Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 46 of 250
Found at i:14442895 original size:66 final size:66
Alignment explanation
Indices: 14442821--14442947 Score: 166
Period size: 66 Copynumber: 1.9 Consensus size: 66
14442811 CATTTCTGCC
* * *
14442821 TGTATCCACCGCCATACTCCACTCCTCCTGACCTGTATCCACTGC-CATACTCTACTCCTCCTGA
1 TGTATCCACCGCCATACTCCACTCCTCCCGACCCGTATCCACTGCTC-TACTCCACTCCTCCTGA
14442885 CT
65 CT
** * * *
14442887 TGTATCCACCGCTGTACTCTATTCCTCCCGGCCCGTATCCACTGCTCTACTCCACTCCTCC
1 TGTATCCACCGCCATACTCCACTCCTCCCGACCCGTATCCACTGCTCTACTCCACTCCTCC
14442948 CGGCTCAAGT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
66 51 0.98
67 1 0.02
ACGTcount: A:0.16, C:0.45, G:0.10, T:0.29
Consensus pattern (66 bp):
TGTATCCACCGCCATACTCCACTCCTCCCGACCCGTATCCACTGCTCTACTCCACTCCTCCTGAC
T
Found at i:14449209 original size:24 final size:23
Alignment explanation
Indices: 14449140--14449216 Score: 75
Period size: 24 Copynumber: 3.3 Consensus size: 23
14449130 AAAATATAAC
* * *
14449140 ATATAATAAAATTTATA-AAGAC
1 ATATAATAATATTTATATAATAT
* * *
14449162 ATATAACAATATATATTATTATAT
1 ATATAATAATATTTA-TATAATAT
14449186 ATATAATAACTATTTATATAATAT
1 ATATAATAA-TATTTATATAATAT
14449210 ATATAAT
1 ATATAAT
14449217 TCTTAAAATT
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
22 12 0.28
23 2 0.05
24 24 0.56
25 5 0.12
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (23 bp):
ATATAATAATATTTATATAATAT
Found at i:14454161 original size:11 final size:10
Alignment explanation
Indices: 14454145--14454182 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
14454135 TTTAGTTTAA
14454145 TTAATTAAAGG
1 TTAATT-AAGG
14454156 TTAATTAA-G
1 TTAATTAAGG
*
14454165 TTAATTAAGA
1 TTAATTAAGG
14454175 TTAATTAA
1 TTAATTAA
14454183 AAGTTAAACT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
9 9 0.36
10 10 0.40
11 6 0.24
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (10 bp):
TTAATTAAGG
Found at i:14454163 original size:19 final size:19
Alignment explanation
Indices: 14454141--14454182 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
14454131 TATGTTTAGT
*
14454141 TTAA-TTAATTAAAGGTTAA
1 TTAAGTTAATT-AAGATTAA
14454160 TTAAGTTAATTAAGATTAA
1 TTAAGTTAATTAAGATTAA
14454179 TTAA
1 TTAA
14454183 AAGTTAAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.43
Consensus pattern (19 bp):
TTAAGTTAATTAAGATTAA
Found at i:14466234 original size:9 final size:9
Alignment explanation
Indices: 14466208--14466254 Score: 51
Period size: 9 Copynumber: 5.3 Consensus size: 9
14466198 ATACAGAAAT
*
14466208 AAAGTTTAA
1 AAAGTCTAA
14466217 AAA-TCTAA
1 AAAGTCTAA
*
14466225 ACAGTCTAA
1 AAAGTCTAA
14466234 AAAGTCTAA
1 AAAGTCTAA
* *
14466243 AGAGTCCAA
1 AAAGTCTAA
14466252 AAA
1 AAA
14466255 TTTACAGAAC
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
8 6 0.19
9 25 0.81
ACGTcount: A:0.55, C:0.13, G:0.11, T:0.21
Consensus pattern (9 bp):
AAAGTCTAA
Found at i:14466241 original size:18 final size:17
Alignment explanation
Indices: 14466214--14466255 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
14466204 AAATAAAGTT
14466214 TAAAAATCTAAACAGTC
1 TAAAAATCTAAACAGTC
*
14466231 TAAAAAGTCTAAAGAGTC
1 TAAAAA-TCTAAACAGTC
*
14466249 CAAAAAT
1 TAAAAAT
14466256 TTACAGAACC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.55, C:0.14, G:0.10, T:0.21
Consensus pattern (17 bp):
TAAAAATCTAAACAGTC
Found at i:14467449 original size:21 final size:22
Alignment explanation
Indices: 14467398--14467449 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 22
14467388 GGCTAGAAGG
*
14467398 AGAACAAAATTGAATTGAAGAA
1 AGAACAAAATTAAATTGAAGAA
*
14467420 A-AACCAAATTAAATTGAA-AA
1 AGAACAAAATTAAATTGAAGAA
*
14467440 AGAAAAAAAT
1 AGAACAAAAT
14467450 AGATTGCACA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 3 0.12
21 21 0.84
22 1 0.04
ACGTcount: A:0.65, C:0.06, G:0.12, T:0.17
Consensus pattern (22 bp):
AGAACAAAATTAAATTGAAGAA
Found at i:14470293 original size:15 final size:16
Alignment explanation
Indices: 14470273--14470303 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14470263 TATAACTTTG
14470273 ACAAAT-AAAATAAAA
1 ACAAATAAAAATAAAA
14470288 ACAAATAAAAATAAAA
1 ACAAATAAAAATAAAA
14470304 TAGAGTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.81, C:0.06, G:0.00, T:0.13
Consensus pattern (16 bp):
ACAAATAAAAATAAAA
Found at i:14473641 original size:32 final size:30
Alignment explanation
Indices: 14473605--14473676 Score: 72
Period size: 32 Copynumber: 2.3 Consensus size: 30
14473595 AACATGTAAG
* * *
14473605 AATAAAAAAAAAGAAAAAATTTTGAATTAAAA
1 AATAAAAAAAAA-AAAAAATATTAAAAT-AAA
* *
14473637 AATAAATTAAAAACAAAAATATTAAAATAAA
1 AATAAA-AAAAAAAAAAAATATTAAAATAAA
14473668 AATAAAAAA
1 AATAAAAAA
14473677 TGGCTAAATT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
30 2 0.06
31 9 0.27
32 17 0.52
33 5 0.15
ACGTcount: A:0.75, C:0.01, G:0.03, T:0.21
Consensus pattern (30 bp):
AATAAAAAAAAAAAAAAATATTAAAATAAA
Found at i:14484234 original size:129 final size:129
Alignment explanation
Indices: 14484004--14484256 Score: 425
Period size: 129 Copynumber: 2.0 Consensus size: 129
14483994 TCATTGTAAG
* *
14484004 AATACGAGGAATACAGGTTGTAAGGATCATTTGTCGAGTAACCACCTTCCCATCCTTTCTTGTCA
1 AATACGAGGAATACAGGTCGTAAGGATCATTTGTCGAGTAACCACCTTCCCATCCTTTCTTCTCA
14484069 CTCTCTACCAGACCGGCATAACTATACGAATTATAACAAGGATCATATCATTGTCTCCCATAAC
66 CTCTCTACCAGACCGGCATAACTATACGAATTATAACAAGGATCATATCATTGTCTCCCATAAC
* * * *
14484133 AATACGAGGAATACGGGTCGTAAGGTTCATTTGTCGGGTAACCACCTTCCCATCCTTTCTTCTCG
1 AATACGAGGAATACAGGTCGTAAGGATCATTTGTCGAGTAACCACCTTCCCATCCTTTCTTCTCA
* * *
14484198 CTCTCTACCAGATCGGTATAACTATACGAATTATAACAAGGATCATATCGTTGTCTCCC
66 CTCTCTACCAGACCGGCATAACTATACGAATTATAACAAGGATCATATCATTGTCTCCC
14484257 GTAAGGGCCA
Statistics
Matches: 115, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
129 115 1.00
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (129 bp):
AATACGAGGAATACAGGTCGTAAGGATCATTTGTCGAGTAACCACCTTCCCATCCTTTCTTCTCA
CTCTCTACCAGACCGGCATAACTATACGAATTATAACAAGGATCATATCATTGTCTCCCATAAC
Found at i:14488575 original size:26 final size:26
Alignment explanation
Indices: 14488546--14488597 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
14488536 GACATAGGCT
14488546 TTACACACTCTTACATAGCTAGTATA
1 TTACACACTCTTACATAGCTAGTATA
14488572 TTACACACTCTTACATAGCTAGTATA
1 TTACACACTCTTACATAGCTAGTATA
14488598 GTGTCTGAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.23, G:0.08, T:0.35
Consensus pattern (26 bp):
TTACACACTCTTACATAGCTAGTATA
Found at i:14497305 original size:25 final size:25
Alignment explanation
Indices: 14497276--14497329 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
14497266 CACTATAAAT
* * *
14497276 GCTTTCCAAATATTTCTTCACAAAG
1 GCTTTACAAAGATTTCGTCACAAAG
* *
14497301 GCTTTACAGAGATTTCGTCCCAAAG
1 GCTTTACAAAGATTTCGTCACAAAG
14497326 GCTT
1 GCTT
14497330 GGTTTGGCTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (25 bp):
GCTTTACAAAGATTTCGTCACAAAG
Found at i:14500141 original size:20 final size:21
Alignment explanation
Indices: 14500105--14500147 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
14500095 ACAAACATAT
14500105 TACATAATAACTATTTTA-AC
1 TACATAATAACTATTTTATAC
*
14500125 TACATAATCAC-ATTTTTATAC
1 TACATAATAACTA-TTTTATAC
14500146 TA
1 TA
14500148 AAACATAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 15 0.75
21 4 0.20
ACGTcount: A:0.42, C:0.16, G:0.00, T:0.42
Consensus pattern (21 bp):
TACATAATAACTATTTTATAC
Found at i:14502736 original size:57 final size:58
Alignment explanation
Indices: 14502667--14502785 Score: 143
Period size: 57 Copynumber: 2.1 Consensus size: 58
14502657 CCTTGTTCAT
* * * * *
14502667 TTTTCATTTTCATTTTGGAGAGAACCACATTCA-TTTCTAAATGATTCC-AATTCTCTA
1 TTTTAATTTTCATTTTGCAGAAAACCACAATCATTTTC-AAATGATTCCTAATTCTCCA
* * *
14502724 TTTTAATTTTCATTTTGCAGAAAACCATAATCATTTTCAAATGTTTCCTATTTCTCCA
1 TTTTAATTTTCATTTTGCAGAAAACCACAATCATTTTCAAATGATTCCTAATTCTCCA
14502782 TTTT
1 TTTT
14502786 CACCACTTCT
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
57 37 0.71
58 15 0.29
ACGTcount: A:0.28, C:0.18, G:0.07, T:0.47
Consensus pattern (58 bp):
TTTTAATTTTCATTTTGCAGAAAACCACAATCATTTTCAAATGATTCCTAATTCTCCA
Found at i:14505366 original size:26 final size:26
Alignment explanation
Indices: 14505337--14505390 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
14505327 TGTTGTAGAC
*
14505337 ATAATGGGTTAGGTAAATGTTCCATG
1 ATAATAGGTTAGGTAAATGTTCCATG
*
14505363 ATAATAGTTTAGGTAAATGTTCCATG
1 ATAATAGGTTAGGTAAATGTTCCATG
14505389 AT
1 AT
14505391 GGGCATTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.37
Consensus pattern (26 bp):
ATAATAGGTTAGGTAAATGTTCCATG
Found at i:14512377 original size:26 final size:26
Alignment explanation
Indices: 14512348--14512455 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
14512338 TGGTACAAAT
14512348 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
14512374 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14512400 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
14512426 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14512452 TGAT
1 TGAT
14512456 GGGCATATTG
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:14519940 original size:15 final size:15
Alignment explanation
Indices: 14519910--14519938 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
14519900 ACTATTAGTA
14519910 ATTTTTTAAATATTT
1 ATTTTTTAAATATTT
14519925 ATTTTTT-AATATTT
1 ATTTTTTAAATATTT
14519939 TACCATACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
ATTTTTTAAATATTT
Found at i:14527228 original size:91 final size:91
Alignment explanation
Indices: 14527073--14527254 Score: 346
Period size: 91 Copynumber: 2.0 Consensus size: 91
14527063 CTCTATTCTT
14527073 GAACTATAACCAGAGGTGTCTATAAGTAAAGCTGCGACTTGAAATATTTTTATCTCTTCCCCAAG
1 GAACTATAACCAGAGGTGTCTATAAGTAAAGCTGCGACTTGAAATATTTTTATCTCTTCCCCAAG
*
14527138 AGCTTGATATGGGTCAAGCCTGAGTC
66 AGCTTGATATGGGTCAAGACTGAGTC
*
14527164 GAACTATAACCAGAGGTGTCTGTAAGTAAAGCTGCGACTTGAAATATTTTTATCTCTTCCCCAAG
1 GAACTATAACCAGAGGTGTCTATAAGTAAAGCTGCGACTTGAAATATTTTTATCTCTTCCCCAAG
14527229 AGCTTGATATGGGTCAAGACTGAGTC
66 AGCTTGATATGGGTCAAGACTGAGTC
14527255 TGTCTTTGAA
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
91 89 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (91 bp):
GAACTATAACCAGAGGTGTCTATAAGTAAAGCTGCGACTTGAAATATTTTTATCTCTTCCCCAAG
AGCTTGATATGGGTCAAGACTGAGTC
Found at i:14531639 original size:13 final size:13
Alignment explanation
Indices: 14531621--14531645 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14531611 TACTTTAAAA
14531621 TTTATTAAAAACT
1 TTTATTAAAAACT
14531634 TTTATTAAAAAC
1 TTTATTAAAAAC
14531646 CCATAAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATTAAAAACT
Found at i:14535190 original size:13 final size:13
Alignment explanation
Indices: 14535172--14535209 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
14535162 ATAGTTCAAC
14535172 TAGAGAATTTTAT
1 TAGAGAATTTTAT
14535185 TAGAGAATTTTAT
1 TAGAGAATTTTAT
*
14535198 TAAAAGAATTTT
1 T-AGAGAATTTT
14535210 CTTGAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 14 0.61
14 9 0.39
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (13 bp):
TAGAGAATTTTAT
Found at i:14536178 original size:18 final size:18
Alignment explanation
Indices: 14536155--14536193 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
14536145 GGCTCATCTG
14536155 GTTGTATTTGTTGAAGTA
1 GTTGTATTTGTTGAAGTA
14536173 GTTGTATTTGTTGAAGTA
1 GTTGTATTTGTTGAAGTA
14536191 GTT
1 GTT
14536194 TGTGGAGTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.21, C:0.00, G:0.28, T:0.51
Consensus pattern (18 bp):
GTTGTATTTGTTGAAGTA
Found at i:14539157 original size:21 final size:20
Alignment explanation
Indices: 14539131--14539174 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
14539121 CATAAGAGGG
*
14539131 CAAAAAGAGTGAGAAACGGGC
1 CAAAAAGAGAGA-AAACGGGC
* *
14539152 CAAAAATAGAGAAAATGGGC
1 CAAAAAGAGAGAAAACGGGC
14539172 CAA
1 CAA
14539175 CGTGGGAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.52, C:0.14, G:0.27, T:0.07
Consensus pattern (20 bp):
CAAAAAGAGAGAAAACGGGC
Found at i:14541800 original size:26 final size:26
Alignment explanation
Indices: 14541770--14541820 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
14541760 AATTCAAAAT
14541770 CAATCAATTTATCATATTCATTAATA
1 CAATCAATTTATCATATTCATTAATA
14541796 CAATCAATTTATCATATTCATTAAT
1 CAATCAATTTATCATATTCATTAAT
14541821 TCCAATAAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.41, C:0.16, G:0.00, T:0.43
Consensus pattern (26 bp):
CAATCAATTTATCATATTCATTAATA
Found at i:14546982 original size:22 final size:21
Alignment explanation
Indices: 14546952--14547017 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
14546942 TACAAATTAA
14546952 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
14546974 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
14546995 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
14547014 ATCT
1 ATCT
14547018 AACATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:14547004 original size:19 final size:19
Alignment explanation
Indices: 14546969--14547121 Score: 251
Period size: 19 Copynumber: 8.2 Consensus size: 19
14546959 AGATTACAAG
14546969 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
14546990 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
14547009 ATCATATCTAACATTG--T
1 ATCATATCTAAGATTGCAT
14547026 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
14547045 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
14547064 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
14547081 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
14547100 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
14547119 ATC
1 ATC
14547122 CTTAAAGATT
Statistics
Matches: 126, Mismatches: 2, Indels: 10
0.91 0.01 0.07
Matches are distributed among these distances:
17 33 0.26
19 84 0.67
20 1 0.01
21 8 0.06
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:14547033 original size:36 final size:37
Alignment explanation
Indices: 14546969--14547121 Score: 231
Period size: 36 Copynumber: 4.1 Consensus size: 37
14546959 AGATTACAAG
14546969 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
*
14547009 ATCATATCTAACATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
14547045 ATCATATCTAAGATTGCATATCATATCTAAGATTG--T
1 ATCATATCTAAGATTG-ATATCATATCTAAGATTGCAT
14547081 ATCATATCTAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTG-ATATCATATCTAAGATTGCAT
14547119 ATC
1 ATC
14547122 CTTAAAGATT
Statistics
Matches: 107, Mismatches: 2, Indels: 10
0.90 0.02 0.08
Matches are distributed among these distances:
36 71 0.66
38 27 0.25
39 1 0.01
40 8 0.07
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:14547055 original size:55 final size:55
Alignment explanation
Indices: 14546969--14547121 Score: 279
Period size: 55 Copynumber: 2.7 Consensus size: 55
14546959 AGATTACAAG
14546969 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCATATCATATCTAACATTGT
1 ATCATATC-T-AAGATTGCATATCATATCTAAGATTGCATATCATATCTAACATTGT
*
14547026 ATCATATCTAAGATTGCATATCATATCTAAGATTGCATATCATATCTAAGATTGT
1 ATCATATCTAAGATTGCATATCATATCTAAGATTGCATATCATATCTAACATTGT
14547081 ATCATATCTAAGATTGCATATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTGCATATCATATCTAAGATTGCATATC
14547122 CTTAAAGATT
Statistics
Matches: 95, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
55 86 0.91
56 1 0.01
57 8 0.08
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (55 bp):
ATCATATCTAAGATTGCATATCATATCTAAGATTGCATATCATATCTAACATTGT
Found at i:14552461 original size:16 final size:17
Alignment explanation
Indices: 14552435--14552468 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
14552425 CTCAAATGAC
*
14552435 CTTGATAAACCTTATTT
1 CTTGATAAACCTCATTT
14552452 CTTG-TAAACCTCATTT
1 CTTGATAAACCTCATTT
14552468 C
1 C
14552469 ATCGGTCTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (17 bp):
CTTGATAAACCTCATTT
Found at i:14577183 original size:50 final size:50
Alignment explanation
Indices: 14577118--14577357 Score: 257
Period size: 50 Copynumber: 4.8 Consensus size: 50
14577108 ACCGAAGCTC
* *
14577118 TCTGGTACGCATAGTAGCCTACATTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAA
** * * *
14577168 TCTGGTACATGTAGTAGCCTACACTTAGTACTACACACGTGACCTAACCA
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAA
* * * * * * * * * *
14577218 TCAGATACACGTATTAGCCTGCACTTAGAACTACACATGTGATCGAAGCTA
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTAA-CAA
* * * *
14577269 TCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCCAACAA
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAA
*
14577319 TTTGGTACACATAGTAGCCTGA-ACTTAGTACTACACATG
1 TCTGGTACACATAGTAGCCT-ACACTTAGTACTACACATG
14577358 TCTTCTCACA
Statistics
Matches: 157, Mismatches: 31, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
50 117 0.75
51 40 0.25
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAA
Found at i:14584138 original size:60 final size:62
Alignment explanation
Indices: 14584011--14584153 Score: 152
Period size: 60 Copynumber: 2.3 Consensus size: 62
14584001 TCAAGCTCTA
* *
14584011 CTGGGCC-TAAGCCCTATT-CAGAAATCAGAGTTAACTCGGCTTTAGCACATATCAATATTAAT
1 CTGGGCCAT-AGCCCTATTACAG-TATCAGAGTTAACTCGGCTTTAGCACATATCAATATCAAT
* * * *
14584073 CTGGGCCATAGCCCT-TTACAGTATCAGAG-TATACTGGGC-TTAGCCCATATCAGTGTCAAT
1 CTGGGCCATAGCCCTATTACAGTATCAGAGTTA-ACTCGGCTTTAGCACATATCAATATCAAT
* *
14584133 TTGGGCCGTAGCCCTATTACA
1 CTGGGCCATAGCCCTATTACA
14584154 AGTTGAGATA
Statistics
Matches: 69, Mismatches: 8, Indels: 9
0.80 0.09 0.10
Matches are distributed among these distances:
60 32 0.46
61 20 0.29
62 16 0.23
63 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (62 bp):
CTGGGCCATAGCCCTATTACAGTATCAGAGTTAACTCGGCTTTAGCACATATCAATATCAAT
Found at i:14585685 original size:25 final size:22
Alignment explanation
Indices: 14585631--14585685 Score: 56
Period size: 25 Copynumber: 2.3 Consensus size: 22
14585621 TTTCGGGTAG
14585631 AGAAGAAAAGAAGGAGAAAAGA
1 AGAAGAAAAGAAGGAGAAAAGA
* *
14585653 AAATAGAAGAAGAGAGGAGAAGAGA
1 AGA-AGAA-AAGA-AGGAGAAAAGA
14585678 AGGAAGAA
1 A-GAAGAA
14585686 TTCGACACTC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 2 0.08
23 4 0.15
24 4 0.15
25 15 0.58
26 1 0.04
ACGTcount: A:0.64, C:0.00, G:0.35, T:0.02
Consensus pattern (22 bp):
AGAAGAAAAGAAGGAGAAAAGA
Found at i:14588674 original size:41 final size:41
Alignment explanation
Indices: 14588628--14588757 Score: 145
Period size: 41 Copynumber: 3.2 Consensus size: 41
14588618 GGTAGAAACA
*
14588628 CCGCTATTTCCTTACCTTTTGCGGCATTTATGGTAAAAATG
1 CCGCTATTTCCTTACCTTTTGCGGCATTTATGGCAAAAATG
* * * *** *
14588669 TCGCTATTTCCTAACC-TTTACGATGTTTATGGGAAAAATG
1 CCGCTATTTCCTTACCTTTTGCGGCATTTATGGCAAAAATG
* * * *
14588709 CCACTATTGCCTTACCTTTTGCGGCATTTGTGGCAGAAATG
1 CCGCTATTTCCTTACCTTTTGCGGCATTTATGGCAAAAATG
14588750 CCGCTATT
1 CCGCTATT
14588758 GCCTGTCTTT
Statistics
Matches: 69, Mismatches: 19, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
40 31 0.45
41 38 0.55
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.37
Consensus pattern (41 bp):
CCGCTATTTCCTTACCTTTTGCGGCATTTATGGCAAAAATG
Found at i:14591123 original size:43 final size:42
Alignment explanation
Indices: 14591076--14591169 Score: 109
Period size: 43 Copynumber: 2.2 Consensus size: 42
14591066 CCCGGATAGT
*
14591076 GTCTTACACGAAATC-AATTAACGATGCCAATGTCCCAGACATG
1 GTCTTACACGAAATCGAA-T-ACAATGCCAATGTCCCAGACATG
* * * *
14591119 GTCTTACACGTAATCTGAATCCAATGCCAATGTCCTAGACATT
1 GTCTTACACGAAATC-GAATACAATGCCAATGTCCCAGACATG
14591162 GTCTTACA
1 GTCTTACA
14591170 TGTAATCATA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
43 41 0.93
44 1 0.02
45 2 0.05
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.28
Consensus pattern (42 bp):
GTCTTACACGAAATCGAATACAATGCCAATGTCCCAGACATG
Found at i:14591322 original size:26 final size:26
Alignment explanation
Indices: 14591292--14591341 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14591282 TTCATAGCAA
*
14591292 TTCAATGATAATAAAACATATATAAT
1 TTCAATAATAATAAAACATATATAAT
14591318 TTCAATAATAATAAAACATATATA
1 TTCAATAATAATAAAACATATATA
14591342 TGAACTTACC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.56, C:0.08, G:0.02, T:0.34
Consensus pattern (26 bp):
TTCAATAATAATAAAACATATATAAT
Found at i:14602854 original size:14 final size:14
Alignment explanation
Indices: 14602835--14602867 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
14602825 CTCCACACGC
14602835 CCGTGTCCCAAAGT
1 CCGTGTCCCAAAGT
14602849 CCGTGTCCCAAAGT
1 CCGTGTCCCAAAGT
14602863 -CGTGT
1 CCGTGT
14602868 TCCATACATG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.18, C:0.33, G:0.24, T:0.24
Consensus pattern (14 bp):
CCGTGTCCCAAAGT
Found at i:14603060 original size:18 final size:19
Alignment explanation
Indices: 14603032--14603068 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
14603022 AAACCACAAA
*
14603032 CATAGCATTTGTATGTCAT
1 CATAGCATTTGTATCTCAT
14603051 CATA-CATTTGTATCTCAT
1 CATAGCATTTGTATCTCAT
14603069 ACTCATTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.27, C:0.19, G:0.11, T:0.43
Consensus pattern (19 bp):
CATAGCATTTGTATCTCAT
Found at i:14613542 original size:14 final size:15
Alignment explanation
Indices: 14613523--14613552 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
14613513 ATATTTAACT
14613523 TGTTCTTAATT-TTG
1 TGTTCTTAATTCTTG
14613537 TGTTCTTAATTCTTG
1 TGTTCTTAATTCTTG
14613552 T
1 T
14613553 TTTGATATCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.13, C:0.10, G:0.13, T:0.63
Consensus pattern (15 bp):
TGTTCTTAATTCTTG
Found at i:14620016 original size:49 final size:49
Alignment explanation
Indices: 14619961--14620188 Score: 258
Period size: 49 Copynumber: 4.6 Consensus size: 49
14619951 ATCTGGTACG
* *
14619961 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGATACA
* * * ** **
14620010 CGTAGTAGCCTGCACTTAATACTACACACGTGACCTAACCATTTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCGATACA
* * * * * *
14620060 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCAGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGATACA
*
14620111 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGATACA
* * *
14620160 CATAGTAACCTACGCTTAGTACTACACAC
1 CATAGTAGCCTGCACTTAGTACTACACAC
14620189 ATGACCTCAC
Statistics
Matches: 148, Mismatches: 28, Indels: 6
0.81 0.15 0.03
Matches are distributed among these distances:
49 65 0.44
50 46 0.31
51 37 0.25
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.25
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGATACA
Found at i:14620136 original size:101 final size:98
Alignment explanation
Indices: 14619961--14620188 Score: 276
Period size: 101 Copynumber: 2.3 Consensus size: 98
14619951 ATCTGGTACG
* * * *
14619961 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACT
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACAAATTATCAGGTACACATAGTAGCCTGCACT
* **
14620026 TAATACTACACACGTGACCTAACCATTTGATACA
66 TAATACTACACACGCGACC-AACCATCCGATACA
* * *
14620060 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCAGGTACGCATAGTAGCCTGCA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGA-CAAA-TTATCAGGTACACATAGTAGCCTGCA
* * **
14620125 CTTAGTACTACACATGCGACCAATTATCCGATACA
64 CTTAATACTACACACGCGACCAACCATCCGATACA
* * *
14620160 CATAGTAACCTACGCTTAGTACTACACAC
1 CATAGTAGCCTGCACTTAGTACTACACAC
14620189 ATGACCTCAC
Statistics
Matches: 109, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
99 30 0.28
100 38 0.35
101 41 0.38
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.25
Consensus pattern (98 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACAAATTATCAGGTACACATAGTAGCCTGCACT
TAATACTACACACGCGACCAACCATCCGATACA
Found at i:14624760 original size:33 final size:33
Alignment explanation
Indices: 14624723--14624788 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
14624713 GAATAAATTA
*
14624723 CTCCCCCT-TAATAAAATTCATTTTCCATTTAAG
1 CTCCCCCTAT-ATAAAATTCATTTTCAATTTAAG
*
14624756 CTCCCCCTATATAAAATTCGTTTTCAATTTAAG
1 CTCCCCCTATATAAAATTCATTTTCAATTTAAG
14624789 GCTTAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.30, C:0.26, G:0.05, T:0.39
Consensus pattern (33 bp):
CTCCCCCTATATAAAATTCATTTTCAATTTAAG
Found at i:14627060 original size:38 final size:39
Alignment explanation
Indices: 14626995--14627071 Score: 120
Period size: 38 Copynumber: 2.0 Consensus size: 39
14626985 TTTAACCTTA
14626995 CAACATCCCTTAAGATTTCTACCCAAAATCTTAAGATTG
1 CAACATCCCTTAAGATTTCTACCCAAAATCTTAAGATTG
* * *
14627034 CAAC-TCCCTTAAGGTTTTTACTCAAAATCTTAAGATTG
1 CAACATCCCTTAAGATTTCTACCCAAAATCTTAAGATTG
14627072 AATTCTCTCA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
38 31 0.89
39 4 0.11
ACGTcount: A:0.34, C:0.23, G:0.09, T:0.34
Consensus pattern (39 bp):
CAACATCCCTTAAGATTTCTACCCAAAATCTTAAGATTG
Found at i:14627753 original size:22 final size:24
Alignment explanation
Indices: 14627725--14627768 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
14627715 ATTTTGTTCA
14627725 ACTTTAACTT-TTAT-TCAAAAGC
1 ACTTTAACTTCTTATATCAAAAGC
*
14627747 ACTTTAATTTCTTATATCAAAA
1 ACTTTAACTTCTTATATCAAAA
14627769 CATATTATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.39, C:0.16, G:0.02, T:0.43
Consensus pattern (24 bp):
ACTTTAACTTCTTATATCAAAAGC
Found at i:14632330 original size:41 final size:45
Alignment explanation
Indices: 14632225--14632332 Score: 109
Period size: 45 Copynumber: 2.5 Consensus size: 45
14632215 ATGTGTTTTT
* * * *
14632225 GTGTAAGACCAC-ATGTGGGACGTTGGCATCGATATATGTGGTTAC
1 GTGTAAGACC-CTATCTGGGACATCGGCATCGATATATGTGATTAC
* *
14632270 GTGTAAGACCATGTCTGGGACATCGGCATC-ATAT-T-TGATT-C
1 GTGTAAGACCCTATCTGGGACATCGGCATCGATATATGTGATTAC
*
14632311 GTGTAAGACCCTATTTGGGACA
1 GTGTAAGACCCTATCTGGGACA
14632333 GTGGTATTGA
Statistics
Matches: 53, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
41 20 0.38
42 4 0.08
43 1 0.02
44 4 0.08
45 24 0.45
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (45 bp):
GTGTAAGACCCTATCTGGGACATCGGCATCGATATATGTGATTAC
Found at i:14641674 original size:33 final size:33
Alignment explanation
Indices: 14641624--14641723 Score: 173
Period size: 33 Copynumber: 3.0 Consensus size: 33
14641614 GGGGTGGGGT
*
14641624 TGGTGCTATGATGGAGGAAGTTTTCTGCAAGGC
1 TGGTGCTATGATAGAGGAAGTTTTCTGCAAGGC
* *
14641657 TGGTCCTATGATAGAGGAAGTTTTCTGCAAGGA
1 TGGTGCTATGATAGAGGAAGTTTTCTGCAAGGC
14641690 TGGTGCTATGATAGAGGAAGTTTTCTGCAAGGC
1 TGGTGCTATGATAGAGGAAGTTTTCTGCAAGGC
14641723 T
1 T
14641724 CTTAAGGCTG
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 62 1.00
ACGTcount: A:0.24, C:0.12, G:0.33, T:0.31
Consensus pattern (33 bp):
TGGTGCTATGATAGAGGAAGTTTTCTGCAAGGC
Found at i:14645353 original size:16 final size:16
Alignment explanation
Indices: 14645332--14645364 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
14645322 ACTTATGTCT
14645332 ATTAGAAGCCACCTAA
1 ATTAGAAGCCACCTAA
14645348 ATTAGAAGCCACCTAA
1 ATTAGAAGCCACCTAA
14645364 A
1 A
14645365 GATGATCGCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.24, G:0.12, T:0.18
Consensus pattern (16 bp):
ATTAGAAGCCACCTAA
Found at i:14656822 original size:42 final size:43
Alignment explanation
Indices: 14656757--14656874 Score: 132
Period size: 43 Copynumber: 2.8 Consensus size: 43
14656747 GACTTCTATT
* *
14656757 TTACGTGTAAGACCATGTGTGGGACATTGGCATC-ATATCTGA
1 TTACGTGTAAGACCCTGTCTGGGACATTGGCATCGATATCTGA
* * * * *
14656799 TTTCGTGTAAGACCCTATCTGGGACAGTGGCATCGATGTTTGA
1 TTACGTGTAAGACCCTGTCTGGGACATTGGCATCGATATCTGA
* *
14656842 TTACGTGAAAGACCAC-GTCTGGGACGTTGGCAT
1 TTACGTGTAAGACC-CTGTCTGGGACATTGGCAT
14656875 TGTCTCTGAG
Statistics
Matches: 62, Mismatches: 12, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
42 29 0.47
43 32 0.52
44 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (43 bp):
TTACGTGTAAGACCCTGTCTGGGACATTGGCATCGATATCTGA
Found at i:14664410 original size:603 final size:599
Alignment explanation
Indices: 14663272--14664475 Score: 1797
Period size: 603 Copynumber: 2.0 Consensus size: 599
14663262 CGAGCAATCC
* *
14663272 CACACCTAAAACAACAATTAACACCACCAGTTTCAGTAATAATTAGTGAAATTTAACTAATAATC
1 CACACCTAAAACAACAATTAACACCACCAATTTCAATAATAATTAGTGAAATTTAACTAATAATC
* *
14663337 AACCGCAATCAAACTACAACAGCCCTACAAAAAAACACATCCTCACACTTTGAACGAACATATAC
66 AACCACAATCAAACTACAACAGCCCTACAAAAAAACACATCCTCACACTTTGAACAAACATATAC
* * * * *
14663402 TATGCAAAACCTAAGGCATTGGACGAACAACCAACTGCTCTTGATTTTCACTTAACAATGTGCAA
131 TACGCAAAACCTAAGGCACTAGACGAACAACCAACTGCTCTCGATTTTCACCTAACAATGTGCAA
* * * *
14663467 ACAATTTGATTAAACAACTAAAACCCTGATTTCACTGCAAGATCACAACACACTAGCCAAAAACA
196 ACAATTAGATTAAACAACTAAAACCCCGATTACACTACAAGATCACAACACACTAGCCAAAAACA
*
14663532 AAAAGAAAAACCCAACCTTCCCAAATATCACAACTTACCAGATGACTCAATAGCAACAACAACCA
261 AAAACAAAAACCCAACCTTCCCAAATATCACAACTTACCAGATGACTCAATAGCAACAACAACCA
*
14663597 CAAAAAATCATGAGCAAAAGATCCAAGGAATTTAATCAAGATTCAATAAAAAAAAAGATTGAAGA
326 CAAAAAATCATGAACAAAAGATCCAAGGAATTTAATCAAGATTCAATAAAAAAAAAGATTGAAGA
* * *
14663662 AAGAAAGAAAAAGAACCAAAAAATCAAAGAATGGAACTGCTAGCACATGGGAAAAAATGACTTGA
391 AAGAAAGAAAAAGAACCAAAAAATCAAAGAATGGAACTACTAGCACATGGGAAAAAACGACGTGA
*
14663727 ATAGTGGGGTCTCAGGGAAACAAACGTGAAGTTAATGGAGCTATTTTTGGGGAACAAGAAAAATA
456 ATAGTGGGGTCTCAGGGAAACAAACGTGAAGTTAATGGAGCTATTTTTGGGGAAAAAGAAAAATA
* *
14663792 CTAAAGTCAAATAAATTAA-A-ACAAAAAAAAAGATCATGTTGAACAAACTTCTACAACTAATCC
521 CTAAAGTCAAATAAATTAACACACAAAAAAAAAGATCATGCTGAAAAAACTTCTACAACTAATCC
*
14663855 AAGTCATCAGAATT
586 AACTCATCAGAATT
14663869 CACACCTAAAACAACAATTAACACCACCAATTTCAATAATAATTAGTGAAATTTAACTAATAATC
1 CACACCTAAAACAACAATTAACACCACCAATTTCAATAATAATTAGTGAAATTTAACTAATAATC
* * * * *
14663934 AACCACAA-CTTAACTACAATAGCCTTACAAAAAAACACATCCTCACACTTAGCATTTAATAAAC
66 AACCACAATC-AAACTACAACAGCCCTACAAAAAAACACATCCTCACAC-T----TTGAACAAAC
** * **
14663998 A-ACTACTACGCAAAACCTAAGGTGCTAGAGGAACAACCAACTGCTCTCGATTTTCACCTAACTG
125 ATA-TACTACGCAAAACCTAAGGCACTAGACGAACAACCAACTGCTCTCGATTTTCACCTAACAA
* * * *
14664062 TGTGCAAACAATTAGATTAAATAGCTAAAACCCCGATTACACTACAAGATCACAACATAGTAGCC
189 TGTGCAAACAATTAGATTAAACAACTAAAACCCCGATTACACTACAAGATCACAACACACTAGCC
*
14664127 -AAAACAAAAACAAGAACCCAACCTTCCCAAATATCACAACTTACCAGATGACTCAATAGCAACA
254 AAAAACAAAAACAAAAACCCAACCTTCCCAAATATCACAACTTACCAGATGACTCAATAGCAACA
* * * *
14664191 ACGACCACAGAAAATCGTGAACAAAAGATCCAAGGAATTTTATCAAGATTCAATAGAAAAACAAA
319 ACAACCACAAAAAATCATGAACAAAAGATCCAAGGAATTTAATCAAGATTCAATA-AAAAA-AAA
* * * * * *
14664256 GATTGAAGAAAGAAAGAAAAATAATCAAAGAATTAGAGAATGGAACTACTGGCACATGGGAAAAA
382 GATTGAAGAAAGAAAGAAAAAGAACCAAAAAATCAAAGAATGGAACTACTAGCACATGGGAAAAA
* ** * * *
14664321 ACGACGTGAATAGTGGGGTTTTGGGGAAACAAATGTGATGTTAATGGAGTTATTTTTGGGGAAAA
447 ACGACGTGAATAGTGGGGTCTCAGGGAAACAAACGTGAAGTTAATGGAGCTATTTTTGGGGAAAA
*
14664386 AGAAAAATACTAGAGTCAAATAAATTAACACACAAAAAAAAAGATCATGCTGAAAAAACTTCTAC
512 AGAAAAATACTAAAGTCAAATAAATTAACACACAAAAAAAAAGATCATGCTGAAAAAACTTCTAC
*
14664451 AACTAATCCAACTCATCAGGATT
577 AACTAATCCAACTCATCAGAATT
14664474 CA
1 CA
14664476 AAATTTCCCT
Statistics
Matches: 541, Mismatches: 55, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
596 1 0.00
597 105 0.19
598 1 0.00
601 113 0.21
602 121 0.22
603 144 0.27
604 1 0.00
605 55 0.10
ACGTcount: A:0.47, C:0.20, G:0.13, T:0.20
Consensus pattern (599 bp):
CACACCTAAAACAACAATTAACACCACCAATTTCAATAATAATTAGTGAAATTTAACTAATAATC
AACCACAATCAAACTACAACAGCCCTACAAAAAAACACATCCTCACACTTTGAACAAACATATAC
TACGCAAAACCTAAGGCACTAGACGAACAACCAACTGCTCTCGATTTTCACCTAACAATGTGCAA
ACAATTAGATTAAACAACTAAAACCCCGATTACACTACAAGATCACAACACACTAGCCAAAAACA
AAAACAAAAACCCAACCTTCCCAAATATCACAACTTACCAGATGACTCAATAGCAACAACAACCA
CAAAAAATCATGAACAAAAGATCCAAGGAATTTAATCAAGATTCAATAAAAAAAAAGATTGAAGA
AAGAAAGAAAAAGAACCAAAAAATCAAAGAATGGAACTACTAGCACATGGGAAAAAACGACGTGA
ATAGTGGGGTCTCAGGGAAACAAACGTGAAGTTAATGGAGCTATTTTTGGGGAAAAAGAAAAATA
CTAAAGTCAAATAAATTAACACACAAAAAAAAAGATCATGCTGAAAAAACTTCTACAACTAATCC
AACTCATCAGAATT
Found at i:14669259 original size:38 final size:38
Alignment explanation
Indices: 14669217--14669290 Score: 148
Period size: 38 Copynumber: 1.9 Consensus size: 38
14669207 CTATTTGGTT
14669217 GAGCACTACCAACACTCGCGATAGAAGTGGTGTGAGTC
1 GAGCACTACCAACACTCGCGATAGAAGTGGTGTGAGTC
14669255 GAGCACTACCAACACTCGCGATAGAAGTGGTGTGAG
1 GAGCACTACCAACACTCGCGATAGAAGTGGTGTGAG
14669291 CTTTAGGCAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.30, C:0.23, G:0.30, T:0.18
Consensus pattern (38 bp):
GAGCACTACCAACACTCGCGATAGAAGTGGTGTGAGTC
Found at i:14672009 original size:48 final size:47
Alignment explanation
Indices: 14671942--14672503 Score: 495
Period size: 48 Copynumber: 11.6 Consensus size: 47
14671932 TAAATTGCCA
* * *
14671942 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATGTCGAGGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAT-GAGGCCG
* * * * * *
14671990 ATTCCATGTCCCAGACATGGTCTTACACTAGCTCTA-GTCTCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTC-ACATAT-GAGGCCG
* * * *
14672038 ATGCCATGTCCTAAACATGGTCTTACACTGGCTCTCATAAT-ATGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-ATGA-GGCCG
* *
14672086 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAT-GAGGCCG
** * * * * * *
14672134 ATTTCATGTCCCAGACATAGTCTTACACTAGCTCTA-GTCTCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTC-ACATAT-GAGGCCG
* * * * *
14672182 ATGCCATGTCCTAAACATGGTCTTACACTGGCTCTCATAATGTGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-ATGAGGCCG
* *
14672230 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCTAACA-ATGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTC--ACATATGAGGCCG
* *
14672278 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTA-ATAATGTGGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTC-ACAT-ATGAGGCCG
* * *
14672326 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATATAATATGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACT-G-GCTCA-CATAT--GA-GGCCG
* * *
14672379 ATGCCATGTCCCGGACATGGTCTTACACTGGCTCTCATAATGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-ATGAGGCCG
* * * * *
14672427 ATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAT-GAGGCCG
* *
14672475 ATGCCATATCACAGACATGGTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
14672504 ATCACACATA
Statistics
Matches: 420, Mismatches: 72, Indels: 44
0.78 0.13 0.08
Matches are distributed among these distances:
46 1 0.00
47 5 0.01
48 358 0.85
49 7 0.02
50 9 0.02
51 7 0.02
52 1 0.00
53 32 0.08
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.27
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATGAGGCCG
Found at i:14672202 original size:144 final size:143
Alignment explanation
Indices: 14671942--14672503 Score: 688
Period size: 144 Copynumber: 3.9 Consensus size: 143
14671932 TAAATTGCCA
* *
14671942 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATGTCGAGGCCAATTCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGT-GAGGCCAATGCCATGTCCCAGACA
*
14672007 TGGTCTTACACTAGCTCTAGTCTCAATGCCGATGCCATGTCCTAAACATGGTCTTACACTGGCTC
65 TGGTCTTACACTAGCTCTAGTATCAATGCCGATGCCATGTCCTAAACATGGTCTTACACTGGCTC
14672072 TCATAATATGGCTG
130 TCATAATATGGCTG
**
14672086 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCAATTTCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGT-GAGGCCAATGCCATGTCCCAGACA
* *
14672151 TAGTCTTACACTAGCTCTAGTCTCAATGCCGATGCCATGTCCTAAACATGGTCTTACACTGGCTC
65 TGGTCTTACACTAGCTCTAGTATCAATGCCGATGCCATGTCCTAAACATGGTCTTACACTGGCTC
*
14672216 TCATAATGTGGCTG
130 TCATAATATGGCTG
* *
14672230 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCTAACAATGT--GGCCGATGCCATGTCCCAGA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTC--AC-ATGTGAGGCCAATGCCATGTCCCAGA
* * * *
14672293 CATGGTCTTACACTGGCTCTA--AT-AATGTGGCCAATGCCATGTCCCAGACATGGTCTTACACT
63 CATGGTCTTACACTAGCTCTAGTATCAA--T-GCCGATGCCATGTCCTAAACATGGTCTTACACT
* *
14672355 AGCTCTCATAATATAATATGGCCG
125 GGCTCTC-----ATAATATGGCTG
* * * * * *
14672379 ATGCCATGTCCCGGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAAACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-GTGAGGCCAATGCCATGTCCCAGACA
* * * * *
14672444 TGGTCTTACACTAGCAC-ACATATCAACGCCGATGCCATATCAC-AGACATGGTCTTACACT
65 TGGTCTTACACTAGCTCTA-GTATCAATGCCGATGCCATGTC-CTAAACATGGTCTTACACT
14672504 ATCACACATA
Statistics
Matches: 372, Mismatches: 27, Indels: 33
0.86 0.06 0.08
Matches are distributed among these distances:
141 2 0.01
142 1 0.00
143 1 0.00
144 245 0.66
146 4 0.01
147 6 0.02
148 1 0.00
149 107 0.29
150 1 0.00
151 2 0.01
152 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.27
Consensus pattern (143 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTGAGGCCAATGCCATGTCCCAGACAT
GGTCTTACACTAGCTCTAGTATCAATGCCGATGCCATGTCCTAAACATGGTCTTACACTGGCTCT
CATAATATGGCTG
Found at i:14672510 original size:48 final size:48
Alignment explanation
Indices: 14672423--14672516 Score: 152
Period size: 48 Copynumber: 2.0 Consensus size: 48
14672413 TCATAATGTG
* *
14672423 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAAC
1 GCCGATGCCATATCACAAACATGGTCTTACACTAGCACACATATCAAC
* *
14672471 GCCGATGCCATATCACAGACATGGTCTTACACTATCACACATATCA
1 GCCGATGCCATATCACAAACATGGTCTTACACTAGCACACATATCA
14672517 CCCATATGTC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.32, C:0.32, G:0.14, T:0.22
Consensus pattern (48 bp):
GCCGATGCCATATCACAAACATGGTCTTACACTAGCACACATATCAAC
Found at i:14674085 original size:14 final size:14
Alignment explanation
Indices: 14674066--14674101 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
14674056 TTAAAAATAA
14674066 AAATAAAATAAAAT
1 AAATAAAATAAAAT
* *
14674080 AAATAAAGTTAAAT
1 AAATAAAATAAAAT
14674094 AAATAAAA
1 AAATAAAA
14674102 AAGACACAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (14 bp):
AAATAAAATAAAAT
Found at i:14675259 original size:25 final size:25
Alignment explanation
Indices: 14675230--14675281 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
14675220 TGTCACATGG
14675230 CTGAGACACACGGTCGTGTCTCTGC
1 CTGAGACACACGGTCGTGTCTCTGC
14675255 CTGAGACACACGGTCGTGTCTCTGC
1 CTGAGACACACGGTCGTGTCTCTGC
14675280 CT
1 CT
14675282 ATGTGCACGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.15, C:0.33, G:0.27, T:0.25
Consensus pattern (25 bp):
CTGAGACACACGGTCGTGTCTCTGC
Found at i:14676463 original size:25 final size:25
Alignment explanation
Indices: 14676412--14676492 Score: 83
Period size: 25 Copynumber: 3.3 Consensus size: 25
14676402 GTACATGTAT
* * *
14676412 GCTCATACAAGCTGCA-AATGGTAA
1 GCTCATACGAGCTGGATAACGGTAA
* *
14676436 GCTCCTCCGAGCTGGATAACGGTAA
1 GCTCATACGAGCTGGATAACGGTAA
* * *
14676461 GCTCATATGAGCTGGGTATCGGTAA
1 GCTCATACGAGCTGGATAACGGTAA
14676486 GCTCATA
1 GCTCATA
14676493 AGAGTTGTTA
Statistics
Matches: 46, Mismatches: 10, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
24 12 0.26
25 34 0.74
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (25 bp):
GCTCATACGAGCTGGATAACGGTAA
Found at i:14681179 original size:38 final size:38
Alignment explanation
Indices: 14681100--14681197 Score: 108
Period size: 38 Copynumber: 2.5 Consensus size: 38
14681090 TGTCCTAAAC
* * * *
14681100 TATGACATAATTAAAAACCCTTATTAAAAATATTTAGAT
1 TATGACATAATT-AAAACTCATATTAAAAATATTCAAAT
*
14681139 TATGACATAATTAAAACTCATA-TAAATAATGTTCAAAT
1 TATGACATAATTAAAACTCATATTAAA-AATATTCAAAT
*
14681177 TATGGCATAATTAAATACTCA
1 TATGACATAATTAAA-ACTCA
14681198 AACTAATTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
37 4 0.08
38 30 0.59
39 17 0.33
ACGTcount: A:0.48, C:0.11, G:0.06, T:0.35
Consensus pattern (38 bp):
TATGACATAATTAAAACTCATATTAAAAATATTCAAAT
Found at i:14682849 original size:25 final size:25
Alignment explanation
Indices: 14682805--14682896 Score: 107
Period size: 25 Copynumber: 3.7 Consensus size: 25
14682795 TATGCTCATA
14682805 CGAGCTG--TAAATGGTAAGCTCCTC
1 CGAGCTGAATAAA-GGTAAGCTCCTC
* *
14682829 CGAGCTGAATTACGGTAAGCTCCTC
1 CGAGCTGAATAAAGGTAAGCTCCTC
*
14682854 CGAGCTAAATAAAGGTAAGCTCCTC
1 CGAGCTGAATAAAGGTAAGCTCCTC
* * *
14682879 TGAGTTGAATAATGGTAA
1 CGAGCTGAATAAAGGTAA
14682897 TCTTATACGA
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
24 7 0.12
25 48 0.84
26 2 0.04
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (25 bp):
CGAGCTGAATAAAGGTAAGCTCCTC
Found at i:14682908 original size:50 final size:51
Alignment explanation
Indices: 14682798--14682909 Score: 122
Period size: 50 Copynumber: 2.3 Consensus size: 51
14682788 GTACATGTAT
* *
14682798 GCTCATACGAGCT--GTAAATGGTAAGCTCCTCCGAGCTGAATTACGGTAA
1 GCTCATACGAGCTAAATAAATGGTAAGCTCCTCCGAGCTGAATAACGGTAA
* * * * *
14682847 GCTCCTCCGAGCTAAATAAA-GGTAAGCTCCTCTGAGTTGAATAATGGTAA
1 GCTCATACGAGCTAAATAAATGGTAAGCTCCTCCGAGCTGAATAACGGTAA
* *
14682897 TCTTATACGAGCT
1 GCTCATACGAGCT
14682910 GAGTATCGGT
Statistics
Matches: 50, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
49 11 0.22
50 35 0.70
51 4 0.08
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27
Consensus pattern (51 bp):
GCTCATACGAGCTAAATAAATGGTAAGCTCCTCCGAGCTGAATAACGGTAA
Found at i:14685835 original size:46 final size:45
Alignment explanation
Indices: 14685782--14685954 Score: 197
Period size: 46 Copynumber: 3.8 Consensus size: 45
14685772 TTGGGCATCT
14685782 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCC
*** * *
14685828 GAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-TCC
1 GAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAGTCC
* *
14685875 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCC
* *
14685921 GAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
14685955 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 65 0.61
47 32 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGTCC
Found at i:14685934 original size:93 final size:93
Alignment explanation
Indices: 14685775--14685946 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
14685765 AGGATATTTG
* * *
14685775 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
14685840 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
14685868 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
14685933 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
14685947 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:14694499 original size:48 final size:46
Alignment explanation
Indices: 14694444--14694556 Score: 140
Period size: 48 Copynumber: 2.4 Consensus size: 46
14694434 GGTTATTTGT
*
14694444 GATCCCATGTAAGACCATGTATAGG-TCATGGCATTGGCATCATCATGC
1 GATCCCATGTAAGACCATGTATAGGAACATGGCATTGGCAT--T-ATGC
* * * *
14694492 GATCCCATGTAAAACCAT-TTTTGGAACATGGCATTGGCATTGTGC
1 GATCCCATGTAAGACCATGTATAGGAACATGGCATTGGCATTATGC
14694537 GATCCCATGTAAGACCATGT
1 GATCCCATGTAAGACCATGT
14694557 CTGGGACATC
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
45 20 0.35
46 2 0.04
47 4 0.07
48 31 0.54
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Consensus pattern (46 bp):
GATCCCATGTAAGACCATGTATAGGAACATGGCATTGGCATTATGC
Found at i:14694554 original size:45 final size:47
Alignment explanation
Indices: 14694444--14694576 Score: 146
Period size: 45 Copynumber: 2.9 Consensus size: 47
14694434 GGTTATTTGT
*
14694444 GATCCCATGTAAGACCATGTATAGGTCATGGCATTGGCATCATCATGC
1 GATCCCATGTAAGACCATGTATAGGACATGGCATTGGCAT-ATCATGC
* * * *
14694492 GATCCCATGTAAAACCAT-TTTTGGAACATGGCATTGGCAT-T-GTGC
1 GATCCCATGTAAGACCATGTATAGG-ACATGGCATTGGCATATCATGC
* * * *
14694537 GATCCCATGTAAGACCATGTCTGGGACATCGTATTGGCAT
1 GATCCCATGTAAGACCATGTATAGGACATGGCATTGGCAT
14694577 CGATATGAGA
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
45 33 0.45
46 5 0.07
47 4 0.05
48 31 0.42
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (47 bp):
GATCCCATGTAAGACCATGTATAGGACATGGCATTGGCATATCATGC
Found at i:14702900 original size:15 final size:15
Alignment explanation
Indices: 14702880--14702910 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
14702870 GTATGTACCA
14702880 ATTCCATTATGATAT
1 ATTCCATTATGATAT
14702895 ATTCCATTATGATAT
1 ATTCCATTATGATAT
14702910 A
1 A
14702911 GCCTATGGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.45
Consensus pattern (15 bp):
ATTCCATTATGATAT
Found at i:14709129 original size:48 final size:48
Alignment explanation
Indices: 14708852--14709131 Score: 209
Period size: 48 Copynumber: 5.9 Consensus size: 48
14708842 CATGGTAACG
* *
14708852 TGCCAATGCCAAATCCCAGATATGGTCTTACATGGGACCAT-ATATCGA
1 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGATC-TCATATCGA
* * *
14708900 TGCCAATGCCATGTCCCAGATAGGGTCTTACATGGGATCACATAT--A
1 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCTCATATCGA
* * * *
14708946 T-CGAA-GCCGATAGCCCA-ACTATGGTCTTACA--CGATGTCCTATATCGA
1 TGCCAATGCC-ATATCCCAGA-TATGGTCTTACATGGGATCT-C-ATATCGA
* * * * *
14708993 TGCCAATGCCATGTCCCGGACATGGTCTTACATGGGATCACATAACGA
1 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCTCATATCGA
* * * * * * ** *
14709041 TGCAAAAGCCATGTCCCAAACATGG-CTTTATATGAAATCTCACATCGA
1 TGCCAATGCCATATCCCAGATATGGTC-TTACATGGGATCTCATATCGA
* * *
14709089 TGCCGATGCCATATCCCAGATATGGTCTTATACGGGATCTCAT
1 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCTCAT
14709132 CAACCCGATG
Statistics
Matches: 177, Mismatches: 41, Indels: 28
0.72 0.17 0.11
Matches are distributed among these distances:
43 3 0.02
44 5 0.03
45 24 0.14
46 2 0.01
47 3 0.02
48 131 0.74
49 6 0.03
50 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (48 bp):
TGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCTCATATCGA
Found at i:14709512 original size:67 final size:67
Alignment explanation
Indices: 14709404--14709538 Score: 270
Period size: 67 Copynumber: 2.0 Consensus size: 67
14709394 CTATAATAGC
14709404 AAATTTCACTTATTTAATTATCACATTATTCAAACCAGTCCATAAATCATATTTTTGTAAAATTA
1 AAATTTCACTTATTTAATTATCACATTATTCAAACCAGTCCATAAATCATATTTTTGTAAAATTA
14709469 CA
66 CA
14709471 AAATTTCACTTATTTAATTATCACATTATTCAAACCAGTCCATAAATCATATTTTTGTAAAATTA
1 AAATTTCACTTATTTAATTATCACATTATTCAAACCAGTCCATAAATCATATTTTTGTAAAATTA
14709536 CA
66 CA
14709538 A
1 A
14709539 TTTTACCCCT
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 68 1.00
ACGTcount: A:0.41, C:0.16, G:0.03, T:0.40
Consensus pattern (67 bp):
AAATTTCACTTATTTAATTATCACATTATTCAAACCAGTCCATAAATCATATTTTTGTAAAATTA
CA
Found at i:14710933 original size:58 final size:58
Alignment explanation
Indices: 14710843--14710960 Score: 184
Period size: 58 Copynumber: 2.0 Consensus size: 58
14710833 ACCTCAATAA
14710843 GTTTGTGTAACTTACAAGCATTATCTTTATGTTTCAGGGATTGACG-AAAAGTGAGTTC
1 GTTTGTGTAACTTACAAGCATTATCTTTATGTTTCAGGGATTGA-GAAAAAGTGAGTTC
** *
14710901 GTTTGTGTAACTTACAAGTGTTATCTTTATGTTTCAGGTATTGAGAAAAAAGTGAGTTC
1 GTTTGTGTAACTTACAAGCATTATCTTTATGTTTCAGGGATTGAG-AAAAAGTGAGTTC
14710960 G
1 G
14710961 CCAAGAGAGA
Statistics
Matches: 55, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
57 1 0.02
58 41 0.75
59 13 0.24
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.39
Consensus pattern (58 bp):
GTTTGTGTAACTTACAAGCATTATCTTTATGTTTCAGGGATTGAGAAAAAGTGAGTTC
Found at i:14713021 original size:6 final size:6
Alignment explanation
Indices: 14713010--14713048 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
14713000 CAATTAATAG
*
14713010 AGATGT AGATGT AGATGT AGATGT AGATGT AGAGGT AGA
1 AGATGT AGATGT AGATGT AGATGT AGATGT AGATGT AGA
14713049 ATTAACAACT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.36, C:0.00, G:0.36, T:0.28
Consensus pattern (6 bp):
AGATGT
Found at i:14713457 original size:17 final size:18
Alignment explanation
Indices: 14713435--14713468 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
14713425 AAGAACTTCA
14713435 ATTTTAAATTTT-GTTTG
1 ATTTTAAATTTTAGTTTG
14713452 ATTTTAAATTTTAGTTT
1 ATTTTAAATTTTAGTTT
14713469 TAATTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.65
Consensus pattern (18 bp):
ATTTTAAATTTTAGTTTG
Found at i:14715822 original size:45 final size:45
Alignment explanation
Indices: 14715757--14715971 Score: 217
Period size: 45 Copynumber: 4.9 Consensus size: 45
14715747 TGTACAGTAC
* *
14715757 TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
1 TATTCGGGCCTTTGAACCTAGCAGGCTATAATGCCGGTGAGATAT
* * *
14715802 TATTCGGGCCTTTGAACCTAGTAGGCTACAATGCCGGTGAGACAT
1 TATTCGGGCCTTTGAACCTAGCAGGCTATAATGCCGGTGAGATAT
* * * *
14715847 TATCCGGGCCTTGGAACCTAGTAGGCTATAATGCCAGTGAGATAT
1 TATTCGGGCCTTTGAACCTAGCAGGCTATAATGCCGGTGAGATAT
* * * *
14715892 TATTCGGGCC-TCGAGCCTAGCAGGC-AAAATACCGGTGA-ATGA-
1 TATTCGGGCCTTTGAACCTAGCAGGCTATAATGCCGGTGAGAT-AT
* ** * *
14715934 -ATTCGAGTTTTTAAACCTAGCAGGCTA-AATGTCGGTGA
1 TATTCGGGCCTTTGAACCTAGCAGGCTATAATGCCGGTGA
14715972 TTTGATAAAA
Statistics
Matches: 142, Mismatches: 25, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
41 6 0.04
42 23 0.16
43 12 0.08
44 12 0.08
45 89 0.63
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTTGAACCTAGCAGGCTATAATGCCGGTGAGATAT
Found at i:14727627 original size:48 final size:48
Alignment explanation
Indices: 14727513--14727880 Score: 272
Period size: 48 Copynumber: 7.6 Consensus size: 48
14727503 TATGTGTGCT
* * * * * * **
14727513 AGTGTAAGACTATGTCTGGGAAATGGCAACAGCCACATTAT-GGAACC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATAAGAGGC
14727560 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATAAGAGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATAAGAGGC
* * *
14727608 AGTGTAAGACCATGTCTGGGACATGGCATTGGCC--ATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATAAGAGGC
* * * * * *
14727654 AGTGTAAAACCATGTCTAGGACATGGCAT--GACATATGGGTGATATGTGTGAT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATAT---T-ATAAGAG-G-C
* * * * * *
14727706 AGTGTAAGACCATGTCTGTGATATGGCATCGG-CGT-TGATATGTGTGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATAAGAG-GC
* * * *
14727753 TAGTGTAAGACCATATCTGGGACATGGCATCGGCCACAATATGAGA-GC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATAAGAGGC
* * *
14727801 TAGTGTAAGACCATGTCTGGGACATGGCATTGG-CAT-TGAGACA-AGAGC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATA-AGAG-GC
*
14727849 TAGTGTAAGACCATGTCTAGGACATGGCATCG
1 -AGTGTAAGACCATGTCTGGGACATGGCATCG
14727881 ATAATTTACC
Statistics
Matches: 259, Mismatches: 45, Indels: 33
0.77 0.13 0.10
Matches are distributed among these distances:
44 2 0.01
46 41 0.16
47 39 0.15
48 139 0.54
49 2 0.01
50 7 0.03
52 26 0.10
53 2 0.01
54 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATAAGAGGC
Found at i:14727772 original size:146 final size:148
Alignment explanation
Indices: 14727560--14727830 Score: 388
Period size: 146 Copynumber: 1.8 Consensus size: 148
14727550 TTATGGAACC
* *
14727560 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATAAGAGGCAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATGATAAGAGGCAGTGTAAGACCATATCT
* *
14727625 GGGACATGGCATTGG-C-CATTATGAGAGCCAGTGTAAAACCATGTCTAGGACATGGCATGACAT
66 GGGACATGGCATCGGCCACAATATGAGAGCCAGTGTAAAACCATGTCTAGGACATGGCATGACAT
14727688 ATGGGTGATATGTGTGAT
131 ATGGGTGATATGTGTGAT
* * * * *
14727706 AGTGTAAGACCATGTCTGTGATATGGCATCGG-CGT-TGATATGTGTGCTAGTGTAAGACCATAT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATGATAAGAG-GC-AGTGTAAGACCATAT
* * *
14727769 CTGGGACATGGCATCGGCCACAATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
64 CTGGGACATGGCATCGGCCACAATATGAGAGCCAGTGTAAAACCATGTCTAGGACATGGCAT
14727831 TGGCATTGAG
Statistics
Matches: 109, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
144 6 0.06
145 4 0.04
146 60 0.55
147 1 0.01
148 38 0.35
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.26
Consensus pattern (148 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATGATAAGAGGCAGTGTAAGACCATATCT
GGGACATGGCATCGGCCACAATATGAGAGCCAGTGTAAAACCATGTCTAGGACATGGCATGACAT
ATGGGTGATATGTGTGAT
Found at i:14727815 original size:194 final size:193
Alignment explanation
Indices: 14727482--14727878 Score: 523
Period size: 194 Copynumber: 2.0 Consensus size: 193
14727472 ATTGGATATC
* * * *
14727482 CATGCCATGACATTTGGGTGATATGTGTGCTAGTGTAAGACTATGTCTGGGAAATGGCAACAGCC
1 CATGGCATGACATATGGGTGATATGTGTGATAGTGTAAGACCATGTCTGGGAAATGGCAACAGCC
* * *
14727547 ACATTATGGAACCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATAAGAGGCAGTG
66 ACATTATGGAACCAGTGTAAGACCATATCTGGGACATGGCATCGGCCACAATATAAGAGGCAGTG
14727612 TAAGACCATGTCTGGGACATGGCATTGGCCATT-ATG-AGAGCCAGTGTAAAACCATGTCTAGGA
131 TAAGACCATGTCTGGGACATGGCATTGG-CATTGA-GAAGAGCCAGTGTAAAACCATGTCTAGGA
* * * *
14727675 CATGGCATGACATATGGGTGATATGTGTGATAGTGTAAGACCATGTCTGTGATATGGCATCGGCG
1 CATGGCATGACATATGGGTGATATGTGTGATAGTGTAAGACCATGTCTGGGAAATGGCAACAGC-
*** ** * *
14727740 TTGA-TATGTGTGCTAGTGTAAGACCATATCTGGGACATGGCATCGGCCACAATATGAGA-GCTA
65 CACATTATG-GAACCAGTGTAAGACCATATCTGGGACATGGCATCGGCCACAATATAAGAGGC-A
* *
14727803 GTGTAAGACCATGTCTGGGACATGGCATTGGCATTGAGACAAGAGCTAGTGTAAGACCATGTCTA
128 GTGTAAGACCATGTCTGGGACATGGCATTGGCATTGAG--AAGAGCCAGTGTAAAACCATGTCTA
14727868 GGA
191 GGA
14727871 CATGGCAT
1 CATGGCAT
14727879 CGATAATTTA
Statistics
Matches: 177, Mismatches: 20, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
193 67 0.38
194 77 0.44
196 33 0.19
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (193 bp):
CATGGCATGACATATGGGTGATATGTGTGATAGTGTAAGACCATGTCTGGGAAATGGCAACAGCC
ACATTATGGAACCAGTGTAAGACCATATCTGGGACATGGCATCGGCCACAATATAAGAGGCAGTG
TAAGACCATGTCTGGGACATGGCATTGGCATTGAGAAGAGCCAGTGTAAAACCATGTCTAGGA
Found at i:14730206 original size:28 final size:27
Alignment explanation
Indices: 14730164--14730261 Score: 90
Period size: 28 Copynumber: 3.5 Consensus size: 27
14730154 TAATTATATG
** * *
14730164 TGGCACTTAACGTGCGAAGTATTGGGGA
1 TGGCACTTAGTGTGC-AAGTATCGAGGA
* *
14730192 TGGCACTTAGTGTGCAA-TACATCCAGAA
1 TGGCACTTAGTGTGCAAGT--ATCGAGGA
*
14730220 TGGCACTTAGTGTGCAAAGTAACGAGGA
1 TGGCACTTAGTGTGC-AAGTATCGAGGA
14730248 TGGCACTTAGTGTG
1 TGGCACTTAGTGTG
14730262 TGAAATCCAG
Statistics
Matches: 57, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
26 1 0.02
27 2 0.04
28 51 0.89
29 2 0.04
30 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.26
Consensus pattern (27 bp):
TGGCACTTAGTGTGCAAGTATCGAGGA
Found at i:14730313 original size:54 final size:54
Alignment explanation
Indices: 14730212--14730315 Score: 122
Period size: 54 Copynumber: 1.9 Consensus size: 54
14730202 TGTGCAATAC
* * **
14730212 ATCCAGAATGGCACTTAGTGTGCAAAGTAACGAGGATGGCACTTAGTGTGTGAA
1 ATCCAGAACGACACTTAGTGTGCAAAGTAACGAGGATAACACTTAGTGTGTGAA
* *
14730266 ATCCAGAACGACACTTAGTGTGCAAGGTATCG-GGTATAACA-TCTAGTGTG
1 ATCCAGAACGACACTTAGTGTGCAAAGTAACGAGG-ATAACACT-TAGTGTG
14730316 CGATATATTG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
53 3 0.07
54 39 0.93
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (54 bp):
ATCCAGAACGACACTTAGTGTGCAAAGTAACGAGGATAACACTTAGTGTGTGAA
Found at i:14730427 original size:32 final size:32
Alignment explanation
Indices: 14730366--14730432 Score: 89
Period size: 32 Copynumber: 2.1 Consensus size: 32
14730356 TGAGTATGAG
* **
14730366 ATTGGTACGATATGGTACAGGTATCTACGAAA
1 ATTGGTACAATATAATACAGGTATCTACGAAA
* *
14730398 ATTGGTACAATATAATACATGTATGTACGAAA
1 ATTGGTACAATATAATACAGGTATCTACGAAA
14730430 ATT
1 ATT
14730433 CAATTGAGTA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.39, C:0.10, G:0.19, T:0.31
Consensus pattern (32 bp):
ATTGGTACAATATAATACAGGTATCTACGAAA
Found at i:14734691 original size:23 final size:23
Alignment explanation
Indices: 14734664--14734709 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
14734654 GGGAGTTCGC
14734664 GAGTGCACCATTCACAAAACAGT
1 GAGTGCACCATTCACAAAACAGT
*
14734687 GAGTGCACCATTCACAAAGCAGT
1 GAGTGCACCATTCACAAAACAGT
14734710 CTGTAGATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.37, C:0.26, G:0.20, T:0.17
Consensus pattern (23 bp):
GAGTGCACCATTCACAAAACAGT
Found at i:14750040 original size:16 final size:18
Alignment explanation
Indices: 14750015--14750055 Score: 50
Period size: 16 Copynumber: 2.4 Consensus size: 18
14750005 TATAGACTCA
*
14750015 ATATAAAAC-TAAACAT-
1 ATATATAACTTAAACATC
*
14750031 ATATATAACTTAATCATC
1 ATATATAACTTAAACATC
14750049 ATATATA
1 ATATATA
14750056 CATGCAAGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 8 0.38
17 6 0.29
18 7 0.33
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.34
Consensus pattern (18 bp):
ATATATAACTTAAACATC
Found at i:14752086 original size:28 final size:28
Alignment explanation
Indices: 14752054--14752123 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
14752044 ATAGTAAGTC
14752054 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
14752082 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
14752110 CGCACACTTAGTGC
1 CGCACACTTAGTGC
14752124 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:14763636 original size:20 final size:20
Alignment explanation
Indices: 14763608--14763646 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
14763598 TTTGTCTTTG
14763608 GATTAATAAATATGAATGTT
1 GATTAATAAATATGAATGTT
* * *
14763628 GATTTATAAGTTTGAATGT
1 GATTAATAAATATGAATGT
14763647 GGTAATTAGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.18, T:0.44
Consensus pattern (20 bp):
GATTAATAAATATGAATGTT
Found at i:14768847 original size:59 final size:58
Alignment explanation
Indices: 14768761--14768932 Score: 236
Period size: 59 Copynumber: 2.9 Consensus size: 58
14768751 TAGATCATAG
* *
14768761 AATCACATGCCTCTCAACAGGGATACTCAAATGCACTCAGACCCTAGCATGTATCACAT
1 AATCACATGCCTCTCAACAGGGCTACTCAAAAGCAC-CAGACCCTAGCATGTATCACAT
* * ** * *
14768820 ATTCATATGCCTCTCAATGGGGCTACTCAAAAACACCTGAACCCTAGCATGTATCACAT
1 AATCACATGCCTCTCAACAGGGCTACTCAAAAGCACCAG-ACCCTAGCATGTATCACAT
*
14768879 AATCACATGCCTCTCAACAGGGCTACTCAAAAGCACCCAGACCCTAGCGTGTAT
1 AATCACATGCCTCTCAACAGGGCTACTCAAAAGCA-CCAGACCCTAGCATGTAT
14768933 TACGTATCAA
Statistics
Matches: 96, Mismatches: 15, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
58 2 0.02
59 91 0.95
60 3 0.03
ACGTcount: A:0.33, C:0.31, G:0.15, T:0.22
Consensus pattern (58 bp):
AATCACATGCCTCTCAACAGGGCTACTCAAAAGCACCAGACCCTAGCATGTATCACAT
Found at i:14772244 original size:37 final size:37
Alignment explanation
Indices: 14772189--14772313 Score: 223
Period size: 37 Copynumber: 3.4 Consensus size: 37
14772179 TTACGAAGTT
*
14772189 ATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
*
14772226 ATCGGGTCTTACCAGGACATAATCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
*
14772263 ATCGGGTCTTACCCGGACATAATCTCCACATGTAGTC
1 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
14772300 ATCGGGTCTTACCC
1 ATCGGGTCTTACCC
14772314 AGAATATATT
Statistics
Matches: 84, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 84 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (37 bp):
ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
Found at i:14772517 original size:48 final size:48
Alignment explanation
Indices: 14772463--14772902 Score: 790
Period size: 48 Copynumber: 9.1 Consensus size: 48
14772453 ACACATCGCC
* *
14772463 TACATATTTCACAATAGCCATTCGGTTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
14772511 TACATATTTCACATTAGCCATTCGGCTTTACTACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
14772559 TATATATATTCACATTAACCATTCGGCTTTACCACATATACATATCTCA
1 TACATAT-TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
14772608 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
14772656 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
*
14772706 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
14772754 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
14772802 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
14772850 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
14772898 TACAT
1 TACAT
14772903 CAATTTCAGC
Statistics
Matches: 378, Mismatches: 11, Indels: 6
0.96 0.03 0.02
Matches are distributed among these distances:
48 286 0.76
49 45 0.12
50 47 0.12
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:14772792 original size:146 final size:146
Alignment explanation
Indices: 14772463--14772902 Score: 805
Period size: 146 Copynumber: 3.0 Consensus size: 146
14772453 ACACATCGCC
* *
14772463 TACATATTTCACAATAGCCATTCGGTTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
* *
14772528 CCATTCGGCTTTACTACATATACATATCTCATATATATA-TTCACATTAACCATTCGGCTTTACC
66 CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGCTTTACC
14772592 ACATATACATATCTCA
131 ACATATACATATCTCA
14772608 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
14772673 CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGCTTTACC
66 CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGCTTTACC
14772738 ACATATACATATCTCA
131 ACATATACATATCTCA
14772754 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
*
14772819 CCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACC
66 CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGCTTTACC
*
14772882 ACATATACATATCTTA
131 ACATATACATATCTCA
14772898 TACAT
1 TACAT
14772903 CAATTTCAGC
Statistics
Matches: 288, Mismatches: 6, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
144 52 0.18
145 101 0.35
146 135 0.47
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (146 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGCTTTACC
ACATATACATATCTCA
Found at i:14776709 original size:23 final size:23
Alignment explanation
Indices: 14776683--14776746 Score: 59
Period size: 23 Copynumber: 3.0 Consensus size: 23
14776673 TCACTAGCAT
14776683 GAATGCTCTTCGGGACTTAGCCC
1 GAATGCTCTTCGGGACTTAGCCC
* * *
14776706 GAAT-AT-ATC---AC-TAGCAC
1 GAATGCTCTTCGGGACTTAGCCC
14776723 GAATGCTCTTCGGGACTTAGCCC
1 GAATGCTCTTCGGGACTTAGCCC
14776746 G
1 G
14776747 GATATATATA
Statistics
Matches: 29, Mismatches: 6, Indels: 12
0.62 0.13 0.26
Matches are distributed among these distances:
17 9 0.31
18 3 0.10
19 2 0.07
21 2 0.07
22 3 0.10
23 10 0.34
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (23 bp):
GAATGCTCTTCGGGACTTAGCCC
Found at i:14776753 original size:40 final size:40
Alignment explanation
Indices: 14776366--14776752 Score: 594
Period size: 40 Copynumber: 9.7 Consensus size: 40
14776356 CCAGCATGAT
* *
14776366 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
* * * *
14776406 TGCTCTTCGGGACTTAACCCTGATATAACTCTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
* * * *
14776446 TGCTCTTTGAGACTTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
* *
14776486 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
* *
14776526 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
14776566 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
* *
14776606 TGCTCTTCGGGGCTTAGCCCGGATATAGCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
* *
14776646 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
* *
14776686 TGCTCTTCGGGACTTAGCCCGAATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
14776726 TGCTCTTCGGGACTTAGCCCGGATATA
1 TGCTCTTCGGGACTTAGCCCGGATATA
14776753 TATAACTCTC
Statistics
Matches: 319, Mismatches: 28, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 319 1.00
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
Found at i:14778068 original size:37 final size:37
Alignment explanation
Indices: 14778009--14778154 Score: 247
Period size: 37 Copynumber: 3.9 Consensus size: 37
14777999 AGCTCAGATG
* * *
14778009 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGATA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
14778046 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
14778083 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
14778120 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
14778155 ATATATTTCC
Statistics
Matches: 105, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:14778356 original size:48 final size:48
Alignment explanation
Indices: 14778301--14778741 Score: 738
Period size: 48 Copynumber: 9.1 Consensus size: 48
14778291 ACACATCGCC
*
14778301 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
**
14778349 TACATATTTCACATTAGCCATTCGGCTTTATAACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
14778399 TATATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
14778447 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
14778495 TACATATTTCACATTAGCCATTCGGCTTTACCACATATAGATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
14778545 TATATATTTCACATTAACCATTCGGATTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
14778593 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
14778641 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
14778689 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
14778737 TACAT
1 TACAT
14778742 CAATTTCAGC
Statistics
Matches: 368, Mismatches: 21, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
48 280 0.76
50 88 0.24
ACGTcount: A:0.33, C:0.25, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:14778426 original size:98 final size:96
Alignment explanation
Indices: 14778301--14778741 Score: 738
Period size: 98 Copynumber: 4.6 Consensus size: 96
14778291 ACACATCGCC
*
14778301 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
**
14778366 CCATTCGGCTTTATAACATATACATATCTCATA
66 CCATTCGGCTTTACCACATATACATATCTC--A
* *
14778399 TATATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
14778464 CCATTCGGCTTTACCACATATACATATCTCA
66 CCATTCGGCTTTACCACATATACATATCTCA
* *
14778495 TACATATTTCACATTAGCCATTCGGCTTTACCACATATAGATATCTCATATATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATT
* *
14778560 AACCATTCGGATTTACCACATATACATATCTCA
64 AGCCATTCGGCTTTACCACATATACATATCTCA
*
14778593 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
14778658 CCATTCGGCTTTACCACATATACATATCTCA
66 CCATTCGGCTTTACCACATATACATATCTCA
* *
14778689 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTTATACAT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
14778742 CAATTTCAGC
Statistics
Matches: 322, Mismatches: 19, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
96 141 0.44
98 181 0.56
ACGTcount: A:0.33, C:0.25, G:0.06, T:0.36
Consensus pattern (96 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATACATATCTCA
Found at i:14778480 original size:146 final size:146
Alignment explanation
Indices: 14778301--14778741 Score: 778
Period size: 146 Copynumber: 3.0 Consensus size: 146
14778291 ACACATCGCC
*
14778301 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
**
14778366 CCATTCGGCTTTATAACATATACATATCTCATATATATATTTCACATTAACCATTCGGCTTTACC
66 CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATTCGGCTTTACC
14778431 ACATATACATATCTCA
131 ACATATACATATCTCA
14778447 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
* *
14778512 CCATTCGGCTTTACCACATATAGATATCTCATATATATATTTCACATTAACCATTCGGATTTACC
66 CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATTCGGCTTTACC
14778577 ACATATACATATCTCA
131 ACATATACATATCTCA
*
14778593 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
* * *
14778658 CCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGCCATTCAGCTTTACC
66 CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATTCGGCTTTACC
*
14778721 ACATATACATATCTTA
131 ACATATACATATCTCA
14778737 TACAT
1 TACAT
14778742 CAATTTCAGC
Statistics
Matches: 283, Mismatches: 12, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
144 49 0.17
146 234 0.83
ACGTcount: A:0.33, C:0.25, G:0.06, T:0.36
Consensus pattern (146 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATTCGGCTTTACC
ACATATACATATCTCA
Found at i:14781139 original size:14 final size:14
Alignment explanation
Indices: 14781120--14781152 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
14781110 ATGAATGATG
*
14781120 ATGTCATAAACAGA
1 ATGTCAGAAACAGA
14781134 ATGTCAGAAACAGA
1 ATGTCAGAAACAGA
14781148 ATGTC
1 ATGTC
14781153 TGGGTTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.45, C:0.15, G:0.18, T:0.21
Consensus pattern (14 bp):
ATGTCAGAAACAGA
Found at i:14790463 original size:14 final size:14
Alignment explanation
Indices: 14790444--14790476 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
14790434 TTAGGTTGAG
14790444 AAAATAATTTAATT
1 AAAATAATTTAATT
14790458 AAAATAATTTAATT
1 AAAATAATTTAATT
14790472 AAAAT
1 AAAAT
14790477 TAATAACATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
AAAATAATTTAATT
Found at i:14794941 original size:24 final size:24
Alignment explanation
Indices: 14794909--14794955 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
14794899 ATTTCAAGCC
14794909 AAGCTGAATCATTTTTATAACTAT
1 AAGCTGAATCATTTTTATAACTAT
14794933 AAGCTGAATCATTTTTATAACTA
1 AAGCTGAATCATTTTTATAACTA
14794956 GGGCAGCCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.38, C:0.13, G:0.09, T:0.40
Consensus pattern (24 bp):
AAGCTGAATCATTTTTATAACTAT
Found at i:14796159 original size:4 final size:4
Alignment explanation
Indices: 14796143--14796188 Score: 65
Period size: 4 Copynumber: 11.0 Consensus size: 4
14796133 TGGTTTACCG
*
14796143 ATTT ATTT CATTT ATTT ATTT ATTT ATTT TTGTT ATTT ATTT ATTT
1 ATTT ATTT -ATTT ATTT ATTT ATTT ATTT AT-TT ATTT ATTT ATTT
14796189 TTATTCCTCT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
4 31 0.82
5 7 0.18
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.74
Consensus pattern (4 bp):
ATTT
Found at i:14796167 original size:21 final size:21
Alignment explanation
Indices: 14796143--14796188 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
14796133 TGGTTTACCG
14796143 ATTTATTTCAT-TTATTTATTT
1 ATTTATTT-ATGTTATTTATTT
*
14796164 ATTTATTTTTGTTATTTATTT
1 ATTTATTTATGTTATTTATTT
14796185 ATTT
1 ATTT
14796189 TTATTCCTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 1 0.04
21 22 0.96
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.74
Consensus pattern (21 bp):
ATTTATTTATGTTATTTATTT
Found at i:14796189 original size:17 final size:16
Alignment explanation
Indices: 14796143--14796190 Score: 69
Period size: 17 Copynumber: 2.9 Consensus size: 16
14796133 TGGTTTACCG
*
14796143 ATTTATTTCATTTATTT
1 ATTTATTT-ATTTTTTT
14796160 ATTTATTTATTTTTGTT
1 ATTTATTTATTTTT-TT
14796177 ATTTATTTATTTTT
1 ATTTATTTATTTTT
14796191 ATTCCTCTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
16 5 0.17
17 24 0.83
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.75
Consensus pattern (16 bp):
ATTTATTTATTTTTTT
Found at i:14796596 original size:11 final size:10
Alignment explanation
Indices: 14796542--14796601 Score: 52
Period size: 10 Copynumber: 5.9 Consensus size: 10
14796532 TTTTTGAAAT
14796542 TTATTAAAAA
1 TTATTAAAAA
*
14796552 TTTTATAAAAA
1 TTAT-TAAAAA
*
14796563 ATA-TAAAAA
1 TTATTAAAAA
*
14796572 TTA-TACATAA
1 TTATTA-AAAA
14796582 TTATTTAAAAA
1 TTA-TTAAAAA
14796593 TTATTAAAA
1 TTATTAAAA
14796602 TGATAATAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
9 10 0.25
10 15 0.38
11 13 0.32
12 2 0.05
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (10 bp):
TTATTAAAAA
Found at i:14796602 original size:30 final size:28
Alignment explanation
Indices: 14796557--14796630 Score: 76
Period size: 28 Copynumber: 2.6 Consensus size: 28
14796547 AAAAATTTTA
* * *
14796557 TAAAAAATATAAAAATTATACATAATTATT
1 TAAAAAATATTAAAATGATA-ATAA-AATT
*
14796587 TAAAAATTATTAAAATGATAATAAAATT
1 TAAAAAATATTAAAATGATAATAAAATT
* *
14796615 TTAAAACTATTAAAAT
1 TAAAAAATATTAAAAT
14796631 CTGTTATAAC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 17 0.45
29 4 0.11
30 17 0.45
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.36
Consensus pattern (28 bp):
TAAAAAATATTAAAATGATAATAAAATT
Found at i:14813637 original size:12 final size:12
Alignment explanation
Indices: 14813620--14813644 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14813610 ATGACATTTT
14813620 GGTGTATTCTAA
1 GGTGTATTCTAA
14813632 GGTGTATTCTAA
1 GGTGTATTCTAA
14813644 G
1 G
14813645 TCTGAGGACG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.28, T:0.40
Consensus pattern (12 bp):
GGTGTATTCTAA
Found at i:14820843 original size:14 final size:15
Alignment explanation
Indices: 14820806--14820853 Score: 55
Period size: 14 Copynumber: 3.3 Consensus size: 15
14820796 ATGATTAGTC
14820806 TATAATTATAATAAA
1 TATAATTATAATAAA
*
14820821 TATGA-TATAATAAA
1 TATAATTATAATAAA
*
14820835 TA-AATTATAGTAAAA
1 TATAATTATAAT-AAA
14820850 TATA
1 TATA
14820854 CCTGAGATTC
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
13 1 0.04
14 16 0.59
15 9 0.33
16 1 0.04
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (15 bp):
TATAATTATAATAAA
Found at i:14822045 original size:9 final size:9
Alignment explanation
Indices: 14822016--14822131 Score: 72
Period size: 9 Copynumber: 12.1 Consensus size: 9
14822006 ATAATAGTTT
*
14822016 TTTTTGTAA
1 TTTTTATAA
*
14822025 TTTTTA-AT
1 TTTTTATAA
*
14822033 TTTTTATCA
1 TTTTTATAA
*
14822042 TTTTAATAA
1 TTTTTATAA
14822051 TTTTTATATGA
1 TTTTTATA--A
*
14822062 TTATGTATAA
1 TT-TTTATAA
*
14822072 CTTTTTTATAG
1 --TTTTTATAA
14822083 TTTTTATAA
1 TTTTTATAA
14822092 TTTTTAATAA
1 TTTTT-ATAA
*
14822102 TTTTTCTTTAA
1 -TTTT-TATAA
* *
14822113 TTTCTAAAA
1 TTTTTATAA
14822122 TTTTTATAA
1 TTTTTATAA
14822131 T
1 T
14822132 ACGTTCATAT
Statistics
Matches: 81, Mismatches: 17, Indels: 18
0.70 0.15 0.16
Matches are distributed among these distances:
8 7 0.09
9 43 0.53
10 8 0.10
11 15 0.19
12 8 0.10
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.63
Consensus pattern (9 bp):
TTTTTATAA
Found at i:14822055 original size:10 final size:10
Alignment explanation
Indices: 14822022--14822106 Score: 56
Period size: 10 Copynumber: 8.8 Consensus size: 10
14822012 GTTTTTTTTG
14822022 TAATTTTTAA
1 TAATTTTTAA
14822032 T--TTTTT-A
1 TAATTTTTAA
*
14822039 TCA-TTTTAA
1 TAATTTTTAA
14822048 TAATTTTTATA
1 TAATTTTTA-A
* *
14822059 TGATTATGT-A
1 TAATT-TTTAA
*
14822069 TAACTTTTTTA
1 TAA-TTTTTAA
*
14822080 TAGTTTTT-A
1 TAATTTTTAA
14822089 TAATTTTTAA
1 TAATTTTTAA
14822099 TAATTTTT
1 TAATTTTT
14822107 CTTTAATTTC
Statistics
Matches: 59, Mismatches: 7, Indels: 18
0.70 0.08 0.21
Matches are distributed among these distances:
7 2 0.03
8 9 0.15
9 11 0.19
10 25 0.42
11 10 0.17
12 2 0.03
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.64
Consensus pattern (10 bp):
TAATTTTTAA
Found at i:14822233 original size:27 final size:26
Alignment explanation
Indices: 14822203--14822289 Score: 79
Period size: 27 Copynumber: 3.3 Consensus size: 26
14822193 TTTCAATAAA
14822203 TTATAATAGTTTATATTTTTTTATATT
1 TTATAATA-TTTATATTTTTTTATATT
* * **
14822230 TTATAATATATTGTCTTAATTTA-A-T
1 TTATAATAT-TTATATTTTTTTATATT
*
14822255 TTATAATATTTATAGTTTTTTATCAGTT
1 TTATAATATTTATATTTTTTTAT-A-TT
14822283 TTATAAT
1 TTATAAT
14822290 TTTCTAGATT
Statistics
Matches: 46, Mismatches: 9, Indels: 9
0.72 0.14 0.14
Matches are distributed among these distances:
24 8 0.17
25 10 0.22
26 3 0.07
27 17 0.37
28 8 0.17
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (26 bp):
TTATAATATTTATATTTTTTTATATT
Found at i:14822373 original size:31 final size:30
Alignment explanation
Indices: 14822328--14822417 Score: 101
Period size: 31 Copynumber: 3.0 Consensus size: 30
14822318 TTTTTAGGCT
* ** **
14822328 TAAATAATTGAAAATTCAATTAAGTTCTTG
1 TAAATAATTAAAAATTCAATTAAGCCCTCA
14822358 TAAAGTAATTAAAAATT-AATTAAGCCCTCA
1 TAAA-TAATTAAAAATTCAATTAAGCCCTCA
*
14822388 TAAAATAATTAAAAAGTCAATTAAGCCCTC
1 T-AAATAATTAAAAATTCAATTAAGCCCTC
14822418 CATACCAACA
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
30 25 0.49
31 26 0.51
ACGTcount: A:0.48, C:0.12, G:0.08, T:0.32
Consensus pattern (30 bp):
TAAATAATTAAAAATTCAATTAAGCCCTCA
Found at i:14824957 original size:28 final size:27
Alignment explanation
Indices: 14824909--14824961 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
14824899 ATCTACTTTT
* * *
14824909 TTTTTCTCATTTTGTTTTTAATTTTAC
1 TTTTTATCACTTTATTTTTAATTTTAC
14824936 TTTTTATCACTTTATTTCTTAATTTT
1 TTTTTATCACTTTATTT-TTAATTTT
14824962 CAAATTTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 14 0.64
28 8 0.36
ACGTcount: A:0.17, C:0.11, G:0.02, T:0.70
Consensus pattern (27 bp):
TTTTTATCACTTTATTTTTAATTTTAC
Found at i:14834361 original size:230 final size:230
Alignment explanation
Indices: 14833950--14834412 Score: 827
Period size: 230 Copynumber: 2.0 Consensus size: 230
14833940 CCCATCCATT
*
14833950 TAAACGGTTTCAAACTTTATCTAACACAAAGGAGAAAGTATTCCTCCCAACCCTATGATGAAAGA
1 TAAACGGTTTCAAACTTTATCTAACACAAAAGAGAAAGTATTCCTCCCAACCCTATGATGAAAGA
*
14834015 GAAGCATACCAAGGTAAACTCCCAAGTCCTCCACTCTAGTGAAACCCAACTTTGCACTTATTTCA
66 AAAGCATACCAAGGTAAACTCCCAAGTCCTCCACTCTAGTGAAACCCAACTTTGCACTTATTTCA
* ** *
14834080 TTAGTTGCTAAATCTGACACATTGTTTGAGAAAAATACCTGCGTCTTTTGTCTATTGACTTTATG
131 TTAGCTGCTAAATCTGACACATTACTTGAGAAAAATACCTGCGTCTTTTGTCTATTAACTTTATG
14834145 ACCAGAGAACCAACAGAAACTCTCCAACACAATTC
196 ACCAGAGAACCAACAGAAACTCTCCAACACAATTC
14834180 TAAACGGTTTCAAACTTTATCTAACACAAAAGAGAAAGTATTCCTCCCAACCCTATGATGAAAGA
1 TAAACGGTTTCAAACTTTATCTAACACAAAAGAGAAAGTATTCCTCCCAACCCTATGATGAAAGA
*
14834245 AAAGCATACCAAGGTAAACTCCCAAGTCCTCCACTCTAGTGAAACCTAACTTTGCACTTATTTCA
66 AAAGCATACCAAGGTAAACTCCCAAGTCCTCCACTCTAGTGAAACCCAACTTTGCACTTATTTCA
* *
14834310 TTAGCTGCTAAATCTGACACATTACTTGAGAAAAATACCTGTGTTTTTTGTCTATTAACTTTATG
131 TTAGCTGCTAAATCTGACACATTACTTGAGAAAAATACCTGCGTCTTTTGTCTATTAACTTTATG
* *
14834375 ACCAGAGAACTAACAGAAACTCTCCAACACATTTC
196 ACCAGAGAACCAACAGAAACTCTCCAACACAATTC
14834410 TAA
1 TAA
14834413 GACAATCTGC
Statistics
Matches: 222, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
230 222 1.00
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.28
Consensus pattern (230 bp):
TAAACGGTTTCAAACTTTATCTAACACAAAAGAGAAAGTATTCCTCCCAACCCTATGATGAAAGA
AAAGCATACCAAGGTAAACTCCCAAGTCCTCCACTCTAGTGAAACCCAACTTTGCACTTATTTCA
TTAGCTGCTAAATCTGACACATTACTTGAGAAAAATACCTGCGTCTTTTGTCTATTAACTTTATG
ACCAGAGAACCAACAGAAACTCTCCAACACAATTC
Found at i:14852245 original size:159 final size:158
Alignment explanation
Indices: 14851890--14852262 Score: 441
Period size: 158 Copynumber: 2.4 Consensus size: 158
14851880 TAAATAGCTC
* *
14851890 GTTAATGGATATGTTCATTGCAAGCCATGATGATCATTATTCAGACATGTTCTTGAGTCTGCCAT
1 GTTAATGGATAAGTTCATTGCAAGCCATGATGATCATTATTCAGACATGTTCTTTAGTCTGCCAT
* *
14851955 GTAAGGATAAGTTTAGTTAGCTGTAGTGATGGCATTTTAACCATTTTTTATCCTTTAAGGATAAA
66 GTAAGGATAAGTTTAGTTAGATGTAGTGATGACATTTTAACCATTTTTTATCCTTTAAGGATAAA
* * * * *
14852020 TTTAGTCTGCCTTGAAAGGATAAGTTTA
131 TTCAGACTGACGTGAAAGGATAAGTCTA
* * **
14852048 CTTAATGGATAAGTTCATTGCAAGCCATGATGATCATTATGCAGACATGTTCTTTAGTCTGCTTT
1 GTTAATGGATAAGTTCATTGCAAGCCATGATGATCATTATTCAGACATGTTCTTTAGTCTGCCAT
* * ** *
14852113 GTAAGGATAAG-TT-GTTGGATGTAGTGATGACATTTTGACCATTTTTTATCCATTCTTTTGGCT
66 GTAAGGATAAGTTTAGTTAGATGTAGTGATGACATTTTAACCATTTTTTATCC--T-TTAAGGAT
* * * *
14852176 CATAGTTCAGACATGAGGT-AAAGTAT-TG-CTA
128 -A-AATTCAGAC-TGACGTGAAAGGATAAGTCTA
* *
14852207 GTTAATGGATAAGTACATTGCAAGCCATGATGATCATTATTCAGACATGTTTTTTA
1 GTTAATGGATAAGTTCATTGCAAGCCATGATGATCATTATTCAGACATGTTCTTTA
14852263 ACCTGTCATG
Statistics
Matches: 183, Mismatches: 26, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
156 34 0.19
157 2 0.01
158 71 0.39
159 59 0.32
160 2 0.01
161 12 0.07
162 3 0.02
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.39
Consensus pattern (158 bp):
GTTAATGGATAAGTTCATTGCAAGCCATGATGATCATTATTCAGACATGTTCTTTAGTCTGCCAT
GTAAGGATAAGTTTAGTTAGATGTAGTGATGACATTTTAACCATTTTTTATCCTTTAAGGATAAA
TTCAGACTGACGTGAAAGGATAAGTCTA
Found at i:14854399 original size:30 final size:30
Alignment explanation
Indices: 14854363--14854425 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
14854353 ATTTAACAAG
*
14854363 CAAATGCCTCTAAAATAATAATAAAATTAA
1 CAAATGCCTCTAAAATAATAAAAAAATTAA
*
14854393 CAAATGCCTTTAAAATAATAAAAAAATTAA
1 CAAATGCCTCTAAAATAATAAAAAAATTAA
14854423 CAA
1 CAA
14854426 TAAAATAAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.59, C:0.13, G:0.03, T:0.25
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAAAAAAATTAA
Found at i:14862611 original size:16 final size:17
Alignment explanation
Indices: 14862572--14862611 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
14862562 AAATAAATTA
14862572 AACTAAATTGAATAAAC
1 AACTAAATTGAATAAAC
14862589 AGA--AAATTGAA-AAAC
1 A-ACTAAATTGAATAAAC
14862604 AACTAAAT
1 AACTAAAT
14862612 CATAATATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 7
0.74 0.00 0.26
Matches are distributed among these distances:
14 1 0.05
15 5 0.25
16 12 0.60
17 1 0.05
18 1 0.05
ACGTcount: A:0.62, C:0.10, G:0.07, T:0.20
Consensus pattern (17 bp):
AACTAAATTGAATAAAC
Found at i:14869671 original size:6 final size:6
Alignment explanation
Indices: 14869660--14869684 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
14869650 CATTTCCATG
14869660 TCATTT TCATTT TCATTT TCATTT T
1 TCATTT TCATTT TCATTT TCATTT T
14869685 GGAGAAAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (6 bp):
TCATTT
Found at i:14869733 original size:62 final size:62
Alignment explanation
Indices: 14869661--14869792 Score: 196
Period size: 62 Copynumber: 2.1 Consensus size: 62
14869651 ATTTCCATGT
* *
14869661 CATTTTCATTTTCATTTTC-ATTTTGGAGAAAACCACATTCATTTCCAAATGATTCAT-TTCTC
1 CATTTTCATTTTCA-TTTCAATTGTGGAGAAAACCACAGTCATTTCCAAATG-TTCATATTCTC
* *
14869723 CATTTTCATTTTCATTTCAATTGTGGAGAAAACCATAGTCATTTCCAAATGTTCCTATTCTC
1 CATTTTCATTTTCATTTCAATTGTGGAGAAAACCACAGTCATTTCCAAATGTTCATATTCTC
14869785 CATTTTCA
1 CATTTTCA
14869793 CCATTTCTGT
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
61 8 0.12
62 56 0.88
ACGTcount: A:0.27, C:0.21, G:0.08, T:0.44
Consensus pattern (62 bp):
CATTTTCATTTTCATTTCAATTGTGGAGAAAACCACAGTCATTTCCAAATGTTCATATTCTC
Found at i:14870565 original size:11 final size:11
Alignment explanation
Indices: 14870551--14870631 Score: 53
Period size: 11 Copynumber: 7.3 Consensus size: 11
14870541 AACATTAAAT
*
14870551 TTAATTTAATA
1 TTAAATTAATA
14870562 TTAAATTAATA
1 TTAAATTAATA
*
14870573 --AAA-TACTA
1 TTAAATTAATA
*
14870581 TTAAAATAAGTA
1 TTAAATTAA-TA
14870593 TTAAATTTAAT-
1 TTAAA-TTAATA
14870604 TTAATATTAAATTA
1 TTAA-ATT-AA-TA
*
14870618 TTAAAATAATA
1 TTAAATTAATA
14870629 TTA
1 TTA
14870632 TTTTTGGAAT
Statistics
Matches: 56, Mismatches: 5, Indels: 18
0.71 0.06 0.23
Matches are distributed among these distances:
8 4 0.07
9 3 0.05
10 3 0.05
11 23 0.41
12 13 0.23
13 6 0.11
14 4 0.07
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (11 bp):
TTAAATTAATA
Found at i:14870609 original size:37 final size:35
Alignment explanation
Indices: 14870562--14870631 Score: 88
Period size: 37 Copynumber: 1.9 Consensus size: 35
14870552 TAATTTAATA
14870562 TTAAATTAATA-AAATACTATTAAAATAAGTATTAAAT
1 TTAAATTAATATAAAT--TATTAAAATAA-TATTAAAT
*
14870599 TTAATTTAATATTAAATTATTAAAATAATATTA
1 TTAAATTAATA-TAAATTATTAAAATAATATTA
14870632 TTTTTGGAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
36 5 0.17
37 21 0.70
39 4 0.13
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (35 bp):
TTAAATTAATATAAATTATTAAAATAATATTAAAT
Found at i:14877249 original size:38 final size:38
Alignment explanation
Indices: 14877168--14877318 Score: 176
Period size: 38 Copynumber: 3.9 Consensus size: 38
14877158 GAATCCAGTC
* * * *
14877168 ACCAGCACAAAGCCTGCGGAACTTTAAGCCCGGATATAGT
1 ACCAGTACGAAGCCTGCGGGA-TTTAA-CCCGGATATATT
* *
14877208 ACCAGTACTATGCCTGCGGGATTTAACCCGGATATATT
1 ACCAGTACGAAGCCTGCGGGATTTAACCCGGATATATT
* *
14877246 ACCAGCACGAAGCCTGCAGGATTTAACCCGGATATATT
1 ACCAGTACGAAGCCTGCGGGATTTAACCCGGATATATT
* ** *
14877284 ACCAGTACGAAGCCTACTAGACTTAACCCGGATAT
1 ACCAGTACGAAGCCTGCGGGATTTAACCCGGATAT
14877319 GTATCGAGTG
Statistics
Matches: 97, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
38 75 0.77
39 5 0.05
40 17 0.18
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.22
Consensus pattern (38 bp):
ACCAGTACGAAGCCTGCGGGATTTAACCCGGATATATT
Found at i:14877288 original size:76 final size:78
Alignment explanation
Indices: 14877168--14877318 Score: 200
Period size: 76 Copynumber: 2.0 Consensus size: 78
14877158 GAATCCAGTC
* * * * *
14877168 ACCAGCACAAAGCCTGCGGAACTTTAAGCCCGGATATAGTACCAGTACTATGCCTGCGGGATTTA
1 ACCAGCACAAAGCCTGCGGAACTTTAAGCCCGGATATAGTACCAGTACGAAGCCTACGAGACTTA
14877233 ACCCGGATATATT
66 ACCCGGATATATT
* * *
14877246 ACCAGCACGAAGCCTGCAGG-A-TTTAA-CCCGGATATATTACCAGTACGAAGCCTACTAGACTT
1 ACCAGCACAAAGCCTGC-GGAACTTTAAGCCCGGATATAGTACCAGTACGAAGCCTACGAGACTT
14877308 AACCCGGATAT
65 AACCCGGATAT
14877319 GTATCGAGTG
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
76 40 0.62
77 5 0.08
78 17 0.27
79 2 0.03
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.22
Consensus pattern (78 bp):
ACCAGCACAAAGCCTGCGGAACTTTAAGCCCGGATATAGTACCAGTACGAAGCCTACGAGACTTA
ACCCGGATATATT
Found at i:14884902 original size:38 final size:38
Alignment explanation
Indices: 14884781--14884971 Score: 229
Period size: 38 Copynumber: 4.9 Consensus size: 38
14884771 GAATCCAGTC
* *
14884781 ACCAGCACAAAGCCTGCGGAACTTTAAGCTCGGATATAGT
1 ACCAGCACAAAGCCTGCGGGA-TTTAA-CCCGGATATAGT
*
14884821 ACCAGCACAAAGCCTGCGGAACTTTAAGCCCGGATATAGT
1 ACCAGCACAAAGCCTGCGGGA-TTTAA-CCCGGATATAGT
* *
14884861 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATATT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAGT
* * * *
14884899 ACCAGCACGAAGTCTGCGGGATTTAACCTGGATATATT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAGT
* * * *
14884937 ACCAGCACGAAGCCTGGGGGACTTAACCTGGATAT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATAT
14884972 GTATCGAGTG
Statistics
Matches: 141, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
38 78 0.55
39 5 0.04
40 58 0.41
ACGTcount: A:0.30, C:0.25, G:0.24, T:0.21
Consensus pattern (38 bp):
ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAGT
Found at i:14887975 original size:30 final size:30
Alignment explanation
Indices: 14887934--14888002 Score: 79
Period size: 30 Copynumber: 2.4 Consensus size: 30
14887924 AAAATCATAT
* * * *
14887934 TTTGGCAAAATTATATTTTTGTCCCTAAAC
1 TTTGTCAAAATTACACTTTTGCCCCTAAAC
*
14887964 TTTGTCAAAATTACACTTTTGCCCCTAGAC
1 TTTGTCAAAATTACACTTTTGCCCCTAAAC
14887994 -TTGT-AAAAT
1 TTTGTCAAAAT
14888003 AGTTTTTATT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
28 5 0.15
29 4 0.12
30 25 0.74
ACGTcount: A:0.30, C:0.19, G:0.10, T:0.41
Consensus pattern (30 bp):
TTTGTCAAAATTACACTTTTGCCCCTAAAC
Found at i:14890612 original size:13 final size:13
Alignment explanation
Indices: 14890596--14890661 Score: 89
Period size: 13 Copynumber: 5.1 Consensus size: 13
14890586 TTTAAACCAA
14890596 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
* *
14890609 ACTTCTCAAAAGT
1 ACTTTTCAAAAGC
*
14890622 ACTTTTTC-ACAGC
1 AC-TTTTCAAAAGC
14890635 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
14890648 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
14890661 A
1 A
14890662 TTGCCAAACT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
12 5 0.11
13 36 0.80
14 4 0.09
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:14892661 original size:22 final size:22
Alignment explanation
Indices: 14892635--14892690 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
14892625 AACAGGGTCA
*
14892635 CACGCCTATGTGGACGCAGGGG
1 CACGCCCATGTGGACGCAGGGG
*
14892657 CACGCCCGTGTGGACGCAGGGG
1 CACGCCCATGTGGACGCAGGGG
* *
14892679 CACACCCGTGTG
1 CACGCCCATGTG
14892691 CCATCAACAC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.16, C:0.32, G:0.39, T:0.12
Consensus pattern (22 bp):
CACGCCCATGTGGACGCAGGGG
Found at i:14901959 original size:4 final size:4
Alignment explanation
Indices: 14901945--14902040 Score: 55
Period size: 4 Copynumber: 24.8 Consensus size: 4
14901935 ATTTTTCAAT
*
14901945 TTTA TTTTA TTTA -TT- TTTA TTT- TTATT TTTA TTT- TATTA TTTA -TTA
1 TTTA -TTTA TTTA TTTA TTTA TTTA TT-TA TTTA TTTA T-TTA TTTA TTTA
* * *
14901991 TTTA -TTA TTTA -TTA CTTTA TTTTA ATTA TTTA -TTA CTTA ATTA TTTA
1 TTTA TTTA TTTA TTTA -TTTA -TTTA TTTA TTTA TTTA TTTA TTTA TTTA
14902038 TTT
1 TTT
14902041 TATTATTAAT
Statistics
Matches: 74, Mismatches: 6, Indels: 23
0.72 0.06 0.22
Matches are distributed among these distances:
3 19 0.26
4 41 0.55
5 14 0.19
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (4 bp):
TTTA
Found at i:14901959 original size:22 final size:22
Alignment explanation
Indices: 14901932--14902003 Score: 74
Period size: 22 Copynumber: 3.1 Consensus size: 22
14901922 AATTTGTATT
14901932 TTTATTTTTCAATTTTA-TTTTA
1 TTTATTTTT-AATTTTATTTTTA
*
14901954 TTTATTTTTATTTTTATTTTTA
1 TTTATTTTTAATTTTATTTTTA
*
14901976 TTTTATTATTTATTATTTATTATTTA
1 -TTTATT-TTTAAT-TTTATT-TTTA
14902002 TT
1 TT
14902004 ACTTTATTTT
Statistics
Matches: 44, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
21 6 0.14
22 14 0.32
23 6 0.14
24 6 0.14
25 8 0.18
26 4 0.09
ACGTcount: A:0.22, C:0.01, G:0.00, T:0.76
Consensus pattern (22 bp):
TTTATTTTTAATTTTATTTTTA
Found at i:14901971 original size:34 final size:30
Alignment explanation
Indices: 14901923--14902024 Score: 114
Period size: 34 Copynumber: 3.1 Consensus size: 30
14901913 AGGCAGCCCA
*
14901923 ATTTGTATTTTTATTTTTCAATTTTATTTTATTT
1 ATTTTTATTTTTATTTTT--ATTTTA--TTATTT
14901957 ATTTTTATTTTTATTTTTATTTTATTATTT
1 ATTTTTATTTTTATTTTTATTTTATTATTT
14901987 ATTATTTATTATTTATTACTTTATTTTAATTATTT
1 ATT-TTTATT-TTTATT--TTTATTTT-ATTATTT
14902022 ATT
1 ATT
14902025 ACTTAATTAT
Statistics
Matches: 62, Mismatches: 1, Indels: 9
0.86 0.01 0.12
Matches are distributed among these distances:
30 9 0.15
31 6 0.10
32 12 0.19
34 25 0.40
35 10 0.16
ACGTcount: A:0.24, C:0.02, G:0.01, T:0.74
Consensus pattern (30 bp):
ATTTTTATTTTTATTTTTATTTTATTATTT
Done.