Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 50 of 250
Found at i:15884794 original size:20 final size:19
Alignment explanation
Indices: 15884769--15884810 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
15884759 GCCATTTTAC
15884769 TTTATTTACAATTTGTAATT
1 TTTATTTAC-ATTTGTAATT
* *
15884789 TTTATTTTCTTTTGTAATT
1 TTTATTTACATTTGTAATT
15884808 TTT
1 TTT
15884811 CTTTTATTCG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.21, C:0.05, G:0.05, T:0.69
Consensus pattern (19 bp):
TTTATTTACATTTGTAATT
Found at i:15887210 original size:68 final size:67
Alignment explanation
Indices: 15887138--15887285 Score: 176
Period size: 67 Copynumber: 2.2 Consensus size: 67
15887128 CATCATGTGT
* * * *
15887138 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC-AG-CA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
15887200 ATGTAG
62 ATGTAG
* * *
15887206 ACAAGAGAGCTACAGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACAGCATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
15887271 AG
66 AG
15887273 ACAAGAGAGCTAC
1 ACAAGAGAGCTAC
15887286 GAGATAAACT
Statistics
Matches: 70, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 3 0.04
67 27 0.39
68 13 0.19
ACGTcount: A:0.33, C:0.18, G:0.28, T:0.22
Consensus pattern (67 bp):
ACAAGAGAGCTACAGCATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:15888384 original size:38 final size:38
Alignment explanation
Indices: 15888341--15888417 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
15888331 TGGAATACAT
15888341 AGAAACTATGGTATATGAAATATTGATATAATGAAATA
1 AGAAACTATGGTATATGAAATATTGATATAATGAAATA
15888379 AGAAACTATGGTATATGAAATATTGATATAATGAAATA
1 AGAAACTATGGTATATGAAATATTGATATAATGAAATA
15888417 A
1 A
15888418 ATGATATGTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.51, C:0.03, G:0.16, T:0.31
Consensus pattern (38 bp):
AGAAACTATGGTATATGAAATATTGATATAATGAAATA
Found at i:15911592 original size:31 final size:31
Alignment explanation
Indices: 15911549--15911628 Score: 108
Period size: 31 Copynumber: 2.6 Consensus size: 31
15911539 CTCTGCATAT
*
15911549 ACTGGGCCGAAGCCTTTACATTATTCATACC
1 ACTGTGCCGAAGCCTTTACATTATTCATACC
* * *
15911580 ACTAG-GCTGAAGCCTTTTCATTATTCATATC
1 ACT-GTGCCGAAGCCTTTACATTATTCATACC
15911611 ACTGTGCCGAAGCCTTTA
1 ACTGTGCCGAAGCCTTTA
15911629 TTGTAAACGG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
30 1 0.02
31 40 0.95
32 1 0.02
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.33
Consensus pattern (31 bp):
ACTGTGCCGAAGCCTTTACATTATTCATACC
Found at i:15911876 original size:25 final size:25
Alignment explanation
Indices: 15911848--15911942 Score: 136
Period size: 25 Copynumber: 3.8 Consensus size: 25
15911838 CTCTTTTAAT
* * *
15911848 AACTGGGGCAAAGTCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
15911873 AACTGGGGTAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
15911898 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
* *
15911923 AACTGAGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
15911943 GCACTTCCTC
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 63 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.28
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:15911878 original size:50 final size:51
Alignment explanation
Indices: 15911823--15911942 Score: 131
Period size: 50 Copynumber: 2.4 Consensus size: 51
15911813 TTTATCATAT
* * *
15911823 AACTGGAGGCCTAGCCTCTTTT-AAT-AACTGGGGCAAAGTCCTTTTTGATA
1 AACTGGAGGCATAGCC-CTTTTCAATAAACTGGGGCAAAGCCCTTTTCGATA
* * ** *
15911873 AACTGG-GGTAAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGAGGCATAGCCCTTTTCAATAAACTGGGGCAAAGCCCTTTTCGATA
15911923 AACT-GAGGCATAGCCCTTTT
1 AACTGGAGGCATAGCCCTTTT
15911943 GCACTTCCTC
Statistics
Matches: 57, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
48 5 0.09
49 8 0.14
50 44 0.77
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (51 bp):
AACTGGAGGCATAGCCCTTTTCAATAAACTGGGGCAAAGCCCTTTTCGATA
Found at i:15912001 original size:10 final size:10
Alignment explanation
Indices: 15911988--15912022 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
15911978 ATATATGTAT
*
15911988 ATATCAAGGC
1 ATATCATGGC
15911998 ATATCATGTGC
1 ATATCATG-GC
15912009 ATATCATGGC
1 ATATCATGGC
15912019 ATAT
1 ATAT
15912023 TATGCACAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 13 0.57
11 10 0.43
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (10 bp):
ATATCATGGC
Found at i:15918376 original size:25 final size:25
Alignment explanation
Indices: 15918348--15918417 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
15918338 CTCTTTTAAT
* *
15918348 AACTGGGGCAAATCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
15918373 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
15918398 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
15918418 ACACTTCCTC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:15918487 original size:11 final size:10
Alignment explanation
Indices: 15918463--15918497 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
15918453 ATATATATAT
15918463 ATATCATGGC
1 ATATCATGGC
15918473 ATATCATGTGC
1 ATATCATG-GC
15918484 ATATCATGGC
1 ATATCATGGC
15918494 ATAT
1 ATAT
15918498 TATGCACAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (10 bp):
ATATCATGGC
Found at i:15918510 original size:21 final size:21
Alignment explanation
Indices: 15918465--15918510 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
15918455 ATATATATAT
** *
15918465 ATCATGGCATATCATGTGCAT
1 ATCATGGCATATCATGCACAA
*
15918486 ATCATGGCATATTATGCACAA
1 ATCATGGCATATCATGCACAA
15918507 ATCA
1 ATCA
15918511 GAATCATATG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (21 bp):
ATCATGGCATATCATGCACAA
Found at i:15925430 original size:27 final size:26
Alignment explanation
Indices: 15925382--15925433 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
15925372 GCAAGGCTGC
*
15925382 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
15925408 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
15925434 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:15926115 original size:27 final size:27
Alignment explanation
Indices: 15926085--15926230 Score: 202
Period size: 27 Copynumber: 5.4 Consensus size: 27
15926075 GGGGCAAAAT
* * *
15926085 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
15926112 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
15926139 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
15926166 GGTAATTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
15926193 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
15926220 AGTAATTCTAC
1 GGTAATTCTAC
15926231 AACTTATCCA
Statistics
Matches: 105, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 105 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:15935177 original size:42 final size:41
Alignment explanation
Indices: 15935130--15935247 Score: 128
Period size: 42 Copynumber: 2.8 Consensus size: 41
15935120 TAGTTATTGA
*
15935130 GATTCCGTGTAAGACCATATCTGGGATATGGCCTCAATATG
1 GATTCCGTGTAAGACCATATCTGGGATATGGCATCAATATG
* * ** * *
15935171 TGATTCCGTATAAGACCATGTCAAGGACATGGCATCGATATG
1 -GATTCCGTGTAAGACCATATCTGGGATATGGCATCAATATG
* * *
15935213 GCATTTCATGTAAGACTATATCTGGGATATGGCAT
1 G-ATTCCGTGTAAGACCATATCTGGGATATGGCAT
15935248 TGATATGATA
Statistics
Matches: 60, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
41 1 0.02
42 59 0.98
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.30
Consensus pattern (41 bp):
GATTCCGTGTAAGACCATATCTGGGATATGGCATCAATATG
Found at i:15936612 original size:13 final size:13
Alignment explanation
Indices: 15936594--15936618 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15936584 AAGCCATGTG
15936594 AGGGACACGGGCC
1 AGGGACACGGGCC
15936607 AGGGACACGGGC
1 AGGGACACGGGC
15936619 GTGTGCTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.28, G:0.48, T:0.00
Consensus pattern (13 bp):
AGGGACACGGGCC
Found at i:15939803 original size:40 final size:40
Alignment explanation
Indices: 15939743--15939837 Score: 127
Period size: 40 Copynumber: 2.4 Consensus size: 40
15939733 ACTATGTTCT
15939743 GCACTAAGTGTGCGAATTGAAATAGCTTCGGCCATAAATA
1 GCACTAAGTGTGCGAATTGAAATAGCTTCGGCCATAAATA
* * * ** *
15939783 GCACTAAGTGTGCGAGTTGAAATAGCTTTGGCTATATGTG
1 GCACTAAGTGTGCGAATTGAAATAGCTTCGGCCATAAATA
*
15939823 GCACTAAATGTGCGA
1 GCACTAAGTGTGCGA
15939838 TGTCGAGATA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (40 bp):
GCACTAAGTGTGCGAATTGAAATAGCTTCGGCCATAAATA
Found at i:15940094 original size:38 final size:38
Alignment explanation
Indices: 15940052--15940134 Score: 114
Period size: 38 Copynumber: 2.2 Consensus size: 38
15940042 AGAGTATAAG
*
15940052 ATAGATGAACCTATGTGGTTGA-CAATATGGTGTATGAA
1 ATAGATGAACCTATGTGGATGATCAA-ATGGTGTATGAA
* *
15940090 ATAGATGAACTTATGTGGATGATGAAATGGTGTATGAA
1 ATAGATGAACCTATGTGGATGATCAAATGGTGTATGAA
*
15940128 TTAGATG
1 ATAGATG
15940135 CAAGGTTGTG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
38 38 0.95
39 2 0.05
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.33
Consensus pattern (38 bp):
ATAGATGAACCTATGTGGATGATCAAATGGTGTATGAA
Found at i:15945742 original size:7 final size:7
Alignment explanation
Indices: 15945730--15945757 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
15945720 CTGTAGCCCT
15945730 TTTCATA
1 TTTCATA
15945737 TTTCATA
1 TTTCATA
15945744 TTTCATA
1 TTTCATA
15945751 TTTCATA
1 TTTCATA
15945758 ACACTGGGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (7 bp):
TTTCATA
Found at i:15945782 original size:31 final size:31
Alignment explanation
Indices: 15945744--15945807 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
15945734 ATATTTCATA
*
15945744 TTTCATATTTCATAACACTGGGCTGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
15945775 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
15945806 TT
1 TT
15945808 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:15946050 original size:23 final size:24
Alignment explanation
Indices: 15946001--15946072 Score: 85
Period size: 23 Copynumber: 3.0 Consensus size: 24
15945991 GCTTTATCAT
*
15946001 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
15946026 ATAACTGGGGCA-AAGTCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
15946049 ATATCTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
15946073 CACTTCCTCC
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
23 17 0.41
24 16 0.39
25 8 0.20
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:15946146 original size:20 final size:20
Alignment explanation
Indices: 15946121--15946181 Score: 95
Period size: 20 Copynumber: 3.0 Consensus size: 20
15946111 TTATGAATAC
*
15946121 ATCATGTGCATAACATACAT
1 ATCATGTGCATATCATACAT
*
15946141 ATCATGTGCATATCATACGT
1 ATCATGTGCATATCATACAT
*
15946161 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
15946181 A
1 A
15946182 CCATATTTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:15946704 original size:8 final size:8
Alignment explanation
Indices: 15946691--15946718 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
15946681 AAATGCCAGA
15946691 ATTTCGGC
1 ATTTCGGC
15946699 ATTTCGGC
1 ATTTCGGC
15946707 ATTTCGGC
1 ATTTCGGC
15946715 ATTT
1 ATTT
15946719 ATCGCTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.14, C:0.21, G:0.21, T:0.43
Consensus pattern (8 bp):
ATTTCGGC
Found at i:15948045 original size:42 final size:42
Alignment explanation
Indices: 15947994--15948082 Score: 117
Period size: 42 Copynumber: 2.1 Consensus size: 42
15947984 ATGGCCTCGG
* *
15947994 TATGTTATTTCATATAAGACCATGTCA-AGGACATGGCATTGA
1 TATGATATTTCATATAAGACCATATCAGA-GACATGGCATTGA
* * *
15948036 TATGATATTTCATGTAAGACCATATCTGAGATATGGCATTGA
1 TATGATATTTCATATAAGACCATATCAGAGACATGGCATTGA
15948078 TATGA
1 TATGA
15948083 AATTATATGT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
42 40 0.98
43 1 0.02
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.35
Consensus pattern (42 bp):
TATGATATTTCATATAAGACCATATCAGAGACATGGCATTGA
Found at i:15951273 original size:25 final size:25
Alignment explanation
Indices: 15951209--15951301 Score: 91
Period size: 25 Copynumber: 3.6 Consensus size: 25
15951199 CATTTCAACC
15951209 CACAGCTCATGTGAGCAGGC-CC-ATTTT
1 CACAGCTCATGTGAGC--GCACCGA--TT
* *
15951236 CACAGTTCGTGTGAGCGCACCGATT
1 CACAGCTCATGTGAGCGCACCGATT
**
15951261 CACAGCTCATGTGAGCATACCGATT
1 CACAGCTCATGTGAGCGCACCGATT
*
15951286 CACAGCTCGTGTGAGC
1 CACAGCTCATGTGAGC
15951302 ATACATGTAC
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
25 40 0.70
26 2 0.04
27 15 0.26
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.24
Consensus pattern (25 bp):
CACAGCTCATGTGAGCGCACCGATT
Found at i:15951302 original size:25 final size:25
Alignment explanation
Indices: 15951234--15951305 Score: 108
Period size: 25 Copynumber: 2.9 Consensus size: 25
15951224 CAGGCCCATT
* **
15951234 TTCACAGTTCGTGTGAGCGCACCGA
1 TTCACAGCTCGTGTGAGCATACCGA
*
15951259 TTCACAGCTCATGTGAGCATACCGA
1 TTCACAGCTCGTGTGAGCATACCGA
15951284 TTCACAGCTCGTGTGAGCATAC
1 TTCACAGCTCGTGTGAGCATAC
15951306 ATGTACAAGA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (25 bp):
TTCACAGCTCGTGTGAGCATACCGA
Found at i:15954380 original size:47 final size:47
Alignment explanation
Indices: 15954320--15954449 Score: 190
Period size: 47 Copynumber: 2.8 Consensus size: 47
15954310 GTGCGAGGGA
* *
15954320 TACCTTGATTTGGCTACGAGCCATGGTATAGGTATTCAGAGG-GGAGT
1 TACCTTGATTTGGCTACGAGCCATGGTATAGGTACTCAG-GGAGAAGT
* * * *
15954367 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCCGGGATAAGT
1 TACCTTGATTTGGCTACGAGCCATGGTATAGGTACTCAGGGAGAAGT
15954414 TACCTTGATTTGGCTACGAGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGAGCCATGGTATAGGTACT
15954450 TATAGATTGA
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
46 2 0.03
47 72 0.97
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGAGCCATGGTATAGGTACTCAGGGAGAAGT
Found at i:15956738 original size:27 final size:27
Alignment explanation
Indices: 15956708--15956780 Score: 110
Period size: 27 Copynumber: 2.7 Consensus size: 27
15956698 AGATAGAATG
15956708 ACTATTTTGCCCTTATGTGGCAAAATA
1 ACTATTTTGCCCTTATGTGGCAAAATA
* *
15956735 ACTATTTTTCCCTTATGTGGCAAAATG
1 ACTATTTTGCCCTTATGTGGCAAAATA
* *
15956762 ACGATTTTGCTCTTATGTG
1 ACTATTTTGCCCTTATGTG
15956781 ATAAAGTGAC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.25, C:0.18, G:0.16, T:0.41
Consensus pattern (27 bp):
ACTATTTTGCCCTTATGTGGCAAAATA
Found at i:15956812 original size:27 final size:27
Alignment explanation
Indices: 15956796--15956952 Score: 197
Period size: 27 Copynumber: 5.8 Consensus size: 27
15956786 GTGACCGAAA
* *
15956796 TACCCCTGTAAGGTAAAATAACTTTAT
1 TACCCCTGTAAGGTAAAATGACTGTAT
*
15956823 TACCCCTGTAGGGTAAAATGACTGTAT
1 TACCCCTGTAAGGTAAAATGACTGTAT
* *
15956850 TACCCCTGTATGGTAAAATGACTATAT
1 TACCCCTGTAAGGTAAAATGACTGTAT
* *
15956877 TACCCCCGTAAGGTAAAATGATTGTAT
1 TACCCCTGTAAGGTAAAATGACTGTAT
* * * *
15956904 TACCCCTGTAGGGTAAAATAACTATAA
1 TACCCCTGTAAGGTAAAATGACTGTAT
* *
15956931 TACCCTTGTAAGATAAAATGAC
1 TACCCCTGTAAGGTAAAATGAC
15956953 AGATTTGTTC
Statistics
Matches: 111, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 111 1.00
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (27 bp):
TACCCCTGTAAGGTAAAATGACTGTAT
Found at i:15956865 original size:54 final size:54
Alignment explanation
Indices: 15956796--15956952 Score: 224
Period size: 54 Copynumber: 2.9 Consensus size: 54
15956786 GTGACCGAAA
* *
15956796 TACCCCTGTAAGGTAAAATAACTTTATTACCCCTGTAGGGTAAAATGACTGTAT
1 TACCCCTGTAAGGTAAAATAACTATATTACCCCTGTAAGGTAAAATGACTGTAT
* * * *
15956850 TACCCCTGTATGGTAAAATGACTATATTACCCCCGTAAGGTAAAATGATTGTAT
1 TACCCCTGTAAGGTAAAATAACTATATTACCCCTGTAAGGTAAAATGACTGTAT
* * * *
15956904 TACCCCTGTAGGGTAAAATAACTATAATACCCTTGTAAGATAAAATGAC
1 TACCCCTGTAAGGTAAAATAACTATATTACCCCTGTAAGGTAAAATGAC
15956953 AGATTTGTTC
Statistics
Matches: 90, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (54 bp):
TACCCCTGTAAGGTAAAATAACTATATTACCCCTGTAAGGTAAAATGACTGTAT
Found at i:15956889 original size:81 final size:81
Alignment explanation
Indices: 15956796--15956952 Score: 226
Period size: 81 Copynumber: 1.9 Consensus size: 81
15956786 GTGACCGAAA
* * * *
15956796 TACCCCTGTAAGGTAAAATAACTT-TATTACCCCTGTAGGGTAAAATGACTGTATTACCCCTGTA
1 TACCCCCGTAAGGTAAAATAA-TTGTATTACCCCTGTAGGGTAAAATAACTATAATACCCCTGTA
* *
15956860 TGGTAAAATGACTATAT
65 AGATAAAATGACTATAT
* *
15956877 TACCCCCGTAAGGTAAAATGATTGTATTACCCCTGTAGGGTAAAATAACTATAATACCCTTGTAA
1 TACCCCCGTAAGGTAAAATAATTGTATTACCCCTGTAGGGTAAAATAACTATAATACCCCTGTAA
15956942 GATAAAATGAC
66 GATAAAATGAC
15956953 AGATTTGTTC
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
80 2 0.03
81 65 0.97
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (81 bp):
TACCCCCGTAAGGTAAAATAATTGTATTACCCCTGTAGGGTAAAATAACTATAATACCCCTGTAA
GATAAAATGACTATAT
Found at i:15957132 original size:23 final size:18
Alignment explanation
Indices: 15957084--15957119 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
15957074 CTGTACTGGT
15957084 ATGGCTTTAAGCCTACTA
1 ATGGCTTTAAGCCTACTA
15957102 ATGGCTTTAAGCCTACTA
1 ATGGCTTTAAGCCTACTA
15957120 TACTGGCAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (18 bp):
ATGGCTTTAAGCCTACTA
Found at i:15957320 original size:18 final size:17
Alignment explanation
Indices: 15957273--15957320 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
15957263 TCTGCTTGCG
*
15957273 TACTGCACTGATTCCTGT
1 TACTGCACTGA-TCATGT
* *
15957291 TACTGTATTGATCATGGT
1 TACTGCACTGATCAT-GT
15957309 TACTGCACTGAT
1 TACTGCACTGAT
15957321 TACTATTACT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
17 3 0.12
18 21 0.88
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.40
Consensus pattern (17 bp):
TACTGCACTGATCATGT
Found at i:15962424 original size:40 final size:40
Alignment explanation
Indices: 15962369--15962448 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
15962359 CGTTTTTGAA
15962369 ACTGTTAAAGATTTTGAATTTTTCCATTGATGAATCTATG
1 ACTGTTAAAGATTTTGAATTTTTCCATTGATGAATCTATG
15962409 ACTGTTAAAGATTTTGAATTTTTCCATTGATGAATCTATG
1 ACTGTTAAAGATTTTGAATTTTTCCATTGATGAATCTATG
15962449 TCATTTTAGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.30, C:0.10, G:0.15, T:0.45
Consensus pattern (40 bp):
ACTGTTAAAGATTTTGAATTTTTCCATTGATGAATCTATG
Found at i:15963061 original size:29 final size:29
Alignment explanation
Indices: 15963026--15963268 Score: 201
Period size: 29 Copynumber: 8.4 Consensus size: 29
15963016 ATCATCGAAC
* *
15963026 ATGAAAAAGGATAGCTTCGACTATCGATT
1 ATGAAAAGGGATAGCTTCGACTATCAATT
*
15963055 ATGAAAAGGGATAACTTC-AGCTATCAATT
1 ATGAAAAGGGATAGCTTCGA-CTATCAATT
**
15963084 ATGAAAAGGGATAGCTTCGGTTATCAGA-T
1 ATGAAAAGGGATAGCTTCGACTATCA-ATT
* * * * *
15963113 ATGAAAAAGGATATCTTTGGCTATCGATT
1 ATGAAAAGGGATAGCTTCGACTATCAATT
* * **
15963142 ATGAAAAGGGATAG-TGACGACCATCAACA
1 ATGAAAAGGGATAGCT-TCGACTATCAATT
* ** * *
15963171 ATGAAAAGGGAT-GGTGAAGACCATCAAAT
1 ATGAAAAGGGATAGCT-TCGACTATCAATT
*
15963200 ATGAAAAGGGATAGCTTC-AGCTATCGATT
1 ATGAAAAGGGATAGCTTCGA-CTATCAATT
* *
15963229 ATGAAAAGGG-TAGTTTCGGCTATCAATT
1 ATGAAAAGGGATAGCTTCGACTATCAATT
15963257 ATGAAAAGGGAT
1 ATGAAAAGGGAT
15963269 GGTGATGAAC
Statistics
Matches: 172, Mismatches: 32, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
28 29 0.17
29 140 0.81
30 3 0.02
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.26
Consensus pattern (29 bp):
ATGAAAAGGGATAGCTTCGACTATCAATT
Found at i:15963116 original size:58 final size:58
Alignment explanation
Indices: 15963026--15963268 Score: 226
Period size: 58 Copynumber: 4.2 Consensus size: 58
15963016 ATCATCGAAC
* *
15963026 ATGAAAAAGGATAGCTTCGACTATCGATTATGAAAAGGGATAACTTCAGCTATCAATT
1 ATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATAGCTTCAGCTATCAATT
** * * ** *
15963084 ATGAAAAGGGATAGCTTCGGTTATCAGA-TATGAAAAAGGATATCTTTGGCTATCGATT
1 ATGAAAAGGGATAGCTTCGACTATC-GATTATGAAAAGGGATAGCTTCAGCTATCAATT
* * * ** * ** * *
15963142 ATGAAAAGGGATAG-TGACGACCATCAACAATGAAAAGGGAT-GGTGAAGACCATCAAAT
1 ATGAAAAGGGATAGCT-TCGACTATCGATTATGAAAAGGGATAGCTTCAG-CTATCAATT
* *
15963200 ATGAAAAGGGATAGCTTC-AGCTATCGATTATGAAAAGGG-TAGTTTCGGCTATCAATT
1 ATGAAAAGGGATAGCTTCGA-CTATCGATTATGAAAAGGGATAGCTTCAGCTATCAATT
15963257 ATGAAAAGGGAT
1 ATGAAAAGGGAT
15963269 GGTGATGAAC
Statistics
Matches: 144, Mismatches: 34, Indels: 15
0.75 0.18 0.08
Matches are distributed among these distances:
57 25 0.17
58 116 0.81
59 3 0.02
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.26
Consensus pattern (58 bp):
ATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATAGCTTCAGCTATCAATT
Found at i:15963291 original size:87 final size:85
Alignment explanation
Indices: 15963026--15963293 Score: 247
Period size: 87 Copynumber: 3.1 Consensus size: 85
15963016 ATCATCGAAC
** *
15963026 ATGAAAAAGGATAGCTTCGACTATCGATTATGAAAAGGGATAACTTCAGCTATCAATTATGAAAA
1 ATGAAAAAGGATAGCTTCG-CTATCGATTATGAAAAGGGATAGTTTCGGCTATCAATTATGAAAA
* **
15963091 GGGATAGCT--TCG-GTTATCAGAT
65 GGGAT-GGTGAT-GAACT-TC-GAT
* * ** * * **
15963113 ATGAAAAAGGATATCTTTGGCTATCGATTATGAAAAGGGATAGTGACGACCATCAACAATGAAAA
1 ATGAAAAAGGATAGC-TTCGCTATCGATTATGAAAAGGGATAGTTTCGGCTATCAATTATGAAAA
* * * *
15963178 GGGATGGTGAAGACCATCAAAT
65 GGGATGGTGATGAACTTC-GAT
*
15963200 ATGAAAAGGGATAGCTTCAGCTATCGATTATGAAAAGGG-TAGTTTCGGCTATCAATTATGAAAA
1 ATGAAAAAGGATAGCTTC-GCTATCGATTATGAAAAGGGATAGTTTCGGCTATCAATTATGAAAA
15963264 GGGATGGTGATGAACTTCGATT
65 GGGATGGTGATGAACTTCGA-T
15963286 AATGAAAA
1 -ATGAAAA
15963294 TGGGTGGTTT
Statistics
Matches: 144, Mismatches: 30, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
85 1 0.01
86 39 0.27
87 101 0.70
88 3 0.02
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.26
Consensus pattern (85 bp):
ATGAAAAAGGATAGCTTCGCTATCGATTATGAAAAGGGATAGTTTCGGCTATCAATTATGAAAAG
GGATGGTGATGAACTTCGAT
Found at i:15963313 original size:87 final size:87
Alignment explanation
Indices: 15963135--15963339 Score: 207
Period size: 87 Copynumber: 2.4 Consensus size: 87
15963125 ATCTTTGGCT
*
15963135 ATCGATTATGAAAAGGGATAGTGACGACCATCAACAATGAAAAGGGATGGTGAAGACCATCAAAT
1 ATCGATTATGAAAAGGGATAGTGACGACCATCAACAATGAAAAGGGATGGTGAAGAACATCAAAT
* *
15963200 ATGAAAAGGGATAGCTTCAGCT
66 ATGAAAAGGGATAGCTTCAACC
** * * ** * * * *
15963222 ATCGATTATGAAAAGGG-TAGTTTCGGCTATCAATTATGAAAAGGGATGGTGATGAACTTCGATT
1 ATCGATTATGAAAAGGGATAGTGACGACCATCAACAATGAAAAGGGATGGTGAAGAACATCAAAT
* *
15963286 AATGAAAATGGG-TGGTTTCAACC
66 -ATGAAAA-GGGATAGCTTCAACC
* * * *
15963309 ATCGAATATGAAAAGAGACAGTTACGACCAT
1 ATCGATTATGAAAAGGGATAGTGACGACCAT
15963340 TGTTTAGCAC
Statistics
Matches: 94, Mismatches: 21, Indels: 5
0.78 0.17 0.04
Matches are distributed among these distances:
86 36 0.38
87 46 0.49
88 12 0.13
ACGTcount: A:0.39, C:0.13, G:0.25, T:0.24
Consensus pattern (87 bp):
ATCGATTATGAAAAGGGATAGTGACGACCATCAACAATGAAAAGGGATGGTGAAGAACATCAAAT
ATGAAAAGGGATAGCTTCAACC
Found at i:15965230 original size:20 final size:20
Alignment explanation
Indices: 15965205--15965242 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
15965195 GTTATAAAGG
15965205 TTAGTTGATTAAGCTTAGCA
1 TTAGTTGATTAAGCTTAGCA
15965225 TTAGTTGATTAAGCTTAG
1 TTAGTTGATTAAGCTTAG
15965243 AAAATGTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (20 bp):
TTAGTTGATTAAGCTTAGCA
Found at i:15967507 original size:14 final size:14
Alignment explanation
Indices: 15967488--15967516 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
15967478 TTGTAGGCCT
15967488 AGGTCAAGATAGGC
1 AGGTCAAGATAGGC
15967502 AGGTCAAGATAGGC
1 AGGTCAAGATAGGC
15967516 A
1 A
15967517 AGCCGCGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.14, G:0.34, T:0.14
Consensus pattern (14 bp):
AGGTCAAGATAGGC
Found at i:15973675 original size:55 final size:54
Alignment explanation
Indices: 15973586--15973841 Score: 246
Period size: 55 Copynumber: 4.8 Consensus size: 54
15973576 CATTAGGGTT
**
15973586 CAAGGATACCATGTAAGACCATG-CTAAGGTATGGCAATTGGTAAGGTTTCTAAGG
1 CAAGGATACCATGTAAGACCATGTC-AAGACATGGCAATTGGTAA-GTTTCTAAGG
* * ** *
15973641 CAAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTAATAAGTTACTATAAGG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTT--TCTAAGG
* * * *
15973696 CAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGG
1 C-AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTC-TAAGG
*
15973749 CAAGGATACCATGTAAGACCATGTCAAAACATGGCAA-TGGTAAGTTTC-AA--
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGG
* * *
15973799 -AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAG
15973842 GTACCCGTGT
Statistics
Matches: 168, Mismatches: 25, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
49 39 0.23
52 7 0.04
53 40 0.24
54 11 0.07
55 66 0.39
56 5 0.03
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (54 bp):
CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGG
Found at i:15974059 original size:16 final size:16
Alignment explanation
Indices: 15974038--15974068 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15974028 ATAAATTTGA
15974038 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
15974054 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
15974069 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:15976701 original size:20 final size:21
Alignment explanation
Indices: 15976663--15976701 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
15976653 TTTATGGTTT
*
15976663 TAAATAATTTTGGGGTAAAAG
1 TAAATAATTTTAGGGTAAAAG
*
15976684 TAAAT-ATTTTAGGTTAAA
1 TAAATAATTTTAGGGTAAA
15976702 TTGGAATTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.44, C:0.00, G:0.18, T:0.38
Consensus pattern (21 bp):
TAAATAATTTTAGGGTAAAAG
Found at i:15979673 original size:30 final size:30
Alignment explanation
Indices: 15979637--15979718 Score: 137
Period size: 30 Copynumber: 2.7 Consensus size: 30
15979627 AATTTCAGGC
* * *
15979637 CTAGGGGTAAAATGGTCATTTTGTTGAAGT
1 CTAGGGGCAAATTGGTCATTTTGTTAAAGT
15979667 CTAGGGGCAAATTGGTCATTTTGTTAAAGT
1 CTAGGGGCAAATTGGTCATTTTGTTAAAGT
15979697 CTAGGGGCAAATTGGTCATTTT
1 CTAGGGGCAAATTGGTCATTTT
15979719 TCCCAATTAT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.26, C:0.10, G:0.28, T:0.37
Consensus pattern (30 bp):
CTAGGGGCAAATTGGTCATTTTGTTAAAGT
Found at i:15980302 original size:50 final size:49
Alignment explanation
Indices: 15980051--15980422 Score: 242
Period size: 50 Copynumber: 7.8 Consensus size: 49
15980041 TCACTTATGT
15980051 GAGCTAGTGTAAGA-CATGTCT-GTGACAT-GCATCGGCCAC--ATTAT-GA
1 GAGCTAGTGTAAGACCATGTCTAG-GACATGGCATCGG-CACGGA-TATGGA
* * * * * ** * *
15980097 GAGCCAGTATAAGATCATGTCTGGGACATGGCATCGACATTGAGA-CGA
1 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCACGGATATGGA
* * * * * * *
15980145 GTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGC-CTCGAGACGTA
1 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCAC-GGATATGGA
* * * * *
15980192 -AGCCAGTGTAAGA-CATGTTTGGGACAT-GCATTGGCTAC-GAGAT---
1 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGC-ACGGATATGGA
* * *
15980235 GTGTTAATGTAAGACCATGTCTAGGACATGGCATCGGCACGGATATGCGA
1 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCACGGATATG-GA
* * *
15980285 GAGCTAGTGCAAGACCATGTCTGGGACATGGCATCGGTACGGATATGTGA
1 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCACGGATATG-GA
* *
15980335 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGATGAT-GA
1 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCAC-GGAT-ATGGA
* * *
15980384 TAACCAGTGTAAGACCATGTCTAGGACATGGCATCGGCA
1 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCA
15980423 TCTTACCCCA
Statistics
Matches: 263, Mismatches: 42, Indels: 38
0.77 0.12 0.11
Matches are distributed among these distances:
44 9 0.03
45 14 0.05
46 67 0.25
47 29 0.11
48 22 0.08
49 38 0.14
50 82 0.31
51 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (49 bp):
GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCACGGATATGGA
Found at i:15980355 original size:100 final size:99
Alignment explanation
Indices: 15980051--15980420 Score: 271
Period size: 94 Copynumber: 3.9 Consensus size: 99
15980041 TCACTTATGT
* * * ** *
15980051 GAGCTAGTGTAAGA-CATGTCT-GTGACAT-GCATCGGCCAC-ATTATGAGAGCCAGTATAAGAT
1 GAGCTAGTGTAAGACCATGTCTAG-GACATGGCATCGGCCTCGATGATGAGAACCAGTGCAAGAC
* *
15980112 CATGTCTGGGACATGGCATC-G-AC--AT-TGAGA
65 CATGTCTAGGACATGGCATCGGTACGGATATGTGA
* * * * *
15980142 CGAGTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGA-GACGTA-AGCCAGTGTAA
1 -GA--GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGATGATG-AGAACCAGTGCAA
* * * *
15980203 GA-CATGTTTGGGACAT-GCATTGGCTAC-GAGATGT--
62 GACCATGTCTAGGACATGGCATCGG-TACGGATATGTGA
* * * * *
15980237 --GTTAATGTAAGACCATGTCTAGGACATGGCATCGGCAC-GGAT-ATGCGAGAGCTAGTGCAAG
1 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGC-CTCGATGAT--GAGAACCAGTGCAAG
*
15980298 ACCATGTCTGGGACATGGCATCGGTACGGATATGTGA
63 ACCATGTCTAGGACATGGCATCGGTACGGATATGTGA
* * *
15980335 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGATAACCAGTGTAAGACC
1 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGATGATGAGAACCAGTGCAAGACC
15980400 ATGTCTAGGACATGGCATCGG
66 ATGTCTAGGACATGGCATCGG
15980421 CATCTTACCC
Statistics
Matches: 223, Mismatches: 29, Indels: 45
0.75 0.10 0.15
Matches are distributed among these distances:
90 10 0.04
91 13 0.06
92 16 0.07
93 16 0.07
94 59 0.26
95 21 0.09
96 13 0.06
97 2 0.01
99 35 0.16
100 36 0.16
101 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (99 bp):
GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGATGATGAGAACCAGTGCAAGACC
ATGTCTAGGACATGGCATCGGTACGGATATGTGA
Found at i:15987983 original size:40 final size:40
Alignment explanation
Indices: 15987814--15987976 Score: 213
Period size: 40 Copynumber: 4.1 Consensus size: 40
15987804 CTAACGGGGT
* * *
15987814 TAAGTCCCGAAGACAATTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGC
* * *
15987854 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCAGGC
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGC
* *
15987894 TAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-TCCGGGC
*
15987934 TAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-TCCGGGC
15987974 TAA
1 TAA
15987977 CACCCGACGG
Statistics
Matches: 111, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGC
Found at i:15996100 original size:40 final size:40
Alignment explanation
Indices: 15996040--15996209 Score: 166
Period size: 40 Copynumber: 4.3 Consensus size: 40
15996030 CTAACGGGGT
* * * * *
15996040 TAAGTCCTGAAGACAATTGTGCTAGTGATTA-ATTCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTATA-TCCGGGC
* *
15996080 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGC
*
15996120 TAAGTCCCGAAGGCATTTGTGCTAGTGACCATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGC
** * * * **
15996160 TAACACCCGACGGC-CTTGTGCGAGTGGTTATATCC-GGC
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGC
*
15996198 TAAATCCCGAAG
1 TAAGTCCCGAAG
15996210 ATAATGGGGT
Statistics
Matches: 108, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
38 12 0.11
39 16 0.15
40 79 0.73
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGC
Found at i:15999773 original size:95 final size:94
Alignment explanation
Indices: 15999648--15999836 Score: 256
Period size: 95 Copynumber: 2.0 Consensus size: 94
15999638 GGGAAATCTT
* * * *
15999648 ACACATATCGATGCTGATGCCATATCCCAGATATGTTCTTACAC-AGGCTTTCATATATCGAGGC
1 ACACATATCGAAGCCGATGCCATATCCCAGACATGGTCTTACACTA-GCTTTCATATATCGAGGC
15999712 CGATGCCATGTCCCAAACATGGTCTTACACTG
65 CGATG-CATGTCCCAAACAT-GTCTTACACTG
* * *
15999744 ACACATATC-AAGCCGATGCCATGTTCCAGACATGGTCTTACACTAGCTTTCATATCTCGAGGCC
1 ACACATATCGAAGCCGATGCCATATCCCAGACATGGTCTTACACTAGCTTTCATATATCGAGGCC
* *
15999808 GATGCGTGTCCCAGACATGTCTTACACTG
66 GATGCATGTCCCAAACATGTCTTACACTG
15999837 GCTTATATAA
Statistics
Matches: 83, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
93 11 0.13
94 12 0.14
95 50 0.60
96 10 0.12
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (94 bp):
ACACATATCGAAGCCGATGCCATATCCCAGACATGGTCTTACACTAGCTTTCATATATCGAGGCC
GATGCATGTCCCAAACATGTCTTACACTG
Found at i:16001474 original size:20 final size:23
Alignment explanation
Indices: 16001430--16001477 Score: 66
Period size: 24 Copynumber: 2.2 Consensus size: 23
16001420 AAAAGCGAAC
16001430 TAAATAAAAAAGCTATATTAGTAT
1 TAAATAAAAAA-CTATATTAGTAT
16001454 TAAATAAAAAA-TA-ATTA-TAT
1 TAAATAAAAAACTATATTAGTAT
16001474 TAAA
1 TAAA
16001478 ATTAAATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.29
21 4 0.17
22 2 0.08
24 11 0.46
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.33
Consensus pattern (23 bp):
TAAATAAAAAACTATATTAGTAT
Found at i:16001601 original size:21 final size:22
Alignment explanation
Indices: 16001577--16001623 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
16001567 TTTCGATATC
*
16001577 AAACTAATTGAAATGCTAA-CA
1 AAACTAATTGAAATGCAAACCA
16001598 AAACTAATTGAAATGCAAACCA
1 AAACTAATTGAAATGCAAACCA
16001620 AAAC
1 AAAC
16001624 AGCTCTTCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 18 0.75
22 6 0.25
ACGTcount: A:0.55, C:0.17, G:0.09, T:0.19
Consensus pattern (22 bp):
AAACTAATTGAAATGCAAACCA
Found at i:16002356 original size:15 final size:15
Alignment explanation
Indices: 16002332--16002361 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
16002322 AAAAATTAGA
16002332 TTAGGATTTTAGGGT
1 TTAGGATTTTAGGGT
*
16002347 TTAGGGTTTTAGGGT
1 TTAGGATTTTAGGGT
16002362 ATTTAAGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.47
Consensus pattern (15 bp):
TTAGGATTTTAGGGT
Found at i:16002357 original size:96 final size:95
Alignment explanation
Indices: 16002154--16002357 Score: 270
Period size: 96 Copynumber: 2.1 Consensus size: 95
16002144 GTTTTTAAAT
* * * *
16002154 TTTAGGGTTTTAAGGAAAAAATTAAATAAATTAGGGTTTAGTGTTTATTAATTAAATTAATTACT
1 TTTAGGGTTTTAAGAAAAAAATCAAATAAATTAGGGTTTAGTGATTATTAAGTAAATTAATTACT
* *
16002219 AATTTTAAAAAATTAGATTATGGTTTAGTG
66 AATTTAAAAAAATTAGATTATGGTTTAGGG
* *
16002249 TTTATGGTTTTTAAGAAAAAAATCAAATAAATTAGGGTTTAG-GATTACTTGAGTAAATTAATTA
1 TTTA-GGGTTTTAAGAAAAAAATCAAATAAATTAGGGTTTAGTGATTA-TTAAGTAAATTAATTA
16002313 -TAAATTTAAAAAAATTAGATTA-GGATTTTAGGG
64 CT-AATTTAAAAAAATTAGATTATGG--TTTAGGG
16002346 TTTAGGGTTTTA
1 TTTAGGGTTTTA
16002358 GGGTATTTAA
Statistics
Matches: 95, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
95 11 0.12
96 74 0.78
97 10 0.11
ACGTcount: A:0.40, C:0.01, G:0.17, T:0.42
Consensus pattern (95 bp):
TTTAGGGTTTTAAGAAAAAAATCAAATAAATTAGGGTTTAGTGATTATTAAGTAAATTAATTACT
AATTTAAAAAAATTAGATTATGGTTTAGGG
Found at i:16002601 original size:126 final size:126
Alignment explanation
Indices: 16002444--16002730 Score: 459
Period size: 126 Copynumber: 2.3 Consensus size: 126
16002434 AAAAGCTTCT
* *
16002444 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGAAGTGTCTGCGCAA
1 ACGTGGACGCTCTTTTGCTACAGTGGTCTCTGAAAAAATAATTTTGAGAAGAAGTGTCTGCACAA
* * *
16002509 ATAGTGGT-AAAAACGCTTCAAGCAGGATGTATTTTCAGCAAAATTACTGGAAGAAGCTCCC
66 ATAGT-GTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCC
* * *
16002570 ACGTGGATGCTCTTTTGCTACAGTGGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCATAA
1 ACGTGGACGCTCTTTTGCTACAGTGGTCTCTGAAAAAATAATTTTGAGAAGAAGTGTCTGCACAA
* *
16002635 ATAGTGTCAAAAACGCTTTAAGCATGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCC
*
16002696 ACGTGGACGCTCTTTTGCTACAGTGGTTTCTGAAA
1 ACGTGGACGCTCTTTTGCTACAGTGGTCTCTGAAA
16002731 TAACTTGGGC
Statistics
Matches: 148, Mismatches: 12, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
125 2 0.01
126 146 0.99
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.29
Consensus pattern (126 bp):
ACGTGGACGCTCTTTTGCTACAGTGGTCTCTGAAAAAATAATTTTGAGAAGAAGTGTCTGCACAA
ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCC
Found at i:16005284 original size:115 final size:116
Alignment explanation
Indices: 16004920--16005417 Score: 883
Period size: 116 Copynumber: 4.3 Consensus size: 116
16004910 TTTATATTTT
* *
16004920 ATTACATGAAATAATATAAAAATATTCAAAATATTG-CTTTATTTAAAATAATTTTCATTTTATT
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGTC-TTATTTAAAATAATTTCCATTTTATT
* * * *
16004984 AAAAATATAAAAGTAAATTATAATTACTTTATTTAGAACAACCTTTTATATT
65 AAAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
* * *
16005036 ATCACATGAAATAATATACAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGTCTTATTTAAAATAATTTCCATTTTATTA
16005101 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
16005152 ATTACATGAAATAATATAAAAATATTCAAAATGTTGTCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGTCTTATTTAAAATAATTTCCATTTTATTA
16005217 AAAA-ATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
16005267 ATTACATGAAATAATATAAAAATATTCAAAATGTTGTCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGTCTTATTTAAAATAATTTCCATTTTATTA
16005332 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
*
16005383 ATTACATGAAATAATATAAAAAGATTCAAAATGTT
1 ATTACATGAAATAATATAAAAATATTCAAAATGTT
16005418 TGTACAAATA
Statistics
Matches: 368, Mismatches: 12, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
115 115 0.31
116 252 0.68
117 1 0.00
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (116 bp):
ATTACATGAAATAATATAAAAATATTCAAAATGTTGTCTTATTTAAAATAATTTCCATTTTATTA
AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
Found at i:16005324 original size:231 final size:232
Alignment explanation
Indices: 16004920--16005417 Score: 883
Period size: 231 Copynumber: 2.2 Consensus size: 232
16004910 TTTATATTTT
* *
16004920 ATTACATGAAATAATATAAAAATATTCAAAATATTGCTTTATTTAAAATAATTTTCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCTTTATTTAAAATAATTTCCATTTTATTA
* * *
16004985 AAAATATAAAAGTAAATTATAATTACTTTATTTAGAACAACCTTTTATATTATCACATGAAATAA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATATAATCACATGAAATAA
*
16005050 TATACAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTAAAAATATAAAAGTA
131 TATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTAAAAATATAAAAGTA
16005115 AATTACAATTACTTTATTTAAAACAACCTTTTATCTA
196 AATTACAATTACTTTATTTAAAACAACCTTTTATCTA
16005152 ATTACATGAAATAATATAAAAATATTCAAAATGTTG-TCTTATTTAAAATAATTTCCATTTTATT
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCT-TTATTTAAAATAATTTCCATTTTATT
* *
16005216 AAAAA-ATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTAATTACATGAAATA
65 AAAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATATAATCACATGAAATA
*
16005280 ATATAAAAATATTCAAAATGTTGTCTTATTTAAAATAATTTCCATTTTATTAAAAATATAAAAGT
130 ATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTAAAAATATAAAAGT
16005345 AAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
195 AAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
*
16005383 ATTACATGAAATAATATAAAAAGATTCAAAATGTT
1 ATTACATGAAATAATATAAAAATATTCAAAATGTT
16005418 TGTACAAATA
Statistics
Matches: 255, Mismatches: 10, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
231 190 0.75
232 65 0.25
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (232 bp):
ATTACATGAAATAATATAAAAATATTCAAAATGTTGCTTTATTTAAAATAATTTCCATTTTATTA
AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATATAATCACATGAAATAA
TATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTAAAAATATAAAAGTA
AATTACAATTACTTTATTTAAAACAACCTTTTATCTA
Found at i:16005827 original size:18 final size:18
Alignment explanation
Indices: 16005801--16005843 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
16005791 GACTAGAAAA
* *
16005801 AGGAAACATATAAGGGCT
1 AGGATACATAAAAGGGCT
16005819 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
16005837 AGGATAC
1 AGGATAC
16005844 GTACCTGGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.44, C:0.12, G:0.28, T:0.16
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:16005938 original size:30 final size:30
Alignment explanation
Indices: 16005897--16005962 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
16005887 GTTGAACTGT
*
16005897 TGGGCCCGGTGACTGTGTAGGT-CCTGTTGC
1 TGGGCCCGGTGACTGTGTAGGTGCC-GTTGA
* * *
16005927 TGGGCCGGGTGATTGTGTGGGTGCCGTTGA
1 TGGGCCCGGTGACTGTGTAGGTGCCGTTGA
16005957 TGGGCC
1 TGGGCC
16005963 TGCGTCGTCG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 29 0.94
31 2 0.06
ACGTcount: A:0.06, C:0.20, G:0.45, T:0.29
Consensus pattern (30 bp):
TGGGCCCGGTGACTGTGTAGGTGCCGTTGA
Found at i:16007602 original size:15 final size:15
Alignment explanation
Indices: 16007582--16007612 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
16007572 TTTTTATTTT
*
16007582 AAAAAATAAATTTAG
1 AAAAAATAAAATTAG
16007597 AAAAAATAAAATTAG
1 AAAAAATAAAATTAG
16007612 A
1 A
16007613 GCTTTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (15 bp):
AAAAAATAAAATTAG
Found at i:16007651 original size:22 final size:22
Alignment explanation
Indices: 16007639--16007688 Score: 77
Period size: 20 Copynumber: 2.4 Consensus size: 22
16007629 TAACGAGATT
16007639 TTTGAGAGGAATTTAAGAGAAA
1 TTTGAGAGGAATTTAAGAGAAA
*
16007661 TTTGAGA-G-ATTTGAGAGAAA
1 TTTGAGAGGAATTTAAGAGAAA
16007681 TTTGAGAG
1 TTTGAGAG
16007689 AATATTGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 18 0.69
21 1 0.04
22 7 0.27
ACGTcount: A:0.40, C:0.00, G:0.30, T:0.30
Consensus pattern (22 bp):
TTTGAGAGGAATTTAAGAGAAA
Found at i:16007662 original size:11 final size:11
Alignment explanation
Indices: 16007639--16007690 Score: 72
Period size: 11 Copynumber: 4.9 Consensus size: 11
16007629 TAACGAGATT
*
16007639 TTTGAGAGGAA
1 TTTGAGAGAAA
*
16007650 TTTAAGAGAAA
1 TTTGAGAGAAA
16007661 TTTGAGAG--A
1 TTTGAGAGAAA
16007670 TTTGAGAGAAA
1 TTTGAGAGAAA
16007681 TTTGAGAGAA
1 TTTGAGAGAA
16007691 TATTGAAAGA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
9 9 0.25
11 27 0.75
ACGTcount: A:0.42, C:0.00, G:0.29, T:0.29
Consensus pattern (11 bp):
TTTGAGAGAAA
Found at i:16007702 original size:31 final size:31
Alignment explanation
Indices: 16007639--16007702 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
16007629 TAACGAGATT
* *
16007639 TTTGAGAGGAATTTAAGAGAAATTTGAGAGA
1 TTTGAGAGAAATTTAAGAGAAATTTGAAAGA
*
16007670 TTTGAGAGAAATTTGAGAG-AATATTGAAAGA
1 TTTGAGAGAAATTTAAGAGAAAT-TTGAAAGA
16007701 TT
1 TT
16007703 GAAGATTGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 3 0.10
31 26 0.90
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.31
Consensus pattern (31 bp):
TTTGAGAGAAATTTAAGAGAAATTTGAAAGA
Found at i:16009228 original size:16 final size:16
Alignment explanation
Indices: 16009209--16009262 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
16009199 TGGGTGGGAA
*
16009209 GAAAATTGGAAAGATG
1 GAAAATTAGAAAGATG
* *
16009225 GAAAA-TCGAAAGGGTG
1 GAAAATTAGAAA-GATG
*
16009241 GAAAAGTAGAAAGATG
1 GAAAATTAGAAAGATG
16009257 GAAAAT
1 GAAAAT
16009263 ATAAATTTTC
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
15 5 0.16
16 21 0.68
17 5 0.16
ACGTcount: A:0.52, C:0.02, G:0.31, T:0.15
Consensus pattern (16 bp):
GAAAATTAGAAAGATG
Found at i:16012872 original size:111 final size:113
Alignment explanation
Indices: 16012743--16012968 Score: 316
Period size: 111 Copynumber: 2.0 Consensus size: 113
16012733 GTTCTAATTC
* * *
16012743 CAAAATTTATCCCCCTACTTTATGAAAATTGAGAAGTTAGCCT-CTT-TATTG-TTTTTTAACTA
1 CAAAATTGATCCCCCTACTTTATGAAAATTGAAAAGTTA--ATACTTATATTGTTTTTTTAACTA
16012805 AATGCTCAAGTTGTTATTTCTC-TTTTTTTTGCAAAACAATGTCTAACTA
64 AATGCTCAAGTTGTTATTTCTCTTTTTTTTTGCAAAACAATGTCTAACTA
* * *
16012854 CAAAATTGGTCCCTCTACTTTATGAAAATTGAAAAGTTAATACTTATATTGTTTTTTTTTACTAA
1 CAAAATTGATCCCCCTACTTTATGAAAATTGAAAAGTTAATACTTATATTG-TTTTTTTAACTAA
* *
16012919 ATGCTCAAGTTGTTGTTTCTCTTTTTTTTTTTCAAAACAATGTCTAACTA
65 ATGCTCAAGTTGTTATTTCTC-TTTTTTTTTGCAAAACAATGTCTAACTA
16012969 TACTTTATGA
Statistics
Matches: 101, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
109 1 0.01
110 3 0.03
111 40 0.40
113 31 0.31
115 26 0.26
ACGTcount: A:0.30, C:0.15, G:0.10, T:0.45
Consensus pattern (113 bp):
CAAAATTGATCCCCCTACTTTATGAAAATTGAAAAGTTAATACTTATATTGTTTTTTTAACTAAA
TGCTCAAGTTGTTATTTCTCTTTTTTTTTGCAAAACAATGTCTAACTA
Found at i:16013049 original size:99 final size:100
Alignment explanation
Indices: 16012869--16013064 Score: 340
Period size: 99 Copynumber: 2.0 Consensus size: 100
16012859 TTGGTCCCTC
* *
16012869 TACTTTATGAAAATTGAAAAGTTAATACTTATATTGTTTTTTTTTACTAAATGCTCAAGTTGTTG
1 TACTTTATGAAAATTGAAAAGTTAATACCTATATTGTTTTTTTTTACTAAATGCTCAAGTTGTTA
* *
16012934 TTTCTCTTTTTTTTTTTCAAAACAATGTCTAACTA
66 TTTCTCTTCTTCTTTTTCAAAACAATGTCTAACTA
*
16012969 TACTTTATGAAAATTGAAAAGTTAGTACCTATATTG-TTTTTTTTACTAAATGCTCAAGTTGTTA
1 TACTTTATGAAAATTGAAAAGTTAATACCTATATTGTTTTTTTTTACTAAATGCTCAAGTTGTTA
16013033 TTTCTCTTCTTCTTTTTCAAAACAATGTCTAA
66 TTTCTCTTCTTCTTTTTCAAAACAATGTCTAA
16013065 GTACATAATC
Statistics
Matches: 91, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
99 57 0.63
100 34 0.37
ACGTcount: A:0.30, C:0.12, G:0.09, T:0.48
Consensus pattern (100 bp):
TACTTTATGAAAATTGAAAAGTTAATACCTATATTGTTTTTTTTTACTAAATGCTCAAGTTGTTA
TTTCTCTTCTTCTTTTTCAAAACAATGTCTAACTA
Found at i:16022247 original size:33 final size:33
Alignment explanation
Indices: 16022205--16022271 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
16022195 ACAACAAGGT
16022205 AAGTTTGATCATATGAATATGTGATACTATTTC
1 AAGTTTGATCATATGAATATGTGATACTATTTC
16022238 AAGTTTGATCATATGAATATGTGATACTATTTC
1 AAGTTTGATCATATGAATATGTGATACTATTTC
16022271 A
1 A
16022272 TACATATTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.42
Consensus pattern (33 bp):
AAGTTTGATCATATGAATATGTGATACTATTTC
Found at i:16023320 original size:28 final size:27
Alignment explanation
Indices: 16023264--16023322 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 27
16023254 ATAAAAAAAT
* *
16023264 TAAAATAAATAATCAAGATATATAGAA
1 TAAAATAAAAAATCAAGATATATACAA
*
16023291 TAAAATAATAAAATCAAAGAT-TGTACAA
1 TAAAATAA-AAAATC-AAGATATATACAA
16023319 TAAA
1 TAAA
16023323 GAAGATAGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 8 0.30
28 14 0.52
29 5 0.19
ACGTcount: A:0.63, C:0.05, G:0.07, T:0.25
Consensus pattern (27 bp):
TAAAATAAAAAATCAAGATATATACAA
Found at i:16024433 original size:31 final size:31
Alignment explanation
Indices: 16024398--16024459 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
16024388 CTGAAGTGTT
* *
16024398 TGAATGGAATTCGAACTGAGTAGTTAGGGGA
1 TGAATAGAATTCGAACTGAGTAGTTAAGGGA
*
16024429 TGAATAGAATTTGAACTGAGTAGTTAAGGGA
1 TGAATAGAATTCGAACTGAGTAGTTAAGGGA
16024460 GGTATGATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.35, C:0.05, G:0.32, T:0.27
Consensus pattern (31 bp):
TGAATAGAATTCGAACTGAGTAGTTAAGGGA
Found at i:16025775 original size:17 final size:18
Alignment explanation
Indices: 16025753--16025786 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
16025743 TTTTAGGCTT
16025753 TGTGGG-CTACACGGGCG
1 TGTGGGCCTACACGGGCG
*
16025770 TGTGGGCCTACATGGGC
1 TGTGGGCCTACACGGGC
16025787 CACGTTGTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.12, C:0.24, G:0.44, T:0.21
Consensus pattern (18 bp):
TGTGGGCCTACACGGGCG
Found at i:16025991 original size:26 final size:27
Alignment explanation
Indices: 16025902--16026058 Score: 167
Period size: 27 Copynumber: 5.9 Consensus size: 27
16025892 CCCAATATGA
*
16025902 TAAAATGATTGTTTTG-CATT-TGTGG
1 TAAAATGATTGTTTTGCCCTTATGTGG
* * *
16025927 TAAAATGACTGTTTTACCCTTATTTGG
1 TAAAATGATTGTTTTGCCCTTATGTGG
16025954 TAAAATGATTGTTTTGCCCTT-TGTGG
1 TAAAATGATTGTTTTGCCCTTATGTGG
* *
16025980 TAAAATGTTTGTTTTGCCCTTATGAGG
1 TAAAATGATTGTTTTGCCCTTATGTGG
* * * * *
16026007 TAAAATGACTATTTTTCCCTTATATGC
1 TAAAATGATTGTTTTGCCCTTATGTGG
* * *
16026034 TAAGATGATTGTTTGGCCCCTATGT
1 TAAAATGATTGTTTTGCCCTTATGT
16026059 AAGGTATATT
Statistics
Matches: 106, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
25 14 0.13
26 27 0.25
27 65 0.61
ACGTcount: A:0.24, C:0.13, G:0.19, T:0.45
Consensus pattern (27 bp):
TAAAATGATTGTTTTGCCCTTATGTGG
Found at i:16025993 original size:53 final size:52
Alignment explanation
Indices: 16025902--16026014 Score: 163
Period size: 53 Copynumber: 2.2 Consensus size: 52
16025892 CCCAATATGA
**
16025902 TAAAATGATTGTTTTGCATTTGTGGTAAAATGACTGTTTTACCCTTATTTGG
1 TAAAATGATTGTTTTGCATTTGTGGTAAAATGACTGTTTTACCCTTATGAGG
* ** *
16025954 TAAAATGATTGTTTTGCCCTTTGTGGTAAAATGTTTGTTTTGCCCTTATGAGG
1 TAAAATGATTGTTTTG-CATTTGTGGTAAAATGACTGTTTTACCCTTATGAGG
16026007 TAAAATGA
1 TAAAATGA
16026015 CTATTTTTCC
Statistics
Matches: 54, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
52 16 0.30
53 38 0.70
ACGTcount: A:0.26, C:0.10, G:0.20, T:0.44
Consensus pattern (52 bp):
TAAAATGATTGTTTTGCATTTGTGGTAAAATGACTGTTTTACCCTTATGAGG
Found at i:16026027 original size:53 final size:53
Alignment explanation
Indices: 16025902--16026027 Score: 146
Period size: 53 Copynumber: 2.4 Consensus size: 53
16025892 CCCAATATGA
* * * **
16025902 TAAAATGATTGTTTTG-CATTTGTGGTAAAATGACTGTTTTACCCTTATTTGG
1 TAAAATGACTATTTTGCCCTTTGTGGTAAAATGACTGTTTTACCCTTATGAGG
* * ** *
16025954 TAAAATGATTGTTTTGCCCTTTGTGGTAAAATGTTTGTTTTGCCCTTATGAGG
1 TAAAATGACTATTTTGCCCTTTGTGGTAAAATGACTGTTTTACCCTTATGAGG
*
16026007 TAAAATGACTATTTTTCCCTT
1 TAAAATGACTATTTTGCCCTT
16026028 ATATGCTAAG
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
52 16 0.25
53 48 0.75
ACGTcount: A:0.24, C:0.12, G:0.18, T:0.46
Consensus pattern (53 bp):
TAAAATGACTATTTTGCCCTTTGTGGTAAAATGACTGTTTTACCCTTATGAGG
Found at i:16026027 original size:80 final size:78
Alignment explanation
Indices: 16025902--16026052 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 78
16025892 CCCAATATGA
* * * *
16025902 TAAAATGATTGTTTTGCATTTGTGGTAAAATGACTGTTTTACCCTTATTTGGTAAAATGATTGTT
1 TAAAATGATTGTTTTGCATTTGAGGTAAAATGACTATTTTACCCTTATATGCTAAAATGATTGTT
*
16025967 TTGCCCTTTGTGG
66 TGGCCCTTTGTGG
* * * *
16025980 TAAAATGTTTGTTTTGCCCTTATGAGGTAAAATGACTATTTTTCCCTTATATGCTAAGATGATTG
1 TAAAATGATTGTTTTG-CATT-TGAGGTAAAATGACTATTTTACCCTTATATGCTAAAATGATTG
16026045 TTTGGCCC
64 TTTGGCCC
16026053 CTATGTAAGG
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
78 15 0.24
79 3 0.05
80 44 0.71
ACGTcount: A:0.24, C:0.13, G:0.19, T:0.44
Consensus pattern (78 bp):
TAAAATGATTGTTTTGCATTTGAGGTAAAATGACTATTTTACCCTTATATGCTAAAATGATTGTT
TGGCCCTTTGTGG
Found at i:16032937 original size:40 final size:40
Alignment explanation
Indices: 16032854--16033073 Score: 250
Period size: 40 Copynumber: 5.5 Consensus size: 40
16032844 ACCCAAGTAT
** * *
16032854 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
16032892 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
16032932 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
16032972 CTTTGGGTCTTAGCCCGGATATAG-CAACTCGAACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * *
16033012 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
16033052 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
16033074 CATTCGAATA
Statistics
Matches: 152, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 16 0.11
40 123 0.81
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:16036960 original size:40 final size:40
Alignment explanation
Indices: 16036923--16037147 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
16036913 GCTACTCGTT
* *
16036923 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
16036963 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
16037003 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
16037043 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
16037082 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
16037123 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
16037148 CATCATTCAA
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.19
40 118 0.72
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:16037107 original size:119 final size:120
Alignment explanation
Indices: 16036925--16037147 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
16036915 TACTCGTTCA
*
16036925 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
16036990 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
16037045 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
16037107 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
16037148 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:16045222 original size:40 final size:40
Alignment explanation
Indices: 16045185--16045354 Score: 186
Period size: 39 Copynumber: 4.3 Consensus size: 40
16045175 GCTACTCGTT
* *
16045185 CAAATGCCTTCGGGACATAGCATGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACACGGATT-TAGTAACTCGCA
* *
16045225 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACACGGATTTAGTAACTCGCA
* *
16045265 CAAATGCCTTCGGG-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACACGGATTTAGTAACTCGCA
* * * * * * *
16045304 CCAATGCCTTCGGG-CTTAGCCCAGA-ATAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACACGGATTTAGTAACTCGCA
16045342 CAAATGCCTTCGG
1 CAAATGCCTTCGG
16045355 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
38 23 0.19
39 47 0.39
40 47 0.39
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACACGGATTTAGTAACTCGCA
Found at i:16045294 original size:39 final size:39
Alignment explanation
Indices: 16045213--16045354 Score: 223
Period size: 39 Copynumber: 3.6 Consensus size: 39
16045203 AGCATGGTTA
16045213 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGG-CTTAACCCGGATT
16045253 TAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGGATT
* * * *
16045292 TAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCAGA-A
1 TAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGGATT
*
16045330 TAGTATCTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGG
16045355 ATCTTAGTCC
Statistics
Matches: 96, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
38 23 0.24
39 47 0.49
40 26 0.27
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (39 bp):
TAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGGATT
Found at i:16056638 original size:48 final size:48
Alignment explanation
Indices: 16056564--16056749 Score: 180
Period size: 48 Copynumber: 3.9 Consensus size: 48
16056554 ATTGGGTTGA
* * * *
16056564 TGAGATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATCAATG
1 TGAGATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCAATG
* * * ** *
16056612 TGAGATCCCATGTAAGACCATGTCTGGCACATGGCTTTGGCATCGTTA
1 TGAGATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCAATG
* * *
16056660 AGTGATCCCATGTAAGACCATGT-TAGGGACATGGCATTGGCATCGATATG
1 TGAGATCCCATGTAAGACCATATCT-GGGACATGGCATTGGCATC-A-ATG
* * *
16056710 TG-G-TCCCTTGTAAGACCATATCCGGGATATGGCATTGGCA
1 TGAGATCCCATGTAAGACCATATCTGGGACATGGCATTGGCA
16056750 CCCTACCATG
Statistics
Matches: 112, Mismatches: 22, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
47 1 0.01
48 108 0.96
49 1 0.01
50 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (48 bp):
TGAGATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCAATG
Found at i:16056742 original size:96 final size:96
Alignment explanation
Indices: 16056567--16056749 Score: 219
Period size: 96 Copynumber: 1.9 Consensus size: 96
16056557 GGGTTGATGA
* *
16056567 GATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATCAATGTGAGATCCCATGTAAGACCA
1 GATCCCATATAAGACCATATCTGGGACATGGCATCGGCATCAATGTGAGATCCCATGTAAGACCA
* * *
16056632 TGTCTGGCACATGGCTTTGGCATCGTTAAGT
66 TATCCGGCACATGGCATTGGCATCGTTAAGT
* * * *
16056663 GATCCCATGTAAGACCATGT-TAGGGACATGGCATTGGCATCGATATGTG-G-TCCCTTGTAAGA
1 GATCCCATATAAGACCATATCT-GGGACATGGCATCGGCATC-A-ATGTGAGATCCCATGTAAGA
* *
16056725 CCATATCCGGGATATGGCATTGGCA
63 CCATATCCGGCACATGGCATTGGCA
16056750 CCCTACCATG
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
95 1 0.01
96 65 0.89
97 2 0.03
98 5 0.07
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (96 bp):
GATCCCATATAAGACCATATCTGGGACATGGCATCGGCATCAATGTGAGATCCCATGTAAGACCA
TATCCGGCACATGGCATTGGCATCGTTAAGT
Found at i:16057925 original size:19 final size:20
Alignment explanation
Indices: 16057901--16057946 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
16057891 CGGGCTAGGG
16057901 ACACGGG-GTGTCCCAAGCC
1 ACACGGGTGTGTCCCAAGCC
*
16057920 ACACGGGTGTGTCCCAAGCT
1 ACACGGGTGTGTCCCAAGCC
16057940 ACACGGG
1 ACACGGG
16057947 CGTCTGTGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 7 0.28
20 18 0.72
ACGTcount: A:0.22, C:0.33, G:0.33, T:0.13
Consensus pattern (20 bp):
ACACGGGTGTGTCCCAAGCC
Found at i:16073856 original size:19 final size:20
Alignment explanation
Indices: 16073813--16073858 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
16073803 GTGTCATGCT
16073813 CGTGTGAGGGTGCTCAGGCC
1 CGTGTGAGGGTGCTCAGGCC
16073833 CGTGTGAGGGTGCTCAGG-C
1 CGTGTGAGGGTGCTCAGGCC
16073852 CGTGTGA
1 CGTGTGA
16073859 ACTTCTGAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 8 0.31
20 18 0.69
ACGTcount: A:0.11, C:0.22, G:0.46, T:0.22
Consensus pattern (20 bp):
CGTGTGAGGGTGCTCAGGCC
Found at i:16084020 original size:48 final size:47
Alignment explanation
Indices: 16083958--16084100 Score: 146
Period size: 48 Copynumber: 3.0 Consensus size: 47
16083948 TGGGTTGATG
* * * *
16083958 AGATCCCTTTTAAGACCATCTCTGAGATATGGCATTGGCATCAATATA
1 AGATCCCATGTAAGACCATCTCTGGGACATGGCATTGGCATC-ATATA
* * * *
16084006 AGATCCCATGTAAGACCA-CGTTTGGGACACGACTTTGGCATCAT-TA
1 AGATCCCATGTAAGACCATC-TCTGGGACATGGCATTGGCATCATATA
*
16084052 ATTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATAT
1 A--GATCCCATGTAAGACCATCTCTGGGACATGGCATTGGCATC-ATAT
16084101 GAGACATCGT
Statistics
Matches: 76, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
46 3 0.04
47 3 0.04
48 67 0.88
49 2 0.03
50 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (47 bp):
AGATCCCATGTAAGACCATCTCTGGGACATGGCATTGGCATCATATA
Found at i:16084127 original size:96 final size:93
Alignment explanation
Indices: 16083959--16084210 Score: 228
Period size: 96 Copynumber: 2.7 Consensus size: 93
16083949 GGGTTGATGA
* * * * * * *
16083959 GATCCCTTTTAAGACCATCTCTGAGATATGGCATTGGCATCAATATAAGATCCCATGTAAGACCA
1 GATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAGATCCCATGTAAGACCA
* * * *
16084024 CGTTTGGG--A-CACGACTTTGGCATCATTAATT
66 AGTTTGGGCTATCA-G-CTTCGG--T--GTAAGT
* * *
16084055 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAGA-CATCGTGTAAGACC
1 GATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAGATC-CCATGTAAGACC
16084119 ATAG-TTGGGCTATCAGCTTCGGTGTAAGT
65 A-AGTTTGGGCTATCAGCTTCGGTGTAAGT
* * *
16084148 GATCCCATATAAGACCATGT-TAGGGACATGGCATTGGCATCGATATGTGGTCCCTTGTAAGAC
1 GATCCCATATAAGACCATGTCT-GGGACATGGCATTGGCATCGATATGAGATCCCATGTAAGAC
16084211 TATATTCAGG
Statistics
Matches: 131, Mismatches: 18, Indels: 17
0.79 0.11 0.10
Matches are distributed among these distances:
92 1 0.01
93 58 0.44
94 1 0.01
95 2 0.02
96 59 0.45
97 6 0.05
98 2 0.02
99 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (93 bp):
GATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAGATCCCATGTAAGACCA
AGTTTGGGCTATCAGCTTCGGTGTAAGT
Found at i:16085007 original size:25 final size:25
Alignment explanation
Indices: 16084973--16085048 Score: 152
Period size: 25 Copynumber: 3.0 Consensus size: 25
16084963 TAATGTTGAT
16084973 TGAACATGAAATTGATATGGAAAGC
1 TGAACATGAAATTGATATGGAAAGC
16084998 TGAACATGAAATTGATATGGAAAGC
1 TGAACATGAAATTGATATGGAAAGC
16085023 TGAACATGAAATTGATATGGAAAGC
1 TGAACATGAAATTGATATGGAAAGC
16085048 T
1 T
16085049 TTATTGAGTA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 51 1.00
ACGTcount: A:0.43, C:0.08, G:0.24, T:0.25
Consensus pattern (25 bp):
TGAACATGAAATTGATATGGAAAGC
Found at i:16098353 original size:8 final size:9
Alignment explanation
Indices: 16098321--16098362 Score: 52
Period size: 9 Copynumber: 4.9 Consensus size: 9
16098311 ATATGGATTA
16098321 AATTGAATG
1 AATTGAATG
*
16098330 AAATGAATG
1 AATTGAATG
16098339 AATTGAATG
1 AATTGAATG
*
16098348 -ATTGAACG
1 AATTGAATG
16098356 -ATTGAAT
1 AATTGAAT
16098363 TTGTATTGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
8 13 0.45
9 16 0.55
ACGTcount: A:0.45, C:0.02, G:0.21, T:0.31
Consensus pattern (9 bp):
AATTGAATG
Found at i:16102365 original size:36 final size:34
Alignment explanation
Indices: 16102301--16102372 Score: 90
Period size: 36 Copynumber: 2.1 Consensus size: 34
16102291 AAATAAGTAG
* *
16102301 TATTTATTTTTTATTTATTCTTAAATTTTAATTTT
1 TATTTATTTATTATATATTCTTAAATTTT-ATTTT
**
16102336 TATTTATTCTATTATATATTCTTTTATTTTATTTT
1 TATTTATT-TATTATATATTCTTAAATTTTATTTT
16102371 TA
1 TA
16102373 GACATCACTG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
35 15 0.47
36 17 0.53
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (34 bp):
TATTTATTTATTATATATTCTTAAATTTTATTTT
Found at i:16105559 original size:17 final size:17
Alignment explanation
Indices: 16105537--16105573 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
16105527 CGCTCTAGAG
16105537 TTAGATATGAGCAAAGC
1 TTAGATATGAGCAAAGC
16105554 TTAGATATGAGCAAAGC
1 TTAGATATGAGCAAAGC
16105571 TTA
1 TTA
16105574 TGATCGAGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.41, C:0.11, G:0.22, T:0.27
Consensus pattern (17 bp):
TTAGATATGAGCAAAGC
Found at i:16107813 original size:16 final size:16
Alignment explanation
Indices: 16107792--16107826 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
16107782 ATATATCATG
16107792 TGTGACTTGTATGGAT
1 TGTGACTTGTATGGAT
16107808 TGTGACTTGTATGGAT
1 TGTGACTTGTATGGAT
16107824 TGT
1 TGT
16107827 AACACCCCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.17, C:0.06, G:0.31, T:0.46
Consensus pattern (16 bp):
TGTGACTTGTATGGAT
Found at i:16118046 original size:47 final size:46
Alignment explanation
Indices: 16117934--16118106 Score: 152
Period size: 46 Copynumber: 3.7 Consensus size: 46
16117924 TCACTTGCGT
* * **
16117934 GAGCTAGTGTAAGACATGTCTGGGACATGTATCGGCCACATTACGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAAACGA
* * *
16117980 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CATTAAAATGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCA-CAAAACGA
* * * * * *
16118028 GTGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGAC-A
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAAACGA
* * *
16118073 TAAGCCAGTGTAAGACATGTCTGGGACATCCATC
1 -GAGCTAGTGTAAGACATGTCTGGGACATGCATC
16118107 GGCTAAGAGA
Statistics
Matches: 101, Mismatches: 21, Indels: 10
0.77 0.16 0.08
Matches are distributed among these distances:
45 1 0.01
46 49 0.49
47 30 0.30
48 21 0.21
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAAACGA
Found at i:16132148 original size:48 final size:47
Alignment explanation
Indices: 16132069--16132447 Score: 359
Period size: 48 Copynumber: 7.9 Consensus size: 47
16132059 TATTTGGGTG
* * * *
16132069 ATATGTGTGCTAGTGTAAGACTATGTTTGGGACATGGCATCGGCCAC
1 ATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
* * * *
16132116 ATTATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCGTTGGCCAC
1 A-TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
* * * * *
16132164 ATTATGAGAGCCAGTGTAAGACCATGTCTTGGACATGGAATC-GACATTG
1 A-TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA--C
* * ** *
16132213 AGATGAGAGATAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTTGAC
1 ATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCC---AC
* * *
16132263 ATA--TGAGCCAATGTAAGACCATGTTTGGGACATGGCATCGGCCTC
1 ATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
* * * *
16132308 GACATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTC
1 -ATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
* * * * *
16132356 GACATGTAAGCCAATGTAAGACCATGTTTGGGACATGGCATCGGCCTC
1 -ATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
* *
16132404 GATATGTGAGCCAGTGTAAAACCATGTCTAGGACATGGCATCGG
1 -ATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
16132448 TAATTTACCC
Statistics
Matches: 281, Mismatches: 41, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
45 1 0.00
46 2 0.01
47 4 0.01
48 268 0.95
49 3 0.01
50 2 0.01
52 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (47 bp):
ATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
Found at i:16132342 original size:144 final size:143
Alignment explanation
Indices: 16132079--16132447 Score: 406
Period size: 144 Copynumber: 2.6 Consensus size: 143
16132069 ATATGTGTGC
* * *
16132079 TAGTGTAAGACTATGTTTGGGACATGGCATCGGCC--ACATTATGTGTGCTAGTGTAAGACCATG
1 TAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTGACA-TA--TGAGCCAGTGTAAGACCATG
* * *
16132142 TCTGGGACATGGCGTTGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTTGGACATGGAATCG
63 TCTGGGACATGGCATCGGCCACATCATGAGAGCCAGTGTAAGACCATGTCTTGGACATGGAATCG
* *
16132207 ACATTGAGATG-AGAGA
128 ACATCGACATGTA-AGA
* * * *
16132223 TAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTTGACATATGAGCCAATGTAAGACCATGTT
1 TAGTGTAAGACCATGTTTGGGACATGGCATCGGCC-TGACATATGAGCCAGTGTAAGACCATGTC
* * * *
16132288 TGGGACATGGCATCGGCCTCGA-CATGTGAGCTAGTGTAAGACCATGT-TTGGGACATGGCATCG
65 TGGGACATGGCATCGGCCAC-ATCATGAGAGCCAGTGTAAGACCATGTCTT-GGACATGGAATCG
* * *
16132351 GCCTCGACATGTAAGC
128 ACATCGACATGTAAGA
* * * * *
16132367 CAATGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAAAACCATGTC
1 TAGTGTAAGACCATGTTTGGGACATGGCATCGGCCT-GACATATGAGCCAGTGTAAGACCATGTC
*
16132432 TAGGACATGGCATCGG
65 TGGGACATGGCATCGG
16132448 TAATTTACCC
Statistics
Matches: 189, Mismatches: 29, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
143 3 0.02
144 179 0.95
145 2 0.01
146 2 0.01
147 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.25
Consensus pattern (143 bp):
TAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTGACATATGAGCCAGTGTAAGACCATGTCT
GGGACATGGCATCGGCCACATCATGAGAGCCAGTGTAAGACCATGTCTTGGACATGGAATCGACA
TCGACATGTAAGA
Found at i:16132445 original size:96 final size:96
Alignment explanation
Indices: 16132082--16132447 Score: 452
Period size: 96 Copynumber: 3.8 Consensus size: 96
16132072 TGTGTGCTAG
* * *
16132082 TGTAAGACTATGTTTGGGACATGGCATCGGCCAC-ATTATGTGTGCTAGTGTAAGACCATGTCTG
1 TGTAAGACCATGTTTGGGACATGGCATCGGCCTCGA-TATGTGAGCTAGTGTAAGACCATGTCTG
* * * * *
16132146 GGACATGGCGTTGGCCAC-ATTATG-AGAGCCAG
65 GGACATGGCATCGGCCTCGA-CATGTA-AGCCAA
* * * * * * *
16132178 TGTAAGACCATGTCTT-GGACATGGAATCGACATTGAGATGAGAGATAGTGTAAGACCATGTCTG
1 TGTAAGACCATGT-TTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGTAAGACCATGTCTG
* * * *
16132242 GGACATGGCATTGGCCTTGACATATGAGCCAA
65 GGACATGGCATCGGCCTCGACATGTAAGCCAA
* *
16132274 TGTAAGACCATGTTTGGGACATGGCATCGGCCTCGACATGTGAGCTAGTGTAAGACCATGTTTGG
1 TGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGTAAGACCATGTCTGG
16132339 GACATGGCATCGGCCTCGACATGTAAGCCAA
66 GACATGGCATCGGCCTCGACATGTAAGCCAA
* * *
16132370 TGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAAAACCATGTCTAG
1 TGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGTAAGACCATGTCTGG
16132435 GACATGGCATCGG
66 GACATGGCATCGG
16132448 TAATTTACCC
Statistics
Matches: 231, Mismatches: 34, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
95 2 0.01
96 225 0.97
97 4 0.02
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.25
Consensus pattern (96 bp):
TGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGTAAGACCATGTCTGG
GACATGGCATCGGCCTCGACATGTAAGCCAA
Found at i:16139758 original size:15 final size:12
Alignment explanation
Indices: 16139720--16139761 Score: 57
Period size: 12 Copynumber: 3.2 Consensus size: 12
16139710 GTTAATTTAA
16139720 TTTAAAATTATT
1 TTTAAAATTATT
16139732 TTTAAAATTATT
1 TTTAAAATTATT
16139744 TTTATAGATATTATT
1 TTTA-A-A-ATTATT
16139759 TTT
1 TTT
16139762 GTTAAGATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 16 0.59
13 1 0.04
14 1 0.04
15 9 0.33
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (12 bp):
TTTAAAATTATT
Found at i:16147522 original size:20 final size:20
Alignment explanation
Indices: 16147485--16147522 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
16147475 TAAGGAATTG
*
16147485 ATTAAATTAGTCATTTTACT
1 ATTAAATTAGTCAATTTACT
16147505 ATTAAA-TAGATCAATTTA
1 ATTAAATTAG-TCAATTTA
16147523 GTTTAAGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.45
Consensus pattern (20 bp):
ATTAAATTAGTCAATTTACT
Found at i:16147609 original size:70 final size:69
Alignment explanation
Indices: 16147524--16147687 Score: 229
Period size: 70 Copynumber: 2.4 Consensus size: 69
16147514 ATCAATTTAG
*
16147524 TTTAAGTATTATTAAAAAGAATTAAATAAGTTCAAACGGGAATAAAGTTAAACATTTATTATTTA
1 TTTATGTATTATTAAAAAGAATTAAATAAGTTCAAACGGGAATAAAGTT-AACATTTATTATTTA
16147589 AAAAA
65 AAAAA
* * * *
16147594 TTTATGTATTATTAAAAAGAATTAAATAAGTTTAAACTGTAATAGAGTTAACATTTATTATTTAA
1 TTTATGTATTATTAAAAAGAATTAAATAAGTTCAAACGGGAATAAAGTTAACATTTATTATTTAA
16147659 AAAA
66 AAAA
* * * * *
16147663 ATTATTTATTGTTTAATAGAATTAA
1 TTTATGTATTATTAAAAAGAATTAA
16147688 TATTTTTAAA
Statistics
Matches: 84, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
69 40 0.48
70 44 0.52
ACGTcount: A:0.48, C:0.03, G:0.09, T:0.40
Consensus pattern (69 bp):
TTTATGTATTATTAAAAAGAATTAAATAAGTTCAAACGGGAATAAAGTTAACATTTATTATTTAA
AAAA
Found at i:16147685 original size:69 final size:70
Alignment explanation
Indices: 16147529--16147687 Score: 230
Period size: 69 Copynumber: 2.3 Consensus size: 70
16147519 TTTAGTTTAA
16147529 GTATTATTAAAAAGAATTAAATAAGTTCAAACGGGAATAAAGTTAAACATTTATTATTTAAAAAA
1 GTATTATTAAAAAGAATTAAATAAGTTCAAACGGGAATAAAGTTAAACATTTATTATTTAAAAAA
*
16147594 TTTAT
66 ATTAT
* * * *
16147599 GTATTATTAAAAAGAATTAAATAAGTTTAAACTGTAATAGAGTT-AACATTTATTATTTAAAAAA
1 GTATTATTAAAAAGAATTAAATAAGTTCAAACGGGAATAAAGTTAAACATTTATTATTTAAAAAA
16147663 ATTAT
66 ATTAT
* * * *
16147668 TTATTGTTTAATAGAATTAA
1 GTATTATTAAAAAGAATTAA
16147688 TATTTTTAAA
Statistics
Matches: 80, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
69 40 0.50
70 40 0.50
ACGTcount: A:0.48, C:0.03, G:0.09, T:0.39
Consensus pattern (70 bp):
GTATTATTAAAAAGAATTAAATAAGTTCAAACGGGAATAAAGTTAAACATTTATTATTTAAAAAA
ATTAT
Found at i:16149312 original size:30 final size:31
Alignment explanation
Indices: 16149276--16149336 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
16149266 TATTTTATTA
16149276 TTAATTTTGTT-ATTATTTTAAAGACATTTG
1 TTAATTTTGTTAATTATTTTAAAGACATTTG
* * *
16149306 TTAATTTTTTTAATTATTTTAGAGGCATTTG
1 TTAATTTTGTTAATTATTTTAAAGACATTTG
16149337 CTTGTTAAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 10 0.37
31 17 0.63
ACGTcount: A:0.28, C:0.03, G:0.11, T:0.57
Consensus pattern (31 bp):
TTAATTTTGTTAATTATTTTAAAGACATTTG
Found at i:16151944 original size:27 final size:27
Alignment explanation
Indices: 16151869--16151960 Score: 85
Period size: 27 Copynumber: 3.4 Consensus size: 27
16151859 ATATTCTCCA
*** * *
16151869 TATTTAATGTCCCGGTGGACTATCCTG
1 TATTTAATGTCCCGAAAGACTACCCCG
* *
16151896 TATTTAATGTCTCGAAAAACTACCCCG
1 TATTTAATGTCCCGAAAGACTACCCCG
* * *
16151923 TGTTTAATGTCCCGACAGACTACCACG
1 TATTTAATGTCCCGAAAGACTACCCCG
*
16151950 TATTTATTGTC
1 TATTTAATGTC
16151961 TTAACAGACT
Statistics
Matches: 51, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (27 bp):
TATTTAATGTCCCGAAAGACTACCCCG
Found at i:16157214 original size:37 final size:37
Alignment explanation
Indices: 16157155--16157263 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
16157145 AGCTCAGACG
* *
16157155 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
16157192 AAATCTCCACATGTAGTCATCGGGTTTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
16157229 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
16157264 ATATATTTCC
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:16157549 original size:47 final size:48
Alignment explanation
Indices: 16157409--16157592 Score: 300
Period size: 47 Copynumber: 3.8 Consensus size: 48
16157399 GCACATCGCC
*
16157409 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
16157459 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
16157507 TACATATTTCACATTAGCCATTC-GCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
16157554 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
16157593 TGCATGTTCA
Statistics
Matches: 126, Mismatches: 5, Indels: 8
0.91 0.04 0.06
Matches are distributed among these distances:
47 46 0.37
48 36 0.29
49 2 0.02
50 42 0.33
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:16157614 original size:47 final size:47
Alignment explanation
Indices: 16157417--16157663 Score: 190
Period size: 47 Copynumber: 5.2 Consensus size: 47
16157407 CCTACATATT
* * *
16157417 TCACACTAGCCATTCGGCTTTACCACATATA--CATATCTCATATATATA
1 TCACATTAGCCATTCGGCTTTACCACATATATGCATGT-TCATAT-T-CA
* *
16157465 TTTCACATT-GACCATTCGGCTTTACCAC--ATATGCATATCTCATACATAT-T
1 --TCACATTAG-CCATTCGGCTTTACCACATATATGCATGT-TCAT--AT-TCA
* *
16157515 TCACATTAGCCATTC-GCTTTACCACATATA--CATATCTCATACATAT-T
1 TCACATTAGCCATTCGGCTTTACCACATATATGCATGT-TCAT--AT-TCA
16157562 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
* * * * *
16157609 CCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
16157656 TCACATTA
1 TCACATTA
16157664 AATCCTAAAT
Statistics
Matches: 174, Mismatches: 11, Indels: 27
0.82 0.05 0.13
Matches are distributed among these distances:
46 1 0.01
47 92 0.53
48 31 0.18
49 9 0.05
50 37 0.21
52 4 0.02
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.35
Consensus pattern (47 bp):
TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
Found at i:16157636 original size:95 final size:96
Alignment explanation
Indices: 16157418--16157639 Score: 276
Period size: 95 Copynumber: 2.3 Consensus size: 96
16157408 CTACATATTT
* *
16157418 CACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTGACCATTCG
1 CACATTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCACATTGACCATTCG
**
16157483 GCTTTACCACATATGCATATCTCATACATATTT
65 GCTTTACCACATATGCATATCTCATA-ATATAC
16157516 CACATTAGCCATTC-GCTTTACCACATATACATATCTC-ATACATATTTCACATT-AGCCATTCG
1 CACATTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTGA-CCATTCG
*
16157578 GCTTTACCACATATATGCATGT-TCAT-AT-TCAC
65 GCTTTACCAC--ATATGCATATCTCATAATAT-AC
* * *
16157610 CACATTGGCCATTCGGCCTTATCACATATA
1 CACATTAGCCATTCGGCTTTACCACATATA
16157640 TGCATGTTCA
Statistics
Matches: 111, Mismatches: 8, Indels: 13
0.84 0.06 0.10
Matches are distributed among these distances:
93 1 0.01
94 16 0.14
95 45 0.41
96 4 0.04
97 32 0.29
98 13 0.12
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.35
Consensus pattern (96 bp):
CACATTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTGACCATTCGG
CTTTACCACATATGCATATCTCATAATATAC
Found at i:16161659 original size:40 final size:40
Alignment explanation
Indices: 16161627--16161976 Score: 551
Period size: 40 Copynumber: 8.8 Consensus size: 40
16161617 CCAGCATGAT
* * * * *
16161627 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGTACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
16161667 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
16161707 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
16161747 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
16161787 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
16161827 TTCTCTTCGGGACTTAGTCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
16161867 TGCTCTTCGGGAC--AGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
16161905 TGCTCTTCGGGACTTAGCCCGGGTACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
16161945 TGCTCTTCGAGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
16161977 CTCAATTCTC
Statistics
Matches: 287, Mismatches: 21, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
38 35 0.12
40 252 0.88
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:16163289 original size:37 final size:37
Alignment explanation
Indices: 16163231--16163301 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
16163221 GCTCAGACGA
*
16163231 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAT
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAT
*
16163268 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGA
16163302 ATATATTTCC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAT
Found at i:16163571 original size:48 final size:48
Alignment explanation
Indices: 16163447--16163631 Score: 309
Period size: 48 Copynumber: 3.8 Consensus size: 48
16163437 GCACATCGCC
*
16163447 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
16163497 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
16163545 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
16163593 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
16163632 TGCATGTTCA
Statistics
Matches: 128, Mismatches: 5, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
48 84 0.66
49 2 0.02
50 42 0.33
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:16163636 original size:98 final size:97
Alignment explanation
Indices: 16163447--16163630 Score: 318
Period size: 98 Copynumber: 1.9 Consensus size: 97
16163437 GCACATCGCC
*
16163447 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCACATT
16163512 GACCATTCGGCTTTACCACATATGCATATCTCA
65 GACCATTCGGCTTTACCACATATGCATATCTCA
*
16163545 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-ATACATATTTCACATT-
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
16163608 AGCCATTCGGCTTTACCACATAT
66 A-CCATTCGGCTTTACCACATAT
16163631 ATGCATGTTC
Statistics
Matches: 83, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
95 1 0.01
96 36 0.43
98 46 0.55
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
ACCATTCGGCTTTACCACATATGCATATCTCA
Found at i:16163680 original size:47 final size:47
Alignment explanation
Indices: 16163601--16163747 Score: 231
Period size: 47 Copynumber: 3.1 Consensus size: 47
16163591 CATACATATT
* * * *
16163601 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
16163648 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
16163695 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
16163742 TCACAT
1 TCACAT
16163748 AAATCCTAAA
Statistics
Matches: 90, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 90 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:16169088 original size:46 final size:47
Alignment explanation
Indices: 16169004--16169174 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 47
16168994 TATAAGAGCC
** * *
16169004 AGTGTAAGATTATGTCTAGGACATGGCATCGGCATCGAGACGAGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACGA-TGCT
* *
16169052 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACG-ATGCT
* *
16169098 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CTACGAAATGATAG-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGACGAT-GCT
16169143 CAGTGTAAGACCATGTCTGGGACATGGCATCG
1 -AGTGTAAGACCATGTCTGGGACATGGCATCG
16169175 ACTTGGGATA
Statistics
Matches: 108, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
45 3 0.03
46 63 0.58
47 27 0.25
48 15 0.14
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACGATGCT
Found at i:16169196 original size:47 final size:45
Alignment explanation
Indices: 16168963--16169207 Score: 147
Period size: 47 Copynumber: 5.2 Consensus size: 45
16168953 TGGGCTAGTA
* *** *
16168963 AAGACATATCTGGGACATGCATCGACCACATTATAA-GAGCCAGTGT
1 AAGACATGTCTGGGACATGCATCGACTTGA-GA-AATGAGCCAGTGT
* * * * * * *
16169009 AAGATTATGTCTAGGACATGGCATCGGCATCGAGACGA-GTGCTAGTGT
1 AAGA-CATGTCTGGGACAT-GCATCGAC-TTGAGA-AATGAGCCAGTGT
* * ** *
16169057 AAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAAGCCAGTGT
1 AAGACATGTCTGGGACATGCATC-GACTTGAGAAATGAGCCAGTGT
* *
16169103 AAGACATGTCTGGGACATGCATCGGC-T-ACGAAATGATAGTCAGTGT
1 AAGACATGTCTGGGACATGCATCGACTTGA-GAAATG--AGCCAGTGT
* * *
16169149 AAGACCATGTCTGGGACATGGCATCGACTTGGGATATGAGCCTGTGT
1 AAGA-CATGTCTGGGACAT-GCATCGACTTGAGAAATGAGCCAGTGT
16169196 AAGACCATGTCT
1 AAGA-CATGTCT
16169208 AGGATATTGC
Statistics
Matches: 156, Mismatches: 31, Indels: 23
0.74 0.15 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
45 2 0.01
46 57 0.37
47 58 0.37
48 28 0.18
49 7 0.04
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (45 bp):
AAGACATGTCTGGGACATGCATCGACTTGAGAAATGAGCCAGTGT
Found at i:16178071 original size:39 final size:40
Alignment explanation
Indices: 16178026--16178193 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
16178016 CGGGGTTTAG
* * *
16178026 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
16178065 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
16178105 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
16178145 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
16178186 CCGGATAT
1 CCGGATAT
16178194 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:16178176 original size:41 final size:40
Alignment explanation
Indices: 16178049--16178193 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
16178039 CTCGCACAAG
* * * * *
16178049 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
16178089 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
16178129 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
16178170 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
16178194 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:16184029 original size:40 final size:40
Alignment explanation
Indices: 16183959--16184125 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
16183949 CGGGGTTTAG
** * *
16183959 CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAAC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
16183998 CCGGATAT-GATCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAG-TCACTAGCACAAATGCCTTCGGGTCTTAAC
* * **
16184038 CCGGATATAGTCGCTAGCACAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * *
16184078 CC-GATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGTCTTAAC
16184118 CCGGATAT
1 CCGGATAT
16184126 CATTCGATAA
Statistics
Matches: 105, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 25 0.24
40 75 0.71
41 5 0.05
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:16190139 original size:68 final size:69
Alignment explanation
Indices: 16190086--16190215 Score: 160
Period size: 71 Copynumber: 1.9 Consensus size: 69
16190076 ATACTATGTA
* * *
16190086 GTAGCTAGGTCACATGTGTGA-TAC-AG-GATGTATC-CCATGTAGACAAGAGAGCTACGTGAGA
1 GTAGCTAGGTCACATGCGTGATTACAAGTGAAGGA-CACCATGTAGACAAGAGAGCTAC--GAGA
16190147 GATAAAT
63 GATAAAT
* *
16190154 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 GTAGCTAGGTCACATGCGTGATTACAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
16190216 CAAATCGGCT
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
68 19 0.36
69 6 0.11
70 3 0.06
71 25 0.47
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (69 bp):
GTAGCTAGGTCACATGCGTGATTACAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAGAT
AAAT
Found at i:16192766 original size:16 final size:16
Alignment explanation
Indices: 16192747--16192778 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
16192737 AATTGTTTTA
16192747 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
16192763 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
16192779 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:16193154 original size:51 final size:50
Alignment explanation
Indices: 16192988--16193369 Score: 267
Period size: 50 Copynumber: 7.6 Consensus size: 50
16192978 CTTTGGTATG
*** *
16192988 CATAGTAGCCTGCACTTAGTACTACACATACGACCTATAA-T-TCTG-GTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGATC-A-AACTATC-GAGTACA
** * * * *
16193038 TGTAGTAGCCTGCACTTAGTACTACATACGTGA-CTTATCCATCTGA-TACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGATC-AAACTATC-GAGTACA
* * ** * *
16193088 CGTAGTAGCCTGCACTTGGTACTACACACGTGATCGAAGTTAACGAGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGATC-AAACTATCGAGTACA
* * * *
16193139 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGA-TACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGATCAAACTATC-GAGTACA
* *
16193189 CGTAGTAGCCTACACTTAGTACTACACACGTGATCAAAACTATCGAGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGATC-AAACTATCGAGTACA
* * * * * * * *
16193240 CATAGTAGCTTGCACTTAGTACTGCACATGCGACCTAACAATTTG-GTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGATCAAACTA-TCGAGTACA
* * * * * *
16193290 CGTAGTAGCCTGCACTTAGTACTACACACATGACCTAAAACTGTCTTA-AACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA--TCAAACTATC-GAGTACA
*
16193342 CATAGTAGCCTGCACATAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
16193370 TGTGTTCTCA
Statistics
Matches: 258, Mismatches: 61, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
48 1 0.00
49 2 0.01
50 142 0.55
51 81 0.31
52 32 0.12
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGATCAAACTATCGAGTACA
Found at i:16193172 original size:101 final size:101
Alignment explanation
Indices: 16193040--16193373 Score: 427
Period size: 101 Copynumber: 3.3 Consensus size: 101
16193030 CTGGTACATG
* * * *
16193040 TAGTAGCCTGCACTTAGTACTACATACGTGACTTATCCATCTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
* * ** *
16193105 GGTACTACACACGTGATCGAAGTTAACGAGTACGCA
66 AGTACTACACACGTGATCAAAACTAACGAGTACACA
*
16193141 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACGTAGTAGCCTACACTT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
*
16193206 AGTACTACACACGTGATCAAAACTATCGAGTACACA
66 AGTACTACACACGTGATCAAAACTAACGAGTACACA
* * * * * *
16193242 TAGTAGCTTGCACTTAGTACTGCACATGCGACCTAACAATTTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
* * ** * *
16193307 AGTACTACACACATGACCTAAAACTGTCTTA-AACACA
66 AGTACTACACACGTGATC-AAAACTAAC-GAGTACACA
*
16193344 TAGTAGCCTGCACATAGTACTACACATGTG
1 TAGTAGCCTGCACTTAGTACTACACATGTG
16193374 TTCTCACAAC
Statistics
Matches: 204, Mismatches: 27, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
101 164 0.80
102 39 0.19
103 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
AGTACTACACACGTGATCAAAACTAACGAGTACACA
Found at i:16193296 original size:151 final size:149
Alignment explanation
Indices: 16192988--16193369 Score: 385
Period size: 151 Copynumber: 2.5 Consensus size: 149
16192978 CTTTGGTATG
* * *
16192988 CATAGTAGCCTGCACTTAGTACTACACATACGACCTATA-ATTCTGGTACATGTAGTAGCCTGCA
1 CATAGTAGCCTGCACTTAGTACTACACATATGACCTA-ACA-TCTGATACACGTAGTAGCCTGCA
* ** * * *
16193052 CTTAGTACTACATACGTGACTTATCCATCTGATACACGTAGTAGCCTGCACTTGGTACTACACAC
64 CTTAGTACTACACACGTGACAAAACCATCTGATACACATAGTAGCCTGCACTTAGTACTACACAC
* * * * *
16193117 GTGATCGAAGTTAACGAGTACG
129 GCGACCAAAATT-ACGAGTACA
* *
16193139 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACGTAGTAGCCTACAC
1 CATAGTAGCCTGCACTTAGTACTACACATATGACCTAA-CATCTGATACACGTAGTAGCCTGCAC
* * *
16193204 TTAGTACTACACACGTGATCAAAACTATC-GAGTACACATAGTAGCTTGCACTTAGTACTGCACA
65 TTAGTACTACACACGTGA-CAAAACCATCTGA-TACACATAGTAGCCTGCACTTAGTACTACACA
* *
16193268 TGCGACCTAACAATT-TG-GTACA
128 CGCGACC-AA-AATTACGAGTACA
* * * * * *
16193290 CGTAGTAGCCTGCACTTAGTACTACACACATGACCTAAAACTGTCTTAAACACATAGTAGCCTGC
1 CATAGTAGCCTGCACTTAGTACTACACATATGACCT--AAC-ATCTGATACACGTAGTAGCCTGC
*
16193355 ACATAGTACTACACA
63 ACTTAGTACTACACA
16193370 TGTGTTCTCA
Statistics
Matches: 192, Mismatches: 30, Indels: 16
0.81 0.13 0.07
Matches are distributed among these distances:
150 1 0.01
151 112 0.58
152 41 0.21
153 35 0.18
154 3 0.02
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (149 bp):
CATAGTAGCCTGCACTTAGTACTACACATATGACCTAACATCTGATACACGTAGTAGCCTGCACT
TAGTACTACACACGTGACAAAACCATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGC
GACCAAAATTACGAGTACA
Found at i:16193755 original size:19 final size:20
Alignment explanation
Indices: 16193725--16193771 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
16193715 AAGAACATGT
16193725 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
16193746 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
16193765 TATATAT
1 TATATAT
16193772 GCTTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:16198779 original size:47 final size:45
Alignment explanation
Indices: 16198712--16198883 Score: 154
Period size: 46 Copynumber: 3.7 Consensus size: 45
16198702 GGGTTATTGT
* * *
16198712 GGGCTAGT-AAAGACATGTCTGGGACATGCATCGGCCA-TATTATAA
1 GGGCTAGTGTAAGACATGTCTGGGACATGCATCGG-CATTA-GACAA
*
16198757 GGGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGAGACAA
1 GGGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATT-AGACAA
* * * * *
16198805 GTGCTAGTGTAAGACATGTTTGGGACATGCATCAGCCTCGAGACGTAA
1 GGGCTAGTGTAAGACATGTCTGGGACATGCATCGGCAT-TAGAC--AA
*
16198853 --GCCAGTGTAAGACATGTCTGGGACATGCATC
1 GGGCTAGTGTAAGACATGTCTGGGACATGCATC
16198884 AGCTACAAAA
Statistics
Matches: 107, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
45 8 0.07
46 44 0.41
47 29 0.27
48 25 0.23
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (45 bp):
GGGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTAGACAA
Found at i:16198905 original size:46 final size:46
Alignment explanation
Indices: 16198810--16198931 Score: 140
Period size: 46 Copynumber: 2.6 Consensus size: 46
16198800 GACAAGTGCT
* * *
16198810 AGTGTAAGACATGTTTGGGACATGCATCAGCCTCGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAAACGTAAGCC
* *
16198856 AGTGTAAGACATGTCTGGGACATGCATCAG-CTACAAAATG-ATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCT-CAAAACGTA-AGCC
*
16198902 AGTGTAAGACCATGTCTAGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
16198932 GACTTGGGAT
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
45 3 0.05
46 45 0.68
47 13 0.20
48 5 0.08
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAAACGTAAGCC
Found at i:16200163 original size:22 final size:21
Alignment explanation
Indices: 16200129--16200169 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
16200119 TCGATTTGGT
*
16200129 CACACGGGCGTGTTGCCCCTCC
1 CACACAGGCGTG-TGCCCCTCC
*
16200151 CACACAGGTGTGTGCCCCT
1 CACACAGGCGTGTGCCCCT
16200170 GTGTCAAGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.12, C:0.41, G:0.27, T:0.20
Consensus pattern (21 bp):
CACACAGGCGTGTGCCCCTCC
Done.