Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 47 of 250
Found at i:14901974 original size:7 final size:7
Alignment explanation
Indices: 14901930--14902000 Score: 51
Period size: 7 Copynumber: 10.3 Consensus size: 7
14901920 CCAATTTGTA
14901930 TTTTTAT
1 TTTTTAT
*
14901937 TTTTCA-
1 TTTTTAT
*
14901943 ATTTTAT
1 TTTTTAT
14901950 TTTATT-T
1 TTT-TTAT
14901957 ATTTTTA-
1 -TTTTTAT
14901964 TTTTTA-
1 TTTTTAT
14901970 TTTTTAT
1 TTTTTAT
14901977 TTTATTAT
1 TTT-TTAT
*
14901985 TTATTAT
1 TTTTTAT
*
14901992 TTATTAT
1 TTTTTAT
14901999 TT
1 TT
14902001 ATTACTTTAT
Statistics
Matches: 53, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
6 16 0.30
7 26 0.49
8 11 0.21
ACGTcount: A:0.21, C:0.01, G:0.00, T:0.77
Consensus pattern (7 bp):
TTTTTAT
Found at i:14902001 original size:7 final size:7
Alignment explanation
Indices: 14901951--14902047 Score: 102
Period size: 7 Copynumber: 14.7 Consensus size: 7
14901941 CAATTTTATT
14901951 TTATTTA
1 TTATTTA
14901958 TT-TTTA
1 TTATTTA
14901964 TT-TTTA
1 TTATTTA
14901970 TT-TTTA
1 TTATTTA
14901976 -T-TTTA
1 TTATTTA
14901981 TTATTTA
1 TTATTTA
14901988 TTATTTA
1 TTATTTA
14901995 TTATTTA
1 TTATTTA
14902002 TTACTTTA
1 TTA-TTTA
*
14902010 TT-TTAA
1 TTATTTA
14902016 TTATTTA
1 TTATTTA
*
14902023 TTACTTAA
1 TTA-TTTA
14902031 TTATTTA
1 TTATTTA
14902038 -T-TTTA
1 TTATTTA
14902043 TTATT
1 TTATT
14902048 AATAAAAAAT
Statistics
Matches: 79, Mismatches: 4, Indels: 14
0.81 0.04 0.14
Matches are distributed among these distances:
5 9 0.11
6 24 0.30
7 34 0.43
8 12 0.15
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (7 bp):
TTATTTA
Found at i:14904499 original size:10 final size:10
Alignment explanation
Indices: 14904486--14904525 Score: 62
Period size: 10 Copynumber: 4.0 Consensus size: 10
14904476 ATTTATTTTC
14904486 AATTATCTTT
1 AATTATCTTT
14904496 AATTATCTTT
1 AATTATCTTT
* *
14904506 ATTTATCTGT
1 AATTATCTTT
14904516 AATTATCTTT
1 AATTATCTTT
14904526 TAGAATTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.28, C:0.10, G:0.03, T:0.60
Consensus pattern (10 bp):
AATTATCTTT
Found at i:14910419 original size:24 final size:24
Alignment explanation
Indices: 14910392--14910460 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 24
14910382 TGAGTTGTGG
14910392 TCTGAGTTCATGATATATGTGACA
1 TCTGAGTTCATGATATATGTGACA
** * *
14910416 TCTGAACTCATTGA-GT-TGTG--G
1 TCTGAGTTCA-TGATATATGTGACA
14910437 TCTGAGTTCATGATATATGTGACA
1 TCTGAGTTCATGATATATGTGACA
14910461 CATGTTTTGG
Statistics
Matches: 32, Mismatches: 8, Indels: 10
0.64 0.16 0.20
Matches are distributed among these distances:
20 3 0.09
21 9 0.28
22 4 0.12
23 4 0.12
24 9 0.28
25 3 0.09
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.38
Consensus pattern (24 bp):
TCTGAGTTCATGATATATGTGACA
Found at i:14910433 original size:45 final size:44
Alignment explanation
Indices: 14910371--14910460 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 44
14910361 GAACTATGTG
14910371 ATCTAAACTCATGAGTTGTGGTCTGAGTTCATGATATATGTGAC
1 ATCTAAACTCATGAGTTGTGGTCTGAGTTCATGATATATGTGAC
*
14910415 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGAC
1 ATCTAAACTCA-TGAGTTGTGGTCTGAGTTCATGATATATGTGAC
14910460 A
1 A
14910461 CATGTTTTGG
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
44 10 0.23
45 34 0.77
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (44 bp):
ATCTAAACTCATGAGTTGTGGTCTGAGTTCATGATATATGTGAC
Found at i:14911995 original size:18 final size:20
Alignment explanation
Indices: 14911932--14911984 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
14911922 ACAGAGAGTT
* *
14911932 ACACGGGTGTGTCCCAAGCC
1 ACACGGGCGTGTGCCAAGCC
14911952 ACACGGGCGTGTGCCAAGCC
1 ACACGGGCGTGTGCCAAGCC
14911972 ACACGGGCGTGTG
1 ACACGGGCGTGTG
14911985 TGACCACACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.19, C:0.32, G:0.36, T:0.13
Consensus pattern (20 bp):
ACACGGGCGTGTGCCAAGCC
Found at i:14915967 original size:37 final size:37
Alignment explanation
Indices: 14915923--14915997 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
14915913 TAAATGGATC
14915923 AAGTATATTTTCGTCTACCAGAGATGTCTAGAGAGAG
1 AAGTATATTTTCGTCTACCAGAGATGTCTAGAGAGAG
14915960 AAGTATATTTTCGTCTACCAGAGATGTCTAGAGAGAG
1 AAGTATATTTTCGTCTACCAGAGATGTCTAGAGAGAG
14915997 A
1 A
14915998 TCGGAGAATG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.29
Consensus pattern (37 bp):
AAGTATATTTTCGTCTACCAGAGATGTCTAGAGAGAG
Found at i:14935561 original size:23 final size:23
Alignment explanation
Indices: 14935535--14935579 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
14935525 TCTAAAACAA
*
14935535 TTTAAT-TTTTTTCTTTTTATTTC
1 TTTAATATTTTTTC-CTTTATTTC
*
14935558 TTTATTATTTTTTCCTTTATTT
1 TTTAATATTTTTTCCTTTATTT
14935580 TTCTCTCTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.13, C:0.09, G:0.00, T:0.78
Consensus pattern (23 bp):
TTTAATATTTTTTCCTTTATTTC
Found at i:14937851 original size:7 final size:7
Alignment explanation
Indices: 14937839--14937863 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14937829 AAATTTTAAT
14937839 TTTAACC
1 TTTAACC
14937846 TTTAACC
1 TTTAACC
14937853 TTTAACC
1 TTTAACC
14937860 TTTA
1 TTTA
14937864 GACACAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.24, G:0.00, T:0.48
Consensus pattern (7 bp):
TTTAACC
Found at i:14938055 original size:21 final size:20
Alignment explanation
Indices: 14938031--14938097 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 20
14938021 GCCCTCATGT
14938031 TTTTTGGTAATCCGTTACATA
1 TTTTTGGTAATCC-TTACATA
* *
14938052 TTTTT-GTATTTCTT-CATA
1 TTTTTGGTAATCCTTACATA
*
14938070 TTTTATGGTAATCCCTCACA-A
1 TTTT-TGGTAAT-CCTTACATA
14938091 TTTTTGG
1 TTTTTGG
14938098 CATTTGCTCA
Statistics
Matches: 37, Mismatches: 5, Indels: 9
0.73 0.10 0.18
Matches are distributed among these distances:
18 8 0.22
19 3 0.08
20 12 0.32
21 12 0.32
22 2 0.05
ACGTcount: A:0.21, C:0.15, G:0.12, T:0.52
Consensus pattern (20 bp):
TTTTTGGTAATCCTTACATA
Found at i:14938562 original size:40 final size:40
Alignment explanation
Indices: 14938504--14938593 Score: 94
Period size: 40 Copynumber: 2.2 Consensus size: 40
14938494 CGCTTATAGT
* * * *
14938504 TTTTTTGATAAACTCTCATATATTT-TGGTATGT-CCTTATA
1 TTTTTTGGTAAACCCTCATAT-TTTCTAGTA-GTCCCTTACA
* *
14938544 TTTTTTGGTAACCCCTCATGTTTTCTAGTAGTCCCTTACA
1 TTTTTTGGTAAACCCTCATATTTTCTAGTAGTCCCTTACA
14938584 TTTTTTGGTA
1 TTTTTTGGTA
14938594 TTTCTTCATT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
39 5 0.12
40 37 0.88
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.51
Consensus pattern (40 bp):
TTTTTTGGTAAACCCTCATATTTTCTAGTAGTCCCTTACA
Found at i:14938668 original size:20 final size:21
Alignment explanation
Indices: 14938624--14938669 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
14938614 AGCTCTCACA
14938624 ATTTTTGGTATATACTTATCT
1 ATTTTTGGTATATACTTATCT
*
14938645 -TTTTTGGTA-AT-CTTGTCAT
1 ATTTTTGGTATATACTTATC-T
14938664 ATTTTT
1 ATTTTT
14938670 TTATATTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
18 5 0.23
19 3 0.14
20 14 0.64
ACGTcount: A:0.20, C:0.09, G:0.11, T:0.61
Consensus pattern (21 bp):
ATTTTTGGTATATACTTATCT
Found at i:14939111 original size:20 final size:20
Alignment explanation
Indices: 14939051--14939198 Score: 77
Period size: 20 Copynumber: 7.2 Consensus size: 20
14939041 TCATCTTTTA
*
14939051 TTTGGTAATTCCTCATAATT
1 TTTGGTAATTCCTCATATTT
* * *
14939071 TTTGGTATTTTCTCATCTTT
1 TTTGGTAATTCCTCATATTT
* *
14939091 TTTGGTAATCCCTCATGTTTTT
1 TTTGGTAATTCCTCA--TATTT
** *
14939113 TTTGGTAAAAGCTCTCAAATTT
1 TTTGGT-AATTC-CTCATATTT
*
14939135 TTTGGT-GTATCCTCATATTT
1 TTTGGTAAT-TCCTCATATTT
* * *
14939155 CTT-GT-ATGCCCTCATGTTT
1 TTTGGTAAT-TCCTCATATTT
* * *
14939174 TCTGGTAATTCATCATATAT
1 TTTGGTAATTCCTCATATTT
14939194 TTTGG
1 TTTGG
14939199 CATCTCTTTA
Statistics
Matches: 93, Mismatches: 28, Indels: 14
0.69 0.21 0.10
Matches are distributed among these distances:
19 13 0.14
20 51 0.55
21 3 0.03
22 19 0.20
23 3 0.03
24 4 0.04
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (20 bp):
TTTGGTAATTCCTCATATTT
Found at i:14969618 original size:21 final size:22
Alignment explanation
Indices: 14969566--14969620 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
14969556 TAAATAATTT
* *
14969566 TTAATAAAATAAAATATATTAG
1 TTAATAAATTAAAATATATAAG
*
14969588 TTAATGAATTAAAA-A-ATAAG
1 TTAATAAATTAAAATATATAAG
14969608 TATAATAAATTAA
1 T-TAATAAATTAA
14969621 GAACCAATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
20 5 0.18
21 11 0.39
22 12 0.43
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (22 bp):
TTAATAAATTAAAATATATAAG
Found at i:14979180 original size:32 final size:29
Alignment explanation
Indices: 14979144--14979214 Score: 79
Period size: 32 Copynumber: 2.3 Consensus size: 29
14979134 TTTAATTGAT
*
14979144 TTTTTAAAAATTTTAAAAATATATGTTTATAA
1 TTTTTAAAAATTTTAAAAAT-GAT-TTTAT-A
* **
14979176 TTTTTACACTTTTTAAAAATGATTTTATA
1 TTTTTAAAAATTTTAAAAATGATTTTATA
14979205 TTTTTAAAAA
1 TTTTTAAAAA
14979215 AATTAATTTT
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
29 8 0.25
30 5 0.16
31 2 0.06
32 17 0.53
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (29 bp):
TTTTTAAAAATTTTAAAAATGATTTTATA
Found at i:14991062 original size:28 final size:28
Alignment explanation
Indices: 14991022--14991100 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
14991012 GCAATCAAAT
* * *
14991022 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
14991050 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
14991078 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
14991101 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:15001563 original size:22 final size:20
Alignment explanation
Indices: 15001537--15001581 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 20
15001527 GATTTGTGTG
* *
15001537 TTTTATTATTGTTTTTATGATA
1 TTTTATAATAGTTTTT-T-ATA
15001559 TTTTATAATAGTTTTTTATA
1 TTTTATAATAGTTTTTTATA
15001579 TTT
1 TTT
15001582 AAAATAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 6 0.29
21 1 0.05
22 14 0.67
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (20 bp):
TTTTATAATAGTTTTTTATA
Found at i:15001893 original size:114 final size:114
Alignment explanation
Indices: 15001495--15001893 Score: 366
Period size: 117 Copynumber: 3.5 Consensus size: 114
15001485 TTTTTATATA
* ** * * * *
15001495 TTTTATTAAGTTTAAGTTTATATTAGAA-GTATGATTTGTGTGTTTTATTATTGTTTTTATGATA
1 TTTTATT-AGTTTAAGTTTGTATTA-AATGTATGATTAATTTGTTTTATTAATGTTTTTGTGGTA
* * * *
15001559 TTTTATAATAGTTTTTT-ATATTTAA---AATA-AATATTTTT-TTGTTATG
64 TCTTATATTAGTTTTTTCGTATTTAAGGGAA-AGGATATTTTTGTTGTTATG
* * * * * *
15001605 TTTTATTAGATTTAGGTTTGTATTAAATGTATGACTAGTTTGTTTTGTTAATGTTATTGTTGTAT
1 TTTTATTAG-TTTAAGTTTGTATTAAATGTATGATTAATTTGTTTTATTAATGTTTTTGTGGTAT
* * *
15001670 CTTATATTAGTTTTTTTCGTATTTAAGGGGAAGGATATTTTTTGTTGTTTTT
65 CTTATATTAG-TTTTTTCGTATTTAAGGGAAAGGATA-TTTTTGTTGTTATG
* * *
15001722 TTTTTTTAGTTTTAGATTTCTATTAAATGTATGATTAATTTGTTTTATTAATGTTTTTGTGGTAT
1 TTTTATTAGTTTAAG-TTTGTATTAAATGTATGATTAATTTGTTTTATTAATGTTTTTGTGGTAT
*** * * *
15001787 CTTATATTAG-TTTTTCGTATTTACTTGAAATGTTATTTTCTGTTGTTGTG
65 CTTATATTAGTTTTTTCGTATTTAAGGGAAAGGATATTTT-TGTTGTTATG
* * *
15001837 TTTTATTAGCTTTAAGTTTGTATT-TAGGTTTGATTAATTTGTTTTATTAATGTTTTT
1 TTTTATTAG-TTTAAGTTTGTATTAAATGTATGATTAATTTGTTTTATTAATGTTTTT
15001894 AAAGAATCTT
Statistics
Matches: 235, Mismatches: 41, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
109 4 0.02
110 56 0.24
111 6 0.03
112 7 0.03
114 35 0.15
115 46 0.20
116 14 0.06
117 67 0.29
ACGTcount: A:0.23, C:0.02, G:0.15, T:0.59
Consensus pattern (114 bp):
TTTTATTAGTTTAAGTTTGTATTAAATGTATGATTAATTTGTTTTATTAATGTTTTTGTGGTATC
TTATATTAGTTTTTTCGTATTTAAGGGAAAGGATATTTTTGTTGTTATG
Found at i:15002201 original size:18 final size:19
Alignment explanation
Indices: 15002173--15002208 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
15002163 AAATTTGTGG
*
15002173 AATTATTTTTTAGTTGACC
1 AATTATTTTTTAATTGACC
15002192 AATT-TTTTTTAATTGAC
1 AATTATTTTTTAATTGAC
15002209 AGCATGAGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.28, C:0.08, G:0.08, T:0.56
Consensus pattern (19 bp):
AATTATTTTTTAATTGACC
Found at i:15006189 original size:5 final size:5
Alignment explanation
Indices: 15006179--15006215 Score: 65
Period size: 5 Copynumber: 7.2 Consensus size: 5
15006169 AATAAGTCAT
15006179 TATAA TATAA TATAA TATAA TATAA TATAA TGATAA T
1 TATAA TATAA TATAA TATAA TATAA TATAA T-ATAA T
15006216 TATTATATGT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 26 0.84
6 5 0.16
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:15006672 original size:23 final size:23
Alignment explanation
Indices: 15006641--15006696 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 23
15006631 AGAGTTTTTT
*
15006641 TAAACATTTA-TACAAATTTTTAA
1 TAAAAATTTATTA-AAATTTTTAA
*
15006664 -AAAATATTTATTAATATTTTTAA
1 TAAAA-ATTTATTAAAATTTTTAA
15006687 TAAAAATTTA
1 TAAAAATTTA
15006697 AAGAAATTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
22 3 0.11
23 19 0.68
24 6 0.21
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (23 bp):
TAAAAATTTATTAAAATTTTTAA
Found at i:15014762 original size:26 final size:27
Alignment explanation
Indices: 15014733--15014792 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 27
15014723 ATCCTCTCTC
*
15014733 AAGCCATATAA-CAGGAAGGTCACAAA
1 AAGCCATATAATCAGGAAGCTCACAAA
*
15014759 AAGCCAT-TAATCGGGAAGCTCACAAA
1 AAGCCATATAATCAGGAAGCTCACAAA
*
15014785 GAG-CATAT
1 AAGCCATAT
15014793 TAGGAAGCTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 6 0.21
26 23 0.79
ACGTcount: A:0.45, C:0.20, G:0.20, T:0.15
Consensus pattern (27 bp):
AAGCCATATAATCAGGAAGCTCACAAA
Found at i:15016021 original size:18 final size:18
Alignment explanation
Indices: 15015953--15016021 Score: 57
Period size: 18 Copynumber: 3.8 Consensus size: 18
15015943 TATCAATATC
*
15015953 ATTCAGTAACGATCAATT
1 ATTCAGTAACAATCAATT
* * * * *
15015971 GTTTAGTGACAATTAGTT
1 ATTCAGTAACAATCAATT
*
15015989 ATTCAGTATCAATCAATT
1 ATTCAGTAACAATCAATT
* *
15016007 ATTTAGTAACTATCA
1 ATTCAGTAACAATCA
15016022 GTGTCATTCA
Statistics
Matches: 36, Mismatches: 15, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.39
Consensus pattern (18 bp):
ATTCAGTAACAATCAATT
Found at i:15016892 original size:17 final size:17
Alignment explanation
Indices: 15016863--15016903 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
15016853 AACCCTTAAA
*
15016863 TTTTCCTTTTTTCTTTC
1 TTTTCCTTTTTTCATTC
15016880 TTTT-CTTTCTTTCATTC
1 TTTTCCTTT-TTTCATTC
15016897 -TTTCCTT
1 TTTTCCTT
15016904 CCCCTGTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.02, C:0.24, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTCCTTTTTTCATTC
Found at i:15017164 original size:17 final size:18
Alignment explanation
Indices: 15017144--15017178 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
15017134 ATAAATATCT
15017144 TTTATAAATAA-TAAATA
1 TTTATAAATAATTAAATA
*
15017161 TTTATTAATAATTAAATA
1 TTTATAAATAATTAAATA
15017179 CATGTATTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
TTTATAAATAATTAAATA
Found at i:15020272 original size:12 final size:12
Alignment explanation
Indices: 15020255--15020280 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
15020245 GTGGTTTTGT
15020255 GACCACATGGGC
1 GACCACATGGGC
15020267 GACCACATGGGC
1 GACCACATGGGC
15020279 GA
1 GA
15020281 TCATACGGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.31, G:0.35, T:0.08
Consensus pattern (12 bp):
GACCACATGGGC
Found at i:15024635 original size:19 final size:21
Alignment explanation
Indices: 15024592--15024636 Score: 53
Period size: 19 Copynumber: 2.3 Consensus size: 21
15024582 AATTCAAAAA
*
15024592 AATAAAAAATTATTAATAATT
1 AATAAAAAATTATTAAAAATT
15024613 --TAAAAAA-TA-TAAAAATT
1 AATAAAAAATTATTAAAAATT
15024630 AATAAAA
1 AATAAAA
15024637 TGCACATCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 6
0.75 0.04 0.21
Matches are distributed among these distances:
17 7 0.33
18 2 0.10
19 12 0.57
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (21 bp):
AATAAAAAATTATTAAAAATT
Found at i:15025078 original size:32 final size:32
Alignment explanation
Indices: 15025016--15025078 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 32
15025006 TAATAAAAAA
* *
15025016 TGAATCTAGACATACATTTGTTTCGATTCATC
1 TGAATCTAGACATACATTTGTTACAATTCATC
15025048 TGAATCTAGACA-ATCATTTG-TACAAGTTCAT
1 TGAATCTAGACATA-CATTTGTTACAA-TTCAT
15025079 TTTAGATGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
31 4 0.15
32 23 0.85
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (32 bp):
TGAATCTAGACATACATTTGTTACAATTCATC
Found at i:15026556 original size:30 final size:31
Alignment explanation
Indices: 15026509--15026578 Score: 99
Period size: 30 Copynumber: 2.3 Consensus size: 31
15026499 ATAAGAAATG
15026509 AATTTAAAATAAATAATGTA-AAAAAAAAAGA
1 AATTTAAAATAAATAATGTACAAAAAAAAA-A
* *
15026540 AATTTAATAT-AATAATGTACACAAAAAAAA
1 AATTTAAAATAAATAATGTACAAAAAAAAAA
15026570 AATTTAAAA
1 AATTTAAAA
15026579 ATAGAGTATA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
30 18 0.51
31 17 0.49
ACGTcount: A:0.67, C:0.03, G:0.04, T:0.26
Consensus pattern (31 bp):
AATTTAAAATAAATAATGTACAAAAAAAAAA
Found at i:15036462 original size:12 final size:12
Alignment explanation
Indices: 15036445--15036485 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
15036435 TAATAGTTGA
15036445 TAATAAAAAAGT
1 TAATAAAAAAGT
15036457 TAATAAATAAA-T
1 TAATAAA-AAAGT
*
15036469 AAAT-AAAAAGT
1 TAATAAAAAAGT
15036480 TAATAA
1 TAATAA
15036486 TAATTAAGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
10 3 0.12
11 6 0.25
12 12 0.50
13 3 0.12
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (12 bp):
TAATAAAAAAGT
Found at i:15038027 original size:6 final size:6
Alignment explanation
Indices: 15038018--15038050 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
15038008 TTAAATTAAA
15038018 AATTTT AATTTT AA-TTT AATTTT AATTTT AATT
1 AATTTT AATTTT AATTTT AATTTT AATTTT AATT
15038051 ATAAAAATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (6 bp):
AATTTT
Found at i:15038037 original size:11 final size:12
Alignment explanation
Indices: 15038018--15038050 Score: 59
Period size: 11 Copynumber: 2.8 Consensus size: 12
15038008 TTAAATTAAA
15038018 AATTTTAATTTT
1 AATTTTAATTTT
15038030 AA-TTTAATTTT
1 AATTTTAATTTT
15038041 AATTTTAATT
1 AATTTTAATT
15038051 ATAAAAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 11 0.55
12 9 0.45
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
AATTTTAATTTT
Found at i:15038040 original size:17 final size:17
Alignment explanation
Indices: 15038018--15038050 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
15038008 TTAAATTAAA
15038018 AATTTTAATTTTAATTT
1 AATTTTAATTTTAATTT
15038035 AATTTTAATTTTAATT
1 AATTTTAATTTTAATT
15038051 ATAAAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
AATTTTAATTTTAATTT
Found at i:15038348 original size:38 final size:38
Alignment explanation
Indices: 15038306--15038382 Score: 95
Period size: 38 Copynumber: 2.0 Consensus size: 38
15038296 ATTTAAAATC
15038306 TTTAAAA-ATAATACAAAT-TATAGAAAATAAAAAAATTA
1 TTTAAAAGATAATA-AAATATATA-AAAATAAAAAAATTA
* * *
15038344 TTTAAAAGATTATAAAATATATAAAAGTGAAAAAATTA
1 TTTAAAAGATAATAAAATATATAAAAATAAAAAAATTA
15038382 T
1 T
15038383 AAAATTATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
38 25 0.74
39 9 0.26
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.31
Consensus pattern (38 bp):
TTTAAAAGATAATAAAATATATAAAAATAAAAAAATTA
Found at i:15038370 original size:19 final size:18
Alignment explanation
Indices: 15038346--15038396 Score: 50
Period size: 19 Copynumber: 2.8 Consensus size: 18
15038336 AAAAATTATT
15038346 TAAAAGATTATAAAATATA
1 TAAAAGATTATAAAAT-TA
* *
15038365 TAAAAG-TGAAAAAATTA
1 TAAAAGATTATAAAATTA
*
15038382 TAAAATTATTATAAA
1 TAAAA-GATTATAAA
15038397 TGGAAAAATA
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
17 7 0.28
18 7 0.28
19 11 0.44
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (18 bp):
TAAAAGATTATAAAATTA
Found at i:15038383 original size:26 final size:25
Alignment explanation
Indices: 15038347--15038465 Score: 75
Period size: 26 Copynumber: 4.6 Consensus size: 25
15038337 AAAATTATTT
*
15038347 AAAAGATTATAAAATATATAAAAGTG
1 AAAAAATTATAAAATATATAAAA-TG
15038373 AAAAAATTATAAAAT-TATTATAAATG
1 AAAAAATTATAAAATATA-TA-AAATG
* * * *
15038399 GAAAAA-TATAAATTATTAAAAAATT
1 AAAAAATTATAAAATA-TATAAAATG
* *
15038424 AAAATAA-CAAAAAAGTATATAAATTATG
1 AAAA-AATTATAAAA-TATATAAA--ATG
15038452 AAAAAATT-TAAAAT
1 AAAAAATTATAAAAT
15038466 TTTTTATAAA
Statistics
Matches: 71, Mismatches: 13, Indels: 18
0.70 0.13 0.18
Matches are distributed among these distances:
25 16 0.23
26 36 0.51
27 13 0.18
28 6 0.08
ACGTcount: A:0.64, C:0.01, G:0.06, T:0.29
Consensus pattern (25 bp):
AAAAAATTATAAAATATATAAAATG
Found at i:15038427 original size:24 final size:26
Alignment explanation
Indices: 15038347--15038420 Score: 82
Period size: 26 Copynumber: 2.9 Consensus size: 26
15038337 AAAATTATTT
* *
15038347 AAAAGATTATAAAA-TATATAAAAGTGA
1 AAAA-ATTATAAAATTAT-TAAAAATGG
*
15038374 AAAAATTATAAAATTATTATAAATGG
1 AAAAATTATAAAATTATTAAAAATGG
15038400 AAAAA-TAT-AAATTATTAAAAA
1 AAAAATTATAAAATTATTAAAAA
15038421 ATTAAAATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
24 12 0.29
25 3 0.07
26 20 0.48
27 7 0.17
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.30
Consensus pattern (26 bp):
AAAAATTATAAAATTATTAAAAATGG
Found at i:15038620 original size:21 final size:21
Alignment explanation
Indices: 15038596--15038637 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
15038586 TCACAAAATT
15038596 TATAGAAA-AGTACAAAAAAAA
1 TATAGAAATA-TACAAAAAAAA
* *
15038617 TATATAAATATATAAAAAAAA
1 TATAGAAATATACAAAAAAAA
15038638 GTCTAAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.71, C:0.02, G:0.05, T:0.21
Consensus pattern (21 bp):
TATAGAAATATACAAAAAAAA
Found at i:15039001 original size:18 final size:18
Alignment explanation
Indices: 15038980--15039077 Score: 51
Period size: 18 Copynumber: 5.3 Consensus size: 18
15038970 TCATATTCTT
*
15038980 TTTTATATTTTTATAATA
1 TTTTATAATTTTATAATA
15038998 TTTTTAATACAATTTTA-AATA
1 -TTTT-AT--AATTTTATAATA
15039019 TTTTCATAATTTTA-AA-A
1 TTTT-ATAATTTTATAATA
* * *
15039036 TTTTTTATTTTTCATAA-C
1 TTTTATAATTTT-ATAATA
* **
15039054 TTATATAATTTTATGCTA
1 TTTTATAATTTTATAATA
15039072 TTTTAT
1 TTTTAT
15039078 TTTTTTTGTT
Statistics
Matches: 61, Mismatches: 12, Indels: 13
0.71 0.14 0.15
Matches are distributed among these distances:
16 6 0.10
17 8 0.13
18 25 0.41
19 4 0.07
20 8 0.13
21 4 0.07
22 6 0.10
ACGTcount: A:0.34, C:0.05, G:0.01, T:0.60
Consensus pattern (18 bp):
TTTTATAATTTTATAATA
Found at i:15039039 original size:26 final size:26
Alignment explanation
Indices: 15039008--15039066 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
15038998 TTTTTAATAC
*
15039008 AATTTTAAATATTTTCATAA-TTTTAA
1 AATTTTAAAT-TTTTCATAACTTATAA
** *
15039034 AATTTTTTATTTTTCATAACTTATAT
1 AATTTTAAATTTTTCATAACTTATAA
15039060 AATTTTA
1 AATTTTA
15039067 TGCTATTTTA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
25 9 0.33
26 18 0.67
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (26 bp):
AATTTTAAATTTTTCATAACTTATAA
Found at i:15039116 original size:19 final size:20
Alignment explanation
Indices: 15039094--15039143 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
15039084 TGTTTTTTTC
15039094 AATTTTTAATAATTTAT-AT
1 AATTTTTAATAATTTATAAT
** *
15039113 AATTTTTTGTCATTTATAAT
1 AATTTTTAATAATTTATAAT
15039133 AATTTTATAAT
1 AATTTT-TAAT
15039144 GTTTGCATTT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
19 14 0.58
20 8 0.33
21 2 0.08
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (20 bp):
AATTTTTAATAATTTATAAT
Found at i:15039119 original size:20 final size:21
Alignment explanation
Indices: 15039096--15039143 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 21
15039086 TTTTTTTCAA
15039096 TTTTTAATAATTTAT-ATAAT
1 TTTTTAATAATTTATAATAAT
* *
15039116 TTTTT-GTCATTTATAATAAT
1 TTTTTAATAATTTATAATAAT
*
15039136 TTTATAAT
1 TTTTTAAT
15039144 GTTTGCATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
19 7 0.32
20 14 0.64
21 1 0.05
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (21 bp):
TTTTTAATAATTTATAATAAT
Found at i:15039141 original size:28 final size:29
Alignment explanation
Indices: 15039086--15039143 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
15039076 ATTTTTTTTG
*
15039086 TTTTTTTCAATTTTTAATAATTTATATAA
1 TTTTTTTCAATTTATAATAATTTATATAA
15039115 TTTTTTGTC-ATTTATAATAATTT-TATAA
1 TTTTTT-TCAATTTATAATAATTTATATAA
15039143 T
1 T
15039144 GTTTGCATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 6 0.22
29 19 0.70
30 2 0.07
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (29 bp):
TTTTTTTCAATTTATAATAATTTATATAA
Found at i:15039163 original size:26 final size:28
Alignment explanation
Indices: 15039095--15039164 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 28
15039085 GTTTTTTTCA
*
15039095 ATTTTTAATAATTTATATAATTTTTTGTC
1 ATTTTTAATAATTT-TATAATTGTTTGTC
*
15039124 ATTTATAATAATTTTATAA-TGTTTG-C
1 ATTTTTAATAATTTTATAATTGTTTGTC
15039150 ATTTTT-ATATATTTT
1 ATTTTTAATA-ATTTT
15039165 CTAGTTTTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
25 3 0.08
26 11 0.30
27 5 0.14
28 5 0.14
29 13 0.35
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.61
Consensus pattern (28 bp):
ATTTTTAATAATTTTATAATTGTTTGTC
Found at i:15039694 original size:6 final size:6
Alignment explanation
Indices: 15039687--15039725 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
15039677 TCTTTTTCCC
* * *
15039687 TCTCCC TCTTCT TCTCCT TCTCCT TCTCCT TCTTCT TCT
1 TCTCCT TCTCCT TCTCCT TCTCCT TCTCCT TCTCCT TCT
15039726 TCATATTCTC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (6 bp):
TCTCCT
Found at i:15039702 original size:12 final size:12
Alignment explanation
Indices: 15039687--15039725 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
15039677 TCTTTTTCCC
*
15039687 TCTCCCTCTTCT
1 TCTCCTTCTTCT
*
15039699 TCTCCTTCTCCT
1 TCTCCTTCTTCT
15039711 TCTCCTTCTTCT
1 TCTCCTTCTTCT
15039723 TCT
1 TCT
15039726 TCATATTCTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (12 bp):
TCTCCTTCTTCT
Found at i:15041187 original size:19 final size:18
Alignment explanation
Indices: 15041155--15041196 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
15041145 AGATAGAAAC
15041155 GAAACAAAAAAAAAGAGA
1 GAAACAAAAAAAAAGAGA
* *
15041173 GAAAGAAAAAGAAAAGGGA
1 GAAACAAAAA-AAAAGAGA
15041192 GAAAC
1 GAAAC
15041197 GAGAAAGACG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.71, C:0.05, G:0.24, T:0.00
Consensus pattern (18 bp):
GAAACAAAAAAAAAGAGA
Found at i:15041187 original size:23 final size:23
Alignment explanation
Indices: 15041143--15041187 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
15041133 ATAAAGATAG
* *
15041143 AAAGATAGAAACGAAACAAAAAA
1 AAAGAGAGAAACGAAAAAAAAAA
*
15041166 AAAGAGAGAAA-GAAAAAGAAAA
1 AAAGAGAGAAACGAAAAAAAAAA
15041188 GGGAGAAACG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.76, C:0.04, G:0.18, T:0.02
Consensus pattern (23 bp):
AAAGAGAGAAACGAAAAAAAAAA
Found at i:15048875 original size:4 final size:4
Alignment explanation
Indices: 15048866--15048890 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
15048856 ATACAATCTA
15048866 TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT T
15048891 CTCCTCTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:15055283 original size:22 final size:22
Alignment explanation
Indices: 15055258--15055299 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
15055248 AATTTAGCCA
* *
15055258 TTTTTTATTTTTATTTTAATAT
1 TTTTTTATTTTAAATTTAATAT
*
15055280 TTTTTTGTTTTAAATTTAAT
1 TTTTTTATTTTAAATTTAAT
15055300 TGTTACATTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (22 bp):
TTTTTTATTTTAAATTTAATAT
Found at i:15059132 original size:3 final size:3
Alignment explanation
Indices: 15059126--15059264 Score: 92
Period size: 3 Copynumber: 46.7 Consensus size: 3
15059116 TATTATGTTG
*
15059126 TTA TTA -TA TTCA TT- TTA TTA TTA TTA TTA TTA CTA TTA TTA TTA
1 TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * *
15059170 TTA TTA TTA TTA TTA GTA GTG TTG TTT TTA TT- TCTA TTA CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
* * *
15059215 TTA TTA GTA TTG TGT- TTA TTA TGT- TTC TTA -TA TTTA TTA TTA TTA
1 TTA TTA TTA TTA T-TA TTA TTA T-TA TTA TTA TTA -TTA TTA TTA TTA
*
15059260 CTA TT
1 TTA TT
15059265 GTTAATCTTA
Statistics
Matches: 110, Mismatches: 15, Indels: 22
0.75 0.10 0.15
Matches are distributed among these distances:
2 9 0.08
3 93 0.85
4 8 0.07
ACGTcount: A:0.27, C:0.04, G:0.06, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:15059201 original size:36 final size:36
Alignment explanation
Indices: 15059159--15059236 Score: 106
Period size: 36 Copynumber: 2.2 Consensus size: 36
15059149 TTATTATTAC
*
15059159 TATTATTAT-TATTATTATTATTATTAGTAGTGTTGTT
1 TATTATT-TCTATTACTATTATTATTAGTAGTG-TGTT
*
15059196 T-TTATTTCTATTACTATTATTATTAGTATTGTGTT
1 TATTATTTCTATTACTATTATTATTAGTAGTGTGTT
15059231 TATTAT
1 TATTAT
15059237 GTTTCTTATA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
35 6 0.16
36 30 0.81
37 1 0.03
ACGTcount: A:0.26, C:0.03, G:0.09, T:0.63
Consensus pattern (36 bp):
TATTATTTCTATTACTATTATTATTAGTAGTGTGTT
Found at i:15060846 original size:21 final size:20
Alignment explanation
Indices: 15060811--15060851 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
15060801 TCAACCACTG
15060811 ATTTATTTTAGTTTTCTATTT
1 ATTTATTTTAGTTTT-TATTT
15060832 ATTTATTTTTA-TTTTTATTT
1 ATTTA-TTTTAGTTTTTATTT
15060852 CCAATTTTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.26
21 9 0.47
22 5 0.26
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (20 bp):
ATTTATTTTAGTTTTTATTT
Found at i:15065675 original size:22 final size:23
Alignment explanation
Indices: 15065650--15065714 Score: 71
Period size: 22 Copynumber: 2.8 Consensus size: 23
15065640 TATTGAAAAT
*
15065650 ACATGTTCATAATATATA-TAAA
1 ACATATTCATAATATATATTAAA
15065672 ACATATAT-ATAATATAATATTAAA
1 ACATAT-TCATAATAT-ATATTAAA
*
15065696 ACATTTTACATAATATATA
1 ACATATT-CATAATATATA
15065715 CACATATAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
22 12 0.33
23 5 0.14
24 12 0.33
25 7 0.19
ACGTcount: A:0.52, C:0.08, G:0.02, T:0.38
Consensus pattern (23 bp):
ACATATTCATAATATATATTAAA
Found at i:15065708 original size:25 final size:23
Alignment explanation
Indices: 15065657--15065712 Score: 69
Period size: 25 Copynumber: 2.4 Consensus size: 23
15065647 AATACATGTT
15065657 CATAATAT-ATATAAAACATATA
1 CATAATATAATATAAAACATATA
* *
15065679 TATAATATAATATTAAAACATTTTA
1 CATAATATAATA-TAAAACA-TATA
15065704 CATAATATA
1 CATAATATA
15065713 TACACATATA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
22 7 0.25
23 3 0.11
24 7 0.25
25 11 0.39
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (23 bp):
CATAATATAATATAAAACATATA
Found at i:15065790 original size:21 final size:23
Alignment explanation
Indices: 15065760--15065805 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 23
15065750 ATTAATAATA
15065760 ATACTAATAT-TACA-TAAAGAT
1 ATACTAATATATACATTAAAGAT
* *
15065781 ATACTTATATATATATTAAAGAT
1 ATACTAATATATACATTAAAGAT
15065804 AT
1 AT
15065806 GTGCATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 9 0.43
22 3 0.14
23 9 0.43
ACGTcount: A:0.50, C:0.07, G:0.04, T:0.39
Consensus pattern (23 bp):
ATACTAATATATACATTAAAGAT
Found at i:15065879 original size:21 final size:21
Alignment explanation
Indices: 15065854--15065907 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
15065844 AATATATACG
15065854 TAATATGTATAATA-AAAATAA
1 TAATATGTATAATATAAAA-AA
** *
15065875 TAATATACATAATATATAAAA
1 TAATATGTATAATATAAAAAA
15065896 TATATATGTATA
1 TA-ATATGTATA
15065908 TAACAAAACA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
21 16 0.62
22 10 0.38
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (21 bp):
TAATATGTATAATATAAAAAA
Found at i:15066305 original size:3 final size:3
Alignment explanation
Indices: 15066299--15066356 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
15066289 ATAAAAGCAC
15066299 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
15066347 ATA ATA ATA A
1 ATA ATA ATA A
15066357 GAAGAAGAAG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:15069081 original size:7 final size:7
Alignment explanation
Indices: 15069069--15069097 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
15069059 TCTCTGCATA
15069069 TATAAAT
1 TATAAAT
15069076 TATAAAT
1 TATAAAT
15069083 TATAAAT
1 TATAAAT
15069090 TATAAAT
1 TATAAAT
15069097 T
1 T
15069098 GATCAAATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (7 bp):
TATAAAT
Found at i:15072312 original size:25 final size:25
Alignment explanation
Indices: 15072249--15072306 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
15072239 TATGTGGTGG
15072249 CTTTGTGGAAAATTCTCTAAAAAGC
1 CTTTGTGGAAAATTCTCTAAAAAGC
* *
15072274 TTTTATGGAAAATTCTCTAAAAAGC
1 CTTTGTGGAAAATTCTCTAAAAAGC
15072299 CTTTGTGG
1 CTTTGTGG
15072307 TGAATTATTC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (25 bp):
CTTTGTGGAAAATTCTCTAAAAAGC
Found at i:15074629 original size:25 final size:25
Alignment explanation
Indices: 15074591--15074674 Score: 125
Period size: 25 Copynumber: 3.4 Consensus size: 25
15074581 TTTATGTGGT
15074591 GCCTTTGTGACAAATTCTCTAAAAA
1 GCCTTTGTGACAAATTCTCTAAAAA
* *
15074616 GCTTTTGTGGCAAATTCTCTAAAAA
1 GCCTTTGTGACAAATTCTCTAAAAA
*
15074641 GCCTTTGTGATAAACTT-TCTAAAAA
1 GCCTTTGTGACAAA-TTCTCTAAAAA
15074666 GCCTTTGTG
1 GCCTTTGTG
15074675 GTGAATTATT
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
25 51 0.96
26 2 0.04
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (25 bp):
GCCTTTGTGACAAATTCTCTAAAAA
Found at i:15077563 original size:41 final size:41
Alignment explanation
Indices: 15077506--15077588 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
15077496 ACCCAAACTG
15077506 ATTATCATAAGTACATTTCCCCATTCAATCAGTCATATTAT
1 ATTATCATAAGTACATTTCCCCATTCAATCAGTCATATTAT
15077547 ATTATCATAAGTACATTTCCCCATTCAATCAGTCATATTAT
1 ATTATCATAAGTACATTTCCCCATTCAATCAGTCATATTAT
15077588 A
1 A
15077589 ATTAATATAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.35, C:0.22, G:0.05, T:0.39
Consensus pattern (41 bp):
ATTATCATAAGTACATTTCCCCATTCAATCAGTCATATTAT
Found at i:15084145 original size:22 final size:22
Alignment explanation
Indices: 15084120--15084162 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
15084110 TATCCTAACA
15084120 ATAATAACAAAATAGTAGCAAT
1 ATAATAACAAAATAGTAGCAAT
* * *
15084142 ATAATAGCGAAATGGTAGCAA
1 ATAATAACAAAATAGTAGCAA
15084163 AATAGTGGCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.53, C:0.09, G:0.16, T:0.21
Consensus pattern (22 bp):
ATAATAACAAAATAGTAGCAAT
Found at i:15084173 original size:11 final size:11
Alignment explanation
Indices: 15084127--15084175 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 11
15084117 ACAATAATAA
15084127 CAAAATAGTAG
1 CAAAATAGTAG
* *
15084138 CAATATAATAG
1 CAAAATAGTAG
* *
15084149 CGAAATGGTAG
1 CAAAATAGTAG
*
15084160 CAAAATAGTGG
1 CAAAATAGTAG
15084171 CAAAA
1 CAAAA
15084176 CAACTGATTC
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.51, C:0.10, G:0.20, T:0.18
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:15087807 original size:18 final size:18
Alignment explanation
Indices: 15087767--15087801 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
15087757 CTAGGTGCGT
15087767 ATCCTAGCCCTTATATGC
1 ATCCTAGCCCTTATATGC
15087785 ATCCTAGCCCTTATATG
1 ATCCTAGCCCTTATATG
15087802 TTTCCTTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.31, G:0.11, T:0.34
Consensus pattern (18 bp):
ATCCTAGCCCTTATATGC
Found at i:15091109 original size:37 final size:37
Alignment explanation
Indices: 15091059--15091137 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
15091049 TTATTACGAA
* * *
15091059 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
15091096 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
15091133 GTCTT
1 GTCTT
15091138 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:15091382 original size:47 final size:47
Alignment explanation
Indices: 15091256--15091690 Score: 690
Period size: 47 Copynumber: 9.1 Consensus size: 47
15091246 CCCTTCGGGA
* * * * * *
15091256 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
15091303 CCTGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15091352 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
15091399 CCAATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15091448 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15091495 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15091544 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15091591 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15091638 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15091687 CTTA
1 CTTA
15091691 CTATCATTTC
Statistics
Matches: 362, Mismatches: 18, Indels: 14
0.92 0.05 0.04
Matches are distributed among these distances:
47 190 0.52
49 172 0.48
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:15091420 original size:96 final size:96
Alignment explanation
Indices: 15091256--15091687 Score: 724
Period size: 96 Copynumber: 4.5 Consensus size: 96
15091246 CCCTTCGGGA
* * * * * * *
15091256 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
*
15091321 ACTTCCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
15091352 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGCCCAATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
15091417 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
15091448 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
15091513 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
15091544 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
15091607 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
15091638 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
15091688 TTACTATCAT
Statistics
Matches: 321, Mismatches: 13, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
94 47 0.15
96 274 0.85
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.31
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:15091571 original size:143 final size:143
Alignment explanation
Indices: 15091256--15091690 Score: 712
Period size: 143 Copynumber: 3.0 Consensus size: 143
15091246 CCCTTCGGGA
* * * * * * * *
15091256 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
15091321 ACTTCCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
*
15091384 CATCGGCGATTAGGC
129 CATCGGCCATTAGGC
**
15091399 CCAATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
15091464 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
15091529 CATCGGCCATTAGGC
129 CATCGGCCATTAGGC
15091544 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
15091609 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
15091674 TCGGCCATTAGGC
131 TCGGCCATTAGGC
15091687 CTTA
1 CTTA
15091691 CTATCATTTC
Statistics
Matches: 274, Mismatches: 14, Indels: 8
0.93 0.05 0.03
Matches are distributed among these distances:
143 191 0.70
145 83 0.30
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.31
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:15094732 original size:125 final size:126
Alignment explanation
Indices: 15094372--15094874 Score: 726
Period size: 126 Copynumber: 4.0 Consensus size: 126
15094362 TTATAGCCTA
* *
15094372 ATTTTTCTACGAACTACTGTAGCAAAAGAGCATCCACGTAGGAGCTTTTTTCAGAAATTTTGTTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCATCCACGTGGGAGCTTTTTTCAGAAATTTTGCTG
* * * *
15094437 ATAGTG---CCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAATGTCTACTTAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* ** * *
15094495 ATTTTTCTAGGAACTACTGTAGCAAAAGAGTGTCCATGTGGGAGCTTTTTTCAGAAATTTTGTTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCATCCACGTGGGAGCTTTTTTCAGAAATTTTGCTG
* *
15094560 ACAGTGTATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTTAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* * * *
15094621 ATTTTTCTACGAACTACTATAACAAAAGAGCATCTAC-TGGGAGCTTTTTTCAGAAATGTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCATCCACGTGGGAGCTTTTTTCAGAAATTTTGCTG
* * * * * *
15094685 ATAATGCATCCTACTTGAAGCGTTTTTGACATTATTTGTTCAAAAACGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* *
15094746 ATTTTTCTACAAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCATCCACGTGGGAGCTTTTTTCAGAAATTTTGCTG
* * *
15094811 ACAGTGCATCCTGCTTGAAGTGTTTTCGACACTATTTGTTCAGAAACATCTACTCAAAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
15094872 ATT
1 ATT
15094875 CTTGCAGAAA
Statistics
Matches: 336, Mismatches: 40, Indels: 5
0.88 0.10 0.01
Matches are distributed among these distances:
123 65 0.19
125 110 0.33
126 161 0.48
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (126 bp):
ATTTTTCTACGAACTACTGTAGCAAAAGAGCATCCACGTGGGAGCTTTTTTCAGAAATTTTGCTG
ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
Found at i:15094815 original size:251 final size:249
Alignment explanation
Indices: 15094372--15094874 Score: 756
Period size: 251 Copynumber: 2.0 Consensus size: 249
15094362 TTATAGCCTA
* * * *
15094372 ATTTTTCTACGAACTACTGTAGCAAAAGAGCATCCACGTAGGAGCTTTTTTCAGAAATTTTGTTG
1 ATTTTTCTACGAACTACTATAACAAAAGAGCATCCACGTAGGAGCTTTTTTCAGAAATGTTGCTG
* * * * *
15094437 ATAGTGCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAATGTCTACTTAGAATTATTTTTC
66 ATAATGCCTACTTGAAGCATTTTCGACACTATTTGTTCAAAAACGTCTACTCAGAATTATTTTTC
** * * * *
15094502 TAGGAACTACTGTAGCAAAAGAGTGTCCATGTGGGAGCTTTTTTCAGAAATTTTGTTGACAGTGT
131 TACAAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGAAATTTTGCTGACAGTGC
* * *
15094567 ATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTTAGAATT
196 ATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACATCTACTCAAAATT
* *
15094621 ATTTTTCTACGAACTACTATAACAAAAGAGCATCTAC-TGGGAGCTTTTTTCAGAAATGTTGCTG
1 ATTTTTCTACGAACTACTATAACAAAAGAGCATCCACGTAGGAGCTTTTTTCAGAAATGTTGCTG
* * *
15094685 ATAATGCATCCTACTTGAAGCGTTTTTGACATTATTTGTTCAAAAACGTCTACTCAGAATTATTT
66 ATAATG---CCTACTTGAAGCATTTTCGACACTATTTGTTCAAAAACGTCTACTCAGAATTATTT
15094750 TTCTACAAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGAAATTTTGCTGACAG
128 TTCTACAAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGAAATTTTGCTGACAG
*
15094815 TGCATCCTGCTTGAAGTGTTTTCGACACTATTTGTTCAGAAACATCTACTCAAAATT
193 TGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACATCTACTCAAAATT
15094872 ATT
1 ATT
15094875 CTTGCAGAAA
Statistics
Matches: 227, Mismatches: 24, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
248 29 0.13
249 34 0.15
251 164 0.72
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (249 bp):
ATTTTTCTACGAACTACTATAACAAAAGAGCATCCACGTAGGAGCTTTTTTCAGAAATGTTGCTG
ATAATGCCTACTTGAAGCATTTTCGACACTATTTGTTCAAAAACGTCTACTCAGAATTATTTTTC
TACAAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGAAATTTTGCTGACAGTGC
ATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACATCTACTCAAAATT
Found at i:15095417 original size:19 final size:19
Alignment explanation
Indices: 15095395--15095483 Score: 112
Period size: 19 Copynumber: 4.8 Consensus size: 19
15095385 ACGATTATGT
15095395 ATCAATTAACCCTAAATTA
1 ATCAATTAACCCTAAATTA
15095414 ATCAATTAACCCTAAATTTA
1 ATCAATTAACCCTAAA-TTA
* *
15095434 ATTAATTAACCCTAATTTA
1 ATCAATTAACCCTAAATTA
* *
15095453 ATCAA-T--CCTTAATTTA
1 ATCAATTAACCCTAAATTA
15095469 ATCAATTAACCCTAA
1 ATCAATTAACCCTAA
15095484 TACCCTAAAC
Statistics
Matches: 61, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
16 14 0.23
17 1 0.02
18 1 0.02
19 28 0.46
20 17 0.28
ACGTcount: A:0.44, C:0.20, G:0.00, T:0.36
Consensus pattern (19 bp):
ATCAATTAACCCTAAATTA
Found at i:15095467 original size:35 final size:37
Alignment explanation
Indices: 15095395--15095484 Score: 121
Period size: 35 Copynumber: 2.4 Consensus size: 37
15095385 ACGATTATGT
*
15095395 ATCAATTAACCCTAAATTAATCAATTAACCCTAAATTTA
1 ATCAATTAACCCTAATTTAATCAATT-A-CCTAAATTTA
* *
15095434 ATTAATTAACCCTAATTTAATCAA-T-CCTTAATTTA
1 ATCAATTAACCCTAATTTAATCAATTACCTAAATTTA
15095469 ATCAATTAACCCTAAT
1 ATCAATTAACCCTAAT
15095485 ACCCTAAACT
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
35 24 0.51
38 1 0.02
39 22 0.47
ACGTcount: A:0.43, C:0.20, G:0.00, T:0.37
Consensus pattern (37 bp):
ATCAATTAACCCTAATTTAATCAATTACCTAAATTTA
Found at i:15095601 original size:17 final size:17
Alignment explanation
Indices: 15095579--15095621 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
15095569 TTAAATTCTA
15095579 AACCTTAAAAAAATCC-T
1 AACCTTAAAAAAA-CCAT
15095596 AACCTTAAAAAAACCAT
1 AACCTTAAAAAAACCAT
*
15095613 AACCCTAAA
1 AACCTTAAA
15095622 TCAATTAAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 2 0.08
17 22 0.92
ACGTcount: A:0.56, C:0.26, G:0.00, T:0.19
Consensus pattern (17 bp):
AACCTTAAAAAAACCAT
Found at i:15096212 original size:20 final size:19
Alignment explanation
Indices: 15096187--15096240 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
15096177 AATATTTGAA
*
15096187 AATTTAACATAAATTTTGT
1 AATTTAACATAAATTTTAT
*
15096206 AATTTTAAC-TATATTTTAT
1 AA-TTTAACATAAATTTTAT
* *
15096225 TATTTAATATAAATTT
1 AATTTAACATAAATTT
15096241 ATTACTATTA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
18 5 0.18
19 17 0.61
20 6 0.21
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.54
Consensus pattern (19 bp):
AATTTAACATAAATTTTAT
Found at i:15096598 original size:3 final size:3
Alignment explanation
Indices: 15096590--15096646 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
15096580 ACCATGAAGG
15096590 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
15096638 GAA GAA GAA
1 GAA GAA GAA
15096647 ATGGGCTACC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:15101396 original size:43 final size:43
Alignment explanation
Indices: 15101338--15101777 Score: 389
Period size: 43 Copynumber: 10.4 Consensus size: 43
15101328 AGTTTATCCA
*
15101338 ATGATGCACTGTGTGTGCTAGTATAGTTACTTCGATTTATTCG
1 ATGATGCACTGTGTGTGCCAGTATAGTTACTTCGATTTATTCG
* * * *** *
15101381 ATGATGCGCTTTGTGTGCCAGTATAGTTGCTTTTCTTTCTTCG
1 ATGATGCACTGTGTGTGCCAGTATAGTTACTTCGATTTATTCG
* * * * * * *
15101424 ATGATGCATTATGTGTGTCAGTATAGTTACTTGGGTTTATCCA
1 ATGATGCACTGTGTGTGCCAGTATAGTTACTTCGATTTATTCG
* * * *
15101467 ATGAAGCACTGTGTGT--CAGTATAGTTATTTTGATTTATTTG
1 ATGATGCACTGTGTGTGCCAGTATAGTTACTTCGATTTATTCG
* * * *
15101508 TTGATGCACTGTGTGTGCCAGCATAGTTACTTCAAATT-TTCTG
1 ATGATGCACTGTGTGTGCCAGTATAGTTACTTCGATTTATTC-G
* *
15101551 ATGATGCAC--TGTGTGCCAGTATAATTACTTCGATTTATCCG
1 ATGATGCACTGTGTGTGCCAGTATAGTTACTTCGATTTATTCG
* * * * * *
15101592 TTGATGCATTGTGTGTGCCAGTATAGTTACTTCGGTTTCTCCA
1 ATGATGCACTGTGTGTGCCAGTATAGTTACTTCGATTTATTCG
* * * *
15101635 ATGGTGCACCGTGTGTGCCAGTATAATTACTTCAATTTA-TCTG
1 ATGATGCACTGTGTGTGCCAGTATAGTTACTTCGATTTATTC-G
* *
15101678 ATGATGCACTGTGTGTGCCAGTATAGTTA--T-GGTTT-CTCTG
1 ATGATGCACTGTGTGTGCCAGTATAGTTACTTCGATTTATTC-G
* * * *
15101718 ATGATGCACTGTGTGTGTCAATATAGTTGCTTCGATATA-TCG
1 ATGATGCACTGTGTGTGCCAGTATAGTTACTTCGATTTATTCG
*
15101760 AATGATGCGCTGTGTGTG
1 -ATGATGCACTGTGTGTG
15101778 TTCTAAAAAT
Statistics
Matches: 315, Mismatches: 69, Indels: 26
0.77 0.17 0.06
Matches are distributed among these distances:
40 33 0.10
41 65 0.21
42 7 0.02
43 210 0.67
ACGTcount: A:0.20, C:0.15, G:0.23, T:0.41
Consensus pattern (43 bp):
ATGATGCACTGTGTGTGCCAGTATAGTTACTTCGATTTATTCG
Found at i:15101524 original size:84 final size:85
Alignment explanation
Indices: 15101330--15101777 Score: 379
Period size: 84 Copynumber: 5.3 Consensus size: 85
15101320 TATGCTTCAG
* * * * *
15101330 TTTATCCAATGATGCACTGTGTGTGCTAGTATAGTTACTTCGATTTATTCGATGATGCGCTTTGT
1 TTTATCCGATGATGCACTGTGTGTGCCAGTATAGTTACTTCGATTTATCCAATGATGCAC-TTGT
* * ***
15101395 GTGCCAGTATAGTTGCTTTTC
65 GTGCCAGTATAATTACTTCGA
* * * * * * * *
15101416 TTTCTTCGATGATGCATTATGTGTGTCAGTATAGTTACTTGGGTTTATCCAATGAAGCAC-TGTG
1 TTTATCCGATGATGCACTGTGTGTGCCAGTATAGTTACTTCGATTTATCCAATGATGCACTTGTG
* * * *
15101480 TGTCAGTATAGTTATTTTGA
66 TGCCAGTATAATTACTTCGA
** * * * **
15101500 TTTATTTGTTGATGCACTGTGTGTGCCAGCATAGTTACTTCAAATTT-TCTGATGATGCAC-TGT
1 TTTATCCGATGATGCACTGTGTGTGCCAGTATAGTTACTTC-GATTTATCCAATGATGCACTTGT
15101563 GTGCCAGTATAATTACTTCGA
65 GTGCCAGTATAATTACTTCGA
* * * * * *
15101584 TTTATCCGTTGATGCATTGTGTGTGCCAGTATAGTTACTTCGGTTTCTCCAATGGTGCACCGTGT
1 TTTATCCGATGATGCACTGTGTGTGCCAGTATAGTTACTTCGATTTATCCAATGATGCA-CTTGT
*
15101649 GTGCCAGTATAATTACTTCAA
65 GTGCCAGTATAATTACTTCGA
* * * **
15101670 TTTATCTGATGATGCACTGTGTGTGCCAGTATAGTTA--T-GGTTTCTCTGATGATGCACTGTGT
1 TTTATCCGATGATGCACTGTGTGTGCCAGTATAGTTACTTCGATTTATCCAATGATGCACT-TGT
* * * *
15101732 GTGTCAATATAGTTGCTTCGA
65 GTGCCAGTATAATTACTTCGA
* *
15101753 TATAT-CGAATGATGCGCTGTGTGTG
1 TTTATCCG-ATGATGCACTGTGTGTG
15101778 TTCTAAAAAT
Statistics
Matches: 296, Mismatches: 60, Indels: 15
0.80 0.16 0.04
Matches are distributed among these distances:
82 2 0.01
83 57 0.19
84 129 0.44
85 4 0.01
86 104 0.35
ACGTcount: A:0.21, C:0.16, G:0.23, T:0.41
Consensus pattern (85 bp):
TTTATCCGATGATGCACTGTGTGTGCCAGTATAGTTACTTCGATTTATCCAATGATGCACTTGTG
TGCCAGTATAATTACTTCGA
Found at i:15101557 original size:127 final size:126
Alignment explanation
Indices: 15101324--15101777 Score: 447
Period size: 127 Copynumber: 3.6 Consensus size: 126
15101314 ACTGGTTATG
* *
15101324 CTTCAGTTTATCCAATGATGCACTGTGTGTGCTAGTATAGTTACTTCGATTTATTCGATGATGCG
1 CTTCGGTTTATCCAATGATGCACTGTGTGTGC-AGTATAGTTACTTCGATTTATTCGATGATGCA
* * * *
15101389 CTTTGTGTGCCAGTATAGTTGCTT--TTCTTTCTTCGATGATGCATTATGTGTGTCAGTATAGTT
65 CTGTGTGTGCCAGTATAGTTACTTCAAT-TTTC-T-GATGATGCA-TATGTGTGCCAGTATAGTT
15101452 A
126 A
* * * * * *
15101453 CTTGGGTTTATCCAATGAAGCACTGTGTGT-CAGTATAGTTATTTTGATTTATTTGTTGATGCAC
1 CTTCGGTTTATCCAATGATGCACTGTGTGTGCAGTATAGTTACTTCGATTTATTCGATGATGCAC
* * *
15101517 TGTGTGTGCCAGCATAGTTACTTCAAATTTTCTGATGATGCA-CTGTGTGCCAGTATAATTA
66 TGTGTGTGCCAGTATAGTTACTTC-AATTTTCTGATGATGCATATGTGTGCCAGTATAGTTA
* ** * * * * * *
15101578 CTTCGATTTATCCGTTGATGCATTGTGTGTGCCAGTATAGTTACTTCGGTTTCTCCAATGGTGCA
1 CTTCGGTTTATCCAATGATGCACTGTGTGTG-CAGTATAGTTACTTCGATTTATTCGATGATGCA
* * *
15101643 CCGTGTGTGCCAGTATAATTACTTCAATTTATCTGATGATGCACTGTGTGTGCCAGTATAGTTA
65 CTGTGTGTGCCAGTATAGTTACTTCAATTT-TCTGATGATGCA-TATGTGTGCCAGTATAGTTA
* ** * * *
15101707 --T-GGTTTCTCTGATGATGCACTGTGTGTGTCAATATAGTTGCTTCGATATA-TCGAATGATGC
1 CTTCGGTTTATCCAATGATGCACTGTGTGTG-CAGTATAGTTACTTCGATTTATTCG-ATGATGC
*
15101768 GCTGTGTGTG
64 ACTGTGTGTG
15101778 TTCTAAAAAT
Statistics
Matches: 265, Mismatches: 51, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
125 41 0.15
126 57 0.22
127 116 0.44
128 2 0.01
129 48 0.18
130 1 0.00
ACGTcount: A:0.20, C:0.16, G:0.23, T:0.41
Consensus pattern (126 bp):
CTTCGGTTTATCCAATGATGCACTGTGTGTGCAGTATAGTTACTTCGATTTATTCGATGATGCAC
TGTGTGTGCCAGTATAGTTACTTCAATTTTCTGATGATGCATATGTGTGCCAGTATAGTTA
Found at i:15106737 original size:26 final size:26
Alignment explanation
Indices: 15106688--15106914 Score: 222
Period size: 26 Copynumber: 8.7 Consensus size: 26
15106678 ACGGAGTTTT
* *
15106688 CCACAAAGGCATTCCTTTCATATTCCA
1 CCACAAAGG-ATTTCTTTCATATTACA
*
15106715 CCACAAAGGATTTCTTTCCTATTACA
1 CCACAAAGGATTTCTTTCATATTACA
* * * *
15106741 CAACAAAGGCTTTCTTTCATAATACG
1 CCACAAAGGATTTCTTTCATATTACA
* *
15106767 CCATAAAGGCTTTCTTTCATATTACA
1 CCACAAAGGATTTCTTTCATATTACA
* * *
15106793 CCTCCAAGGTTTTCTTTCATATTACA
1 CCACAAAGGATTTCTTTCATATTACA
* * *
15106819 CCACAAACGCTTTCTTTCATATTATA
1 CCACAAAGGATTTCTTTCATATTACA
* *
15106845 CCACAAA-GACTTTCTTTTATTTTACA
1 CCACAAAGGA-TTTCTTTCATATTACA
* * **
15106871 CCATAAAGAATTTCTTTCATATTATG
1 CCACAAAGGATTTCTTTCATATTACA
* *
15106897 CCACAAAGGTTTTGTTTC
1 CCACAAAGGATTTCTTTC
15106915 TTGACTTGTT
Statistics
Matches: 163, Mismatches: 35, Indels: 5
0.80 0.17 0.02
Matches are distributed among these distances:
25 1 0.01
26 152 0.93
27 10 0.06
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (26 bp):
CCACAAAGGATTTCTTTCATATTACA
Found at i:15106807 original size:78 final size:78
Alignment explanation
Indices: 15106688--15106894 Score: 252
Period size: 78 Copynumber: 2.6 Consensus size: 78
15106678 ACGGAGTTTT
* * * *
15106688 CCACAAAGGCATTCCTTTCATATTCCACCACAAAGGATTTCTTTCCTATTACACAACAAAGGCTT
1 CCACAAAGGC-TTTCTTTCATATTACACCACAAAGGATTTCTTTCATATTACACAACAAACGCTT
*
15106753 TCTTTCATAATACG
65 TCTTTCATAATACA
* * * * *
15106767 CCATAAAGGCTTTCTTTCATATTACACCTCCAAGGTTTTCTTTCATATTACACCACAAACGCTTT
1 CCACAAAGGCTTTCTTTCATATTACACCACAAAGGATTTCTTTCATATTACACAACAAACGCTTT
* *
15106832 CTTTCATATTATA
66 CTTTCATAATACA
* * * * *
15106845 CCACAAAGACTTTCTTTTATTTTACACCATAAAGAATTTCTTTCATATTA
1 CCACAAAGGCTTTCTTTCATATTACACCACAAAGGATTTCTTTCATATTA
15106895 TGCCACAAAG
Statistics
Matches: 107, Mismatches: 21, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
78 98 0.92
79 9 0.08
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (78 bp):
CCACAAAGGCTTTCTTTCATATTACACCACAAAGGATTTCTTTCATATTACACAACAAACGCTTT
CTTTCATAATACA
Found at i:15111660 original size:18 final size:18
Alignment explanation
Indices: 15111637--15111671 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
15111627 TCCCTGAGTG
*
15111637 ATAGTCTATTATTAACTT
1 ATAGTCTATTATCAACTT
*
15111655 ATAGTCTTTTATCAACT
1 ATAGTCTATTATCAACT
15111672 CCAACCATCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.49
Consensus pattern (18 bp):
ATAGTCTATTATCAACTT
Found at i:15115586 original size:47 final size:47
Alignment explanation
Indices: 15115517--15115774 Score: 224
Period size: 47 Copynumber: 5.5 Consensus size: 47
15115507 TGTCGATGCT
* * **
15115517 ATGTCCCAGACACGGTATTACACTGACTTACATCTCAAGTTGAAGCC
1 ATGTCCCAGACATGGTCTTACACTGACTTACATCTCAAGCCGAAGCC
* * *
15115564 ATGTCCTAGACATGGTCTTACACTGACTTACGTCTCAAGTCGAAGCC
1 ATGTCCCAGACATGGTCTTACACTGACTTACATCTCAAGCCGAAGCC
* * * * *
15115611 ATGTCCTAAACATGGTCTTATACTGAC-TATCATCTCGTAGCCGACG-C
1 ATGTCCCAGACATGGTCTTACACTGACTTA-CATCTC-AAGCCGAAGCC
* * * * * *
15115658 ATGTCCCAGACAT-TTCTTACACTGGCTTACGTCTCGAGGCGGATG-C
1 ATGTCCCAGACATGGTCTTACACTGACTTACATCTC-AAGCCGAAGCC
* * *
15115704 ATGTCCCAGACAT-GTCTTACAGTAGCAC-T-CATCTCAATGCTGATGCC
1 ATGTCCCAGACATGGTCTTACACT-G-ACTTACATCTCAA-GCCGAAGCC
15115751 ATGTCCCAGACATGGTCTTACACT
1 ATGTCCCAGACATGGTCTTACACT
15115775 AGCTCTCACA
Statistics
Matches: 175, Mismatches: 28, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
45 1 0.01
46 56 0.32
47 102 0.58
48 16 0.09
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (47 bp):
ATGTCCCAGACATGGTCTTACACTGACTTACATCTCAAGCCGAAGCC
Found at i:15115717 original size:93 final size:93
Alignment explanation
Indices: 15115510--15115774 Score: 254
Period size: 94 Copynumber: 2.8 Consensus size: 93
15115500 GGTAACGTGT
* * ** *
15115510 CGATGCTATGTCCCAGACACGGTATTACACTGACTTACATCTCAAGTTGAAGCCATGTCCTAGAC
1 CGATGC-ATGTCCCAGACATGGTCTTACACTGACTTACATCTCAAGCCGAAGCCATGTCCCAGAC
*
15115575 ATGGTCTTACACTGACTTACGTCTCAAGT
65 ATGGTCTTACACTGACTTACGTCTCAAGG
* * * * * *
15115604 CGAAGCCATGTCCTAAACATGGTCTTATACTGAC-TATCATCTCGTAGCCGACG-CATGTCCCAG
1 CGATG-CATGTCCCAGACATGGTCTTACACTGACTTA-CATCTC-AAGCCGAAGCCATGTCCCAG
* * *
15115667 ACAT-TTCTTACACTGGCTTACGTCTCGAGG
63 ACATGGTCTTACACTGACTTACGTCTCAAGG
* * *
15115697 CGGATGCATGTCCCAGACAT-GTCTTACAGTAGCAC-T-CATCTCAATGCTGATGCCATGTCCCA
1 C-GATGCATGTCCCAGACATGGTCTTACACT-G-ACTTACATCTCAA-GCCGAAGCCATGTCCCA
15115759 GACATGGTCTTACACT
62 GACATGGTCTTACACT
15115775 AGCTCTCACA
Statistics
Matches: 138, Mismatches: 24, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
91 1 0.01
92 19 0.14
93 52 0.38
94 60 0.43
95 6 0.04
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (93 bp):
CGATGCATGTCCCAGACATGGTCTTACACTGACTTACATCTCAAGCCGAAGCCATGTCCCAGACA
TGGTCTTACACTGACTTACGTCTCAAGG
Found at i:15121758 original size:47 final size:45
Alignment explanation
Indices: 15121652--15121772 Score: 138
Period size: 47 Copynumber: 2.6 Consensus size: 45
15121642 ATATCCGTGT
* * * *
15121652 CGATGCCATGTCCCAAACATGGTCTTACACTTACACATTTTGTAGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACATACACATCTCGTAGC
* *
15121698 CTATG-CATGTCCCAGACATGTCTTACACATGCTTACATCTCG-AGGC
1 CGATGCCATGTCCCAGACATGTCTTACACATAC--ACATCTCGTA-GC
15121744 CGATGCCATGTCCCAGACATGTCTTACAC
1 CGATGCCATGTCCCAGACATGTCTTACAC
15121773 TAGCACACAA
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
44 11 0.17
45 14 0.22
46 16 0.25
47 23 0.36
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.28
Consensus pattern (45 bp):
CGATGCCATGTCCCAGACATGTCTTACACATACACATCTCGTAGC
Found at i:15124112 original size:46 final size:46
Alignment explanation
Indices: 15124012--15124231 Score: 153
Period size: 46 Copynumber: 4.7 Consensus size: 46
15124002 TGTGAGAGCT
* * * * *
15124012 AGTGAAAGACCATGTCTGGGACATGGCATAGGCATTGAGATG--AGTCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACCTCGAGATGTAAG-CC
*
15124059 TAGTGTAAGACGTGTCTGGGACATGCATCGACCTCGAGATGTAAGCC
1 -AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATGTAAGCC
* * * *
15124106 AGTGTAAGACATGTCTGGGACATGCGTTG-GCTACGAGATG-ATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCT-CGAGATGTA-AGCC
* * * * *
15124152 AGTGTAAGACCATGTCTGGGACATGGCTTGGA-CTTGAGATATAAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACCTCGAGATGTAAGCC
* * *
15124199 AGTGTAAGACTGTGTCTGAGACACGACATCGAC
1 AGTGTAAGAC-ATGTCTGGGACATG-CATCGAC
15124232 ATCGTACCCC
Statistics
Matches: 139, Mismatches: 22, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
45 3 0.02
46 60 0.43
47 59 0.42
48 17 0.12
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATGTAAGCC
Found at i:15124191 original size:47 final size:47
Alignment explanation
Indices: 15124010--15124208 Score: 173
Period size: 46 Copynumber: 4.3 Consensus size: 47
15124000 TTTGTGAGAG
* * *
15124010 CTAGTGAAAGACCATGTCTGGGACATGGCATAGGCATTGAGATG--AGT
1 CTAGTGTAAGACCATGTCTGGGACAT-GCATTGGC-TCGAGATGTAAGT
* * *
15124057 CCTAGTGTAAGA-CGTGTCTGGGACATGCATCGACCTCGAGATGTAAG-
1 -CTAGTGTAAGACCATGTCTGGGACATGCATTG-GCTCGAGATGTAAGT
* *
15124104 CCAGTGTAAGA-CATGTCTGGGACATGCGTTGGCTACGAGATG-ATAGT
1 CTAGTGTAAGACCATGTCTGGGACATGCATTGGCT-CGAGATGTA-AGT
* *
15124151 C-AGTGTAAGACCATGTCTGGGACATGGC-TTGGACTTGAGATATAAG-
1 CTAGTGTAAGACCATGTCTGGGACAT-GCATTGG-CTCGAGATGTAAGT
15124197 CTAGTGTAAGAC
1 CTAGTGTAAGAC
15124209 TGTGTCTGAG
Statistics
Matches: 128, Mismatches: 12, Indels: 23
0.79 0.07 0.14
Matches are distributed among these distances:
45 3 0.02
46 58 0.45
47 50 0.39
48 17 0.13
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.25
Consensus pattern (47 bp):
CTAGTGTAAGACCATGTCTGGGACATGCATTGGCTCGAGATGTAAGT
Found at i:15126461 original size:6 final size:6
Alignment explanation
Indices: 15126450--15126474 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
15126440 TTACTACTAT
15126450 AAATTG AAATTG AAATTG AAATTG A
1 AAATTG AAATTG AAATTG AAATTG A
15126475 CTATTTTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.16, T:0.32
Consensus pattern (6 bp):
AAATTG
Found at i:15129706 original size:7 final size:7
Alignment explanation
Indices: 15129694--15129725 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
15129684 GATTATTCGA
15129694 TCCATCT
1 TCCATCT
15129701 TCCATCT
1 TCCATCT
15129708 TCCATCT
1 TCCATCT
15129715 TCCATCT
1 TCCATCT
15129722 TCCA
1 TCCA
15129726 CCTTTTAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.16, C:0.44, G:0.00, T:0.41
Consensus pattern (7 bp):
TCCATCT
Found at i:15129786 original size:22 final size:23
Alignment explanation
Indices: 15129743--15129788 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
15129733 ATTTTAATTT
*
15129743 TCTTTATTTATTTTTGTTTTGAA
1 TCTTTATTTATTTTTGTCTTGAA
15129766 TCTTTATTT-TTTTAT-TCTTGAA
1 TCTTTATTTATTTT-TGTCTTGAA
15129788 T
1 T
15129789 TTCTTCTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 11 0.52
23 10 0.48
ACGTcount: A:0.17, C:0.07, G:0.07, T:0.70
Consensus pattern (23 bp):
TCTTTATTTATTTTTGTCTTGAA
Found at i:15134359 original size:34 final size:34
Alignment explanation
Indices: 15134312--15134376 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
15134302 TCACACTAGG
*
15134312 GTCTATTTTCCCTTTAAAGACCTTCAGTTTTAGC
1 GTCTATTTGCCCTTTAAAGACCTTCAGTTTTAGC
15134346 GTCTATTTGCCCTTTAAAGACCTTCAGTTTT
1 GTCTATTTGCCCTTTAAAGACCTTCAGTTTT
15134377 TATTCTCTAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.20, C:0.23, G:0.12, T:0.45
Consensus pattern (34 bp):
GTCTATTTGCCCTTTAAAGACCTTCAGTTTTAGC
Found at i:15146878 original size:45 final size:44
Alignment explanation
Indices: 15146810--15146899 Score: 135
Period size: 45 Copynumber: 2.0 Consensus size: 44
15146800 AGATTTGTTT
*
15146810 ATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAG
1 ATTTATAGCTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAG
* * *
15146854 ATTTACTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAG
1 ATTTA-TAGCTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAG
15146899 A
1 A
15146900 CCTGACTTCA
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
44 5 0.12
45 36 0.88
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (44 bp):
ATTTATAGCTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAG
Found at i:15147071 original size:64 final size:64
Alignment explanation
Indices: 15146970--15147158 Score: 351
Period size: 64 Copynumber: 3.0 Consensus size: 64
15146960 TGTATCTATG
*
15146970 CTTATGCCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTGACA
1 CTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTGACA
15147034 CTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTGACA
1 CTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTGACA
* *
15147098 CTTATGTCAAATAATTAGGATGCTATGCTCGAAATGAATCAAATGCTCCTAACTAGATGTG
1 CTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
15147159 TTATGAATGA
Statistics
Matches: 122, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 122 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (64 bp):
CTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTGACA
Found at i:15148296 original size:24 final size:23
Alignment explanation
Indices: 15148264--15148337 Score: 69
Period size: 24 Copynumber: 3.1 Consensus size: 23
15148254 TTTTTCTCTC
*
15148264 TTTTTTGATTGATTTCTTTTTAAT
1 TTTTTTGATTGATTTATTTTT-AT
* *
15148288 TTTTTTGATTTA-TTATTATTAT
1 TTTTTTGATTGATTTATTTTTAT
* *
15148310 TTTGATTTGATTGATTTTTTTTTGT
1 TTT--TTTGATTGATTTATTTTTAT
15148335 TTT
1 TTT
15148338 ATTTTTTTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
22 5 0.12
23 6 0.15
24 19 0.47
25 10 0.25
ACGTcount: A:0.16, C:0.01, G:0.09, T:0.73
Consensus pattern (23 bp):
TTTTTTGATTGATTTATTTTTAT
Found at i:15148314 original size:19 final size:19
Alignment explanation
Indices: 15148290--15148340 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
15148280 TTTTTAATTT
15148290 TTTTGATTTATT-ATTATTA
1 TTTTGATTTATTGATT-TTA
*
15148309 TTTTGATTTGATTGATTTTT
1 TTTTGATTT-ATTGATTTTA
*
15148329 TTTTGTTTTATT
1 TTTTGATTTATT
15148341 TTTTTTTGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 12 0.43
20 13 0.46
21 3 0.11
ACGTcount: A:0.18, C:0.00, G:0.10, T:0.73
Consensus pattern (19 bp):
TTTTGATTTATTGATTTTA
Found at i:15148333 original size:15 final size:15
Alignment explanation
Indices: 15148315--15148348 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
15148305 ATTATTTTGA
15148315 TTTGATTGATTTTTT
1 TTTGATTGATTTTTT
* *
15148330 TTTGTTTTATTTTTT
1 TTTGATTGATTTTTT
15148345 TTTG
1 TTTG
15148349 TATGGGTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.09, C:0.00, G:0.12, T:0.79
Consensus pattern (15 bp):
TTTGATTGATTTTTT
Found at i:15148346 original size:19 final size:19
Alignment explanation
Indices: 15148287--15148347 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
15148277 TTCTTTTTAA
* *
15148287 TTTTTTTGATTTATTATTA
1 TTTTTTTGTTTTATTATTT
* *
15148306 TTATTTTGATTTGATTGA-TT
1 TTTTTTTG-TTTTATT-ATTT
15148326 TTTTTTTGTTTTATT-TTT
1 TTTTTTTGTTTTATTATTT
15148344 TTTT
1 TTTT
15148348 GTATGGGTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
18 6 0.18
19 13 0.39
20 13 0.39
21 1 0.03
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (19 bp):
TTTTTTTGTTTTATTATTT
Found at i:15150664 original size:11 final size:11
Alignment explanation
Indices: 15150648--15150677 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
15150638 AATATCATAT
15150648 GTATGCATCAG
1 GTATGCATCAG
15150659 GTATGCATCAG
1 GTATGCATCAG
*
15150670 ATATGCAT
1 GTATGCAT
15150678 GTCACATCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (11 bp):
GTATGCATCAG
Found at i:15151096 original size:29 final size:28
Alignment explanation
Indices: 15151032--15151121 Score: 117
Period size: 29 Copynumber: 3.1 Consensus size: 28
15151022 CACATACCTG
* *
15151032 TATATGGCCCACTAGGCCCAATCACATT
1 TATATGGCCCATTAGGCCCAATTACATT
*
15151060 TATATGGCCTATTAGGCCCGAATTACATT
1 TATATGGCCCATTAGGCCC-AATTACATT
* *
15151089 TATATGGCCCATCAGGCCCAATTCACAGT
1 TATATGGCCCATTAGGCCCAATT-ACATT
15151118 TATA
1 TATA
15151122 GTCATGCTCA
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
28 21 0.39
29 33 0.61
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (28 bp):
TATATGGCCCATTAGGCCCAATTACATT
Found at i:15151359 original size:16 final size:16
Alignment explanation
Indices: 15151334--15151376 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
15151324 GTCATCAAAC
*
15151334 TTTCAACTTTTCGACA
1 TTTCAGCTTTTCGACA
*
15151350 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGACA
15151366 TTTCAGCTTTT
1 TTTCAGCTTTT
15151377 GCCGATCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.16, C:0.23, G:0.12, T:0.49
Consensus pattern (16 bp):
TTTCAGCTTTTCGACA
Found at i:15155158 original size:19 final size:19
Alignment explanation
Indices: 15155122--15155162 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
15155112 AATCTAATAG
15155122 AAATGATGCAATGCAATGC
1 AAATGATGCAATGCAATGC
*
15155141 AAATGCATGGAATG-AATGC
1 AAATG-ATGCAATGCAATGC
15155160 AAA
1 AAA
15155163 AGAAAGAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.46, C:0.12, G:0.22, T:0.20
Consensus pattern (19 bp):
AAATGATGCAATGCAATGC
Found at i:15157856 original size:24 final size:25
Alignment explanation
Indices: 15157829--15157880 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
15157819 GCCTAGCCTC
15157829 TTTTAAT-AACTAGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
* *
15157853 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
15157878 TTT
1 TTT
15157881 CGGTAAGCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTAGGGCAAAGCCCT
Found at i:15157870 original size:25 final size:25
Alignment explanation
Indices: 15157836--15157905 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
15157826 CTCTTTTAAT
* *
15157836 AACTAGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
15157861 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
* **
15157886 AGCTGGGGCTTAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
15157906 AGCACTTCAT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.29
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:15158139 original size:27 final size:27
Alignment explanation
Indices: 15158109--15158191 Score: 121
Period size: 27 Copynumber: 3.1 Consensus size: 27
15158099 GGCAAAATGG
* * * *
15158109 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
*
15158136 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
15158163 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
15158190 TA
1 TA
15158192 TTTTACAAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.33
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGA
Found at i:15158217 original size:26 final size:27
Alignment explanation
Indices: 15158176--15158330 Score: 120
Period size: 27 Copynumber: 5.8 Consensus size: 27
15158166 TTCTACCCTA
* *
15158176 CAGGGGTATTTCGAT-ATTTTACAAAT
1 CAGGAGTATTTTGATAATTTTACAAAT
*
15158202 -AGAGAGTATTTTGATAATTTCACAAAT
1 CAG-GAGTATTTTGATAATTTTACAAAT
* * * *
15158229 CAGGGGTATTTTGGTAATTTTATAAAC
1 CAGGAGTATTTTGATAATTTTACAAAT
* * *
15158256 CAGGGGTATTTT-AGTAAATTTACAAAC
1 CAGGAGTATTTTGA-TAATTTTACAAAT
* * **
15158283 CAGGGGTATTTTGGTAATTTTACTGAT
1 CAGGAGTATTTTGATAATTTTACAAAT
*
15158310 CGAGG-GTATTTTGGTAATTTT
1 C-AGGAGTATTTTGATAATTTT
15158331 GTAAACCAAG
Statistics
Matches: 107, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
25 2 0.02
26 10 0.09
27 90 0.84
28 5 0.05
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
CAGGAGTATTTTGATAATTTTACAAAT
Found at i:15158330 original size:27 final size:28
Alignment explanation
Indices: 15158207--15158357 Score: 150
Period size: 27 Copynumber: 5.6 Consensus size: 28
15158197 CAAATAGAGA
* * *
15158207 GTATTTTGATAATTTCAC-AAATCAGGG
1 GTATTTTGGTAATTTTACTAAACCAGGG
15158234 GTATTTTGGTAATTTTA-TAAACCAGGG
1 GTATTTTGGTAATTTTACTAAACCAGGG
* *
15158261 GTATTTTAGTAAATTTAC-AAACCAGGG
1 GTATTTTGGTAATTTTACTAAACCAGGG
* * *
15158288 GTATTTTGGTAATTTTACTGATCGA-GG
1 GTATTTTGGTAATTTTACTAAACCAGGG
* *
15158315 GTATTTTGGTAATTTT-GTAAACCAAGG
1 GTATTTTGGTAATTTTACTAAACCAGGG
* **
15158342 TTATTTCAGTAATTTT
1 GTATTTTGGTAATTTT
15158358 GTAAATTAAG
Statistics
Matches: 103, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
26 4 0.04
27 96 0.93
28 3 0.03
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.42
Consensus pattern (28 bp):
GTATTTTGGTAATTTTACTAAACCAGGG
Found at i:15158337 original size:54 final size:54
Alignment explanation
Indices: 15158176--15158357 Score: 170
Period size: 54 Copynumber: 3.4 Consensus size: 54
15158166 TTCTACCCTA
* * * * * * *
15158176 CAGGGGTATTTCGAT-ATTTTACAAATAGAGAGTATTTTGATAATTTCACAAAT
1 CAGGGGTATTTCGGTAATTTTACTAATCGAGGGTATTTTGGTAATTTTACAAAC
* * * * *
15158229 CAGGGGTATTTTGGTAATTTTA-TAAACCAGGGGTATTTTAGTAAATTTACAAAC
1 CAGGGGTATTTCGGTAATTTTACTAATCGA-GGGTATTTTGGTAATTTTACAAAC
* * **
15158283 CAGGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAAC
1 CAGGGGTATTTCGGTAATTTTACTAATCGAGGGTATTTTGGTAATTTTACAAAC
* * *
15158337 CAAGGTTATTTCAGTAATTTT
1 CAGGGGTATTTCGGTAATTTT
15158358 GTAAATTAAG
Statistics
Matches: 103, Mismatches: 23, Indels: 5
0.79 0.18 0.04
Matches are distributed among these distances:
53 16 0.16
54 83 0.81
55 4 0.04
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
CAGGGGTATTTCGGTAATTTTACTAATCGAGGGTATTTTGGTAATTTTACAAAC
Found at i:15158380 original size:27 final size:27
Alignment explanation
Indices: 15158366--15158640 Score: 381
Period size: 27 Copynumber: 10.2 Consensus size: 27
15158356 TTGTAAATTA
* *
15158366 AGGGTAAAACGGTAATTTTATAAATTG
1 AGGGTAAAACGGTAATTCTATAAATCG
15158393 AGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
*
15158420 AGGGTAAAATGGTAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
* *
15158447 AGCGTAAAATGGTAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
* **
15158474 ATGGTAAAATTGTAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
* * * *
15158501 AGGGAAAAACAGTAATTCTGTAAATCA
1 AGGGTAAAACGGTAATTCTATAAATCG
*
15158528 AGGGTAAAACGAT-ATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
*
15158554 AGGGTAAAACGATAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
* * *
15158581 AGGGTAAAATGGTAATTCTGTAAATCA
1 AGGGTAAAACGGTAATTCTATAAATCG
*
15158608 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
15158635 AGGGTA
1 AGGGTA
15158641 CTTTGGTAAT
Statistics
Matches: 223, Mismatches: 24, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
26 24 0.11
27 199 0.89
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.28
Consensus pattern (27 bp):
AGGGTAAAACGGTAATTCTATAAATCG
Found at i:15158380 original size:81 final size:81
Alignment explanation
Indices: 15158232--15158385 Score: 182
Period size: 81 Copynumber: 1.9 Consensus size: 81
15158222 CACAAATCAG
* * * ****
15158232 GGGTATTTTGGTAATTTTATAAACCAGGGGTATTTTAGTAAATTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTCAGTAAATTTACAAACCAAGGGTAAAACGG
15158297 TAATTTTACTGATCGA
66 TAATTTTACTGATCGA
* * * ** **
15158313 GGGTATTTTGGTAATTTTGTAAACCAAGGTTATTTCAGTAATTTTGTAAATTAAGGGTAAAACGG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTCAGTAAATTTACAAACCAAGGGTAAAACGG
15158378 TAATTTTA
66 TAATTTTA
15158386 TAAATTGAGG
Statistics
Matches: 59, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 59 1.00
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.40
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTCAGTAAATTTACAAACCAAGGGTAAAACGG
TAATTTTACTGATCGA
Found at i:15158651 original size:134 final size:135
Alignment explanation
Indices: 15158366--15158638 Score: 395
Period size: 134 Copynumber: 2.0 Consensus size: 135
15158356 TTGTAAATTA
* * * * ** * *
15158366 AGGGTAAAACGGTAATTTTATAAATTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATG
1 AGGGAAAAACAGTAATTCTGTAAATCAAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACG
* * * **
15158431 GTAATTCTATAAATCGAGCGTAAAATGGTAATTCTATAAATCGATGGTAAAATTGTAATTCTATA
66 ATAATTCTATAAATCGAGCGTAAAATGGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTATA
15158496 AATCG
131 AATCG
15158501 AGGGAAAAACAGTAATTCTGTAAATCAAGGGTAAAACGAT-ATTCTATAAATCGAGGGTAAAACG
1 AGGGAAAAACAGTAATTCTGTAAATCAAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACG
* * *
15158565 ATAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTGTA
66 ATAATTCTATAAATCGAGCGTAAAATGGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTATA
15158630 AATCG
131 AATCG
15158635 AGGG
1 AGGG
15158639 TACTTTGGTA
Statistics
Matches: 122, Mismatches: 16, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
134 89 0.73
135 33 0.27
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.28
Consensus pattern (135 bp):
AGGGAAAAACAGTAATTCTGTAAATCAAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACG
ATAATTCTATAAATCGAGCGTAAAATGGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTATA
AATCG
Found at i:15158665 original size:81 final size:81
Alignment explanation
Indices: 15158350--15158640 Score: 422
Period size: 81 Copynumber: 3.6 Consensus size: 81
15158340 GGTTATTTCA
* * * *
15158350 GTAATTTTGTAAATTAAGGGTAAAACGGTAATTTTATAAATTGAGGGTAAAACGGTAATTCTATA
1 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
15158415 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* * * * * **
15158431 GTAATTCTATAAATCGAGCGTAAAATGGTAATTCTATAAATCGATGGTAAAATTGTAATTCTATA
1 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
* **
15158496 AATCGAGGGAAAAACA
66 AATCGAGGGTAAAATG
* *
15158512 GTAATTCTGTAAATCAAGGGTAAAACGAT-ATTCTATAAATCGAGGGTAAAACGATAATTCTATA
1 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
15158576 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
*
15158592 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
1 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
15158641 CTTTGGTAAT
Statistics
Matches: 181, Mismatches: 28, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
80 72 0.40
81 109 0.60
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.30
Consensus pattern (81 bp):
GTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
AATCGAGGGTAAAATG
Found at i:15160126 original size:16 final size:18
Alignment explanation
Indices: 15160102--15160146 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 18
15160092 TTGATTTAAT
*
15160102 TAATGATATATAT-AA-A
1 TAATAATATATATGAAGA
15160118 TAATAATATATATGAAGA
1 TAATAATATATATGAAGA
*
15160136 TACTAATATAT
1 TAATAATATAT
15160147 GAAAGTATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 12 0.48
17 2 0.08
18 11 0.44
ACGTcount: A:0.53, C:0.02, G:0.07, T:0.38
Consensus pattern (18 bp):
TAATAATATATATGAAGA
Found at i:15161825 original size:93 final size:93
Alignment explanation
Indices: 15161699--15161869 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
15161689 GCCCATAAGT
* *
15161699 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
15161764 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
** *
15161792 GAACTCGGACTCAACTCAGTGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
15161857 CGAGTTCGGATGC
66 CGAGTTCGGATGC
15161870 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:15161866 original size:46 final size:46
Alignment explanation
Indices: 15161691--15161866 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
15161681 TGTAACCCGC
* *
15161691 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
15161737 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * * **
15161787 --TTCA-CGAACTCGGACTCAACTCAGTGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
15161830 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
15161867 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.58
47 27 0.25
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:15164001 original size:9 final size:9
Alignment explanation
Indices: 15163987--15164034 Score: 53
Period size: 9 Copynumber: 5.3 Consensus size: 9
15163977 ACTAATGGAC
15163987 TTTATTTTG
1 TTTATTTTG
*
15163996 TTTATTAT-
1 TTTATTTTG
*
15164004 TTTATTTTA
1 TTTATTTTG
15164013 TTTATTTTGG
1 TTTATTTT-G
*
15164023 TTTTTTTTG
1 TTTATTTTG
15164032 TTT
1 TTT
15164035 TTGTATGGAC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
8 7 0.21
9 19 0.58
10 7 0.21
ACGTcount: A:0.12, C:0.00, G:0.08, T:0.79
Consensus pattern (9 bp):
TTTATTTTG
Found at i:15165045 original size:23 final size:24
Alignment explanation
Indices: 15164989--15165047 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
15164979 AAATAAATTA
* *
15164989 TTTTATAACAAGTGTACATATATC
1 TTTTATTACAAATGTACATATATC
15165013 TATTTATTACAAATGTACCA-ATAT-
1 T-TTTATTACAAATGTA-CATATATC
15165037 TTTTATTACAA
1 TTTTATTACAA
15165048 TTGTCATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
23 10 0.32
24 2 0.06
25 17 0.55
26 2 0.06
ACGTcount: A:0.39, C:0.12, G:0.05, T:0.44
Consensus pattern (24 bp):
TTTTATTACAAATGTACATATATC
Found at i:15166210 original size:34 final size:34
Alignment explanation
Indices: 15166167--15166231 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
15166157 TTGCATAGAA
* *
15166167 AACAAGCTCTTTAAGTGCAGAAATAACCCAATAT
1 AACAAGCTCTTTAAATGCAGAAATAAACCAATAT
*
15166201 AACAAGCTCTTTAAATGCGGAAATAAACCAA
1 AACAAGCTCTTTAAATGCAGAAATAAACCAA
15166232 ATTAACTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.46, C:0.20, G:0.12, T:0.22
Consensus pattern (34 bp):
AACAAGCTCTTTAAATGCAGAAATAAACCAATAT
Found at i:15168083 original size:29 final size:30
Alignment explanation
Indices: 15168048--15168412 Score: 263
Period size: 29 Copynumber: 12.5 Consensus size: 30
15168038 GATGGTCGAA
* * *
15168048 ACCATCCCTTTTCATATTTGAT-GTTCATC
1 ACCATCCCTTTTCATAGTCGATAGTTCGTC
* * *
15168077 ACTATCCCTTTTCATTAATCGAT-GGTCGTC
1 ACCATCCCTTTTCA-TAGTCGATAGTTCGTC
* * ** *
15168107 ACCATCCCTTTTAATTAATTAATGGTT-GTC
1 ACCATCCCTTTTCA-TAGTCGATAGTTCGTC
* *
15168137 ACCATCCCTTTTCATATTCGATAG-TCATC
1 ACCATCCCTTTTCATAGTCGATAGTTCGTC
15168166 ACCATCCCTTTTCATAGTCGATAG-TCGTC
1 ACCATCCCTTTTCATAGTCGATAGTTCGTC
* * **
15168195 ACCATCTCTTTTCATAATCGATAGTT-GAA
1 ACCATCCCTTTTCATAGTCGATAGTTCGTC
* *** *
15168224 ACTATTTATTTTCATA-TACGATGGTT-GTC
1 ACCATCCCTTTTCATAGT-CGATAGTTCGTC
* *
15168253 ACCATCCCTTTTCATAGTTGATGGTT-GTC
1 ACCATCCCTTTTCATAGTCGATAGTTCGTC
* * *
15168282 ACTATCCCTTTTCATAGTTGATGGTT-GTC
1 ACCATCCCTTTTCATAGTCGATAGTTCGTC
* *
15168311 ACCATCCCTTTTCATAGTTGAT-GGTCGTC
1 ACCATCCCTTTTCATAGTCGATAGTTCGTC
* *
15168340 ATCATCCCTTTTCATAGTCGATAG-TCAG-A
1 ACCATCCCTTTTCATAGTCGATAGTTC-GTC
* * * ***
15168369 ACTATCCCTTTTCATAATCGAT-GGTCAAA
1 ACCATCCCTTTTCATAGTCGATAGTTCGTC
15168398 ACCATCCCTTTTCAT
1 ACCATCCCTTTTCAT
15168413 TAATCGATGA
Statistics
Matches: 281, Mismatches: 44, Indels: 22
0.81 0.13 0.06
Matches are distributed among these distances:
28 5 0.02
29 224 0.80
30 50 0.18
31 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.12, T:0.40
Consensus pattern (30 bp):
ACCATCCCTTTTCATAGTCGATAGTTCGTC
Found at i:15168216 original size:58 final size:58
Alignment explanation
Indices: 15168048--15168427 Score: 316
Period size: 58 Copynumber: 6.5 Consensus size: 58
15168038 GATGGTCGAA
* * * * * *
15168048 ACCATCCCTTTTCATATTTGATGTTCATCACTATCCCTTTTCATTAATCGATGGTCGTC
1 ACCATCCCTTTTCATAGTCGATGGTCGTCACCATCCCTTTTCA-TAATCGATGGTCATC
* * ** * * *
15168107 ACCATCCCTTTTAATTAATTAATGGTTGTCACCATCCCTTTTCATATTCGATAGTCATC
1 ACCATCCCTTTTCA-TAGTCGATGGTCGTCACCATCCCTTTTCATAATCGATGGTCATC
* * * * *
15168166 ACCATCCCTTTTCATAGTCGATAGTCGTCACCATCTCTTTTCATAATCGATAGTTGA-A
1 ACCATCCCTTTTCATAGTCGATGGTCGTCACCATCCCTTTTCATAATCGAT-GGTCATC
* *** * * * **
15168224 ACTATTTATTTTCATA-TACGATGGTTGTCACCATCCCTTTTCATAGTTGATGGTTGTC
1 ACCATCCCTTTTCATAGT-CGATGGTCGTCACCATCCCTTTTCATAATCGATGGTCATC
* * * * * *
15168282 ACTATCCCTTTTCATAGTTGATGGTTGTCACCATCCCTTTTCATAGTTGATGGTCGTC
1 ACCATCCCTTTTCATAGTCGATGGTCGTCACCATCCCTTTTCATAATCGATGGTCATC
* * * * **
15168340 ATCATCCCTTTTCATAGTCGATAGTCAG-AACTATCCCTTTTCATAATCGATGGTCAAA
1 ACCATCCCTTTTCATAGTCGATGGTC-GTCACCATCCCTTTTCATAATCGATGGTCATC
* *
15168398 ACCATCCCTTTTCATTAATCGATGATCGTC
1 ACCATCCCTTTTCA-TAGTCGATGGTCGTC
15168428 GATACACAAT
Statistics
Matches: 256, Mismatches: 57, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
57 3 0.01
58 179 0.70
59 51 0.20
60 23 0.09
ACGTcount: A:0.23, C:0.25, G:0.12, T:0.40
Consensus pattern (58 bp):
ACCATCCCTTTTCATAGTCGATGGTCGTCACCATCCCTTTTCATAATCGATGGTCATC
Found at i:15168263 original size:87 final size:86
Alignment explanation
Indices: 15168045--15168427 Score: 318
Period size: 87 Copynumber: 4.4 Consensus size: 86
15168035 AATGATGGTC
* * * * * * * *
15168045 GAAACCATCCCTTTTCATATTTGATGTTCATCACTATCCCTTTTCATTAATCGATGGTCGTCACC
1 GAAACCATCCATTTTCATA-TCGATGGTCGTCACCATCCCTTTTCA-TAGTCGATAGTCGTCACT
* ** *
15168110 ATCCCTTTTAATTAATTAATGGTT
64 ATCCCTTTTCA-TAATCGATAGTT
** * * * *
15168134 GTCACCATCCCTTTTCATATTCGATAGTCATCACCATCCCTTTTCATAGTCGATAGTCGTCACCA
1 GAAACCATCCATTTTCATA-TCGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCGTCACTA
*
15168199 TCTCTTTTCATAATCGATAGTT
65 TCCCTTTTCATAATCGATAGTT
* ** * * * *
15168221 GAAACTATTTATTTTCATATACGATGGTTGTCACCATCCCTTTTCATAGTTGATGGTTGTCACTA
1 GAAACCATCCATTTTCATAT-CGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCGTCACTA
* * *
15168286 TCCCTTTTCATAGTTGATGGTT
65 TCCCTTTTCATAATCGATAGTT
** * * * *
15168308 GTCACCATCCCTTTTCATAGTTGATGGTCGTCATCATCCCTTTTCATAGTCGATAGTCAG-AACT
1 GAAACCATCCATTTTCATA-TCGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTC-GTCACT
* *
15168372 ATCCCTTTTCATAATCGATGGTC
64 ATCCCTTTTCATAATCGATAGTT
* * *
15168395 AAAACCATCCCTTTTCATTAATCGATGATCGTC
1 GAAACCATCCATTTTCA-T-ATCGATGGTCGTC
15168428 GATACACAAT
Statistics
Matches: 238, Mismatches: 51, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
86 1 0.00
87 158 0.66
88 38 0.16
89 41 0.17
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.39
Consensus pattern (86 bp):
GAAACCATCCATTTTCATATCGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCGTCACTAT
CCCTTTTCATAATCGATAGTT
Done.