.35
85 69 0.48
86 13 0.09
87 1 0.01
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.17
Consensus pattern (84 bp):
CGATGGTGTCCGAGGCTCCCGCAAGACCAAGTACCAAGGTGCCGATGGTCCCGAGGCTCTCGAAC
AACCAAGGGCCTAAGTTGC
Found at i:12166764 original size:38 final size:38
Alignment explanation
Indices: 12166722--12166814 Score: 134
Period size: 38 Copynumber: 2.4 Consensus size: 38
12166712 ACAGGCTATA
* *
12166722 TGCTGGAATTATATCTGGG-TTACATCCCGCAGGCTTCG
1 TGCTGGTATTATATCTGGGTTTA-ATCCCGCAGGCCTCG
*
12166760 TGCTGGTATTATATCAGGGTTTAATCCCGCAGGCCTCG
1 TGCTGGTATTATATCTGGGTTTAATCCCGCAGGCCTCG
*
12166798 TGCTGCTATTATATCTG
1 TGCTGGTATTATATCTG
12166815 AGCTTAAAGT
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
38 46 0.94
39 3 0.06
ACGTcount: A:0.18, C:0.23, G:0.25, T:0.34
Consensus pattern (38 bp):
TGCTGGTATTATATCTGGGTTTAATCCCGCAGGCCTCG
Found at i:12167745 original size:43 final size:43
Alignment explanation
Indices: 12167683--12167787 Score: 165
Period size: 43 Copynumber: 2.4 Consensus size: 43
12167673 TACACTGATA
* * *
12167683 CTGCTCGAGGCTCCCGCACATTCGAGGCACCAAGGTGCCGATG
1 CTGCTCGAGGCTCTCGCACATCCGAGGCACCAAGGTGCCAATG
* *
12167726 TTGCTCGAGGCTCTCGCACATCCGAGGCACCAAGGTTCCAATG
1 CTGCTCGAGGCTCTCGCACATCCGAGGCACCAAGGTGCCAATG
12167769 CTGCTCGAGGCTCTCGCAC
1 CTGCTCGAGGCTCTCGCAC
12167788 CACCGACGTT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.18, C:0.35, G:0.28, T:0.19
Consensus pattern (43 bp):
CTGCTCGAGGCTCTCGCACATCCGAGGCACCAAGGTGCCAATG
Found at i:12174395 original size:188 final size:188
Alignment explanation
Indices: 12174066--12174446 Score: 545
Period size: 188 Copynumber: 2.0 Consensus size: 188
12174056 ACTTAGTAGT
* * * *
12174066 TTTAACTGAAAATTTTTTCTATTGGCCCAAAAGAAATACAAGAAGCCGAATGAAATATGGCATGA
1 TTTAACTCAAAATTTTTTCTATTGGCCCAAAACAAATACAAGAAACCGAATGAAATATAGCATGA
* * * *
12174131 TGGCATGGCACGACACTATAGAAAATTGAACAAGTACCCTGACCACCAACAGTTGGGAGCTCATA
66 TGGCATGGCACGACACGACAGAAAATTGAACAAGTACCCAGACCACCAACAGTTGGGAGCTCACA
*
12174196 CCCGCACCACCACGGCCCCCGTTGTGCCATGTTTC-CTAAGG-GGCGGTACAGCCAAGTG
131 CCCGCACCACCAC-GCCCCCGTTGTGCCATGTTTCTC-AAGGCGGCGGCACAGCCAAGTG
12174254 TTTAACTCAGAAA-TTTTTCTATTGGCCCAAAACAAATACAAGAAACCGAAT-AAAGTATAGCAT
1 TTTAACTCA-AAATTTTTTCTATTGGCCCAAAACAAATACAAGAAACCGAATGAAA-TATAGCAT
* * * * * *
12174317 GATGGCATGGCACGACACGGCAGAAAATTGAACAATTGCTCAGACCACTAATAGTTGGGAGCTCA
64 GATGGCATGGCACGACACGACAGAAAATTGAACAAGTACCCAGACCACCAACAGTTGGGAGCTCA
* *
12174382 CACCCGTACCACCACGCCCCCGTTGTGCCATGTTTCTCAAGGCGGCGGCACAGTCAAGTG
129 CACCCGCACCACCACGCCCCCGTTGTGCCATGTTTCTCAAGGCGGCGGCACAGCCAAGTG
12174442 TTTAA
1 TTTAA
12174447 TTAACTCCTT
Statistics
Matches: 172, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
187 28 0.16
188 141 0.82
189 3 0.02
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.22
Consensus pattern (188 bp):
TTTAACTCAAAATTTTTTCTATTGGCCCAAAACAAATACAAGAAACCGAATGAAATATAGCATGA
TGGCATGGCACGACACGACAGAAAATTGAACAAGTACCCAGACCACCAACAGTTGGGAGCTCACA
CCCGCACCACCACGCCCCCGTTGTGCCATGTTTCTCAAGGCGGCGGCACAGCCAAGTG
Found at i:12183082 original size:59 final size:59
Alignment explanation
Indices: 12183010--12183125 Score: 214
Period size: 59 Copynumber: 2.0 Consensus size: 59
12183000 TACGACGTCC
*
12183010 GAAAGCCCCATATGAACCTTGGGAATAGTTAGGATACATATGTCATGACATAGGATTTT
1 GAAAGCCCCATATGAACCTTAGGAATAGTTAGGATACATATGTCATGACATAGGATTTT
*
12183069 GAAAGCCCCATATGAACCTTAGGAATAGTTAGGATACATATGTCGTGACATAGGATT
1 GAAAGCCCCATATGAACCTTAGGAATAGTTAGGATACATATGTCATGACATAGGATT
12183126 CCGATATATT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
59 55 1.00
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (59 bp):
GAAAGCCCCATATGAACCTTAGGAATAGTTAGGATACATATGTCATGACATAGGATTTT
Found at i:12190866 original size:26 final size:26
Alignment explanation
Indices: 12190829--12190912 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
12190819 TGATACAAAT
* *
12190829 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
12190855 TGATAATGGGTTTGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
12190881 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
12190907 TGATAA
1 TGATAA
12190913 GAATTTCATG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.32, C:0.05, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:12192113 original size:16 final size:15
Alignment explanation
Indices: 12192087--12192116 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
12192077 ACTAGATTGG
12192087 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
12192102 CAAAATGCCGAAAAG
1 CAAAA-GCCGAAAAG
12192117 TCGGTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.53, C:0.23, G:0.20, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:12192398 original size:28 final size:26
Alignment explanation
Indices: 12192367--12192428 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
12192357 TTACTATAAC
* *
12192367 ACCCCTATGTATGGAAAATTACTGTTAT
1 ACCCCTA-G-ATGCAAAATTACCGTTAT
*
12192395 ACCCCTAGGTGCAAAATTACCGTTAT
1 ACCCCTAGATGCAAAATTACCGTTAT
12192421 ACCCCTAG
1 ACCCCTAG
12192429 GGTTAATTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
26 23 0.74
27 1 0.03
28 7 0.23
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.29
Consensus pattern (26 bp):
ACCCCTAGATGCAAAATTACCGTTAT
Found at i:12192573 original size:27 final size:27
Alignment explanation
Indices: 12192532--12192674 Score: 205
Period size: 27 Copynumber: 5.3 Consensus size: 27
12192522 GAGGAAGCGT
*
12192532 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
*
12192559 TCTGGTGCCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
*
12192586 TCTGGTGGCTCTGCCACAAATATCTGG
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
12192613 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
12192640 TCTGGTAGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
12192668 TCTGGTG
1 TCTGGTG
12192675 ACTCCGTCAC
Statistics
Matches: 103, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
27 97 0.94
28 6 0.06
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.33
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:12192688 original size:27 final size:27
Alignment explanation
Indices: 12192532--12192698 Score: 160
Period size: 27 Copynumber: 6.2 Consensus size: 27
12192522 GAGGAAGCGT
* * *
12192532 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGACTCTGCCACAATTATCTGA
* *
12192559 TCTGGTGCCTCTGCCACAAATATCTGA
1 TCTGGTGACTCTGCCACAATTATCTGA
* * *
12192586 TCTGGTGGCTCTGCCACAAATATCTGG
1 TCTGGTGACTCTGCCACAATTATCTGA
* *
12192613 TCTGGTGGCTCTGCCAC-ATATATCTGT
1 TCTGGTGACTCTGCCACAAT-TATCTGA
*
12192640 TCTGGT-AGCTCTGCCACGATTATCTGTA
1 TCTGGTGA-CTCTGCCACAATTATCTG-A
* * *
12192668 TCTGGTGACTCCGTCAC-ATTATCTGT
1 TCTGGTGACTCTGCCACAATTATCTGA
12192694 TCTGG
1 TCTGG
12192699 CAGCCATGCT
Statistics
Matches: 124, Mismatches: 11, Indels: 11
0.85 0.08 0.08
Matches are distributed among these distances:
26 6 0.05
27 102 0.82
28 15 0.12
29 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.34
Consensus pattern (27 bp):
TCTGGTGACTCTGCCACAATTATCTGA
Found at i:12192691 original size:54 final size:53
Alignment explanation
Indices: 12192530--12192698 Score: 212
Period size: 54 Copynumber: 3.1 Consensus size: 53
12192520 TGGAGGAAGC
* * *
12192530 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGCCTCTGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGACTCTGCCAC-ATTATCT
* * *
12192584 GATCTGGTGGCTCTGCCACAAATATCTGGTCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGACTCTGCCACAT-TATCT
* * * * *
12192638 GTTCTGGTAGCTCTGCCACGATTATCTGTATCTGGTGACTCCGTCACATTATCT
1 GTTCTGGTGGCTCTGCCACAAATATCTG-ATCTGGTGACTCTGCCACATTATCT
12192692 GTTCTGG
1 GTTCTGG
12192699 CAGCCATGCT
Statistics
Matches: 100, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 83 0.83
55 16 0.16
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.34
Consensus pattern (53 bp):
GTTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGACTCTGCCACATTATCT
Found at i:12192691 original size:81 final size:81
Alignment explanation
Indices: 12192532--12192698 Score: 212
Period size: 81 Copynumber: 2.1 Consensus size: 81
12192522 GAGGAAGCGT
*
12192532 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGCCTCTGCCACAAATATCTGATCTGGTGGCTC
1 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGCCTCTGCCACAAATATCTGATCTGGTGACTC
*
12192597 TGCCACAAATATCTGG
66 CGCCACAAATATCTGG
* * * * *
12192613 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTAG-CTCTGCCACGATTATCTGTATCTGGTGAC
1 TCTGGTGGCTATGCCACAAATATCTGATCTGGT-GCCTCTGCCACAAATATCTG-ATCTGGTGAC
* * *
12192677 TCCGTCAC-ATTATCTGT
64 TCCGCCACAAATATCTGG
12192694 TCTGG
1 TCTGG
12192699 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
81 58 0.78
82 16 0.22
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.34
Consensus pattern (81 bp):
TCTGGTGGCTATGCCACAAATATCTGATCTGGTGCCTCTGCCACAAATATCTGATCTGGTGACTC
CGCCACAAATATCTGG
Found at i:12192784 original size:19 final size:21
Alignment explanation
Indices: 12192760--12192799 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
12192750 CTCCCCACAC
12192760 GGTGTAT-GGTTGG-TATGGG
1 GGTGTATAGGTTGGATATGGG
12192779 GGTGTATACGGTTGGATATGG
1 GGTGTATA-GGTTGGATATGG
12192800 TTGGGTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.39
21 6 0.33
22 5 0.28
ACGTcount: A:0.15, C:0.03, G:0.47, T:0.35
Consensus pattern (21 bp):
GGTGTATAGGTTGGATATGGG
Found at i:12196246 original size:18 final size:18
Alignment explanation
Indices: 12196223--12196258 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
12196213 TTTTTTGTGT
12196223 GCTTAATTAAATAAAATG
1 GCTTAATTAAATAAAATG
**
12196241 GCTTAATTGCATAAAATG
1 GCTTAATTAAATAAAATG
12196259 AAAACTTGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.33
Consensus pattern (18 bp):
GCTTAATTAAATAAAATG
Found at i:12197683 original size:12 final size:12
Alignment explanation
Indices: 12197666--12197690 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
12197656 ATGTAAGTGA
12197666 TCTTGATGATTT
1 TCTTGATGATTT
12197678 TCTTGATGATTT
1 TCTTGATGATTT
12197690 T
1 T
12197691 TACATTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:12198928 original size:55 final size:55
Alignment explanation
Indices: 12198826--12198929 Score: 138
Period size: 55 Copynumber: 1.9 Consensus size: 55
12198816 CTTGGGCAAT
* *
12198826 ACTGACTTATTAACACGGCCATGGCACACACCCGTGCTGCTTGCCCGTGGATGAC
1 ACTGACTTATTAACACGGCCATGGCACACACCCGTGCTGCCTACCCGTGGATGAC
* * * *
12198881 ACTGTCTTTTTAACACGGCCATGGCGCACGCCCGTG-TGGCCTACCCGTG
1 ACTGACTTATTAACACGGCCATGGCACACACCCGTGCT-GCCTACCCGTG
12198930 TACAACTTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 1 0.02
55 41 0.98
ACGTcount: A:0.18, C:0.34, G:0.25, T:0.23
Consensus pattern (55 bp):
ACTGACTTATTAACACGGCCATGGCACACACCCGTGCTGCCTACCCGTGGATGAC
Found at i:12201467 original size:47 final size:47
Alignment explanation
Indices: 12201388--12201708 Score: 264
Period size: 47 Copynumber: 6.8 Consensus size: 47
12201378 GGATGTTACA
12201388 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATC-CAG
1 ATGAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCACAG
* * * * **
12201436 ACGAGGGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAT-A-TT
1 ATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATC-GGCATCACAG
* *
12201482 ATGAGAGCCAGTGTAAGACCATGTATGGGACATGGCATCGGCA-CAGAG
1 ATGAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCACAG
* * * *
12201530 ATGAGTGCCAGAGTAAGACATGTCTGGGACATACATCGGCCTCAACAG
1 ATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATC-ACAG
* * * * * *
12201578 A-GATAGCCAGTGTAAAACGTGTCTCGGACACGTATCGGC-T-A-AG
1 ATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCACAG
* * * * * * *
12201621 A-GTTGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGCATAT
1 ATG-AGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCA-TCACAG
12201669 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 ATGAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
12201709 ACAATATATC
Statistics
Matches: 213, Mismatches: 44, Indels: 30
0.74 0.15 0.10
Matches are distributed among these distances:
43 4 0.02
44 28 0.13
46 28 0.13
47 79 0.37
48 54 0.25
49 15 0.07
50 5 0.02
ACGTcount: A:0.29, C:0.21, G:0.30, T:0.21
Consensus pattern (47 bp):
ATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCACAG
Found at i:12201549 original size:94 final size:93
Alignment explanation
Indices: 12201388--12201708 Score: 361
Period size: 94 Copynumber: 3.4 Consensus size: 93
12201378 GGATGTTACA
* * *
12201388 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATC-CAGACGAGGGCTAGTGTAA
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CAGAGATGAGTGCTAGTGTAA
12201452 GACATGTCTGGGACATGCATCAGCCATATT
65 GACATGTCTGGGACATGCATCAGCCATA-T
* * *
12201482 ATGAGAGCCAGTGTAAGACCATGTATGGGACATGGCATCGGCACAGAGATGAGTGCCAGAGTAAG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGAGTGCTAGTGTAAG
* *
12201547 ACATGTCTGGGACATACATCGGCC-TCA-
66 ACATGTCTGGGACATGCATCAGCCAT-AT
* * * * * * *
12201574 ACAGAGATAGCCAGTGTAA-AACGTGTCTCGGACA-CGTATCGGCTA-AGAG-T-TGTGCTAGTG
1 A-TGAG--AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACAGAGATGAGTGCTAGTG
12201634 TAAGACATGTCTGGGACATGCATCAGCACGCATAT
62 TAAGACATGTCTGGGACATGCATCAG--C-CATAT
12201669 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
12201709 ACAATATATC
Statistics
Matches: 188, Mismatches: 26, Indels: 26
0.78 0.11 0.11
Matches are distributed among these distances:
91 31 0.16
92 13 0.07
93 29 0.15
94 102 0.54
95 13 0.07
ACGTcount: A:0.29, C:0.21, G:0.30, T:0.21
Consensus pattern (93 bp):
ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGAGTGCTAGTGTAAG
ACATGTCTGGGACATGCATCAGCCATAT
Found at i:12208230 original size:12 final size:12
Alignment explanation
Indices: 12208213--12208237 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
12208203 ATGTAAGTGA
12208213 TCTTGATGATTT
1 TCTTGATGATTT
12208225 TCTTGATGATTT
1 TCTTGATGATTT
12208237 T
1 T
12208238 TACATTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:12209024 original size:47 final size:46
Alignment explanation
Indices: 12208956--12209265 Score: 236
Period size: 47 Copynumber: 6.6 Consensus size: 46
12208946 TTTGTGCACC
* * *
12208956 AGTGTAAGACATGTCTTGGACATGCTTCGGCCACATTATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCT
* * * *
12209002 AGTGTAAGATCATGTCTAGGACATGGCATCTA--CATCCA-GACGAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC-AGCCA--CATTATGAGAGCT
* * * * *
12209050 AGTGTAAAACATGTTTGGGACAAGCATCAGCCATATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCT
* * * * *
12209096 AGTGTAAGACTATGTCTGGGACATGGCATC-GGCATCCA-GACGAGGGTT
1 AGTGTAAGAC-ATGTCTGGGACAT-GCATCAGCCA--CATTATGAGAGCT
* * *
12209144 AGTGTAAGACATGTTTGGGACATGCATCAGCCATATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCT
** * *
12209190 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CACAGAGATGAGTGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCACA-TTATGAGAGCT
**
12209238 AAAGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
12209266 GGCCTCGACA
Statistics
Matches: 207, Mismatches: 40, Indels: 34
0.74 0.14 0.12
Matches are distributed among these distances:
45 3 0.01
46 53 0.26
47 87 0.42
48 61 0.29
49 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCT
Found at i:12209245 original size:94 final size:94
Alignment explanation
Indices: 12208956--12209403 Score: 416
Period size: 94 Copynumber: 4.8 Consensus size: 94
12208946 TTTGTGCACC
* * * * * *
12208956 AGTGTAAGACATGTCTT-GGACATGCTTCGGCCACATTATGAGAGCTAGTGTAAGATCATGTCTA
1 AGTGTAAGACATGT-TTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTCTG
12209020 GGACATGGCATCTA-CATCCAGACGAGGGCT
65 GGACATGGCATC-AGCATCCAGACGAGGGCT
* * *
12209050 AGTGTAAAACATGTTTGGGACAAGCATCAGCCATATTATGAGAGCCAGTGTAAGACTATGTCTGG
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTCTGG
* *
12209115 GACATGGCATCGGCATCCAGACGAGGGTT
66 GACATGGCATCAGCATCCAGACGAGGGCT
12209144 AGTGTAAGACATGTTTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTCTGG
* * * *
12209209 GACATGGCATCAGCA-CAGAGATGAGTGCC
66 GACATGGCATCAGCATC-CAGACGAGGGCT
** * * * * * *
12209238 AAAGTAAGACATGTCTGGGACATGCATCGGCC-TCGA-CA-GAGATAGCCAATGTAA-AACGTGT
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCAT--ATTATGAG--AGCCAGTGTAAGACCATGT
* * * * * * *
12209299 CTGGAACA-CGTATCGGC-T-AAGA-GTTGTGCT
62 CTGGGACATGGCATCAGCATCCAGACG-AGGGCT
* *
12209329 AGTGTAAGACATGTTTGGGACATGCATTAGCACGCATA-TATGAGAGCCAGTATAAGACCATGTC
1 AGTGTAAGACATGTTTGGGACATGCATCAG--C-CATATTATGAGAGCCAGTGTAAGACCATGTC
*
12209393 TAGGACATGGC
63 TGGGACATGGC
12209404 GTCGGTAATA
Statistics
Matches: 289, Mismatches: 49, Indels: 32
0.78 0.13 0.09
Matches are distributed among these distances:
90 1 0.00
91 32 0.11
92 9 0.03
93 27 0.09
94 208 0.72
95 12 0.04
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (94 bp):
AGTGTAAGACATGTTTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCAGCATCCAGACGAGGGCT
Found at i:12211182 original size:35 final size:34
Alignment explanation
Indices: 12211073--12211218 Score: 85
Period size: 35 Copynumber: 4.2 Consensus size: 34
12211063 AGGTAAGTAC
* * * *
12211073 ATGTAAGCTTATATTGAACTGGTACATTCAGCTGT
1 ATGTGAGCTTATATTGAA-TTGTACATTCGGCTAT
* * * * ** *
12211108 ATGTGAGGTTACATTGAATTTTAGCATTTGATTAC
1 ATGTGAGCTTATATTGAATTGTA-CATTCGGCTAT
* *
12211143 ATGTGAGCTTATATTGAACTTGTATATTCGGTTAT
1 ATGTGAGCTTATATTGAA-TTGTACATTCGGCTAT
** * * * *
12211178 ATGTGAAATTATCTTGAATGTGCATATTCGGCCAT
1 ATGTGAGCTTATATTGAAT-TGTACATTCGGCTAT
12211213 ATGTGA
1 ATGTGA
12211219 TGTTCTTTTG
Statistics
Matches: 84, Mismatches: 24, Indels: 6
0.74 0.21 0.05
Matches are distributed among these distances:
34 4 0.05
35 76 0.90
36 4 0.05
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (34 bp):
ATGTGAGCTTATATTGAATTGTACATTCGGCTAT
Found at i:12236069 original size:46 final size:47
Alignment explanation
Indices: 12235856--12236119 Score: 165
Period size: 46 Copynumber: 5.6 Consensus size: 47
12235846 TTTGTGTGCT
* * ** *
12235856 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCAC-ATTATGAGAGTC
1 AGTGTAAGACCATGTTTGGGACATGGCATC-GGCACGAAAATG-TAGTC
* * * * * *
12235902 AATGTAAGACCATGTCTGGGACATGGCATCGGCATTG-AGACGAAAG-C
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCA-CGAAAATG-TAGTC
* * * * * *
12235949 TAGTGTAAGA-AATGTTTGGGACAT-GCATCGACCTCG-AGATGCAAGGC
1 -AGTGTAAGACCATGTTTGGGACATGGCATCG-GCACGAAAATG-TAGTC
12235996 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGCTAC-AAAATGT-GTC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGC-ACGAAAATGTAGTC
* *
12236040 AGTGTAAGACCATGTTTGGGACATGGCATCGGCACGGATATGTGAGAGTC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCACGAAAATGT---AGTC
*
12236090 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTTTGGGACATGGCATC
12236120 TACTTGATGG
Statistics
Matches: 178, Mismatches: 24, Indels: 28
0.77 0.10 0.12
Matches are distributed among these distances:
44 11 0.06
45 17 0.10
46 68 0.38
47 32 0.18
48 18 0.10
50 32 0.18
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGGCACGAAAATGTAGTC
Found at i:12237478 original size:42 final size:43
Alignment explanation
Indices: 12237376--12237532 Score: 142
Period size: 42 Copynumber: 3.7 Consensus size: 43
12237366 TGAGATATCG
* * * * *
12237376 TGTAACACCGTGTCTGGGACATAGGCCTCGAT-TTGAGATTTACA
1 TGTAAGACCCTGTCTGGGACATCGGCATCGATACTGA-A-TTACA
* * *
12237420 TGTAAGACCATGTCTGGGACATCGGCATCG-TATCTG-ATTTCG
1 TGTAAGACCCTGTCTGGGACATCGGCATCGATA-CTGAATTACA
* **
12237462 TGTAAGACCCTATCTGGGACAGAGGCATCGATACTGAATTACA
1 TGTAAGACCCTGTCTGGGACATCGGCATCGATACTGAATTACA
*
12237505 TGTAAGACCAC-GTCTGGGACGTCGGCAT
1 TGTAAGACC-CTGTCTGGGACATCGGCAT
12237533 TGTACCCGTT
Statistics
Matches: 91, Mismatches: 17, Indels: 11
0.76 0.14 0.09
Matches are distributed among these distances:
42 32 0.35
43 30 0.33
44 27 0.30
45 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (43 bp):
TGTAAGACCCTGTCTGGGACATCGGCATCGATACTGAATTACA
Found at i:12237522 original size:85 final size:86
Alignment explanation
Indices: 12237373--12237532 Score: 225
Period size: 85 Copynumber: 1.9 Consensus size: 86
12237363 ATCTGAGATA
* * * * * *
12237373 TCGTGTAACACCGTGTCTGGGACATAGGCCTCGATTTGAGATTTACATGTAAGACCATGTCTGGG
1 TCGTGTAACACCCTATCTGGGACAGAGGCATCGATCTGAGATTTACATGTAAGACCACGTCTGGG
12237438 ACATCGGCATCGTATCTGATT
66 ACATCGGCATCGTATCTGATT
*
12237459 TCGTGTAAGACCCTATCTGGGACAGAGGCATCGATACTGA-A-TTACATGTAAGACCACGTCTGG
1 TCGTGTAACACCCTATCTGGGACAGAGGCATCGAT-CTGAGATTTACATGTAAGACCACGTCTGG
*
12237522 GACGTCGGCAT
65 GACATCGGCAT
12237533 TGTACCCGTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
85 31 0.48
86 31 0.48
87 3 0.05
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (86 bp):
TCGTGTAACACCCTATCTGGGACAGAGGCATCGATCTGAGATTTACATGTAAGACCACGTCTGGG
ACATCGGCATCGTATCTGATT
Found at i:12243594 original size:38 final size:38
Alignment explanation
Indices: 12243490--12243595 Score: 133
Period size: 38 Copynumber: 2.8 Consensus size: 38
12243480 GGCTTAAAGA
* * * *
12243490 CCCGCAGG-CTATATGCTGGAAATATATCCGGGTTAAAT
1 CCCGCAGGCCTA-GTGCTGGTATTATATCTGGGTTAAAT
* * *
12243528 CCCACAGGCTTCGTGCTGGTATTATATCTGGGTTAAAT
1 CCCGCAGGCCTAGTGCTGGTATTATATCTGGGTTAAAT
12243566 CCCGCAGGCCTAGTGCTGGTATTATATCTG
1 CCCGCAGGCCTAGTGCTGGTATTATATCTG
12243596 AGTTTAAAGT
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
38 56 0.98
39 1 0.02
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.30
Consensus pattern (38 bp):
CCCGCAGGCCTAGTGCTGGTATTATATCTGGGTTAAAT
Found at i:12249672 original size:18 final size:18
Alignment explanation
Indices: 12249646--12249681 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
12249636 GAGATGGTTG
*
12249646 GAGTTGATAAAAGACTAT
1 GAGTCGATAAAAGACTAT
*
12249664 GAGTCGATAATAGACTAT
1 GAGTCGATAAAAGACTAT
12249682 CACTCATGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.28
Consensus pattern (18 bp):
GAGTCGATAAAAGACTAT
Found at i:12252591 original size:46 final size:44
Alignment explanation
Indices: 12252444--12252611 Score: 183
Period size: 46 Copynumber: 3.6 Consensus size: 44
12252434 TTTGTGTGCT
* * *
12252444 AGTGTAAGACATGTCTGGAACATGCATCAGCCACATTATGAAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCA-GATG-AAGCC
* * * * *
12252490 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGC-CTCAGATGA-AGCC
*
12252538 AGTGTAAGACATGTTTGGGACATGCATCAGCCTCGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTC-AGATG-AAGCC
12252584 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
12252612 GGCTACAAAA
Statistics
Matches: 101, Mismatches: 15, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
45 1 0.01
46 50 0.50
47 28 0.28
48 21 0.21
49 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCAGATGAAGCC
Found at i:12255974 original size:44 final size:41
Alignment explanation
Indices: 12255926--12256064 Score: 136
Period size: 42 Copynumber: 3.2 Consensus size: 41
12255916 TGTAACATCG
* * *
12255926 TGTCTGGGACACAGGCCTCGATTTGAGATTTATGTGTAAGACCA
1 TGTCTGGGACACAGGCATCGATCT--GATTT-CGTGTAAGACCA
* *
12255970 TGTCTGGGACATAGGCATCGTATCTGATTTCGTGTAAGACCC
1 TGTCTGGGACACAGGCATCG-ATCTGATTTCGTGTAAGACCA
* *
12256012 TGTCTGGGACAGAGGCATCGATACTGAATTACAG-GTAAGACCA
1 TGTCTGGGACACAGGCATCGAT-CTG-ATTTC-GTGTAAGACCA
*
12256055 CGTCTGGGAC
1 TGTCTGGGAC
12256065 GTCGGCATTG
Statistics
Matches: 82, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
41 2 0.02
42 32 0.39
43 26 0.32
44 19 0.23
45 3 0.04
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (41 bp):
TGTCTGGGACACAGGCATCGATCTGATTTCGTGTAAGACCA
Found at i:12258487 original size:22 final size:22
Alignment explanation
Indices: 12258430--12258489 Score: 70
Period size: 22 Copynumber: 2.7 Consensus size: 22
12258420 ATTTTTATTT
* *
12258430 AAATTTAT-TATAACAATATTTA
1 AAATTTATAT-TAATAATATTAA
12258452 AAATTTATATTAATAATATTAA
1 AAATTTATATTAATAATATTAA
12258474 AATATTTA-ATTAATAA
1 AA-ATTTATATTAATAA
12258490 ACATTATCTA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
22 28 0.82
23 6 0.18
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (22 bp):
AAATTTATATTAATAATATTAA
Found at i:12264467 original size:5 final size:5
Alignment explanation
Indices: 12264457--12264490 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
12264447 GTAGAGTTGA
* *
12264457 AAAAT AAAAT AAAAT GAAAG AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
12264491 CATTTGAATG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:12264970 original size:40 final size:41
Alignment explanation
Indices: 12264921--12265004 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
12264911 TGAATCAAAG
12264921 TTAATTGGTTCATGTAA-CAAAAAGAAAAAAAAAGAGTTAA
1 TTAATTGGTTCATGTAACCAAAAAGAAAAAAAAAGAGTTAA
12264961 TTAATTGGTTCATGTAACCAAAAAGAAAAAAAAAGAGTTAA
1 TTAATTGGTTCATGTAACCAAAAAGAAAAAAAAAGAGTTAA
12265002 TTA
1 TTA
12265005 TTTCAAAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
40 17 0.40
41 26 0.60
ACGTcount: A:0.54, C:0.06, G:0.14, T:0.26
Consensus pattern (41 bp):
TTAATTGGTTCATGTAACCAAAAAGAAAAAAAAAGAGTTAA
Found at i:12270709 original size:46 final size:44
Alignment explanation
Indices: 12270650--12270764 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
12270640 ACAGGACAGA
* *
12270650 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
12270696 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
12270740 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
12270765 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:12270745 original size:44 final size:45
Alignment explanation
Indices: 12270650--12270783 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
12270640 ACAGGACAGA
* *
12270650 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
12270696 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
12270740 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
12270784 CAGGGTATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:12281030 original size:104 final size:104
Alignment explanation
Indices: 12280908--12281131 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
12280898 AATGGATATC
12280908 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
12280973 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACCAATAAACCGGGGAATCA
12281012 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
12281077 GGATCACGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
**
12281116 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
12281132 TTTATATACA
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:12281493 original size:29 final size:29
Alignment explanation
Indices: 12281460--12281523 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
12281450 TAATCCACCA
12281460 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
12281489 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
12281519 CCCAA
1 CCCAA
12281524 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:12281497 original size:30 final size:30
Alignment explanation
Indices: 12281467--12281523 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
12281457 CCACCCAACT
12281467 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
12281496 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
12281524 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:12288416 original size:26 final size:26
Alignment explanation
Indices: 12288380--12288431 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12288370 CACCACTGAA
* *
12288380 TCGGGGAATCATCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
12288406 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
12288432 CTTTTCATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.21, T:0.15
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:12288508 original size:70 final size:71
Alignment explanation
Indices: 12288392--12288542 Score: 241
Period size: 72 Copynumber: 2.1 Consensus size: 71
12288382 GGGGAATCAT
*
12288392 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTT-CATTTCAAATATACAATGG
1 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTTACATTTCAAAGATACAATGG
12288456 ATATCG
66 ATATCG
* ***
12288462 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTTACATTTCAAAGATACAATG
12288527 GATATCG
65 GATATCG
12288534 CACTTAGCA
1 CACTTAGCA
12288543 CCACCAATGA
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 16 0.22
71 28 0.38
72 30 0.41
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (71 bp):
CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTTACATTTCAAAGATACAATGG
ATATCG
Found at i:12288585 original size:104 final size:104
Alignment explanation
Indices: 12288461--12288684 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
12288451 AATGGATATC
12288461 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
12288526 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACCAATAAACCGGGGAATCA
12288565 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
12288630 GGATCACGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
**
12288669 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
12288685 TTTATATACA
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:12289046 original size:29 final size:29
Alignment explanation
Indices: 12289013--12289076 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
12289003 TAATCCACCA
12289013 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
12289042 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
12289072 CCCAA
1 CCCAA
12289077 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:12289050 original size:30 final size:30
Alignment explanation
Indices: 12289020--12289076 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
12289010 CCACCCAACT
12289020 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
12289049 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
12289077 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:12293706 original size:2 final size:2
Alignment explanation
Indices: 12293699--12293723 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
12293689 AAATGAATTG
12293699 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
12293724 AGTTAAAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:12301928 original size:36 final size:36
Alignment explanation
Indices: 12301888--12301962 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
12301878 AGCCAAAGTG
12301888 AAAACCCGTAAAGGGCGCTTTGAGACTTCCAAAAAA
1 AAAACCCGTAAAGGGCGCTTTGAGACTTCCAAAAAA
12301924 AAAACCCGTAAAGGGCGCTTTGAGACTTCCAAAAAA
1 AAAACCCGTAAAGGGCGCTTTGAGACTTCCAAAAAA
12301960 AAA
1 AAA
12301963 TAAAGGGGCC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.44, C:0.21, G:0.19, T:0.16
Consensus pattern (36 bp):
AAAACCCGTAAAGGGCGCTTTGAGACTTCCAAAAAA
Found at i:12302000 original size:55 final size:53
Alignment explanation
Indices: 12301924--12302077 Score: 184
Period size: 54 Copynumber: 2.8 Consensus size: 53
12301914 TTCCAAAAAA
*
12301924 AAAACCCGTAAAGGGCGCTTTGAGACTTCCAAAAAAAAAT-AAAGGGGCCAAAGTG
1 AAAACCCGCAAAGGGCGCTTTGAGAC-T-CAAAAAAAAATGAAA-GGGCCAAAGTG
* * *
12301979 AAAACCCGCAAAGGGCACTTTGATACTCAAATAAAAATGGAAAGGGCCAAAGTG
1 AAAACCCGCAAAGGGCGCTTTGAGACTCAAAAAAAAAT-GAAAGGGCCAAAGTG
* * *
12302033 AAAACCCGCAAAGGGTGCTTTGAGACCCAATAATAAAAAAGAAAG
1 AAAACCCGCAAAGGGCGCTTTGAGACTCAA-AA-AAAAATGAAAG
12302078 AAAAAGAGAA
Statistics
Matches: 85, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 10 0.12
54 38 0.45
55 32 0.38
56 5 0.06
ACGTcount: A:0.45, C:0.18, G:0.22, T:0.14
Consensus pattern (53 bp):
AAAACCCGCAAAGGGCGCTTTGAGACTCAAAAAAAAATGAAAGGGCCAAAGTG
Found at i:12303097 original size:64 final size:64
Alignment explanation
Indices: 12303014--12303139 Score: 216
Period size: 64 Copynumber: 2.0 Consensus size: 64
12303004 CTGCATGTAT
* *
12303014 CATTTAGTTAGGAGTATTTGATTCATTTTGATCATAGCACCCTAATTATTTGACATAAGCATCA
1 CATTTAGTTAGGAGCATTTGATTCATTTCGATCATAGCACCCTAATTATTTGACATAAGCATCA
* *
12303078 CATTTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGGCATAAGCAT
1 CATTTAGTTAGGAGCATTTGATTCATTTCGATCATAGCACCCTAATTATTTGACATAAGCAT
12303140 GTGCATATAA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 58 1.00
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (64 bp):
CATTTAGTTAGGAGCATTTGATTCATTTCGATCATAGCACCCTAATTATTTGACATAAGCATCA
Found at i:12303515 original size:180 final size:180
Alignment explanation
Indices: 12303204--12304362 Score: 1541
Period size: 180 Copynumber: 6.5 Consensus size: 180
12303194 ATTGGTAAAG
* * * ** *
12303204 ATTGAAGATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATCCTT-GTAGATGGTGAATCTTATCT
1 ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGAT-CTTCACAAATGGTGAATCTTATCT
* * * * * *
12303268 TCATGTATCAGCAATGGAGTATATTTTACCATCAAACCTTATCTCTCTGAGGTAGCAAGAAAGCA
65 CCATGTATCAGCAATGGAGCAGATTTTACCACCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCA
*
12303333 GGTTGAAGAATGAGTCTTATTTTCCTGAGGTAGCAAGGAAGCAGACTGAGA
130 GGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAGA
* * * *
12303384 ATTGAAGATTTTATCTCCCTGAAGTTACAGCAGAGCAGATCTTCGCAGATGGTGAATCTTATCTC
1 ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTCACAAATGGTGAATCTTATCTC
* * *
12303449 CATGTATCAGTAATGGAGCAGATTTTACCACCAAGCCTTGTCTCTCTGAGGTGGCAAGAGAGCAG
66 CATGTATCAGCAATGGAGCAGATTTTACCACCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAG
* *
12303514 GTTGAAGAATGAGTCTTATCTTCTTAAGGTAGCAAGGAAGCAGACTGAGA
131 GTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAGA
* *
12303564 ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATTTTCATAAATGGTGAATCTTATCTC
1 ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTCACAAATGGTGAATCTTATCTC
* *
12303629 CATGTATCAGCAATGGAGCAGATTTTACCACCAAGCCTTGTCTCTCTGAGGTGGCAAGAGAGCAG
66 CATGTATCAGCAATGGAGCAGATTTTACCACCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAG
* *
12303694 GTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCGAGGAAGCAGACTAAGA
131 GTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAGA
* * *
12303744 ATTGAAGATTTTATCTCCCTGAAGTTGCAGTGGAACAGATTTTCACAAATGGTGAATCTTATCTC
1 ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTCACAAATGGTGAATCTTATCTC
* * * * *
12303809 CATGTATCAGCAATGGAGCAGATTTTACCACTAAGCCTTGTCTCTCTGAGGTGGCAAGAGAACAA
66 CATGTATCAGCAATGGAGCAGATTTTACCACCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAG
* *
12303874 GTTGAATAATGAGTCTTATCTTCCTGAGGTAGTAAGGAAGCAGACTGAGA
131 GTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAGA
* * * * * *
12303924 ATTAAAAATTTTATCTCTCTGAAGTTGCAGCAGAGCAGATCTTCACAGATGGTGAATTTTATCTC
1 ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTCACAAATGGTGAATCTTATCTC
* * * * * *
12303989 CATGTATCAGCAATGGAGTAGATTTTACTACCAAGCCTTATCTCTCTGAAGTAGTAGGAGAGCAA
66 CATGTATCAGCAATGGAGCAGATTTTACCACCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAG
12304054 GTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAGA
131 GTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAGA
* * * * *
12304104 ATTGAAGATTTTATCTCCCTGAAGTCGTAGAGGAGTAGATCTTCACAAATGGTGAATCTTATATC
1 ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTCACAAATGGTGAATCTTATCTC
** * * * *
12304169 CATGTATTGGCAATGGAGCAGATTTTACCTCCAA-CCTCATCTCTCTGAGGTAGTAAGGGAGCAG
66 CATGTATCAGCAATGGAGCAGATTTTACCACCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAG
* * *
12304233 GTTGAAGAATGAG-----TCTTCCTGAAGTAGCAAGGAAGTAGACTGAGG
131 GTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAGA
* * * * * * * * * * *
12304278 GTTGAGGATCTTATCTCCCCGAAATGGCAGTGGAGC--ATATTGA-AAAT-G-AAATTTTATCTC
1 ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTCACAAATGGTGAATCTTATCTC
*
12304338 CATGTATCGGCAATGGAGCAGATTT
66 CATGTATCAGCAATGGAGCAGATTT
12304363 AATCTCATCT
Statistics
Matches: 880, Mismatches: 98, Indels: 13
0.89 0.10 0.01
Matches are distributed among these distances:
169 33 0.04
170 1 0.00
171 4 0.00
172 5 0.01
174 56 0.06
179 41 0.05
180 740 0.84
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (180 bp):
ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTCACAAATGGTGAATCTTATCTC
CATGTATCAGCAATGGAGCAGATTTTACCACCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAG
GTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAGA
Found at i:12310927 original size:38 final size:38
Alignment explanation
Indices: 12310874--12310966 Score: 168
Period size: 38 Copynumber: 2.4 Consensus size: 38
12310864 TTATACCTTA
12310874 TATATATATACTTTATTTTATTTATTTACTTAACATATAT
1 TATA-ATATA-TTTATTTTATTTATTTACTTAACATATAT
12310914 TATAATATATTTATTTTATTTATTTACTTAACATATAT
1 TATAATATATTTATTTTATTTATTTACTTAACATATAT
12310952 TATAATATATTTATT
1 TATAATATATTTATT
12310967 CTAAATATCT
Statistics
Matches: 53, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
38 44 0.83
39 5 0.09
40 4 0.08
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (38 bp):
TATAATATATTTATTTTATTTATTTACTTAACATATAT
Found at i:12312161 original size:14 final size:14
Alignment explanation
Indices: 12312142--12312190 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
12312132 ATTATATGTT
12312142 AATATTTAATAATA
1 AATATTTAATAATA
*
12312156 AATATTTAGTAATA
1 AATATTTAATAATA
*
12312170 AATATTTTATAGTATA
1 AATATTTAATA--ATA
12312186 AATAT
1 AATAT
12312191 GAATATTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
14 22 0.73
16 8 0.27
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (14 bp):
AATATTTAATAATA
Found at i:12312221 original size:33 final size:35
Alignment explanation
Indices: 12312156--12312221 Score: 93
Period size: 33 Copynumber: 1.9 Consensus size: 35
12312146 TTTAATAATA
12312156 AATATTTAGTAATAAATATTTTATAGTATAAATATG
1 AATATTTAG-AATAAATATTTTATAGTATAAATATG
12312192 AATATTTA-AATAAA-ATTATT-TAGTATAAAT
1 AATATTTAGAATAAATATT-TTATAGTATAAAT
12312222 TTTAATTAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
33 13 0.45
34 8 0.28
36 8 0.28
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (35 bp):
AATATTTAGAATAAATATTTTATAGTATAAATATG
Found at i:12313823 original size:14 final size:14
Alignment explanation
Indices: 12313804--12313833 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
12313794 AACACTTCAT
12313804 TTGAACATCTTAAC
1 TTGAACATCTTAAC
*
12313818 TTGAACTTCTTAAC
1 TTGAACATCTTAAC
12313832 TT
1 TT
12313834 ACATAATGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.43
Consensus pattern (14 bp):
TTGAACATCTTAAC
Found at i:12315126 original size:12 final size:11
Alignment explanation
Indices: 12315102--12315131 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
12315092 TTGGGAGACC
12315102 ATATATAAGAT
1 ATATATAAGAT
12315113 ATATATATAGAT
1 ATATATA-AGAT
12315125 ATATATA
1 ATATATA
12315132 GGTGAAAGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (11 bp):
ATATATAAGAT
Found at i:12316271 original size:94 final size:94
Alignment explanation
Indices: 12316105--12316276 Score: 211
Period size: 94 Copynumber: 1.8 Consensus size: 94
12316095 AGTCTGCCAG
* * * ** **
12316105 GACATTAAACATTGGGTTACATGTGTAAGACATTAGCTCGACTATGGCGACATGGGTAGTCCATT
1 GACATTAAACATTGGGTTACATATGTAAAACATTAGCTCGACTATGGCAACATAAGTAGTCCACC
* *
12316170 GGGACAGTAAACACGGGATAATCCATCAA
66 AGAACAGTAAACACGGGATAATCCATCAA
* ** *
12316199 GACATTAAACA-TGGGATTACATATGTAAAACCTTAGCTCGGTTATGGCAATATAAGTAGTCCAC
1 GACATTAAACATTGGG-TTACATATGTAAAACATTAGCTCGACTATGGCAACATAAGTAGTCCAC
12316263 CAGAACAGTAAACA
65 CAGAACAGTAAACA
12316277 TGGGGTAGTC
Statistics
Matches: 64, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
93 4 0.06
94 60 0.94
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (94 bp):
GACATTAAACATTGGGTTACATATGTAAAACATTAGCTCGACTATGGCAACATAAGTAGTCCACC
AGAACAGTAAACACGGGATAATCCATCAA
Found at i:12318752 original size:37 final size:37
Alignment explanation
Indices: 12318702--12318777 Score: 125
Period size: 37 Copynumber: 2.1 Consensus size: 37
12318692 CTTTAGCTCA
* *
12318702 GACAAAATCTCCACATGAAGTTATCGGGTCTTACCCG
1 GACAAAATCTCCACACGAAGTCATCGGGTCTTACCCG
*
12318739 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGAAGTCATCGGGTCTTACCCG
12318776 GA
1 GA
12318778 ATATATTTCC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (37 bp):
GACAAAATCTCCACACGAAGTCATCGGGTCTTACCCG
Found at i:12319048 original size:47 final size:47
Alignment explanation
Indices: 12318986--12319421 Score: 620
Period size: 47 Copynumber: 9.1 Consensus size: 47
12318976 ACACGTTTCG
* * * **
12318986 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
12319033 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
12319080 CATTGGTCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
12319127 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
12319174 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C----ACATACGCATGTTCACATTCATCA
*
12319227 CATTGGCCATTCGGCCTTATCACGCATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
12319274 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
12319321 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
12319372 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
12319419 CAT
1 CAT
12319422 AAAATCCTAA
Statistics
Matches: 353, Mismatches: 26, Indels: 20
0.88 0.07 0.05
Matches are distributed among these distances:
47 265 0.75
49 1 0.00
51 45 0.13
53 42 0.12
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:12319348 original size:194 final size:195
Alignment explanation
Indices: 12318986--12319399 Score: 653
Period size: 194 Copynumber: 2.1 Consensus size: 195
12318976 ACACGTTTCG
* *
12318986 CATTAGCCATTCGGCCTTA-C-CAC--ATATAT-T-CATGTTCACATTCATCACATTGGCCATTC
1 CATTGGCCATTCGGCCTTATCACACATATATATATACAGGTTCACATTCATCACATTGGCCATTC
* * * *
12319045 GGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGTCATTCGGCCTTATCACACATACG
66 GGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
*
12319110 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT-GTTCACATTCATCA
131 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGGTTCACATTCATCA
*
12319174 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCACATTGGCCATTC
1 CATTGGCCATTCGGCCTTATCACACATATATATATACAGGTTCACATTCATCACATTGGCCATTC
*
12319239 GGCCTTATCACGCATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
66 GGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
* *
12319304 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCA
131 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACAT---GGTTCACATTCA
12319369 TCA
193 TCA
12319372 CATTGGCCATTCGGCCTTATCACACATA
1 CATTGGCCATTCGGCCTTATCACACATA
12319400 CGCATGTTCA
Statistics
Matches: 204, Mismatches: 12, Indels: 10
0.90 0.05 0.04
Matches are distributed among these distances:
188 18 0.09
189 1 0.00
190 2 0.01
192 6 0.03
193 1 0.00
194 135 0.66
198 41 0.20
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.32
Consensus pattern (195 bp):
CATTGGCCATTCGGCCTTATCACACATATATATATACAGGTTCACATTCATCACATTGGCCATTC
GGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGGTTCACATTCATCA
Found at i:12319461 original size:147 final size:145
Alignment explanation
Indices: 12318986--12319421 Score: 709
Period size: 147 Copynumber: 3.0 Consensus size: 145
12318976 ACACGTTTCG
* * * **
12318986 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* * * *
12319051 AT--CTC--ATATATGCATGTTCACATTCATCACATTGGTCATTCGGCCTTATCACACATACGCA
66 ATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCA
12319112 TGTTCACATTCATCA
131 TGTTCACATTCATCA
12319127 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* *
12319192 ATCACGCATATATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATACG
66 ATCA--CACATATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
12319257 CATGTTCACATTCATCA
129 CATGTTCACATTCATCA
12319274 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
12319339 ATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCA
66 ATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCA
*
12319404 TGTTCACATCCATCA
131 TGTTCACATTCATCA
12319419 CAT
1 CAT
12319422 AAAATCCTAA
Statistics
Matches: 274, Mismatches: 15, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
141 62 0.23
145 76 0.28
147 136 0.50
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (145 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCA
TGTTCACATTCATCA
Found at i:12321492 original size:85 final size:85
Alignment explanation
Indices: 12321363--12321541 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
12321353 TATTTTATTG
*
12321363 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
12321428 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
12321448 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
12321513 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
12321533 CCCATGCTC
1 CCCATGCTC
12321542 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:12327975 original size:26 final size:26
Alignment explanation
Indices: 12327946--12328029 Score: 86
Period size: 26 Copynumber: 3.3 Consensus size: 26
12327936 TAAACAAGAA
12327946 TTAAAAAATGAATGTGAAATGGATAT
1 TTAAAAAATGAATGTGAAATGGATAT
* **
12327972 TTAAAAAAAT-AATG-AAAACAAGA-A-
1 TT-AAAAAATGAATGTGAAA-TGGATAT
*
12327996 TTAAAAAATGAATGTGAAATGGATCT
1 TTAAAAAATGAATGTGAAATGGATAT
12328022 TTAAAAAA
1 TTAAAAAA
12328030 AACTCAATTA
Statistics
Matches: 45, Mismatches: 7, Indels: 12
0.70 0.11 0.19
Matches are distributed among these distances:
23 7 0.16
24 8 0.18
25 7 0.16
26 16 0.36
27 7 0.16
ACGTcount: A:0.57, C:0.02, G:0.14, T:0.26
Consensus pattern (26 bp):
TTAAAAAATGAATGTGAAATGGATAT
Found at i:12328009 original size:24 final size:25
Alignment explanation
Indices: 12327937--12328010 Score: 73
Period size: 24 Copynumber: 3.0 Consensus size: 25
12327927 AAAAAAAATT
*
12327937 AAACAAGAATTAAAAAATGAATGTG
1 AAACAAGAATTAAAAAATGAATGTA
**
12327962 AAA-TGGATATTTAAAAAAAT-AATG-A
1 AAACAAGA-A-TT-AAAAAATGAATGTA
12327987 AAACAAGAATTAAAAAATGAATGT
1 AAACAAGAATTAAAAAATGAATGT
12328011 GAAATGGATC
Statistics
Matches: 38, Mismatches: 5, Indels: 12
0.69 0.09 0.22
Matches are distributed among these distances:
23 7 0.18
24 8 0.21
25 8 0.21
26 8 0.21
27 7 0.18
ACGTcount: A:0.61, C:0.03, G:0.14, T:0.23
Consensus pattern (25 bp):
AAACAAGAATTAAAAAATGAATGTA
Found at i:12336896 original size:22 final size:23
Alignment explanation
Indices: 12336871--12336916 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
12336861 CAACCAAATC
12336871 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
12336893 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
12336916 A
1 A
12336917 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:12336922 original size:23 final size:23
Alignment explanation
Indices: 12336878--12336922 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
12336868 ATCAATTCAA
*
12336878 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
12336901 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
12336923 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:12338570 original size:18 final size:17
Alignment explanation
Indices: 12338537--12338575 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
12338527 TTGTATAAAT
12338537 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
12338555 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
12338572 TGTG
1 TGTG
12338576 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:12338826 original size:18 final size:18
Alignment explanation
Indices: 12338803--12338857 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
12338793 TGTTATTGAT
12338803 CAGTGGTAGCTTCGGCTA
1 CAGTGGTAGCTTCGGCTA
** *
12338821 CAGTGGTA--TTCTACATT
1 CAGTGGTAGCTTCGGC-TA
12338838 CAGTGGTAGCTTCGGCTA
1 CAGTGGTAGCTTCGGCTA
12338856 CA
1 CA
12338858 TATCAGTGTT
Statistics
Matches: 28, Mismatches: 6, Indels: 6
0.70 0.15 0.15
Matches are distributed among these distances:
16 4 0.14
17 9 0.32
18 11 0.39
19 4 0.14
ACGTcount: A:0.20, C:0.22, G:0.27, T:0.31
Consensus pattern (18 bp):
CAGTGGTAGCTTCGGCTA
Found at i:12345943 original size:18 final size:17
Alignment explanation
Indices: 12345910--12345948 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
12345900 TTGTATAAAT
12345910 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
12345928 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
12345945 TGTG
1 TGTG
12345949 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:12346201 original size:23 final size:23
Alignment explanation
Indices: 12346174--12346226 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
12346164 AGTGTTATTG
*
12346174 ATCAGTGGTAGCTTCGGCTACGT
1 ATCAGTGGTAGCTTCGGCTACAT
*
12346197 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
12346220 ATCAGTG
1 ATCAGTG
12346227 TTGCACTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.19, C:0.21, G:0.28, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:12352065 original size:11 final size:11
Alignment explanation
Indices: 12352049--12352073 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
12352039 TTATATATAC
12352049 TAATAAAATAA
1 TAATAAAATAA
12352060 TAATAAAATAA
1 TAATAAAATAA
12352071 TAA
1 TAA
12352074 AATATCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:12352379 original size:30 final size:29
Alignment explanation
Indices: 12352345--12352412 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 29
12352335 CACCCTTAAA
*
12352345 ATATTTTCACTATT-AGCCCTTCAAATTTTT
1 ATATTTACACT-TTAAGCCC-TCAAATTTTT
* *
12352375 ATATTTACACTTTAATCCCTCAAATTTTG
1 ATATTTACACTTTAAGCCCTCAAATTTTT
12352404 AGTATTTAC
1 A-TATTTAC
12352413 TTTTGAGCCC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 12 0.36
30 21 0.64
ACGTcount: A:0.29, C:0.19, G:0.04, T:0.47
Consensus pattern (29 bp):
ATATTTACACTTTAAGCCCTCAAATTTTT
Found at i:12353359 original size:14 final size:14
Alignment explanation
Indices: 12353340--12353366 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
12353330 GAAAAGGCTG
12353340 AAAAGCTTTTACAA
1 AAAAGCTTTTACAA
12353354 AAAAGCTTTTACA
1 AAAAGCTTTTACA
12353367 GGTAAACAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.15, G:0.07, T:0.30
Consensus pattern (14 bp):
AAAAGCTTTTACAA
Found at i:12354194 original size:21 final size:21
Alignment explanation
Indices: 12354170--12354215 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
12354160 AAAAGAAGTT
*
12354170 AAATAAAAAAATAAATTAATA
1 AAATAAAAAAATAAATTAAAA
* * *
12354191 AAATTAAATAATTAATTAAAA
1 AAATAAAAAAATAAATTAAAA
12354212 AAAT
1 AAAT
12354216 CACTCGCCAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (21 bp):
AAATAAAAAAATAAATTAAAA
Found at i:12357971 original size:39 final size:39
Alignment explanation
Indices: 12357913--12358007 Score: 136
Period size: 39 Copynumber: 2.4 Consensus size: 39
12357903 TTTTAAGCAT
* * *
12357913 ATATATCATATTACACATATAATCACGTAACATTCAAGC
1 ATATATCATAATACTCATATAATCACATAACATTCAAGC
* *
12357952 ATATATCATAATACTCATATAATCACATAACGTTTAAGC
1 ATATATCATAATACTCATATAATCACATAACATTCAAGC
*
12357991 ATATATCACAATACTCA
1 ATATATCATAATACTCA
12358008 AAATCATGTT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 50 1.00
ACGTcount: A:0.44, C:0.20, G:0.04, T:0.32
Consensus pattern (39 bp):
ATATATCATAATACTCATATAATCACATAACATTCAAGC
Done.