Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 42 of 250
Found at i:12825902 original size:51 final size:51
Alignment explanation
Indices: 12825798--12825984 Score: 135
Period size: 51 Copynumber: 3.7 Consensus size: 51
12825788 CTACCTTCTT
* * * * *
12825798 CACAAAGTGGCCTTCACATAGTACCACACTTGTGATCAAAACCATCTCTTA
1 CACATAGTGGCCTACACTTAGTACCACACATGTGATCAAAACCATCTCATA
* * * *
12825849 CACATAGTGGCCTACACTTAGTACCACACATGTGATCGAAGCTAT-TGGATA
1 CACATAGTGGCCTACACTTAGTACCACACATGTGATCAAAACCATCT-CATA
* * * * * ** **
12825900 CACATAGTAGCCTGCACTTACTACTACACATGCGA-CCTAACCATCTGGTA
1 CACATAGTGGCCTACACTTAGTACCACACATGTGATCAAAACCATCTCATA
* * * * * *
12825950 CACGTAGTAGCTTGCACTTAGTACTACACACGTGA
1 CACATAGTGGCCTACACTTAGTACCACACATGTGA
12825985 CCTAAAATCA
Statistics
Matches: 110, Mismatches: 24, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
50 39 0.35
51 71 0.65
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (51 bp):
CACATAGTGGCCTACACTTAGTACCACACATGTGATCAAAACCATCTCATA
Found at i:12831652 original size:30 final size:30
Alignment explanation
Indices: 12831626--12831684 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
12831616 CATTTTCTTT
12831626 ATTCGATAGCCAAGGCTATCCCTTTTCATA
1 ATTCGATAGCCAAGGCTATCCCTTTTCATA
* * *
12831656 ATTCGATAGTCGATGCTATCCCTTTTCAT
1 ATTCGATAGCCAAGGCTATCCCTTTTCAT
12831685 GATTTGATGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (30 bp):
ATTCGATAGCCAAGGCTATCCCTTTTCATA
Found at i:12831709 original size:30 final size:30
Alignment explanation
Indices: 12831673--12831773 Score: 125
Period size: 30 Copynumber: 3.4 Consensus size: 30
12831663 AGTCGATGCT
12831673 ATCCCTTTTCATGATTTGATGGTCGTAACC
1 ATCCCTTTTCATGATTTGATGGTCGTAACC
* * *
12831703 ACCCCTTTTCATTG-TTTGGTGGTCGTTACC
1 ATCCCTTTTCA-TGATTTGATGGTCGTAACC
* * *
12831733 ATCCCTTTTCATTA-TTGATGGTTGTCACC
1 ATCCCTTTTCATGATTTGATGGTCGTAACC
12831762 ATCCCTTTTCAT
1 ATCCCTTTTCAT
12831774 AACCAATAGT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
29 25 0.41
30 34 0.56
31 2 0.03
ACGTcount: A:0.16, C:0.26, G:0.15, T:0.44
Consensus pattern (30 bp):
ATCCCTTTTCATGATTTGATGGTCGTAACC
Found at i:12833984 original size:17 final size:18
Alignment explanation
Indices: 12833950--12833987 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
12833940 GATGGTCCGA
*
12833950 AATGGGCCATATGGGCCC
1 AATGGGCCATACGGGCCC
12833968 AATGGGCC-TACGGGCCC
1 AATGGGCCATACGGGCCC
12833985 AAT
1 AAT
12833988 TGGATAAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.24, C:0.29, G:0.32, T:0.16
Consensus pattern (18 bp):
AATGGGCCATACGGGCCC
Found at i:12834233 original size:27 final size:27
Alignment explanation
Indices: 12834203--12834450 Score: 247
Period size: 27 Copynumber: 9.2 Consensus size: 27
12834193 AAAGTACTCC
*
12834203 CGATTTACTGAATTACCATTTTACCCT
1 CGATTTACTGAATTACCGTTTTACCCT
*
12834230 CGATTTA-TAGAATTACCGTTTTATCCT
1 CGATTTACT-GAATTACCGTTTTACCCT
* *
12834257 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACTGAATTACCGTTTTACCCT
*
12834284 C-AGTTTA-TAGAATTACTGTTTTACCCT
1 CGA-TTTACT-GAATTACCGTTTTACCCT
12834311 CGATTTA-TAGAATTACCGTTTTACCCT
1 CGATTTACT-GAATTACCGTTTTACCCT
* *
12834338 CGATTT-GTAAAATTACCGTTTTACCCT
1 CGATTTACT-GAATTACCGTTTTACCCT
* * * *
12834365 TGATTTACAGAATTACTGGTTTACCCT
1 CGATTTACTGAATTACCGTTTTACCCT
** * *
12834392 C-AGTTTACAAAATTATCATTTTACCCT
1 CGA-TTTACTGAATTACCGTTTTACCCT
**
12834419 CGATTTACAAAATTACCGTTTTACCCT
1 CGATTTACTGAATTACCGTTTTACCCT
12834446 CGATT
1 CGATT
12834451 GTGAAATTAC
Statistics
Matches: 188, Mismatches: 24, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
26 3 0.02
27 183 0.97
28 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (27 bp):
CGATTTACTGAATTACCGTTTTACCCT
Found at i:12834244 original size:54 final size:55
Alignment explanation
Indices: 12834197--12834450 Score: 272
Period size: 54 Copynumber: 4.7 Consensus size: 55
12834187 ATTACCAAAG
*
12834197 TACTCC-CGATTTACTGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTT
1 TACTCCTCGATTTACTGAATTACCATTTTACCCTCGATTTATAAAATTACCGTTT
* * *
12834251 TA-TCCTCGATTTACAGAATTACCATTTTACCCTC-AGTTTATAGAATTACTGTTT
1 TACTCCTCGATTTACTGAATTACCATTTTACCCTCGA-TTTATAAAATTACCGTTT
* *
12834305 TAC-CCTCGATTTA-TAGAATTACCGTTTTACCCTCGATTTGTAAAATTACCGTTT
1 TACTCCTCGATTTACT-GAATTACCATTTTACCCTCGATTTATAAAATTACCGTTT
* * *** * * *
12834359 TAC-CCTTGATTTACAGAATTACTGGTTTACCCTC-AGTTTACAAAATTATCATTT
1 TACTCCTCGATTTACTGAATTACCATTTTACCCTCGA-TTTATAAAATTACCGTTT
** *
12834413 TAC-CCTCGATTTACAAAATTACCGTTTTACCCTCGATT
1 TACTCCTCGATTTACTGAATTACCATTTTACCCTCGATT
12834451 GTGAAATTAC
Statistics
Matches: 173, Mismatches: 19, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
53 5 0.03
54 166 0.96
55 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.09, T:0.41
Consensus pattern (55 bp):
TACTCCTCGATTTACTGAATTACCATTTTACCCTCGATTTATAAAATTACCGTTT
Found at i:12834297 original size:81 final size:82
Alignment explanation
Indices: 12834204--12834450 Score: 322
Period size: 81 Copynumber: 3.0 Consensus size: 82
12834194 AAGTACTCCC
* ** * *
12834204 GATTTACTGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTATCCTCGATTTACAGAA
1 GATTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAA
*
12834269 TTACCATTTTACCCTCA
66 TTACCGTTTTACCCTCA
* **
12834286 G-TTTATAGAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTGTAAAA
1 GATTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAA
*
12834350 TTACCGTTTTACCCT-T
66 TTACCGTTTTACCCTCA
* * * * *
12834366 GATTTACAGAATTACTGGTTTACCCTC-AGTTTACAAAATTATCATTTTACCCTCGATTTACAAA
1 GATTTACAGAATTACTGTTTTACCCTCGA-TTTATAGAATTACCGTTTTACCCTCGATTTACAAA
12834430 ATTACCGTTTTACCCTC-
65 ATTACCGTTTTACCCTCA
12834447 GATT
1 GATT
12834451 GTGAAATTAC
Statistics
Matches: 144, Mismatches: 18, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
80 2 0.01
81 141 0.98
82 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.41
Consensus pattern (82 bp):
GATTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAA
TTACCGTTTTACCCTCA
Found at i:12834485 original size:27 final size:27
Alignment explanation
Indices: 12834455--12834595 Score: 165
Period size: 27 Copynumber: 5.2 Consensus size: 27
12834445 TCGATTGTGA
12834455 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
** *
12834482 AATTTTTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
** *
12834509 AATTACTGAAATACCGTTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
12834536 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
12834563 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
12834590 AATTAC
1 AATTAC
12834596 CATTTTGCCC
Statistics
Matches: 97, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 97 1.00
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:12834833 original size:27 final size:26
Alignment explanation
Indices: 12834795--12834877 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
12834785 CGGAGGAAGC
12834795 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
12834822 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * * * *
12834848 GTATTTGGTGACTCTGTCACAATATTT
1 GT-TCTGGTGGCTATGCCACAATATCT
12834875 GTT
1 GTT
12834878 GACCGATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 10 0.20
27 40 0.80
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.39
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:12834997 original size:22 final size:22
Alignment explanation
Indices: 12834965--12835023 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
12834955 CCCGTTATTA
*
12834965 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
12834987 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
12835009 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
12835024 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:12835413 original size:6 final size:6
Alignment explanation
Indices: 12835402--12835572 Score: 154
Period size: 6 Copynumber: 28.3 Consensus size: 6
12835392 CTGTCACCTA
* *
12835402 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
* * * * *
12835450 ATTTTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG -TTATTA
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATT-CTG
12835499 ATAT-TG ATTCTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 AT-TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * **
12835547 ATTCTC ATTTTG ATTCCA ATTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG AT
12835573 AATGTTTCTT
Statistics
Matches: 133, Mismatches: 21, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
5 8 0.06
6 117 0.88
7 6 0.05
8 2 0.02
ACGTcount: A:0.20, C:0.16, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:12835490 original size:73 final size:72
Alignment explanation
Indices: 12835377--12835540 Score: 224
Period size: 73 Copynumber: 2.2 Consensus size: 72
12835367 TTGCATTCAT
* *
12835377 ATTCTGATTTTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGT-TACTAATACTGATT
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTG-TTAT-TATACTAATACTGATT
12835441 CTGATTCTG
64 CTGATTCTG
* * * *
12835450 ATTTTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGTTATTAATATTGATTCTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGTTATT-ATACTAATACTGATTC
12835515 TGATTCTG
65 TGATTCTG
12835523 ATTCTG-TTACTGATTCTG
1 ATTCTGATT-CTGATTCTG
12835541 ATTCTGATTC
Statistics
Matches: 81, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
71 1 0.01
72 5 0.06
73 75 0.93
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.49
Consensus pattern (72 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGTTATTATACTAATACTGATTCT
GATTCTG
Found at i:12837583 original size:27 final size:27
Alignment explanation
Indices: 12837553--12837637 Score: 80
Period size: 27 Copynumber: 3.1 Consensus size: 27
12837543 CGACTTGTAA
* *
12837553 AATTACCAAAGTACTCTCGATTTACTG
1 AATTACCAAAGTACCCTCGATTTACAG
***
12837580 AATTACCATTTTACCCTCGATTTACAG
1 AATTACCAAAGTACCCTCGATTTACAG
**** *
12837607 AATTACCGTTTTACCCTCGATTTATAG
1 AATTACCAAAGTACCCTCGATTTACAG
12837634 AATT
1 AATT
12837638 GCCGTTTTAC
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.31, C:0.22, G:0.09, T:0.38
Consensus pattern (27 bp):
AATTACCAAAGTACCCTCGATTTACAG
Found at i:12837642 original size:27 final size:27
Alignment explanation
Indices: 12837568--12837817 Score: 306
Period size: 27 Copynumber: 9.3 Consensus size: 27
12837558 CCAAAGTACT
* *
12837568 CTCGATTTACTGAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
12837595 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
12837622 CTCGATTTATAGAATTGCCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
12837649 CTC-AGTTTACAGAATTACTGTTTTATC
1 CTCGA-TTTACAGAATTACCGTTTTACC
* *
12837676 CTCAATTTATAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
** *
12837703 CTCGATTTGTAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* * *
12837730 CTTGATTTACAGAATTACTGGTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* * *
12837757 CTC-AGTTTACAAAATTATCATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
*
12837784 CTCGATTCACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
12837811 CTCGATT
1 CTCGATT
12837818 GTGAAATTAC
Statistics
Matches: 189, Mismatches: 30, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
26 2 0.01
27 185 0.98
28 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.10, T:0.40
Consensus pattern (27 bp):
CTCGATTTACAGAATTACCGTTTTACC
Found at i:12837852 original size:27 final size:27
Alignment explanation
Indices: 12837822--12837962 Score: 174
Period size: 27 Copynumber: 5.2 Consensus size: 27
12837812 TCGATTGTGA
12837822 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* ** *
12837849 AATTTCCAAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
12837876 AATTACTGAAATACCCTTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
12837903 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
12837930 AATTACTGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
12837957 AATTAC
1 AATTAC
12837963 CATTTTGCCC
Statistics
Matches: 96, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:12837890 original size:54 final size:54
Alignment explanation
Indices: 12837822--12837964 Score: 205
Period size: 54 Copynumber: 2.6 Consensus size: 54
12837812 TCGATTGTGA
* *
12837822 AATTACTGAAATACCCCTGTAGGGTAGAATTTCCAAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAG
* * * *
12837876 AATTACTGAAATACCCTTATAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAG
* * *
12837930 AATTACTGAGATACCCTTGTGGGGTAAAATTACCA
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCA
12837965 TTTTGCCCCT
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 77 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.26
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAG
Found at i:12838200 original size:27 final size:26
Alignment explanation
Indices: 12838162--12838244 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
12838152 CGGAGGAAGC
*
12838162 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
*
12838189 GTTCTGGTGGCTCTGCCATAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
12838215 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
12838242 GTT
1 GTT
12838245 GACTGATCGA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 10 0.20
27 39 0.80
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.39
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:12838367 original size:22 final size:22
Alignment explanation
Indices: 12838332--12838390 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 22
12838322 CCCGTTATTA
* *
12838332 ATGGCTCTGAGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
12838354 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
12838376 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
12838391 ACGTATTTAC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:12838577 original size:27 final size:27
Alignment explanation
Indices: 12838555--12838628 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
12838545 TAGGTGGGTT
*
12838555 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
12838582 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
12838609 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
12838629 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:12838781 original size:6 final size:6
Alignment explanation
Indices: 12838770--12839010 Score: 212
Period size: 6 Copynumber: 39.8 Consensus size: 6
12838760 CTGTCACCTA
* * *
12838770 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATACTG ATTCTG ATTCTA
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
* * *
12838818 ATTCTG -TTACTG ATTCTG ATTCTG ATTCT- ATCACCTA ATTTTG ATTCTG
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
12838867 ATTCTG -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG
* * * *
12838915 ATTCT- ATAACTTA ATTCTG ATTCTG ATTCTG ATTTTG -TTACTA ATAT-TG
1 ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
12838964 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
12839011 CATTTTGGTT
Statistics
Matches: 193, Mismatches: 22, Indels: 40
0.76 0.09 0.16
Matches are distributed among these distances:
5 17 0.09
6 158 0.82
7 13 0.07
8 5 0.03
ACGTcount: A:0.22, C:0.16, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:12838879 original size:79 final size:79
Alignment explanation
Indices: 12838776--12839004 Score: 322
Period size: 79 Copynumber: 2.9 Consensus size: 79
12838766 CCTAATTCTG
*
12838776 ATTCTGATTCTGATTCTGTTACTAATACTGATTCTGATTCTAATTCTGTTACTGATTCTGATTCT
1 ATTCTGATTCTGATTCTGTTACTAATACTGATTCTGATTCTGATTCTGTTACTGATTCTGATTCT
*
12838841 GATTCTATCA-CCTA
66 GATTCT-TAATCCTA
*
12838855 ATTTTGATTCTGATTCTGTTACTAATACTGATTCTGATTCTGATTCTGTTACTGATTCTGATTCT
1 ATTCTGATTCTGATTCTGTTACTAATACTGATTCTGATTCTGATTCTGTTACTGATTCTGATTCT
* * *
12838920 -ATAACTTAATTCTG
66 GAT-TCTTAATCCTA
* *
12838934 ATTCTGATTCTGATTTTGTTACTAATATTGATTCTGATTCTGATTCTGATT-CTG-TTACTGATT
1 ATTCTGATTCTGATTCTGTTACTAATACTGATTCTGATTCTGATTCTG-TTACTGATT-CTGATT
12838997 CTGATTCT
64 CTGATTCT
12839005 GATTCTCATT
Statistics
Matches: 135, Mismatches: 10, Indels: 10
0.87 0.06 0.06
Matches are distributed among these distances:
78 6 0.04
79 125 0.93
80 4 0.03
ACGTcount: A:0.22, C:0.16, G:0.13, T:0.49
Consensus pattern (79 bp):
ATTCTGATTCTGATTCTGTTACTAATACTGATTCTGATTCTGATTCTGTTACTGATTCTGATTCT
GATTCTTAATCCTA
Found at i:12838892 original size:85 final size:83
Alignment explanation
Indices: 12838745--12839010 Score: 312
Period size: 85 Copynumber: 3.2 Consensus size: 83
12838735 TTGCATTCAT
* ** * *
12838745 ATTCTGATTTTGATTCTGTCACCTAATTCTGATTCTGATTCTGATT-CTGTTACTAATACTGATT
1 ATTCTGATTCTGATTCT-TCACCTAATTCTGATTCTGATTCTG-TTACTAATACTGATTCTGATT
12838809 CTGATTCTAATTCTGTTACTG
64 CTGATTCT-ATTCTGTTACTG
*
12838830 ATTCTGATTCTGATTCTATCACCTAATTTTGATTCTGATTCTGTTACTAATACTGATTCTGATTC
1 ATTCTGATTCTGATTCT-TCACCTAATTCTGATTCTGATTCTGTTACTAATACTGATTCTGATTC
12838895 TG-----ATTCTGTTACTG
65 TGATTCTATTCTGTTACTG
* * * * * *
12838909 ATTCTGATTCT-ATAACTTAATTCTGATTCTGATTCTGATTTTGTTACTAATATTGATTCTGATT
1 ATTCTGATTCTGAT-TCTTCA-CCTAATTCTGATTCTGATTCTGTTACTAATACTGATTCTGATT
12838973 CTGATTCTGATTCTGTTACTG
64 CTGATTCT-ATTCTGTTACTG
12838994 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
12839011 CATTTTGGTT
Statistics
Matches: 156, Mismatches: 15, Indels: 20
0.82 0.08 0.10
Matches are distributed among these distances:
78 4 0.03
79 66 0.42
84 2 0.01
85 82 0.53
86 2 0.01
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (83 bp):
ATTCTGATTCTGATTCTTCACCTAATTCTGATTCTGATTCTGTTACTAATACTGATTCTGATTCT
GATTCTATTCTGTTACTG
Found at i:12839031 original size:36 final size:34
Alignment explanation
Indices: 12838885--12839031 Score: 117
Period size: 36 Copynumber: 4.2 Consensus size: 34
12838875 ACTAATACTG
* *
12838885 ATTCTGATTCTGATTCTG-TTACTGATTCTGATTCT
1 ATTCTGATTCTGATTCTGATT-CTGATTTTG-TTCA
* *
12838920 ATAACTTAATTCTGATTCTGATTCTGATTTTGTTACTA
1 AT-TC-TGATTCTGATTCTGATTCTGATTTTGTT-C-A
*
12838958 ATAT-TGATTCTGATTCTGATTCTGATTCTGTT--
1 AT-TCTGATTCTGATTCTGATTCTGATTTTGTTCA
*
12838990 A--CTGATTCTGATTCTGATTCTCATTTTGGTTCCA
1 ATTCTGATTCTGATTCTGATTCTGATTTT-GTT-CA
12839024 ATTCTGAT
1 ATTCTGAT
12839032 AATGTTTCTT
Statistics
Matches: 91, Mismatches: 9, Indels: 23
0.74 0.07 0.19
Matches are distributed among these distances:
30 23 0.25
31 3 0.03
32 1 0.01
34 1 0.01
35 2 0.02
36 34 0.37
37 22 0.24
38 5 0.05
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (34 bp):
ATTCTGATTCTGATTCTGATTCTGATTTTGTTCA
Found at i:12841381 original size:8 final size:9
Alignment explanation
Indices: 12841357--12841391 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
12841347 TATATATTAG
*
12841357 TTTTTATTTG
1 TTTTT-TTTA
12841367 TTTTTTTTA
1 TTTTTTTTA
12841376 TTTTTTTTA
1 TTTTTTTTA
12841385 TTTTTTT
1 TTTTTTT
12841392 CCCTTTTTCG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 19 0.79
10 5 0.21
ACGTcount: A:0.09, C:0.00, G:0.03, T:0.89
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:12843886 original size:47 final size:48
Alignment explanation
Indices: 12843809--12843945 Score: 179
Period size: 47 Copynumber: 2.9 Consensus size: 48
12843799 AGGGTAAGAC
12843809 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCACACATCAAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCACACATCAAA
* * * * *
12843857 GTCGATGCCATGTCCC-GACATGGTCTTACACTGACTCTCATATATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGA--CTCACACATCAAA
* *
12843906 GCCGATGCCATATCCCAGATATGGTCTTACACTG-CTCACA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCACA
12843946 TCTGTCGGTG
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
47 23 0.30
48 15 0.19
49 23 0.30
50 16 0.21
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCACACATCAAA
Found at i:12843961 original size:49 final size:49
Alignment explanation
Indices: 12843811--12843973 Score: 199
Period size: 49 Copynumber: 3.3 Consensus size: 49
12843801 GGTAAGACGC
**
12843811 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCACA-C-ATCAAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCACATCTATC-GGGT
* * *
12843859 CGATGCCATGTCCC-GACATGGTCTTACACTGACTCTCATATATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCACATCTATCG-GGT
* * *
12843908 CGATGCCATATCCCAGATATGGTCTTACACTG-CTCACATCTGTCGGTGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCACATCTATCGG-GT
12843957 CGATGCCATGTCCCAGA
1 CGATGCCATGTCCCAGA
12843974 AAGTTATATA
Statistics
Matches: 98, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
47 23 0.23
48 15 0.15
49 44 0.45
50 16 0.16
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.26
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTCACATCTATCGGGT
Found at i:12850913 original size:17 final size:17
Alignment explanation
Indices: 12850876--12850915 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
12850866 TGGTATGAAT
*
12850876 GAACTATTATTTCATAT
1 GAACTATTATTTCATAC
* *
12850893 GAACTATTATTTTATGC
1 GAACTATTATTTCATAC
12850910 GAACTA
1 GAACTA
12850916 CCTATTCTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.42
Consensus pattern (17 bp):
GAACTATTATTTCATAC
Found at i:12859915 original size:46 final size:44
Alignment explanation
Indices: 12859774--12859988 Score: 184
Period size: 46 Copynumber: 4.7 Consensus size: 44
12859764 TATGTGCGCC
* * * * *
12859774 AGTGTTAGACATGTCTGGGACATGCATCGGCCAC-ATAATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GAT--GTGCT
* *
12859820 AGTGTAAGACGATGTCTGGGACATGGCATCGGCATTGA-GACAAGTGCT
1 AGTGTAAGAC-ATGTCTGGGACAT-GCATCGGC--T-ACGAGATGTGCT
* *
12859868 AGTGTAAGTCATCTCTGGGACATGCATCGGTCT-CGAGATGTTAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATG-T-GCT
* * * *
12859914 AGTGTCAGACATGTTTGGGACATGCGTTGGCTACGAGATGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGCT
*
12859958 AGTGTAAAACATGTCTGGGACATGCATCGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC
12859989 ATGGTTACAT
Statistics
Matches: 137, Mismatches: 21, Indels: 24
0.75 0.12 0.13
Matches are distributed among these distances:
44 33 0.24
45 5 0.04
46 50 0.36
47 26 0.19
48 20 0.15
50 1 0.01
51 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.26
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGCT
Found at i:12878679 original size:49 final size:49
Alignment explanation
Indices: 12878597--12878778 Score: 256
Period size: 49 Copynumber: 3.7 Consensus size: 49
12878587 TGAGGTCACG
*
12878597 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATTGGTCGCA
* * * * * *
12878646 TGTGTAGTACTAAGTGCAGGCTAATATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAA-TT-GGTCGCA
* *
12878697 TGTGTAGTACAAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATTGGTCGCA
*
12878746 TGTGTAGTACTAAGTGCAGGCTACTATGCGTAC
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTAC
12878779 TATATAGCCT
Statistics
Matches: 113, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 70 0.62
50 4 0.04
51 39 0.35
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATTGGTCGCA
Found at i:12878765 original size:100 final size:100
Alignment explanation
Indices: 12878592--12878778 Score: 356
Period size: 100 Copynumber: 1.9 Consensus size: 100
12878582 TATTGTGAGG
*
12878592 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACAAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
12878657 AAGTGCAGGCTAATATGCGTACCCGATAACTTCGA
66 AAGTGCAGGCTAATATGCGTACCCGATAACTTCGA
12878692 TCACGTGTGTAGTACAAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACAAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
*
12878757 AAGTGCAGGCTACTATGCGTAC
66 AAGTGCAGGCTAATATGCGTAC
12878779 TATATAGCCT
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
100 85 1.00
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (100 bp):
TCACGTGTGTAGTACAAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTAATATGCGTACCCGATAACTTCGA
Found at i:12885997 original size:27 final size:26
Alignment explanation
Indices: 12885953--12886074 Score: 113
Period size: 27 Copynumber: 4.5 Consensus size: 26
12885943 TTAGTTTGCC
12885953 AAATTACTGAAATA-CCTCCAGTTGTA
1 AAATTAC-GAAATACCCTCCAGTTGTA
* * *
12885979 AAATTACCAAAGTACCCTCGATTTGTA
1 AAATTACGAAA-TACCCTCCAGTTGTA
*
12886006 AAATTATCGAAATACCCT-CAGTTTGCA
1 AAATTA-CGAAATACCCTCCAG-TTGTA
* * *
12886033 AACTTACTGAAATACCCTCGATTTGTA
1 AAATTAC-GAAATACCCTCCAGTTGTA
12886060 AAATTACTGAAATAC
1 AAATTAC-GAAATAC
12886075 TCCTGTAAGA
Statistics
Matches: 78, Mismatches: 12, Indels: 11
0.77 0.12 0.11
Matches are distributed among these distances:
25 3 0.04
26 11 0.14
27 59 0.76
28 5 0.06
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (26 bp):
AAATTACGAAATACCCTCCAGTTGTA
Found at i:12886119 original size:27 final size:27
Alignment explanation
Indices: 12886088--12886230 Score: 126
Period size: 27 Copynumber: 5.3 Consensus size: 27
12886078 TGTAAGATAG
*
12886088 AATTACCATTTTACCCTCGACTTACAA
1 AATTACCATTTTACCCTCGATTTACAA
* *** *
12886115 CATTATTGTTTTACCTTCGATTTACAA
1 AATTACCATTTTACCCTCGATTTACAA
* * *
12886142 AATTACCATTTTACCCTCAATTTATAG
1 AATTACCATTTTACCCTCGATTTACAA
*
12886169 AATTA-CATTTTTATCCTCGATTTACAA
1 AATTACCA-TTTTACCCTCGATTTACAA
*** ** *
12886196 AATTACCAAAATACCCTCGATCAATAA
1 AATTACCATTTTACCCTCGATTTACAA
12886223 AATTACCA
1 AATTACCA
12886231 AAATACCCCT
Statistics
Matches: 89, Mismatches: 25, Indels: 4
0.75 0.21 0.03
Matches are distributed among these distances:
26 2 0.02
27 85 0.96
28 2 0.02
ACGTcount: A:0.36, C:0.23, G:0.04, T:0.37
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTTACAA
Found at i:12886148 original size:54 final size:54
Alignment explanation
Indices: 12886088--12886203 Score: 148
Period size: 54 Copynumber: 2.1 Consensus size: 54
12886078 TGTAAGATAG
* *
12886088 AATTACCATTTTACCCTCGACTTACA-ACATTA-TTGTTTTA-CCTTCGATTTACAA
1 AATTACCATTTTACCCTCAACTTACAGA-ATTACAT-TTTTATCC-TCGATTTACAA
* *
12886142 AATTACCATTTTACCCTCAATTTATAGAATTACATTTTTATCCTCGATTTACAA
1 AATTACCATTTTACCCTCAACTTACAGAATTACATTTTTATCCTCGATTTACAA
12886196 AATTACCA
1 AATTACCA
12886204 AAATACCCTC
Statistics
Matches: 55, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
54 51 0.93
55 4 0.07
ACGTcount: A:0.33, C:0.22, G:0.04, T:0.41
Consensus pattern (54 bp):
AATTACCATTTTACCCTCAACTTACAGAATTACATTTTTATCCTCGATTTACAA
Found at i:12886272 original size:27 final size:27
Alignment explanation
Indices: 12886194--12886281 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 27
12886184 CTCGATTTAC
***
12886194 AAAATTACCAAAATA-CCCTCGATCAAT
1 AAAATTACCAAAATACCCCT-GATTTGT
12886221 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
*
12886248 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
*
12886275 GAAATTA
1 AAAATTA
12886282 TTGAAATACC
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 51 0.93
28 4 0.07
ACGTcount: A:0.45, C:0.22, G:0.06, T:0.27
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:12886307 original size:27 final size:27
Alignment explanation
Indices: 12886284--12886714 Score: 573
Period size: 27 Copynumber: 16.0 Consensus size: 27
12886274 TGAAATTATT
* *
12886284 GAAATACCCTTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
12886311 GAAATACCCCTGTAAGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
12886338 GGAATGCCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
12886365 GAAATACCCCTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
12886392 GGAATACTCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
12886419 GGAATACCCTTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
12886446 GGAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
12886473 -AGAATACCCCTGTAGGTTAGAATTACC
1 GA-AATACCCCTGTAGGGTAGAATTACC
* *
12886500 GAAATA-CCTTAGTAGGGTAGAATTATC
1 GAAATACCCCT-GTAGGGTAGAATTACC
* *
12886527 GCAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
12886554 GCAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
12886581 GAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
12886608 GCAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
12886635 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
12886662 AAAATACCCCTGTAGGGT-GAAATTACC
1 GAAATACCCCTGTAGGGTAG-AATTACC
* * * *
12886689 GAGATA-CCTTGTGGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
12886715 ATTTTGCCCC
Statistics
Matches: 358, Mismatches: 40, Indels: 13
0.87 0.10 0.03
Matches are distributed among these distances:
26 20 0.06
27 334 0.93
28 4 0.01
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:12887193 original size:22 final size:21
Alignment explanation
Indices: 12887141--12887205 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 21
12887131 TTAAAGCCTT
*
12887141 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGG-TTTGTGCCAAC
*
12887163 CT-ACATATGGTTCTGTGCCAAC
1 CTGA-TTATGGTT-TGTGCCAAC
12887185 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGTT-TGTGCCAA
12887206 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
21 3 0.08
22 32 0.89
23 1 0.03
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (21 bp):
CTGATTATGGTTTGTGCCAAC
Found at i:12887415 original size:27 final size:26
Alignment explanation
Indices: 12887364--12887438 Score: 78
Period size: 27 Copynumber: 2.8 Consensus size: 26
12887354 TTCTGTTAAG
* * * *
12887364 TGGCTTTGCCATATTATCTGTTTCTTC
1 TGGCTATGCCACAATATCTG-TTCTAC
*
12887391 TGGCTATGCCACAAATATCTGTTCTAG
1 TGGCTATGCCAC-AATATCTGTTCTAC
*
12887418 TGGCTCTGCCACAATATCTGT
1 TGGCTATGCCACAATATCTGT
12887439 ATCTGGTGAC
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
26 9 0.22
27 25 0.61
28 7 0.17
ACGTcount: A:0.19, C:0.24, G:0.17, T:0.40
Consensus pattern (26 bp):
TGGCTATGCCACAATATCTGTTCTAC
Found at i:12887451 original size:27 final size:26
Alignment explanation
Indices: 12887397--12887464 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 26
12887387 CTTCTGGCTA
*
12887397 TGCCACAAATATCTGTTCTAGTGGCTC
1 TGCCAC-AATATCTGTTCTAGTGACTC
*
12887424 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGT-TCTAGTGACTC
*
12887451 TGTCACAATATCTG
1 TGCCACAATATCTG
12887465 ATAACTGAGC
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 9 0.24
27 28 0.76
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.34
Consensus pattern (26 bp):
TGCCACAATATCTGTTCTAGTGACTC
Found at i:12887640 original size:25 final size:25
Alignment explanation
Indices: 12887610--12887664 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
12887600 TTCTGATTTT
* *
12887610 TGATTCTGTTACCTGATACTGATTC
1 TGATTCTGTCACCTAATACTGATTC
*
12887635 TGATTCTGTCACCTAATTCTGATTC
1 TGATTCTGTCACCTAATACTGATTC
12887660 TGATT
1 TGATT
12887665 TTGATTCTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.45
Consensus pattern (25 bp):
TGATTCTGTCACCTAATACTGATTC
Found at i:12889720 original size:27 final size:27
Alignment explanation
Indices: 12889628--12889780 Score: 109
Period size: 27 Copynumber: 5.7 Consensus size: 27
12889618 TTAGTTTACC
*
12889628 AAATTACTGAAATA-CCTCT-AGTTGTA
1 AAATTACTGAAATATCCT-TGATTTGTA
* * ** *
12889654 AAATTAC-CAAAGTACCCCCGATTTATA
1 AAATTACTGAAA-TATCCTTGATTTGTA
**
12889681 AAATTACCCAAATATCCTTGATTTGTA
1 AAATTACTGAAATATCCTTGATTTGTA
* * *
12889708 AAATTA-TCGAAATA-CCCTCAGTTTGTC
1 AAATTACT-GAAATATCCTTGA-TTTGTA
* *
12889735 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATATCCTTGATTTGTA
12889762 AAATTACTGAAATACTCCT
1 AAATTACTGAAATA-TCCT
12889781 GTAAGATAGA
Statistics
Matches: 99, Mismatches: 19, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
25 3 0.03
26 13 0.13
27 72 0.73
28 11 0.11
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATTACTGAAATATCCTTGATTTGTA
Found at i:12889775 original size:81 final size:81
Alignment explanation
Indices: 12889628--12889780 Score: 188
Period size: 81 Copynumber: 1.9 Consensus size: 81
12889618 TTAGTTTACC
12889628 AAATTACTGAAATACCTCTAGTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAAA
1 AAATTACTGAAATACCTCTAGTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAAA
12889693 TA-TCCTTGATTTGTA
66 TACTCCTTGATTTGTA
* * * * *
12889708 AAATTA-TCGAAATACC-CTCAGTTTGTCAAATTACTGAAA-TACCCTCGATTTGTAAAATTACT
1 AAATTACT-GAAATACCTCT-AG-TTGTAAAATTAC-CAAAGTACCCCCGATTTATAAAATTACC
*
12889770 GAAATACTCCT
62 CAAATACTCCT
12889781 GTAAGATAGA
Statistics
Matches: 62, Mismatches: 6, Indels: 8
0.82 0.08 0.11
Matches are distributed among these distances:
79 3 0.05
80 16 0.26
81 36 0.58
82 7 0.11
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (81 bp):
AAATTACTGAAATACCTCTAGTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAAA
TACTCCTTGATTTGTA
Found at i:12889818 original size:27 final size:27
Alignment explanation
Indices: 12889788--12889903 Score: 178
Period size: 27 Copynumber: 4.3 Consensus size: 27
12889778 CCTGTAAGAT
12889788 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * *
12889815 AGAATTATCGTTTTACCTTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* *
12889842 AAAATTACCATTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
12889869 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
12889896 AAAATTAC
1 AGAATTAC
12889904 TAAAATACCT
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 78 1.00
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:12889821 original size:81 final size:81
Alignment explanation
Indices: 12889735--12889959 Score: 201
Period size: 81 Copynumber: 2.8 Consensus size: 81
12889725 TCAGTTTGTC
** *
12889735 AAATTACTGAAATACCCTCGATTTGTAAAATTACTGA-AATACTCCT-G-TAAGATAGAATTACC
1 AAATTACTGAAATACCCTCGATTTACAAAATTAC-CATAATAC-CCTCGAT-AGATAGAATTACC
12889797 ATTTTACCCTCGATTTACA
63 ATTTTACCCTCGATTTACA
* *** * ** **
12889816 GAATTA-TCGTTTTACCTTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTACCAT
1 AAATTACT-GAAATACCCTCGATTTACAAAATTACCATAATACCCTCGATAGATAGAATTACCAT
12889880 TTTACCCTCGATTTACA
65 TTTACCCTCGATTTACA
* ** * *
12889897 AAATTACTAAAATA-CCTTTAGTTTACAAAATTACCAAAATACCCTCGATCA-ATAAAATTACCA
1 AAATTACTGAAATACCCTCGA-TTTACAAAATTACCATAATACCCTCGAT-AGATAGAATTACCA
12889960 AAATACCCCT
Statistics
Matches: 112, Mismatches: 25, Indels: 14
0.74 0.17 0.09
Matches are distributed among these distances:
80 8 0.07
81 102 0.91
82 2 0.02
ACGTcount: A:0.37, C:0.21, G:0.07, T:0.35
Consensus pattern (81 bp):
AAATTACTGAAATACCCTCGATTTACAAAATTACCATAATACCCTCGATAGATAGAATTACCATT
TTACCCTCGATTTACA
Found at i:12889912 original size:27 final size:27
Alignment explanation
Indices: 12889653--12890020 Score: 165
Period size: 27 Copynumber: 13.6 Consensus size: 27
12889643 CTCTAGTTGT
* * *
12889653 AAAATTACCAAAGTACCCCCGATTTAT
1 AAAATTACCAAAATACCCTCGATTTAC
* * * **
12889680 AAAATTACCCAAATATCCTTGATTTGT
1 AAAATTACCAAAATACCCTCGATTTAC
* * *
12889707 AAAATTATCGAAATACCCTC-AGTTTGTC
1 AAAATTACCAAAATACCCTCGA-TTT-AC
** **
12889735 -AAATTACTGAAATACCCTCGATTTGT
1 AAAATTACCAAAATACCCTCGATTTAC
** * *
12889761 AAAATTACTGAAATACTCCT-G--TAAG
1 AAAATTACCAAAATAC-CCTCGATTTAC
***
12889786 ATAGAATTACCATTTTACCCTCGATTTAC
1 A-A-AATTACCAAAATACCCTCGATTTAC
* * **** *
12889815 AGAATTATCGTTTTACCTTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
*** *
12889842 AAAATTACCATTTTACCCTCGATTTAT
1 AAAATTACCAAAATACCCTCGATTTAC
* ***
12889869 AGAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* **
12889896 AAAATTACTAAAATA-CCTTTAGTTTAC
1 AAAATTACCAAAATACCCTCGA-TTTAC
** *
12889923 AAAATTACCAAAATACCCTCGATCAAT
1 AAAATTACCAAAATACCCTCGATTTAC
* **
12889950 AAAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTAC
* **
12889977 AAAATTACCAAAATACCCTTGATTTGT
1 AAAATTACCAAAATACCCTCGATTTAC
* *
12890004 GAAATTACCGAAATACC
1 AAAATTACCAAAATACC
12890021 ATTGTATGGT
Statistics
Matches: 269, Mismatches: 58, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
25 2 0.01
26 11 0.04
27 244 0.91
28 9 0.03
29 3 0.01
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGATTTAC
Found at i:12890036 original size:27 final size:27
Alignment explanation
Indices: 12890006--12890470 Score: 542
Period size: 27 Copynumber: 17.3 Consensus size: 27
12889996 TGATTTGTGA
** *
12890006 AATTACCGAAATACCATTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
12890033 AATTACTAAAATACCCATGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
12890060 AATTACC-AGAATACCCCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
*
12890087 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
12890114 AATTACCGAAATACCCCTATAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
*
12890141 AATTACCGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
12890168 AATTACCGGAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
12890195 AATTA-CTAGAATACCTCTATAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
*
12890222 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
12890249 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
12890276 AATTACCGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
12890303 AATTATCGCAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
12890330 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
12890357 AATTATCGCAATACCCCTCTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
12890384 AATTATTGAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*** *
12890411 AATTATTAAAATACCCATGTAGGGT-G
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
12890437 AAATTACCGAGATA-CCTTGTGGGGTAA
1 -AATTACCGAAATACCCCTGTAGGGTAG
12890464 AATTACC
1 AATTACC
12890471 ATTTTGCCCC
Statistics
Matches: 381, Mismatches: 51, Indels: 13
0.86 0.11 0.03
Matches are distributed among these distances:
26 19 0.05
27 360 0.94
28 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:12890037 original size:54 final size:54
Alignment explanation
Indices: 12889882--12890048 Score: 138
Period size: 54 Copynumber: 3.1 Consensus size: 54
12889872 ATTACCATTT
** * * ** ***
12889882 TACCCTCGATTTACAAAATTACTAAAATACCTTTAGTTTACAAAATTACCAAAA
1 TACCCTCGATCAATAAAATTACCAAAATACCCATAGTTGGTAAAATTACCAAAA
* *
12889936 TACCCTCGATCAATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTCGATCAATAAAATTACCAAAATACCCATAGTTGGTAAAATTACCAAAA
* *** * * * * *
12889990 TACCCTTGATTTGTGAAATTACCGAAATA-CCATTGTATGGTAGAATTACTAAAA
1 TACCCTCGATCAATAAAATTACCAAAATACCCATAGT-TGGTAAAATTACCAAAA
12890044 TACCC
1 TACCC
12890049 ATGTAGGGTA
Statistics
Matches: 93, Mismatches: 19, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
53 5 0.05
54 88 0.95
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (54 bp):
TACCCTCGATCAATAAAATTACCAAAATACCCATAGTTGGTAAAATTACCAAAA
Found at i:12890037 original size:81 final size:82
Alignment explanation
Indices: 12889952--12890471 Score: 443
Period size: 81 Copynumber: 6.4 Consensus size: 82
12889942 CGATCAATAA
** * **
12889952 AATTACCAAAATACCCCTAGT-TTGTAAAATTACCAAAATACCCTTG-ATTTGT-GAAATTACCG
1 AATTACCAAAATACCCCTAGTAGGGTAAAATTACCAAAATACCCCTGTA-GGGTAG-AATTACCG
* *
12890014 AAATACCATTGTATGGTAG
64 AAATACCACTGTAGGGTAG
* * * * *
12890033 AATTACTAAAATACCCAT-GTAGGGTAGAATTACCAGAATACCCCTGTAGGGTAGAATTACTGAA
1 AATTACCAAAATACCCCTAGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAA
*
12890097 ATACCCCTGTAGGGTAG
66 ATACCACTGTAGGGTAG
* * * *
12890114 AATTACCGAAATACCCCTA-TAGGGTAAAATTACCGAAATACCTCTGTAGGGTAGAATTACCGGA
1 AATTACCAAAATACCCCTAGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAA
* * *
12890178 ATACCCCTATAAGGTAG
66 ATACCACTGTAGGGTAG
* * * * ** *
12890195 AATTACTAGAATACCTCTA-TAGGGTAGAATTACCGGAATACCCCTGTAGGGTAGAATTACCGGA
1 AATTACCAAAATACCCCTAGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAA
*
12890259 ATACCCCTGTAGGGTAG
66 ATACCACTGTAGGGTAG
* * * * ** *
12890276 AATTACCGAAATACCTCT-GTAGGGTAGAATTATCGCAATACCTCTGTAGGGTAGAATTACCGAA
1 AATTACCAAAATACCCCTAGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAA
*
12890340 ATACCCCTGTAGGGTAG
66 ATACCACTGTAGGGTAG
* ** * * *** * * ***
12890357 AATTATCGCAATACCCCT-CTAGGGTAGAATTATTGAAATACCCCTATAAGGTAGAATTATTAAA
1 AATTACCAAAATACCCCTAGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAA
12890421 ATACC-CATGTAGGGT-G
66 ATACCAC-TGTAGGGTAG
* * * *
12890437 AAATTACCGAGATA--CCTTGTGGGGTAAAATTACCA
1 -AATTACCAAAATACCCCTAGTAGGGTAAAATTACCA
12890472 TTTTGCCCCT
Statistics
Matches: 370, Mismatches: 61, Indels: 17
0.83 0.14 0.04
Matches are distributed among these distances:
79 3 0.01
80 15 0.04
81 350 0.95
82 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.26
Consensus pattern (82 bp):
AATTACCAAAATACCCCTAGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAA
ATACCACTGTAGGGTAG
Found at i:12890949 original size:22 final size:22
Alignment explanation
Indices: 12890897--12890961 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
12890887 TTAAAGCCTT
* *
12890897 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
12890919 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
12890941 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
12890962 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:12891150 original size:27 final size:27
Alignment explanation
Indices: 12891120--12891220 Score: 123
Period size: 27 Copynumber: 3.7 Consensus size: 27
12891110 ATTCTGTTAA
* *
12891120 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
12891147 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* *
12891174 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
* * *
12891201 GTGACTCTGTCACAATATCT
1 GTGGCTATGCCACAATATCT
12891221 AATAACTGAG
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 8 0.12
27 51 0.77
28 7 0.11
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.37
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:12891404 original size:31 final size:31
Alignment explanation
Indices: 12891358--12891429 Score: 108
Period size: 31 Copynumber: 2.3 Consensus size: 31
12891348 TTGCATTCAC
* *
12891358 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTATTACCAGATACTG
12891390 ATTCTGATTTTGATTCTATTACCAGATACTG
1 ATTCTGATTTTGATTCTATTACCAGATACTG
*
12891421 CTTCTGATT
1 ATTCTGATT
12891430 CTGTCACCTA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
31 30 0.81
32 7 0.19
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTATTACCAGATACTG
Found at i:12891450 original size:25 final size:25
Alignment explanation
Indices: 12891389--12891454 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
12891379 ACCTGATACT
* *
12891389 GATTCTGATTTTGATTCTATTACCA
1 GATTCTGATTCTGATTCTATCACCA
* * *
12891414 GATACTGCTTCTGATTCTGTCACCTA
1 GATTCTGATTCTGATTCTATCACC-A
12891440 -ATTCTGATTCTGATT
1 GATTCTGATTCTGATT
12891455 TTGATTCTAG
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
25 32 0.97
26 1 0.03
ACGTcount: A:0.21, C:0.20, G:0.14, T:0.45
Consensus pattern (25 bp):
GATTCTGATTCTGATTCTATCACCA
Found at i:12892662 original size:22 final size:23
Alignment explanation
Indices: 12892598--12892734 Score: 136
Period size: 22 Copynumber: 5.9 Consensus size: 23
12892588 AAGCTCCTGC
12892598 TGAGCTGATAGACAGTAAGCTCTAT
1 TGAGCTGA-A-ACAGTAAGCTCTAT
*
12892623 TAAGCTGAAACAGTAAGCTCTAT
1 TGAGCTGAAACAGTAAGCTCTAT
* *
12892646 CGAGCT-AAATAGTAAGCTCTAT
1 TGAGCTGAAACAGTAAGCTCTAT
*
12892668 TGAGCTG-AATAGTAAGCTC-AT
1 TGAGCTGAAACAGTAAGCTCTAT
* * *
12892689 AAGAGCTGAAACAGTAAGCTCCAA
1 -TGAGCTGAAACAGTAAGCTCTAT
* *
12892713 TAAGATGAAAACAGTAAGCTCT
1 TGAGCTG-AAACAGTAAGCTCT
12892735 TACGAGCTGA
Statistics
Matches: 95, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
21 2 0.02
22 38 0.40
23 33 0.35
24 15 0.16
25 7 0.07
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (23 bp):
TGAGCTGAAACAGTAAGCTCTAT
Found at i:12892663 original size:45 final size:47
Alignment explanation
Indices: 12892599--12892744 Score: 167
Period size: 45 Copynumber: 3.1 Consensus size: 47
12892589 AGCTCCTGCT
12892599 GAGCTGATAGACAGTAAGCTCTATTAAGCTGAAACAGTAAGCTCTAT-C
1 GAGCTGA-A-ACAGTAAGCTCTATTAAGCTGAAACAGTAAGCTCTATAC
* * * *
12892647 GAGCT-AAATAGTAAGCTCTATTGAGCTG-AATAGTAAGCTC-ATAA
1 GAGCTGAAACAGTAAGCTCTATTAAGCTGAAACAGTAAGCTCTATAC
* * *
12892691 GAGCTGAAACAGTAAGCTCCAATAAGATGAAAACAGTAAGCTCT-TAC
1 GAGCTGAAACAGTAAGCTCTATTAAGCTG-AAACAGTAAGCTCTATAC
12892738 GAGCTGA
1 GAGCTGA
12892745 TATATCGGTA
Statistics
Matches: 82, Mismatches: 11, Indels: 11
0.79 0.11 0.11
Matches are distributed among these distances:
43 2 0.02
44 16 0.20
45 37 0.45
46 1 0.01
47 21 0.26
48 5 0.06
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.23
Consensus pattern (47 bp):
GAGCTGAAACAGTAAGCTCTATTAAGCTGAAACAGTAAGCTCTATAC
Found at i:12894829 original size:210 final size:210
Alignment explanation
Indices: 12894467--12894889 Score: 846
Period size: 210 Copynumber: 2.0 Consensus size: 210
12894457 TCTGAAGTTG
12894467 CTTTTAAACTATCACGAATCATTTTCACTTTTTCTTCAGTTTCTCTGATCAGTTCAACCCCGTGA
1 CTTTTAAACTATCACGAATCATTTTCACTTTTTCTTCAGTTTCTCTGATCAGTTCAACCCCGTGA
12894532 ATCTTTTTCTCACTCAATTCAGTCCAGTACAGTGGAGTTTGACATTTGCAGCCATATAAAGCTTC
66 ATCTTTTTCTCACTCAATTCAGTCCAGTACAGTGGAGTTTGACATTTGCAGCCATATAAAGCTTC
12894597 GTATGGTGCCATCTTTATACTTGTTTGGAAACTGTTGTTATACGTAAATTCAATCAAAGGTAAGT
131 GTATGGTGCCATCTTTATACTTGTTTGGAAACTGTTGTTATACGTAAATTCAATCAAAGGTAAGT
12894662 ATTTTTCCCAACCGC
196 ATTTTTCCCAACCGC
12894677 CTTTTAAACTATCACGAATCATTTTCACTTTTTCTTCAGTTTCTCTGATCAGTTCAACCCCGTGA
1 CTTTTAAACTATCACGAATCATTTTCACTTTTTCTTCAGTTTCTCTGATCAGTTCAACCCCGTGA
12894742 ATCTTTTTCTCACTCAATTCAGTCCAGTACAGTGGAGTTTGACATTTGCAGCCATATAAAGCTTC
66 ATCTTTTTCTCACTCAATTCAGTCCAGTACAGTGGAGTTTGACATTTGCAGCCATATAAAGCTTC
12894807 GTATGGTGCCATCTTTATACTTGTTTGGAAACTGTTGTTATACGTAAATTCAATCAAAGGTAAGT
131 GTATGGTGCCATCTTTATACTTGTTTGGAAACTGTTGTTATACGTAAATTCAATCAAAGGTAAGT
12894872 ATTTTTCCCAACCGC
196 ATTTTTCCCAACCGC
12894887 CTT
1 CTT
12894890 CAAACTCTAG
Statistics
Matches: 213, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
210 213 1.00
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.38
Consensus pattern (210 bp):
CTTTTAAACTATCACGAATCATTTTCACTTTTTCTTCAGTTTCTCTGATCAGTTCAACCCCGTGA
ATCTTTTTCTCACTCAATTCAGTCCAGTACAGTGGAGTTTGACATTTGCAGCCATATAAAGCTTC
GTATGGTGCCATCTTTATACTTGTTTGGAAACTGTTGTTATACGTAAATTCAATCAAAGGTAAGT
ATTTTTCCCAACCGC
Found at i:12899280 original size:27 final size:27
Alignment explanation
Indices: 12899112--12899290 Score: 112
Period size: 27 Copynumber: 6.6 Consensus size: 27
12899102 TAAATTGTAC
*
12899112 AGCACTAAGTGTGCGA-TTCTACTT-TGT
1 AGCACTAAGTGTGCGAGTT-GA-TTATGT
* ** *
12899139 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * ** **
12899165 ATGCACTAAGAGTGCGAATTGACCATAC
1 A-GCACTAAGTGTGCGAGTTGATTATGT
* * *
12899193 GGCACTAAGTGTGCGGAGTCTAACTATGT
1 AGCACTAAGTGTGC-GAGT-TGATTATGT
* *
12899222 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * *
12899249 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
12899276 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
12899291 GGCTCAATAT
Statistics
Matches: 116, Mismatches: 30, Indels: 12
0.73 0.19 0.08
Matches are distributed among these distances:
26 1 0.01
27 90 0.78
28 7 0.06
29 18 0.16
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:12899281 original size:83 final size:82
Alignment explanation
Indices: 12899109--12899291 Score: 201
Period size: 83 Copynumber: 2.2 Consensus size: 82
12899099 GATTAAATTG
* * * *
12899109 TACAGCACTAAGTGTGC-GATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTA
1 TACAGCACTAAGTGTGCGGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTA
12899173 AGAGTGCGAATTGACCA
66 AGAGTGCGAATTGACCA
* ** *
12899190 TACGGCACTAAGTGTGCGGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCAC
1 TACAGCACTAAGTGTGCGGAGTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCAC
* **
12899254 TAA-ATGTGCGAGTTGATTA
64 TAAGA-GTGCGAATTGACCA
* *
12899273 TATAGCACTGAGTGTGCGG
1 TACAGCACTAAGTGTGCGG
12899292 GCTCAATATA
Statistics
Matches: 84, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
81 16 0.19
82 7 0.08
83 61 0.73
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (82 bp):
TACAGCACTAAGTGTGCGGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTA
AGAGTGCGAATTGACCA
Found at i:12921247 original size:16 final size:16
Alignment explanation
Indices: 12921226--12921257 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
12921216 CGAAAAGTCA
12921226 AGAAATATGAATCCTC
1 AGAAATATGAATCCTC
12921242 AGAAATATGAATCCTC
1 AGAAATATGAATCCTC
12921258 GTCCCCAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25
Consensus pattern (16 bp):
AGAAATATGAATCCTC
Found at i:12926383 original size:46 final size:46
Alignment explanation
Indices: 12926333--12926498 Score: 212
Period size: 46 Copynumber: 3.5 Consensus size: 46
12926323 TGAGCATCCA
12926333 AACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCG
* * ** *
12926379 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGATTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATG-CGAA-T--G--TTCG
12926428 AACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCG
12926474 AACTCGTTGAGTTGAGTCCGAGTTC
1 AACTCGTTGAGTTGAGTCCGAGTTC
12926499 GTGAGATGTA
Statistics
Matches: 101, Mismatches: 10, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
43 4 0.04
44 2 0.02
45 3 0.03
46 53 0.52
47 1 0.01
48 1 0.01
49 28 0.28
50 3 0.03
51 2 0.02
52 4 0.04
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCG
Found at i:12926489 original size:95 final size:93
Alignment explanation
Indices: 12926326--12926550 Score: 423
Period size: 95 Copynumber: 2.4 Consensus size: 93
12926316 GGATGGTTGA
12926326 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
12926391 TGAGTCCGAGTTCGTGAGATGATTAACTAG
66 TGAGTCCGAGTTCGTGAGATG--TAACTAG
*
12926421 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
12926486 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
12926514 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTA
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTA
12926551 GGGGCGGGTT
Statistics
Matches: 128, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
93 43 0.34
95 85 0.66
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:12929217 original size:18 final size:19
Alignment explanation
Indices: 12929182--12929217 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
12929172 TCATATGCTG
*
12929182 CAATCGTAGATAGCAAAAA
1 CAATAGTAGATAGCAAAAA
12929201 CAATAGTAGAT-GCAAAA
1 CAATAGTAGATAGCAAAA
12929218 TATCCCACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.53, C:0.14, G:0.17, T:0.17
Consensus pattern (19 bp):
CAATAGTAGATAGCAAAAA
Found at i:12941925 original size:22 final size:19
Alignment explanation
Indices: 12941886--12941927 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
12941876 TGTAAAGTTG
12941886 ATAATAATTAATATATATT
1 ATAATAATTAATATATATT
12941905 ATAATAGATATAATTATATATT
1 ATAATA-AT-TAA-TATATATT
12941927 A
1 A
12941928 ATAACTATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 3 0.15
22 9 0.45
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
ATAATAATTAATATATATT
Found at i:12942041 original size:29 final size:30
Alignment explanation
Indices: 12941982--12942042 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
12941972 GCCTTTTAAA
* * *
12941982 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGGCAACCAAATTTT
*
12942012 AATATTTGCAAAAAGA-GCAACCAAATTTT
1 AATATTTACAAAAAGAGGCAACCAAATTTT
12942041 AA
1 AA
12942043 AAATAGTTCA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
29 12 0.44
30 15 0.56
ACGTcount: A:0.48, C:0.11, G:0.10, T:0.31
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGCAACCAAATTTT
Found at i:12945279 original size:40 final size:41
Alignment explanation
Indices: 12945203--12945470 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 41
12945193 AACCCAAGTA
* * *
12945203 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
* *
12945242 CCTTCGAGTCTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
*
12945282 CCTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTA---GCACAAATG
* *
12945325 CCTTCAGGACTTCGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
* *
12945365 CCTTCGGGACTTAGCCCGTATATAG-GAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTA---GCACAAATG
* * *
12945408 CCTCCGGGACTTCGCCCAGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
12945448 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
12945471 CATCCGAATA
Statistics
Matches: 194, Mismatches: 23, Indels: 23
0.81 0.10 0.10
Matches are distributed among these distances:
39 12 0.06
40 111 0.57
41 1 0.01
43 69 0.36
44 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (41 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
Found at i:12945323 original size:83 final size:83
Alignment explanation
Indices: 12945203--12945470 Score: 402
Period size: 83 Copynumber: 3.3 Consensus size: 83
12945193 AACCCAAGTA
* * * *
12945203 CCTTCGGGATTTAG-CCGGATATAGC-A--ACTCGTACAAATGCCTTCGAGTCTTAGCCCGGATA
1 CCTTCGGGACTTAGCCCGGATATAGCAACTACTCGCACAAATGCCTTCGAGACTTCGCCCGGATA
12945264 TAGTCACTAGCACAAATG
66 TAGTCACTAGCACAAATG
*
12945282 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTC-AGGACTTCGCCCGGAT
1 CCTTCGGGACTTAGCCCGGATATAGCAACTACTCGCACAAATGCCTTCGA-GACTTCGCCCGGAT
12945346 ATAGTCACTAGCACAAATG
65 ATAGTCACTAGCACAAATG
* * * * *
12945365 CCTTCGGGACTTAGCCCGTATATAGGAACTACTCGCACAAATGCCTCCGGGACTTCGCCCAGATA
1 CCTTCGGGACTTAGCCCGGATATAGCAACTACTCGCACAAATGCCTTCGAGACTTCGCCCGGATA
12945430 TAGTCACTAGCACAAATG
66 TAGTCACTAGCACAAATG
12945448 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
12945471 CATCCGAATA
Statistics
Matches: 171, Mismatches: 12, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
79 13 0.08
80 10 0.06
81 1 0.01
82 1 0.01
83 146 0.85
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (83 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTACTCGCACAAATGCCTTCGAGACTTCGCCCGGATA
TAGTCACTAGCACAAATG
Found at i:12945443 original size:123 final size:121
Alignment explanation
Indices: 12945203--12945470 Score: 310
Period size: 123 Copynumber: 2.2 Consensus size: 121
12945193 AACCCAAGTA
* * * * *
12945203 CCTTCGGGATTTAG-CCGGATATAGCAACTCGTACAAATGCCTTCGAGTCTTAGCCCGGATATAG
1 CCTTCAGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATAG
* * * *
12945267 TCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
66 ACACTAGCACAAATGCCTCCGGGACTTAGCCCAGATATAGCAACTA--CGCACAAATG
* * *
12945325 CCTTCAGGACTTCGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGTATATA
1 CCTTCAGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATA
* *
12945389 GGAACTACTCGCACAAATGCCTCCGGGACTTCGCCCAGATATAGTC-ACTA-GCACAAATG
65 -G-AC-ACTAGCACAAATGCCTCCGGGACTTAGCCCAGATATAG-CAACTACGCACAAATG
*
12945448 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCAGGACTTAGCCCGGATAT
12945471 CATCCGAATA
Statistics
Matches: 124, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
122 11 0.09
123 72 0.58
124 2 0.02
125 1 0.01
126 37 0.30
127 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (121 bp):
CCTTCAGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATAG
ACACTAGCACAAATGCCTCCGGGACTTAGCCCAGATATAGCAACTACGCACAAATG
Found at i:12953408 original size:40 final size:40
Alignment explanation
Indices: 12953333--12953560 Score: 268
Period size: 40 Copynumber: 5.6 Consensus size: 40
12953323 AACCCAAGTA
*
12953333 CCTTCGGGATTTAG-CCGGATATAGCAACTCA-CACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACT-AGCACAAATG
*
12953372 CCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
* *
12953412 CCTTCGAGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTA---GCACAAATG
12953455 CCTTCGGGACTTCA-CCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTT-AGCCCGGATATAG-CAACTAGCACAAATG
** *
12953495 CCTTTAGGACTTAGCCCGGATATAGGAACTACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTA---GCACAAATG
12953538 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
12953561 CATCCGAATA
Statistics
Matches: 163, Mismatches: 12, Indels: 24
0.82 0.06 0.12
Matches are distributed among these distances:
39 15 0.09
40 81 0.50
41 1 0.01
43 64 0.39
44 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
Found at i:12953453 original size:83 final size:83
Alignment explanation
Indices: 12953343--12953560 Score: 322
Period size: 83 Copynumber: 2.7 Consensus size: 83
12953333 CCTTCGGGAT
* *
12953343 TTAG-CCGGATATAGC-A--ACTCACACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAG
1 TTAGCCCGGATATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAG
12953404 CACAAATGCCTTCGA-GAC
66 CACAAATGCCTT-GAGGAC
*
12953422 TTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTCA-CCCGGATATAGTCACTA
1 TTAGCCCGGATATAGCAACTACTCGCACAAATGCCTTCGGGACTT-AGCCCGGATATAGTCACTA
*
12953486 GCACAAATGCCTTTAGGAC
65 GCACAAATGCCTTGAGGAC
* *
12953505 TTAGCCCGGATATAGGAACTACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 TTAGCCCGGATATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
12953561 CATCCGAATA
Statistics
Matches: 125, Mismatches: 7, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
79 4 0.03
80 10 0.08
81 1 0.01
82 2 0.02
83 107 0.86
84 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (83 bp):
TTAGCCCGGATATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAG
CACAAATGCCTTGAGGAC
Found at i:12958393 original size:29 final size:29
Alignment explanation
Indices: 12958329--12958402 Score: 78
Period size: 29 Copynumber: 2.6 Consensus size: 29
12958319 TAATCAACCA
* *
12958329 CGCACACTTATTGCCATGTCCTTTAAACT
1 CGCACACTTAGTGCCATGTCATTTAAACT
* **
12958358 CGTACACTTAGTGCCATG-CATTTCAAGTT
1 CGCACACTTAGTGCCATGTCATTT-AAACT
*
12958387 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
12958403 ATCTCACAAC
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
28 4 0.11
29 33 0.89
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGTCATTTAAACT
Found at i:12973275 original size:57 final size:58
Alignment explanation
Indices: 12973199--12973321 Score: 142
Period size: 57 Copynumber: 2.1 Consensus size: 58
12973189 TACCAATCTA
* * * * *
12973199 GGCTAAATCCTATCCATAGCATATGCTCTAGAGAGCTTA-ATATAG-ATTACTCGTCTG
1 GGCTAAATCCAATCCATAGCATAAGCTCAAGAGAGCTTACAT-TAGAATTACCCGTCCG
** * *
12973256 GGCTAAATCCAATTTATAGCCTAAGCTCAAGAGGGCTTACATTAGAATTACCCGTCCG
1 GGCTAAATCCAATCCATAGCATAAGCTCAAGAGAGCTTACATTAGAATTACCCGTCCG
12973314 GGCTAAAT
1 GGCTAAAT
12973322 TCTATCTGCA
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
57 35 0.64
58 20 0.36
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (58 bp):
GGCTAAATCCAATCCATAGCATAAGCTCAAGAGAGCTTACATTAGAATTACCCGTCCG
Found at i:12982806 original size:47 final size:47
Alignment explanation
Indices: 12982752--12982895 Score: 198
Period size: 47 Copynumber: 3.1 Consensus size: 47
12982742 GATTTTATGA
** * * *
12982752 GATGAATGTGAATGTGTATATATGAGATAAGGCCTAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
12982799 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* ** *
12982846 GATGAATGTGAACATGCATATGTGTGATAAGGTAGAATGGCTAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
12982893 GAT
1 GAT
12982896 AAACGTGGAA
Statistics
Matches: 88, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 88 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:12982825 original size:25 final size:25
Alignment explanation
Indices: 12982796--12982873 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
12982786 TAATGGCCAA
12982796 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCATATG
* *
12982821 TGTGAT-AAGGCCG-A-ATGGCCA-A--
1 TGTGATGAATG-TGAACAT-G-CATATG
12982843 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCATATG
12982868 TGTGAT
1 TGTGAT
12982874 AAGGTAGAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 9 0.22
23 8 0.20
24 8 0.20
25 15 0.38
ACGTcount: A:0.31, C:0.10, G:0.29, T:0.29
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGCATATG
Found at i:12984892 original size:17 final size:15
Alignment explanation
Indices: 12984859--12984901 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
12984849 TAGTTTATGC
12984859 TATTTTCTTAATATTT
1 TATTTT-TTAATATTT
12984875 TATTTTTTCAATATTTT
1 TATTTTTT-AATA-TTT
*
12984892 TAATTTTTAA
1 TATTTTTTAA
12984902 ATTATTTGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 2 0.08
16 12 0.50
17 10 0.42
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (15 bp):
TATTTTTTAATATTT
Found at i:12998057 original size:42 final size:41
Alignment explanation
Indices: 12998003--12998120 Score: 137
Period size: 43 Copynumber: 2.8 Consensus size: 41
12997993 TTAGGGTTAC
12998003 TGAGATTACGTGTAAGACCATATCTGGGATATGACATCGATA
1 TGAGATT-CGTGTAAGACCATATCTGGGATATGACATCGATA
* * * *
12998045 TGAGACTTCGTGTAAGACCATACCTAGGCTATTGGCATCGATA
1 TGAGA-TTCGTGTAAGACCATATCTGGGATA-TGACATCGATA
* * *
12998088 TGAGATCCCATGTAAGACTATATCTGGGATATG
1 TGAGAT-TCGTGTAAGACCATATCTGGGATATG
12998121 GCATTGGTGT
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
42 28 0.44
43 35 0.56
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.29
Consensus pattern (41 bp):
TGAGATTCGTGTAAGACCATATCTGGGATATGACATCGATA
Found at i:13001470 original size:27 final size:26
Alignment explanation
Indices: 13001413--13001475 Score: 72
Period size: 27 Copynumber: 2.4 Consensus size: 26
13001403 CCCCAATATT
* *
13001413 GGTAAAATTATCGAAATACCCTTTAG
1 GGTAAAATGATCGAAATACCCTATAG
* * *
13001439 TGTAAAATGATCGTAATGCCCCTATAG
1 GGTAAAATGATCGAAAT-ACCCTATAG
13001466 GGTAAAATGA
1 GGTAAAATGA
13001476 CCATAATACC
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 14 0.47
27 16 0.53
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (26 bp):
GGTAAAATGATCGAAATACCCTATAG
Found at i:13001482 original size:27 final size:27
Alignment explanation
Indices: 13001431--13001482 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
13001421 TATCGAAATA
* * * *
13001431 CCCTTTAGTGTAAAATGATCGTAATGC
1 CCCTATAGGGTAAAATGACCATAATGC
13001458 CCCTATAGGGTAAAATGACCATAAT
1 CCCTATAGGGTAAAATGACCATAAT
13001483 ACCCTTGTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (27 bp):
CCCTATAGGGTAAAATGACCATAATGC
Found at i:13001496 original size:27 final size:26
Alignment explanation
Indices: 13001427--13001503 Score: 66
Period size: 27 Copynumber: 2.9 Consensus size: 26
13001417 AAATTATCGA
* *
13001427 AATACCCTTT-AGTGTAAAATGATCGT
1 AATACCCTTTAAG-GTAAAATGACCAT
* * *
13001453 AATGCCCCTATAGGGTAAAATGACCAT
1 AAT-ACCCTTTAAGGTAAAATGACCAT
*
13001480 AATACCCTTGTAAGGTAGAATGAC
1 AATACCCTT-TAAGGTAAAATGAC
13001504 GATTATGCCC
Statistics
Matches: 39, Mismatches: 9, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
26 7 0.18
27 31 0.79
28 1 0.03
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.27
Consensus pattern (26 bp):
AATACCCTTTAAGGTAAAATGACCAT
Found at i:13001774 original size:22 final size:22
Alignment explanation
Indices: 13001746--13001844 Score: 135
Period size: 22 Copynumber: 4.5 Consensus size: 22
13001736 TACGGCCTTT
* *
13001746 AGCCGTCCTGTCTAAGGTGTTG
1 AGCCGTCCTGCCTACGGTGTTG
13001768 AGCCGTCCTGCCTACGGTGTTG
1 AGCCGTCCTGCCTACGGTGTTG
*
13001790 AACCGTCCTGCCTACGGTGTTG
1 AGCCGTCCTGCCTACGGTGTTG
* * *
13001812 AGCTGTCCTACCTACGGCGTTG
1 AGCCGTCCTGCCTACGGTGTTG
*
13001834 AGCTGTCCTGC
1 AGCCGTCCTGC
13001845 TGACTTAGTG
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 69 1.00
ACGTcount: A:0.12, C:0.30, G:0.29, T:0.28
Consensus pattern (22 bp):
AGCCGTCCTGCCTACGGTGTTG
Found at i:13010432 original size:25 final size:25
Alignment explanation
Indices: 13010403--13010512 Score: 120
Period size: 25 Copynumber: 4.4 Consensus size: 25
13010393 TATTGGTAAA
13010403 TATATGATACGTGATTCAATGGCAC
1 TATATGATACGTGATTCAATGGCAC
13010428 TATATGATACGTGATTCAATGGCAC
1 TATATGATACGTGATTCAATGGCAC
* * *
13010453 TATATGATCAATCTCTGATTCCA--GTAC
1 TATATGAT--A-C-GTGATTCAATGGCAC
13010480 TCAT-T-ATACGTGATTCAATGGCAC
1 T-ATATGATACGTGATTCAATGGCAC
13010504 TATATGATA
1 TATATGATA
13010513 TGCATGAAAT
Statistics
Matches: 70, Mismatches: 6, Indels: 18
0.74 0.06 0.19
Matches are distributed among these distances:
22 7 0.10
23 3 0.04
24 6 0.09
25 36 0.51
26 2 0.03
27 6 0.09
28 3 0.04
29 7 0.10
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Consensus pattern (25 bp):
TATATGATACGTGATTCAATGGCAC
Found at i:13011229 original size:116 final size:116
Alignment explanation
Indices: 13011014--13011242 Score: 361
Period size: 116 Copynumber: 2.0 Consensus size: 116
13011004 ATGCATACTA
* * *
13011014 CTATTTATGAAATTGTGTTGATATATAAATTTTGATATTTTTATGAAACTTATGTTTTAATTACT
1 CTATATATGAAATTGGGTTGATATATAAATTATGATATTTTTATGAAACTTATGTTTTAATTACT
* *
13011079 GGTTGTTACCTAAGTTAAGACTATGTAGAATTAAACTGTATAAATTCTCTG
66 AGTTGTTACCTAAGTTAAGACCATGTAGAATTAAACTGTATAAATTCTCTG
*
13011130 CTATATATGAAATTGGGTTGATATATAAATTATGATATTTTTATGAGA-TGTATGTTTTAATTAC
1 CTATATATGAAATTGGGTTGATATATAAATTATGATATTTTTATGAAACT-TATGTTTTAATTAC
* * *
13011194 TAGTTGTTATCTAAGTTAAGACCATGTGGAGTTAAACTGTATAAATTCT
65 TAGTTGTTACCTAAGTTAAGACCATGTAGAATTAAACTGTATAAATTCT
13011243 TTATAATATT
Statistics
Matches: 103, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
115 1 0.01
116 102 0.99
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.45
Consensus pattern (116 bp):
CTATATATGAAATTGGGTTGATATATAAATTATGATATTTTTATGAAACTTATGTTTTAATTACT
AGTTGTTACCTAAGTTAAGACCATGTAGAATTAAACTGTATAAATTCTCTG
Found at i:13017442 original size:3 final size:3
Alignment explanation
Indices: 13017434--13017512 Score: 61
Period size: 3 Copynumber: 25.7 Consensus size: 3
13017424 AAGGAAAGTT
* *
13017434 GAA GAA GAA GAA GAA GAA GAA GAA AAA GAAA GAA -AA AAA GAAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA G-AA GAA GAA GAA G-AA GAA
* * * * *
13017480 GGAA AAA GAA GAT GGA GAA GGA GAA GAG GAA GA
1 -GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
13017513 TATGGAAGAA
Statistics
Matches: 59, Mismatches: 13, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
2 2 0.03
3 48 0.81
4 9 0.15
ACGTcount: A:0.66, C:0.00, G:0.33, T:0.01
Consensus pattern (3 bp):
GAA
Found at i:13017477 original size:16 final size:17
Alignment explanation
Indices: 13017438--13017491 Score: 62
Period size: 16 Copynumber: 3.4 Consensus size: 17
13017428 AAAGTTGAAG
*
13017438 AAGAAG-AAG-AAGAAG
1 AAGAAGAAAGAAAGAAA
13017453 AAGAA-AAAGAAAGAAA
1 AAGAAGAAAGAAAGAAA
*
13017469 AA-AAGAAAGAAGGAAA
1 AAGAAGAAAGAAAGAAA
13017485 AAGAAGA
1 AAGAAGA
13017492 TGGAGAAGGA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
15 10 0.30
16 19 0.58
17 4 0.12
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (17 bp):
AAGAAGAAAGAAAGAAA
Found at i:13029042 original size:48 final size:48
Alignment explanation
Indices: 13028987--13029107 Score: 152
Period size: 48 Copynumber: 2.5 Consensus size: 48
13028977 ATATCCTGAT
*
13028987 ATGGTCTTACGTGGGATCAAATATCGATGCCAACACCATGTCCCAGAC
1 ATGGTCTTACATGGGATCAAATATCGATGCCAACACCATGTCCCAGAC
* ** * ** *
13029035 ATGGTCTTACACGGGATCGTAGATCGATGCCAATGCCATGTCCCAGAT
1 ATGGTCTTACATGGGATCAAATATCGATGCCAACACCATGTCCCAGAC
* *
13029083 ATAGTCTTACATGGGATCACATATC
1 ATGGTCTTACATGGGATCAAATATC
13029108 AATGTCGATA
Statistics
Matches: 60, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 60 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (48 bp):
ATGGTCTTACATGGGATCAAATATCGATGCCAACACCATGTCCCAGAC
Found at i:13035746 original size:48 final size:48
Alignment explanation
Indices: 13035680--13035816 Score: 159
Period size: 48 Copynumber: 2.9 Consensus size: 48
13035670 GGATACTAAT
* * * *
13035680 GCCATATCTCAGATATGGTCATACGTGGGATCACATATCGATGCCAAC
1 GCCATGTCTCAGACATGGTCTTACATGGGATCACATATCGATGCCAAC
* * ** * *
13035728 GCCATGTCCCAGACATGGTCTTACACGGGATCGTAGATCGATGCCAAT
1 GCCATGTCTCAGACATGGTCTTACATGGGATCACATATCGATGCCAAC
* *
13035776 ACCATGTCTCAGACATGGTCTTCCATGGGATCACAT-TCGAT
1 GCCATGTCTCAGACATGGTCTTACATGGGATCACATATCGAT
13035817 ACCGATAGCC
Statistics
Matches: 72, Mismatches: 17, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
47 5 0.07
48 67 0.93
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (48 bp):
GCCATGTCTCAGACATGGTCTTACATGGGATCACATATCGATGCCAAC
Found at i:13039027 original size:42 final size:42
Alignment explanation
Indices: 13038969--13039077 Score: 112
Period size: 43 Copynumber: 2.6 Consensus size: 42
13038959 TCGGTGTCTC
* * *
13038969 TGTCCCAAACAGGGTCTTACACGAAATC-AAATACGATGCCGA
1 TGTCCCAGACACGGTCTTACACGAAATCTAAAT-CGAGGCCGA
* * * * * *
13039011 TGTCCCAGACATGGTCTTATACATAAATCTCAATTGAGGCCTA
1 TGTCCCAGACACGGTCTTACAC-GAAATCTAAATCGAGGCCGA
13039054 TGTCCCAGACACGGTCTTACACGA
1 TGTCCCAGACACGGTCTTACACGA
13039078 TGTCCTAGAC
Statistics
Matches: 54, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
42 20 0.37
43 31 0.57
44 3 0.06
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (42 bp):
TGTCCCAGACACGGTCTTACACGAAATCTAAATCGAGGCCGA
Found at i:13056829 original size:24 final size:24
Alignment explanation
Indices: 13056779--13056832 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
13056769 AATCGAATTT
*
13056779 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
13056803 GCACACATAGTGCCATAG-CACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
13056827 GCACAC
1 GCACAC
13056833 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 6 0.22
26 2 0.07
ACGTcount: A:0.30, C:0.39, G:0.17, T:0.15
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:13058512 original size:19 final size:19
Alignment explanation
Indices: 13058488--13058540 Score: 81
Period size: 19 Copynumber: 2.8 Consensus size: 19
13058478 GTCACACTAA
13058488 AGACACGGGCGTGTCAAAG
1 AGACACGGGCGTGTCAAAG
*
13058507 AGACACAGGCGTGTCAAAG
1 AGACACGGGCGTGTCAAAG
13058526 -GCACACGGGCGTGTC
1 AG-ACACGGGCGTGTC
13058541 CCTGTGTCCA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
18 1 0.03
19 30 0.97
ACGTcount: A:0.28, C:0.25, G:0.36, T:0.11
Consensus pattern (19 bp):
AGACACGGGCGTGTCAAAG
Found at i:13059385 original size:16 final size:16
Alignment explanation
Indices: 13059361--13059394 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
13059351 AAGTCCATCA
*
13059361 AACCCTAGAGTTCGCC
1 AACCCTAGAGTTCACC
*
13059377 AACCTTAGAGTTCACC
1 AACCCTAGAGTTCACC
13059393 AA
1 AA
13059395 ATGGAAAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.32, C:0.32, G:0.15, T:0.21
Consensus pattern (16 bp):
AACCCTAGAGTTCACC
Found at i:13070804 original size:22 final size:22
Alignment explanation
Indices: 13070779--13070827 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 22
13070769 ATTTTATGCT
13070779 AATTGATAA-AGAT-TAATATATA
1 AATT-ATAATAGATATAAT-TATA
13070801 AATTATAATAGATATAATTATA
1 AATTATAATAGATATAATTATA
13070823 AATTA
1 AATTA
13070828 AAGATCTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.16
22 17 0.68
23 4 0.16
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (22 bp):
AATTATAATAGATATAATTATA
Found at i:13084930 original size:112 final size:112
Alignment explanation
Indices: 13084738--13084963 Score: 346
Period size: 112 Copynumber: 2.0 Consensus size: 112
13084728 TGAATAGAAC
13084738 CCGAAATAAGAATTAGTTAAAGCCACGAAAGCGAGTTAATCTTCCGTCCTTAGAATTGGTAAAAT
1 CCGAAATAAGAATTAGTTAAAGCCACGAAAGCGAGTTAATCTTCCGTCCTTAGAATTGGTAAAAT
* ** * *
13084803 CTACAAGTTAGTTTTATGTCTTTATTTTTCTAAAGTATGAATTTTCA
66 CTAAAAAATACTTTTATGTCTTTATTTTACTAAAGTATGAATTTTCA
* * * **
13084850 CCGAAATAATAATTAGTTACAGCCACCG-AAGCGAGTTAGTCTTTTGTCCTTAGAATTGGTAAAA
1 CCGAAATAAGAATTAGTTAAAGCCA-CGAAAGCGAGTTAATCTTCCGTCCTTAGAATTGGTAAAA
13084914 TCTAAAAAATACTTTTATGTCTTTATTTTACTAAAGTATGAATTTTCA
65 TCTAAAAAATACTTTTATGTCTTTATTTTACTAAAGTATGAATTTTCA
13084962 CC
1 CC
13084964 ATCCTAAGAT
Statistics
Matches: 103, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
112 101 0.98
113 2 0.02
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (112 bp):
CCGAAATAAGAATTAGTTAAAGCCACGAAAGCGAGTTAATCTTCCGTCCTTAGAATTGGTAAAAT
CTAAAAAATACTTTTATGTCTTTATTTTACTAAAGTATGAATTTTCA
Found at i:13088363 original size:48 final size:48
Alignment explanation
Indices: 13088301--13088434 Score: 187
Period size: 48 Copynumber: 2.8 Consensus size: 48
13088291 TTATTTATCA
* * * *
13088301 TGTAGGTTTCACCCTGACGGGTAACGAAGTACTATTATTCATTATTCG
1 TGTAGGTTTAACCCTAACGGGTAACGAAGCACTATTATTCATCATTCG
*
13088349 TGTAGGTTTAACCCTAACAGGTAACGAAGCACTATTATTCATCATTCG
1 TGTAGGTTTAACCCTAACGGGTAACGAAGCACTATTATTCATCATTCG
* * *
13088397 TGTAGGTTTTAACCCAAACGGGTAACTAGGCACTATTA
1 TGTAGG-TTTAACCCTAACGGGTAACGAAGCACTATTA
13088435 CTTTCACCTA
Statistics
Matches: 76, Mismatches: 9, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
48 49 0.64
49 27 0.36
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.32
Consensus pattern (48 bp):
TGTAGGTTTAACCCTAACGGGTAACGAAGCACTATTATTCATCATTCG
Found at i:13090736 original size:27 final size:26
Alignment explanation
Indices: 13090698--13090806 Score: 119
Period size: 27 Copynumber: 4.0 Consensus size: 26
13090688 AAGCGTCCTA
*
13090698 GTGGCTATGCCACAATTATCTGATCTG
1 GTGGCTCTGCCAC-ATTATCTGATCTG
*
13090725 GTGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTCTGCCACAT-TATCTGATCTG
* *
13090752 GTAGCTCTGCCACGATTATCTGTATCTA
1 GTGGCTCTGCCAC-ATTATCTG-ATCTG
* * *
13090780 GTGACTCTGTCACATTATCTGTTCTG
1 GTGGCTCTGCCACATTATCTGATCTG
13090806 G
1 G
13090807 CAGCCATGCT
Statistics
Matches: 69, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 6 0.09
27 48 0.70
28 15 0.22
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (26 bp):
GTGGCTCTGCCACATTATCTGATCTG
Found at i:13097438 original size:20 final size:21
Alignment explanation
Indices: 13097413--13097453 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
13097403 GAATACTACC
13097413 TCTTCTATCATC-CTTTTCCT
1 TCTTCTATCATCTCTTTTCCT
*
13097433 TCTTCTATCTTCTCTTTTCCT
1 TCTTCTATCATCTCTTTTCCT
13097454 CATAATCGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.07, C:0.34, G:0.00, T:0.59
Consensus pattern (21 bp):
TCTTCTATCATCTCTTTTCCT
Found at i:13099853 original size:39 final size:39
Alignment explanation
Indices: 13099799--13100028 Score: 343
Period size: 39 Copynumber: 5.9 Consensus size: 39
13099789 TATCAGTACA
* *
13099799 AAGCCTGCGGGACTTTAACCAGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* *
13099838 AAGCCTGCGGGACTTTGGCCCGGATATATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
13099877 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCATG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* * *
13099916 AAGCTTGCGGAACTTTAGCCCGGATATATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
13099955 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* ** *
13099994 AAGCCTGCGGGACTTTGGCTTGGATATATTTCCAG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAG
13100029 TGTCTTGCAT
Statistics
Matches: 173, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 173 1.00
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (39 bp):
AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
Found at i:13099913 original size:78 final size:78
Alignment explanation
Indices: 13099799--13100028 Score: 379
Period size: 78 Copynumber: 2.9 Consensus size: 78
13099789 TATCAGTACA
* *
13099799 AAGCCTGCGGGACTTTAACCAGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGCCCGGATA
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGCCCGGATA
13099864 TATTTCCAGCACG
66 TATTTCCAGCACG
* * * *
13099877 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCATGAAGCTTGCGGAACTTTAGCCCGGATA
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGCCCGGATA
13099942 TATTTCCAGCACG
66 TATTTCCAGCACG
* **
13099955 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGCTTGGATA
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGCCCGGATA
13100020 TATTTCCAG
66 TATTTCCAG
13100029 TGTCTTGCAT
Statistics
Matches: 139, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
78 139 1.00
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (78 bp):
AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGCCCGGATA
TATTTCCAGCACG
Found at i:13105650 original size:38 final size:39
Alignment explanation
Indices: 13105596--13105753 Score: 246
Period size: 39 Copynumber: 4.1 Consensus size: 39
13105586 ATTATATTAT
*
13105596 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
13105635 CAGCACGAAG-CTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
13105673 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
13105712 CAGCACAAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTC
13105751 CAG
1 CAG
13105754 TGTCTTGCAT
Statistics
Matches: 109, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
38 35 0.32
39 74 0.68
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (39 bp):
CAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:13105715 original size:77 final size:78
Alignment explanation
Indices: 13105588--13105753 Score: 282
Period size: 77 Copynumber: 2.1 Consensus size: 78
13105578 AACCCGAAAT
*
13105588 TATATTAT-CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAG-CTGCGG
1 TATATT-TCCAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACAAAGCCTGCGG
13105651 GACTTTGGCCCGGA
65 GACTTTGGCCCGGA
* *
13105665 TATATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGG
1 TATATTTCCAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACAAAGCCTGCGGG
13105730 ACTTTGGCCCGGA
66 ACTTTGGCCCGGA
13105743 TATATTTCCAG
1 TATATTTCCAG
13105754 TGTCTTGCAT
Statistics
Matches: 84, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
76 1 0.01
77 52 0.62
78 31 0.37
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (78 bp):
TATATTTCCAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACAAAGCCTGCGGG
ACTTTGGCCCGGA
Found at i:13108101 original size:27 final size:26
Alignment explanation
Indices: 13108061--13108172 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
13108051 AGGAAGTGTC
* *
13108061 CTGGTGGCTATGCCACAATTATTTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
13108088 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
13108115 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* ** *
13108143 CTGGTGACTCTATCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
13108169 CTGG
1 CTGG
13108173 CATCCATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 7 0.09
27 51 0.69
28 16 0.22
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:13108165 original size:54 final size:54
Alignment explanation
Indices: 13108061--13108172 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
13108051 AGGAAGTGTC
* * *
13108061 CTGGTGGCTATGCCACAATTATTTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTGTT
* * *
13108115 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTATCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTACCACATATATCTGTT
13108169 CTGG
1 CTGG
13108173 CATCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTGTT
Found at i:13112970 original size:47 final size:47
Alignment explanation
Indices: 13112858--13112980 Score: 126
Period size: 47 Copynumber: 2.6 Consensus size: 47
13112848 TCACTTGTGT
* * **
13112858 GAGCTAGTGTAAGACATGTCTGGGACAT-GCACCGGCCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCACCAGCCACAAAATGA
* *
13112904 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGAGAAAT-A
1 GAGCCAGTGTAAGA-CATGTCTGGGACATGGCACCAGCCAC-A-AAATGA
* *
13112953 -AGCCAGTGTAAGACATGTTTAGGACATG
1 GAGCCAGTGTAAGACATGTCTGGGACATG
13112981 CAATCGTTAC
Statistics
Matches: 65, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
46 13 0.20
47 27 0.42
48 21 0.32
49 2 0.03
50 2 0.03
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.21
Consensus pattern (47 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGGCACCAGCCACAAAATGA
Found at i:13123890 original size:20 final size:20
Alignment explanation
Indices: 13123824--13123890 Score: 80
Period size: 20 Copynumber: 3.4 Consensus size: 20
13123814 ATTTTAGTAA
*
13123824 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
13123844 ACATGACATGTATGCTATGC
1 ACATGATATGTATGATATGC
* *
13123864 ACGTGATATGTATTATATGC
1 ACATGATATGTATGATATGC
*
13123884 TCATGAT
1 ACATGAT
13123891 GTATTCATAA
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:13124061 original size:24 final size:23
Alignment explanation
Indices: 13123941--13124059 Score: 211
Period size: 23 Copynumber: 5.1 Consensus size: 23
13123931 AGGAAGTGCA
13123941 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
13123964 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
13123987 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
13124010 AAAGGGCTTATGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
13124033 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
13124057 AAA
1 AAA
13124060 AGAGGCTAGG
Statistics
Matches: 92, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
23 71 0.77
24 21 0.23
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:13124307 original size:31 final size:31
Alignment explanation
Indices: 13124272--13124331 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
13124262 CGTTTACAGT
*
13124272 AAAGGCTTCGGTCCAGTAATATGAAATATAA
1 AAAGGCTTCGGGCCAGTAATATGAAATATAA
**
13124303 AAAGGCTTCGGGCCAGTGTTATGAAATAT
1 AAAGGCTTCGGGCCAGTAATATGAAATAT
13124332 GAAATATGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGGCCAGTAATATGAAATATAA
Found at i:13125858 original size:46 final size:44
Alignment explanation
Indices: 13125758--13125858 Score: 103
Period size: 46 Copynumber: 2.2 Consensus size: 44
13125748 GTAACCCGCC
* * *
13125758 CCTAAGTGAACTCGAACTCAACTCAAAGAGCTCGGGCGTTCGCAT
1 CCTAA-TGAACTCGAACTCAACTCAAAGAGCTCGGACGCTCCCAT
* * *
13125803 CCATAAATGAACTCGAACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 CC-T-AATGAACTCGAACTCAACTCAAAGAGCTCGGACGCTC--CCAT
13125851 CCTAATGA
1 CCTAATGA
13125859 CTTGTCACTT
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
45 2 0.04
46 36 0.78
47 3 0.07
48 5 0.11
ACGTcount: A:0.33, C:0.29, G:0.18, T:0.21
Consensus pattern (44 bp):
CCTAATGAACTCGAACTCAACTCAAAGAGCTCGGACGCTCCCAT
Found at i:13132981 original size:19 final size:20
Alignment explanation
Indices: 13132957--13132994 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
13132947 GGTACCACCA
13132957 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
13132976 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
13132995 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:13133338 original size:92 final size:93
Alignment explanation
Indices: 13133224--13133393 Score: 288
Period size: 92 Copynumber: 1.8 Consensus size: 93
13133214 GCCCCTAAGT
* *
13133224 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
13133289 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
13133317 GAACTC-GACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
13133381 CGAGTTCGGATGC
66 CGAGTTCGGATGC
13133394 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 66 0.92
93 6 0.08
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:13133390 original size:46 final size:46
Alignment explanation
Indices: 13133219--13133390 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
13133209 AACCCGCCCC
* * * *
13133219 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
13133265 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
13133313 TCA-CGAACTC-GACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
13133357 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
13133391 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
42 6 0.06
43 2 0.02
44 2 0.02
45 6 0.06
46 75 0.71
47 6 0.06
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:13137660 original size:94 final size:94
Alignment explanation
Indices: 13137480--13137664 Score: 262
Period size: 94 Copynumber: 2.0 Consensus size: 94
13137470 TGTGTTTTTT
* * * ** * *
13137480 GACCCACACGGCCTGGACACACAGGCGTGTGCCAGGTTGTGTGCATAATAAGGGGTTCAACAGTG
1 GACCCACACGGCCTGGACACACAGGCATGTCCCAAGTCATGTGCACAATAAAGGGTTCAACAGTG
* *
13137545 AGTTACATGGCTTGGCGACATGGCCATGC
66 AGTTACATGGCCTGGCAACATGGCCATGC
* * *
13137574 GACCTACATGGCCTGGACACACAGGCATGTCCCAAGTCATGTGCACAATAAAGGGTTCGACAGTG
1 GACCCACACGGCCTGGACACACAGGCATGTCCCAAGTCATGTGCACAATAAAGGGTTCAACAGTG
13137639 AGTTACATGGCCTGGCAACATGGCCA
66 AGTTACATGGCCTGGCAACATGGCCA
13137665 CATGACCTAC
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
94 79 1.00
ACGTcount: A:0.26, C:0.25, G:0.29, T:0.19
Consensus pattern (94 bp):
GACCCACACGGCCTGGACACACAGGCATGTCCCAAGTCATGTGCACAATAAAGGGTTCAACAGTG
AGTTACATGGCCTGGCAACATGGCCATGC
Found at i:13137672 original size:94 final size:94
Alignment explanation
Indices: 13137479--13137689 Score: 260
Period size: 94 Copynumber: 2.2 Consensus size: 94
13137469 ATGTGTTTTT
* * * * ** * *
13137479 TGACCCACACGGCCTGGACACACAGGCGTGTGCCAGGTTGTGTGCATAATAAGGGGTTCAACAGT
1 TGACCTACACGGCCTGGACACACAGGCATGTCCCAAGTCATGTGCACAATAAAGGGTTCAACAGT
* * **
13137544 GAGTTACATGGCTTGGCGACATGGCCATG
66 GAGTTACATGGCCTGGCAACATGGCCACA
* * *
13137573 CGACCTACATGGCCTGGACACACAGGCATGTCCCAAGTCATGTGCACAATAAAGGGTTCGACAGT
1 TGACCTACACGGCCTGGACACACAGGCATGTCCCAAGTCATGTGCACAATAAAGGGTTCAACAGT
13137638 GAGTTACATGGCCTGGCAACATGGCCACA
66 GAGTTACATGGCCTGGCAACATGGCCACA
* * *
13137667 TGACCTACTCGACCTAGACACAC
1 TGACCTACACGGCCTGGACACAC
13137690 GGGCGTGGCA
Statistics
Matches: 97, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
94 97 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.19
Consensus pattern (94 bp):
TGACCTACACGGCCTGGACACACAGGCATGTCCCAAGTCATGTGCACAATAAAGGGTTCAACAGT
GAGTTACATGGCCTGGCAACATGGCCACA
Found at i:13138085 original size:13 final size:13
Alignment explanation
Indices: 13138067--13138093 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
13138057 GAAGTAATCG
13138067 CACACGGGCGTGT
1 CACACGGGCGTGT
13138080 CACACGGGCGTGT
1 CACACGGGCGTGT
13138093 C
1 C
13138094 CCTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:13144217 original size:31 final size:30
Alignment explanation
Indices: 13144143--13144226 Score: 111
Period size: 29 Copynumber: 2.8 Consensus size: 30
13144133 AATCAGTCTC
13144143 AACATATACTGGGCCGAAGCC-TTTCATTA
1 AACATATACTGGGCCGAAGCCTTTTCATTA
13144172 AACGAT-TACTGGGCCGAAGCCTTTTCA-TA
1 AAC-ATATACTGGGCCGAAGCCTTTTCATTA
*
13144201 ATTCATATCACTGGGCCGAAGCCTTT
1 A-ACATAT-ACTGGGCCGAAGCCTTT
13144227 ACTGTAGACG
Statistics
Matches: 49, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
29 23 0.47
30 9 0.18
31 17 0.35
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (30 bp):
AACATATACTGGGCCGAAGCCTTTTCATTA
Found at i:13144495 original size:25 final size:25
Alignment explanation
Indices: 13144461--13144508 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
13144451 GGCAAAGCCC
*
13144461 TAAATTGGGGCAAAGCCATTTTCGG
1 TAAACTGGGGCAAAGCCATTTTCGG
*
13144486 TAAACTGGGGCAAAGCCCTTTTC
1 TAAACTGGGGCAAAGCCATTTTC
13144509 CACTTCCTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (25 bp):
TAAACTGGGGCAAAGCCATTTTCGG
Found at i:13144581 original size:20 final size:21
Alignment explanation
Indices: 13144556--13144603 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
13144546 AAATGAATAC
*
13144556 ATCATGTGCATATCATA-CAT
1 ATCATGTGCATATCATATCAA
13144576 ATCATGTGCATATCATATCAA
1 ATCATGTGCATATCATATCAA
13144597 ATCATGT
1 ATCATGT
13144604 ATATCAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.35
Consensus pattern (21 bp):
ATCATGTGCATATCATATCAA
Found at i:13152458 original size:20 final size:21
Alignment explanation
Indices: 13152433--13152480 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
13152423 AAATGAATAC
*
13152433 ATCATGTGCATATCATA-CAT
1 ATCATGTGCATATCATATCAA
13152453 ATCATGTGCATATCATATCAA
1 ATCATGTGCATATCATATCAA
13152474 ATCATGT
1 ATCATGT
13152481 ATATCAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.35
Consensus pattern (21 bp):
ATCATGTGCATATCATATCAA
Found at i:13159243 original size:12 final size:11
Alignment explanation
Indices: 13159226--13159323 Score: 85
Period size: 12 Copynumber: 8.7 Consensus size: 11
13159216 TTTTTCTTTG
13159226 TATATTATTTA
1 TATATTATTTA
13159237 TTATATTATTTA
1 -TATATTATTTA
*
13159249 TATTATTATATA
1 TA-TATTATTTA
*
13159261 TTATATTACTTA
1 -TATATTATTTA
* *
13159273 CAT-TTA-ATA
1 TATATTATTTA
13159282 TATATT-TTTA
1 TATATTATTTA
*
13159292 TATATTACTTA
1 TATATTATTTA
13159303 TCATATTATTTA
1 T-ATATTATTTA
13159315 TATTATTAT
1 TA-TATTAT
13159324 ATATTGTGTT
Statistics
Matches: 70, Mismatches: 9, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
9 4 0.06
10 13 0.19
11 9 0.13
12 42 0.60
13 2 0.03
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (11 bp):
TATATTATTTA
Found at i:13171639 original size:44 final size:44
Alignment explanation
Indices: 13171582--13171809 Score: 366
Period size: 44 Copynumber: 5.2 Consensus size: 44
13171572 GATCCAAGAT
* *
13171582 GATTTGGAATCTCTATATTGTCAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* *
13171626 GATTTGGCATCTCTGTATTATCAGAGAGCAGATTGAAGATAGCA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
13171670 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* *
13171714 GATTTGGCATCTCTGTATTGTCAAAGAGTAGATCGAAGATAGCA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* * * *
13171758 GATTTGGCATCTCTATATTGTCAGAGAGTAGATCGGAGATAACA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
13171802 GATTTGGC
1 GATTTGGC
13171810 GTTCGTGAGT
Statistics
Matches: 172, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 172 1.00
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (44 bp):
GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
Found at i:13171840 original size:88 final size:89
Alignment explanation
Indices: 13171582--13171844 Score: 337
Period size: 88 Copynumber: 3.0 Consensus size: 89
13171572 GATCCAAGAT
*
13171582 GATTTGGAATCTCTATATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTA-TTA
1 GATTTGGCATCTCTATATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTG-AGTT-
13171646 T-C-AGAGAGCAGATTGAAGATAGCA
64 TGCAAGAGAGCAGATTGAAGATAGCA
*
13171670 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCT--GTATT
1 GATTTGGCATCTCTATATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGAGT-TT
* *
13171733 GTCAA-AGAGTAGATCGAAGATAGCA
65 G-CAAGAGAGCAGATTGAAGATAGCA
* * * *
13171758 GATTTGGCATCTCTATATTGTCAGAGAGTAGATCGGAGATAACAGATTTGGCGT-TCGTGAGTTT
1 GATTTGGCATCTCTATATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTC-TGAGTTT
13171822 GCAAGA-AGCA-AGTTGAAGATAGC
65 GCAAGAGAGCAGA-TTGAAGATAGC
13171845 TAGTTTGACA
Statistics
Matches: 154, Mismatches: 11, Indels: 20
0.83 0.06 0.11
Matches are distributed among these distances:
86 2 0.01
87 4 0.03
88 141 0.92
89 5 0.03
90 2 0.01
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.29
Consensus pattern (89 bp):
GATTTGGCATCTCTATATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGAGTTTG
CAAGAGAGCAGATTGAAGATAGCA
Found at i:13173360 original size:12 final size:12
Alignment explanation
Indices: 13173343--13173414 Score: 83
Period size: 12 Copynumber: 5.8 Consensus size: 12
13173333 TTTTTCTTTG
13173343 TATATTATTTAT
1 TATATTATTTAT
13173355 TATATTATTTAT
1 TATATTATTTAT
13173367 ATATTATTATTTAT
1 -TA-TATTATTTAT
*
13173381 TATATTACTTACAT
1 TATATTA-TT-TAT
13173395 TATATT-TTTAT
1 TATATTATTTAT
*
13173406 TTTATTATT
1 TATATTATT
13173415 AAATAAATAT
Statistics
Matches: 52, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
11 7 0.13
12 21 0.40
13 6 0.12
14 18 0.35
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (12 bp):
TATATTATTTAT
Found at i:13173374 original size:26 final size:26
Alignment explanation
Indices: 13173343--13173414 Score: 94
Period size: 26 Copynumber: 2.8 Consensus size: 26
13173333 TTTTTCTTTG
*
13173343 TATATTATTTATTATATTATTTATA-
1 TATATTATTTATTATATTATTTACAT
*
13173368 TATTATTATTTATTATATTACTTACAT
1 TA-TATTATTTATTATATTATTTACAT
*
13173395 TATATT-TTTATTTTATTATT
1 TATATTATTTATTATATTATT
13173415 AAATAAATAT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
25 14 0.34
26 25 0.61
27 2 0.05
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (26 bp):
TATATTATTTATTATATTATTTACAT
Found at i:13176567 original size:25 final size:25
Alignment explanation
Indices: 13176539--13176587 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
13176529 CCAGAGGACC
* *
13176539 AATCATATAACTCATGATAATGATT
1 AATCACATAACTCATCATAATGATT
* *
13176564 AATCACATAATTCTTCATAATGAT
1 AATCACATAACTCATCATAATGAT
13176588 AATAATTAGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.43, C:0.14, G:0.06, T:0.37
Consensus pattern (25 bp):
AATCACATAACTCATCATAATGATT
Found at i:13188297 original size:38 final size:38
Alignment explanation
Indices: 13188255--13188331 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
13188245 TTCATTGTTC
13188255 TTGAGTTATCTGATTATGATTTTGTTAATGTAGAACTA
1 TTGAGTTATCTGATTATGATTTTGTTAATGTAGAACTA
13188293 TTGAGTTATCTGATTATGATTTTGTTAATGTAGAACTA
1 TTGAGTTATCTGATTATGATTTTGTTAATGTAGAACTA
13188331 T
1 T
13188332 GGATTGCATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.29, C:0.05, G:0.18, T:0.48
Consensus pattern (38 bp):
TTGAGTTATCTGATTATGATTTTGTTAATGTAGAACTA
Done.