Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 63 of 250
Found at i:19367633 original size:6 final size:6
Alignment explanation
Indices: 19367624--19367698 Score: 73
Period size: 6 Copynumber: 12.3 Consensus size: 6
19367614 CTATCACCTA
* *
19367624 ATTCTG ATTCTG ATTCTG ATCCTG ATTCTG ATTCTG -TCACCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* *
19367673 ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
19367699 AATGTTTCTT
Statistics
Matches: 56, Mismatches: 8, Indels: 10
0.76 0.11 0.14
Matches are distributed among these distances:
5 2 0.04
6 49 0.88
7 4 0.07
8 1 0.02
ACGTcount: A:0.17, C:0.20, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:19367633 original size:19 final size:19
Alignment explanation
Indices: 19367603--19367677 Score: 78
Period size: 19 Copynumber: 3.7 Consensus size: 19
19367593 ATTCTCATTT
*
19367603 TGATTCTAATTCTATCACC
1 TGATTCTGATTCTATCACC
*
19367622 TAATTCTGATTCTGATTCTGATCC
1 TGATTCTGATTCT-A-TC--A-CC
*
19367646 TGATTCTGATTCTGTCACC
1 TGATTCTGATTCTATCACC
19367665 TGATTCTGATTCT
1 TGATTCTGATTCT
19367678 CATTTTGATT
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
19 26 0.55
20 2 0.04
21 2 0.04
22 2 0.04
23 1 0.02
24 14 0.30
ACGTcount: A:0.20, C:0.23, G:0.12, T:0.45
Consensus pattern (19 bp):
TGATTCTGATTCTATCACC
Found at i:19367687 original size:37 final size:37
Alignment explanation
Indices: 19367593--19367695 Score: 107
Period size: 43 Copynumber: 2.6 Consensus size: 37
19367583 TTGCATTCAC
19367593 ATTCTCATTTTGATTCTAATTCTATCACCTAATTCTG
1 ATTCTCATTTTGATTCTAATTCTATCACCTAATTCTG
* * * *
19367630 ATTCTGATTCTGATCCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTCA-T-T--T--TGATTCTAATTCTATCACCTAATTCTG
*
19367673 ATTCTCATTTTGATTCTAGTTCT
1 ATTCTCATTTTGATTCTAATTCT
19367696 GATAATGTTT
Statistics
Matches: 53, Mismatches: 7, Indels: 12
0.74 0.10 0.17
Matches are distributed among these distances:
37 17 0.32
38 1 0.02
39 2 0.04
41 2 0.04
42 1 0.02
43 30 0.57
ACGTcount: A:0.19, C:0.21, G:0.11, T:0.49
Consensus pattern (37 bp):
ATTCTCATTTTGATTCTAATTCTATCACCTAATTCTG
Found at i:19367698 original size:43 final size:43
Alignment explanation
Indices: 19367603--19367686 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
19367593 ATTCTCATTT
* *
19367603 TGATTCTAATTCTATCACCTAATTCTGATTCTGATTCTGATCC
1 TGATTCTGATTCTATCACCTAATTCTGATTCTCATTCTGATCC
* * *
19367646 TGATTCTGATTCTGTCACCTGATTCTGATTCTCATTTTGAT
1 TGATTCTGATTCTATCACCTAATTCTGATTCTCATTCTGAT
19367687 TCTAGTTCTG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.20, C:0.21, G:0.12, T:0.46
Consensus pattern (43 bp):
TGATTCTGATTCTATCACCTAATTCTGATTCTCATTCTGATCC
Found at i:19369590 original size:27 final size:27
Alignment explanation
Indices: 19369560--19369642 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 27
19369550 ATCTCATATC
* * *
19369560 TGTAGGCTAGCATTATTGAAATACCCT
1 TGTAGGGTAGAATTACTGAAATACCCT
*
19369587 TGTAGGGTAGAATTACTGAAATACCCA
1 TGTAGGGTAGAATTACTGAAATACCCT
**
19369614 TGTAGGGTAGAATTACCAAAATACCCT
1 TGTAGGGTAGAATTACTGAAATACCCT
19369641 TG
1 TG
19369643 GTTTATAAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (27 bp):
TGTAGGGTAGAATTACTGAAATACCCT
Found at i:19369654 original size:27 final size:27
Alignment explanation
Indices: 19369624--19369719 Score: 113
Period size: 27 Copynumber: 3.6 Consensus size: 27
19369614 TGTAGGGTAG
19369624 AATTACCAAAATACC-CTTGGTTTATAA
1 AATTACCAAAATACCAC-TGGTTTATAA
*
19369651 AATTACCAAAATACCACTGGTTTGTAA
1 AATTACCAAAATACCACTGGTTTATAA
* * * *
19369678 AATTACCAAAATACCTCTGATTTGTGA
1 AATTACCAAAATACCACTGGTTTATAA
**
19369705 AATTACTGAAATACC
1 AATTACCAAAATACC
19369720 CTCGACCTGT
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
27 61 0.98
28 1 0.02
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCACTGGTTTATAA
Found at i:19369655 original size:54 final size:55
Alignment explanation
Indices: 19369597--19369720 Score: 130
Period size: 54 Copynumber: 2.3 Consensus size: 55
19369587 TGTAGGGTAG
* *
19369597 AATTACTGAAATACCCA-T-GTAGGGTAGAATTACCAAAATACC-CTTGGTTTATAA
1 AATTACTGAAATACCCACTGGT-GGGTAAAATTACCAAAATACCTC-TGATTTATAA
** ** * *
19369651 AATTACCAAAATA-CCACTGGTTTGTAAAATTACCAAAATACCTCTGATTTGTGA
1 AATTACTGAAATACCCACTGGTGGGTAAAATTACCAAAATACCTCTGATTTATAA
19369705 AATTACTGAAATACCC
1 AATTACTGAAATACCC
19369721 TCGACCTGTA
Statistics
Matches: 56, Mismatches: 10, Indels: 7
0.77 0.14 0.10
Matches are distributed among these distances:
53 3 0.05
54 48 0.86
55 5 0.09
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.30
Consensus pattern (55 bp):
AATTACTGAAATACCCACTGGTGGGTAAAATTACCAAAATACCTCTGATTTATAA
Found at i:19369758 original size:27 final size:27
Alignment explanation
Indices: 19369673--19369778 Score: 110
Period size: 27 Copynumber: 3.9 Consensus size: 27
19369663 ACCACTGGTT
** **
19369673 TGTAAAATTACCAAAATA-CCTCTGATT
1 TGTAAAATTACTGAAATACCCTC-GACC
*
19369700 TGTGAAATTACTGAAATACCCTCGACC
1 TGTAAAATTACTGAAATACCCTCGACC
19369727 TGTAAAATTACTGAAATACCCTCGA-C
1 TGTAAAATTACTGAAATACCCTCGACC
*
19369753 TGGTAAAATTAC-CAAAGTACCCTCGA
1 T-GTAAAATTACTGAAA-TACCCTCGA
19369779 TTTACAGAAT
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
26 5 0.07
27 60 0.87
28 4 0.06
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.27
Consensus pattern (27 bp):
TGTAAAATTACTGAAATACCCTCGACC
Found at i:19369762 original size:54 final size:54
Alignment explanation
Indices: 19369673--19369778 Score: 126
Period size: 54 Copynumber: 2.0 Consensus size: 54
19369663 ACCACTGGTT
* * * *
19369673 TGTAAAATTACCAAAATACCTCTGATTTGTGAAATTACTGAAA-TACCCTCGACC
1 TGTAAAATTACCAAAATACCTCTGACTGGTAAAATTAC-CAAAGTACCCTCGACC
**
19369727 TGTAAAATTACTGAAATACC-CTCGACTGGTAAAATTACCAAAGTACCCTCGA
1 TGTAAAATTACCAAAATACCTCT-GACTGGTAAAATTACCAAAGTACCCTCGA
19369779 TTTACAGAAT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
53 5 0.11
54 39 0.89
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.27
Consensus pattern (54 bp):
TGTAAAATTACCAAAATACCTCTGACTGGTAAAATTACCAAAGTACCCTCGACC
Found at i:19369789 original size:27 final size:27
Alignment explanation
Indices: 19369770--19370152 Score: 406
Period size: 27 Copynumber: 14.2 Consensus size: 27
19369760 ATTACCAAAG
*
19369770 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
**
19369797 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * * *
19369824 TACCCTCAATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
19369851 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
19369878 TACCCTCAATTTACAAAATTATCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
19369905 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * ***
19369932 CACCTTCGATTTACAGAATTAATGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * * **
19369959 TACCCTCGAATTATAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
**
19369986 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * * *
19370013 TACCCTCGATCTATAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
19370040 TACCCTCGATTTACAAAATTTCTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
19370067 TATCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
19370094 TACCCTCGTTTTACAGAACTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
19370121 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
19370148 TACCC
1 TACCC
19370153 CTAGGGTGTT
Statistics
Matches: 301, Mismatches: 55, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 301 1.00
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:19369828 original size:81 final size:81
Alignment explanation
Indices: 19369770--19370152 Score: 498
Period size: 81 Copynumber: 4.7 Consensus size: 81
19369760 ATTACCAAAG
* * * *
19369770 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
* *
19369835 TACAAAATTATCGTTT
66 TACAGAATTACCGTTT
* * *
19369851 TACCCTCGATTTATAGAATTACTATTTTACCCTCAATTTACAAAATTA-TCATTTTACCCTCGAT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACT-ATTTTACCCTCGAT
19369915 TTACAGAATTACCGTTT
65 TTACAGAATTACCGTTT
* * * * * *
19369932 CACCTTCGATTTACAGAATTAATGTTTTACCCTCGAATTATAAAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
*
19369997 TACAGAATTACTGTTT
66 TACAGAATTACCGTTT
* * * * * *
19370013 TACCCTCGATCTATAAAATTACTATTTTACCCTCGATTTACAAAATTTCTATTTTATCCTCGATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
*
19370078 TACAGAATTATCGTTT
66 TACAGAATTACCGTTT
* * * * *
19370094 TACCCTCGTTTTACAGAACTACCGTTTTACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTTTACCC
19370153 CTAGGGTGTT
Statistics
Matches: 256, Mismatches: 44, Indels: 4
0.84 0.14 0.01
Matches are distributed among these distances:
80 1 0.00
81 254 0.99
82 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
TACAGAATTACCGTTT
Found at i:19370694 original size:6 final size:6
Alignment explanation
Indices: 19370685--19370792 Score: 78
Period size: 6 Copynumber: 17.7 Consensus size: 6
19370675 TACTTGATAT
* * * *
19370685 TGATTC TGATTC TAATTC TG-TCAC TTAATTC TGATTC TGATTT TGATTC
1 TGATTC TGATTC TGATTC TGAT-TC -TGATTC TGATTC TGATTC TGATTC
* * * *
19370734 TGATTC TGATTT TG-TCAC TTGATTC TGATTC TGATTC TCATTT TGATTC
1 TGATTC TGATTC TGAT-TC -TGATTC TGATTC TGATTC TGATTC TGATTC
19370783 T-AGTTC TGAT
1 TGA-TTC TGAT
19370793 AATGTTTCTT
Statistics
Matches: 78, Mismatches: 16, Indels: 16
0.71 0.15 0.15
Matches are distributed among these distances:
5 3 0.04
6 67 0.86
7 6 0.08
8 2 0.03
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.52
Consensus pattern (6 bp):
TGATTC
Found at i:19370732 original size:43 final size:43
Alignment explanation
Indices: 19370679--19370790 Score: 152
Period size: 43 Copynumber: 2.6 Consensus size: 43
19370669 TTATGTTACT
*
19370679 TGATATTGATTCTGATTCTAATTCTGTCACTTAATTCTGATTC
1 TGATTTTGATTCTGATTCTAATTCTGTCACTTAATTCTGATTC
* * *
19370722 TGATTTTGATTCTGATTCTGATTTTGTCACTTGATTCTGATTC
1 TGATTTTGATTCTGATTCTAATTCTGTCACTTAATTCTGATTC
* * * *
19370765 TGATTCTCATTTTGATTCTAGTTCTG
1 TGATTTTGATTCTGATTCTAATTCTG
19370791 ATAATGTTTC
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.19, C:0.15, G:0.14, T:0.52
Consensus pattern (43 bp):
TGATTTTGATTCTGATTCTAATTCTGTCACTTAATTCTGATTC
Found at i:19372684 original size:27 final size:27
Alignment explanation
Indices: 19372654--19372736 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 27
19372644 ATCTCATATC
* * *
19372654 TGTAGGCTAGCATTACTGAAATACCCT
1 TGTAGGGTAGAATTACTAAAATACCCT
*
19372681 TGTAGGGTAGAATTACTAAAATACCCC
1 TGTAGGGTAGAATTACTAAAATACCCT
* *
19372708 TATAGGGTAGAATTACCAAAATACCCT
1 TGTAGGGTAGAATTACTAAAATACCCT
19372735 TG
1 TG
19372737 GTTTATAAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (27 bp):
TGTAGGGTAGAATTACTAAAATACCCT
Found at i:19372897 original size:27 final size:27
Alignment explanation
Indices: 19372718--19372902 Score: 160
Period size: 27 Copynumber: 6.9 Consensus size: 27
19372708 TATAGGGTAG
* * *
19372718 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTCGATTTGTAA
* *
19372745 AATTACCAAAATACCC-CTAGTTTATAA
1 AATTACCAAAATACCCTCGA-TTTGTAA
*
19372772 AATTACCAAAATATCCCTAG-TTTGTAA
1 AATTACCAAAATA-CCCTCGATTTGTAA
* * *
19372799 AATTATCAAAATA-CCTCTAATTTGTGA
1 AATTACCAAAATACCCTC-GATTTGTAA
* ** **
19372826 AATTGCTGAAATACCCTCGACCTGTAA
1 AATTACCAAAATACCCTCGATTTGTAA
** *
19372853 AATTACTGAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTCGATTTGTAA
*
19372880 AATTACCAAAGTACCCTCGATTT
1 AATTACCAAAATACCCTCGATTT
19372903 ACAGAATTAC
Statistics
Matches: 128, Mismatches: 24, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
25 3 0.02
27 118 0.92
28 7 0.05
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTCGATTTGTAA
Found at i:19372910 original size:27 final size:27
Alignment explanation
Indices: 19372891--19373273 Score: 424
Period size: 27 Copynumber: 14.2 Consensus size: 27
19372881 ATTACCAAAG
*
19372891 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
19372918 TACCCTCTATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
19372945 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
** *
19372972 TACCCTTAATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
19372999 TACCCTTGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
19373026 TACCCTCAATTTACAGAATTATCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* **
19373053 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * **
19373080 TACCCTCGAATTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* ***
19373107 TACCCTCGATTTACAAAATTATTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
19373134 TACCCTCGATTTATAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
19373161 TACCCTTGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
** * * *
19373188 TATTCTCGATTTTCAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
19373215 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
19373242 TACCCTCGATTTATAAAAATACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
19373269 TACCC
1 TACCC
19373274 CTAGGGTTTA
Statistics
Matches: 304, Mismatches: 52, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 304 1.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:19373172 original size:108 final size:108
Alignment explanation
Indices: 19372891--19373273 Score: 495
Period size: 108 Copynumber: 3.5 Consensus size: 108
19372881 ATTACCAAAG
* * *
19372891 TACCCTCGATTTACAGAATTACCGTTTTACCCTCTATTTACAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
* * * *
19372956 TACAAAATTACCGTTTTACCCT-TAATTTACAGAATTACTATTT
66 TACAAAATTACTGTTTTACCCTCGAA-TTATAGAATTACTGTTT
* * * *
19372999 TACCCTTGATTTACAAAATTACCATTTTACCCTCAATTTACAGAATTA-TCATTTTACCCTCGAT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACT-ATTTTACCCTCGAT
19373063 TTACAAAATTACTGTTTTACCCTCGAATTATAGAATTACTGTTT
65 TTACAAAATTACTGTTTTACCCTCGAATTATAGAATTACTGTTT
** * *
19373107 TACCCTCGATTTACAAAATTATTGTTTTACCCTCGATTTATAAAATTACTATTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
* ** *
19373172 TACAAAATTACTATTTTATTCTCG-ATTTTCAGAATTA-TCGTTT
66 TACAAAATTACTGTTTTACCCTCGAATTAT-AGAATTACT-GTTT
* * * *
19373215 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAAAAATACCATTTTACCC
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCC
19373274 CTAGGGTTTA
Statistics
Matches: 245, Mismatches: 25, Indels: 10
0.88 0.09 0.04
Matches are distributed among these distances:
107 6 0.02
108 236 0.96
109 3 0.01
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.42
Consensus pattern (108 bp):
TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
TACAAAATTACTGTTTTACCCTCGAATTATAGAATTACTGTTT
Found at i:19373269 original size:81 final size:81
Alignment explanation
Indices: 19372891--19373273 Score: 496
Period size: 81 Copynumber: 4.7 Consensus size: 81
19372881 ATTACCAAAG
* * *
19372891 TACCCTCGATTTACAGAATTACCGTTTTACCCTCTATTTACAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
*
19372956 TACAAAATTACCGTTT
66 TACAAAATTATCGTTT
** * * * *
19372972 TACCCTTAATTTACAGAATTACTATTTTACCCTTGATTTACAAAATTACCATTTTACCCTCAATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
* *
19373037 TACAGAATTATCATTT
66 TACAAAATTATCGTTT
* * * * *
19373053 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGAATTATAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
*
19373118 TACAAAATTATTGTTT
66 TACAAAATTATCGTTT
* * * * **
19373134 TACCCTCGATTTATAAAATTACTATTTTACCCTTGATTTACAAAATTACTATTTTATTCTCGATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
* *
19373199 TTCAGAATTATCGTTT
66 TACAAAATTATCGTTT
* * * *
19373215 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAAAAATACCATTTTACCC
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTTTACCC
19373274 CTAGGGTTTA
Statistics
Matches: 254, Mismatches: 48, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 254 1.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.42
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
TACAAAATTATCGTTT
Found at i:19373552 original size:27 final size:26
Alignment explanation
Indices: 19373508--19373559 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
19373498 CTCGCTGCAA
*
19373508 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
19373535 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
19373560 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:19373809 original size:25 final size:25
Alignment explanation
Indices: 19373781--19373869 Score: 85
Period size: 25 Copynumber: 3.6 Consensus size: 25
19373771 CATTCACATT
*
19373781 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTGATA
*
19373806 CTGATTTTGATTCTGATT--CTG-TCA
1 CTGATTCTGATTCTG-TTACCTGAT-A
* * *
19373830 CCTGATTCTGATTCTGTCACCTAATT
1 -CTGATTCTGATTCTGTTACCTGATA
19373856 CTGATTCTGATTCT
1 CTGATTCTGATTCT
19373870 CATTTTGATT
Statistics
Matches: 54, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
23 1 0.02
24 5 0.09
25 43 0.80
26 4 0.07
27 1 0.02
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTGATA
Found at i:19373816 original size:6 final size:6
Alignment explanation
Indices: 19373800--19373890 Score: 53
Period size: 6 Copynumber: 14.8 Consensus size: 6
19373790 ATTCTGTTAC
* * * *
19373800 CTGATA CTGATT TTGATT CTGATT CTG-TCAC CTGATT CTGATT CTG-TCAC
1 CTGATT CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGAT--T
* * *
19373850 CTAATT CTGATT CTGATT CTCATT TTGATT CT-AGTT CTGAT
1 CTGATT CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
19373891 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 13, Indels: 16
0.69 0.14 0.17
Matches are distributed among these distances:
5 3 0.05
6 53 0.83
7 6 0.09
8 2 0.03
ACGTcount: A:0.19, C:0.20, G:0.14, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:19373823 original size:31 final size:31
Alignment explanation
Indices: 19373782--19373842 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
19373772 ATTCACATTC
* *
19373782 TGATTTTGATTCTGTTACCTGATACTGATTT
1 TGATTCTGATTCTGTCACCTGATACTGATTT
*
19373813 TGATTCTGATTCTGTCACCTGATTCTGATT
1 TGATTCTGATTCTGTCACCTGATACTGATT
19373843 CTGTCACCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.18, C:0.16, G:0.16, T:0.49
Consensus pattern (31 bp):
TGATTCTGATTCTGTCACCTGATACTGATTT
Found at i:19373837 original size:19 final size:19
Alignment explanation
Indices: 19373813--19373864 Score: 95
Period size: 19 Copynumber: 2.7 Consensus size: 19
19373803 ATACTGATTT
19373813 TGATTCTGATTCTGTCACC
1 TGATTCTGATTCTGTCACC
19373832 TGATTCTGATTCTGTCACC
1 TGATTCTGATTCTGTCACC
*
19373851 TAATTCTGATTCTG
1 TGATTCTGATTCTG
19373865 ATTCTCATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.17, C:0.23, G:0.15, T:0.44
Consensus pattern (19 bp):
TGATTCTGATTCTGTCACC
Found at i:19375781 original size:27 final size:27
Alignment explanation
Indices: 19375751--19375833 Score: 121
Period size: 27 Copynumber: 3.1 Consensus size: 27
19375741 ATCTCATATC
* *
19375751 TGTAGGCTAGCATTACTGAAATACCCT
1 TGTAGGGTAGAATTACTGAAATACCCT
*
19375778 TGTAGGGTAGAATTACTGAAATACCCC
1 TGTAGGGTAGAATTACTGAAATACCCT
**
19375805 TGTAGGGTAGAATTACCAAAATACCCT
1 TGTAGGGTAGAATTACTGAAATACCCT
19375832 TG
1 TG
19375834 GTTTATAAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (27 bp):
TGTAGGGTAGAATTACTGAAATACCCT
Found at i:19375845 original size:27 final size:27
Alignment explanation
Indices: 19375815--19375999 Score: 176
Period size: 27 Copynumber: 6.9 Consensus size: 27
19375805 TGTAGGGTAG
* *
19375815 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
19375842 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
*
19375869 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
* *
19375896 AATTACCAAAATA-CCTCTGATTTATGA
1 AATTACCAAAATACCCT-TGATTTGTAA
** * **
19375923 AATTACTGAAATACCTTTGACCTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
** * *
19375950 AATTACTGAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
19375977 AATTACCAAAGTACCCTCGATTT
1 AATTACCAAAATACCCTTGATTT
19376000 ATAGATTTAC
Statistics
Matches: 134, Mismatches: 20, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
26 2 0.01
27 129 0.96
28 3 0.02
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGTAA
Found at i:19375846 original size:54 final size:54
Alignment explanation
Indices: 19375796--19375910 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
19375786 AGAATTACTG
* * *
19375796 AAATACCCCT-GTAGGGTAGAATTACCAAAATACCCTTGGTTTATAAAATTACCA
1 AAATACCCCTGGT-GGGTAAAATTACCAAAATACCCCTAGTTTATAAAATTACCA
** *
19375850 AAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCA
1 AAATACCCCTGGTGGGTAAAATTACCAAAATACCCCTAGTTTATAAAATTACCA
19375904 AAATACC
1 AAATACC
19375911 TCTGATTTAT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 52 0.96
55 2 0.04
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (54 bp):
AAATACCCCTGGTGGGTAAAATTACCAAAATACCCCTAGTTTATAAAATTACCA
Found at i:19375900 original size:81 final size:81
Alignment explanation
Indices: 19375815--19376002 Score: 209
Period size: 81 Copynumber: 2.3 Consensus size: 81
19375805 TGTAGGGTAG
* ***
19375815 AATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAA
1 AATTACCAAAATACCCTTGATTTATAAAATTACCAAAATACCCCTGACCTGTAAAATTACCAAAA
*
19375880 TACCCCTAG-TTTGTAA
66 TA-CCCTAGACTTGTAA
* ** ** **
19375896 AATTACCAAAATA-CCTCTGATTTATGAAATTACTGAAATACCTTTGACCTGTAAAATTACTGAA
1 AATTACCAAAATACCCT-TGATTTATAAAATTACCAAAATACCCCTGACCTGTAAAATTACCAAA
*
19375960 ATACCCTCGACTTGTAA
65 ATACCCTAGACTTGTAA
* *
19375977 AATTACCAAAGTACCCTCGATTTATA
1 AATTACCAAAATACCCTTGATTTATA
19376003 GATTTACCGT
Statistics
Matches: 88, Mismatches: 16, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
80 8 0.09
81 77 0.88
82 3 0.03
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCTTGATTTATAAAATTACCAAAATACCCCTGACCTGTAAAATTACCAAAA
TACCCTAGACTTGTAA
Found at i:19376018 original size:27 final size:27
Alignment explanation
Indices: 19375961--19376370 Score: 363
Period size: 27 Copynumber: 15.2 Consensus size: 27
19375951 ATTACTGAAA
* ** ***
19375961 TACCCTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTACAAAATTACCATTT
* * * *
19375988 TACCCTCGATTTATAGATTTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
**
19376015 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCATTT
*
19376042 TACCCTCGATTTACAAAATTATCATTT
1 TACCCTCGATTTACAAAATTACCATTT
*
19376069 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
19376096 TACCCTCAATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACCATTT
* * * *
19376123 TACCTTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
* * **
19376150 TACCCTCGATTTATAGAATTAGTATTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
19376177 TACCCTCAATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACCATTT
* * * **
19376204 TACCC-CTAATCTACAGAATTACTTTTT
1 TACCCTC-GATTTACAAAATTACCATTT
* * * *
19376231 TACCCTCGATCTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
* **
19376258 TACCCTCGATTTATAAAATTAGTATTT
1 TACCCTCGATTTACAAAATTACCATTT
* * * *
19376285 TATCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
* * * * *
19376312 TACCATCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
19376339 TACCCTTGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
19376366 TACCC
1 TACCC
19376371 CTAGGGTGTT
Statistics
Matches: 321, Mismatches: 60, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
26 1 0.00
27 319 0.99
28 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCATTT
Found at i:19376200 original size:81 final size:81
Alignment explanation
Indices: 19375988--19376370 Score: 473
Period size: 81 Copynumber: 4.7 Consensus size: 81
19375978 ATTACCAAAG
* * *
19375988 TACCCTCGATTTATAGATTTACCGTTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
* * *
19376053 TACAAAATTATCATTT
66 TACAGAATTACCGTTT
* * * * * *
19376069 TACCCTCGATTTACAAAATTACTATTTTACCCTCAATTTACAAAATTACTATTTTACCTTTGATT
1 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
19376134 TACAGAATTACCGTTT
66 TACAGAATTACCGTTT
* * * *
19376150 TACCCTCGATTTATAGAATTAGTATTTTACCCTCAATTTACAAAATTACTATTTTACCC-CTAAT
1 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTC-GAT
* **
19376214 CTACAGAATTACTTTTT
65 TTACAGAATTACCGTTT
* * * * *
19376231 TACCCTCGATCTATAGAATTACCGTTTTACCCTCGATTTATAAAATTAGTATTTTATCCTCGATT
1 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
*
19376296 TACAGAATTATCGTTT
66 TACAGAATTACCGTTT
* * * *
19376312 TACCATCGATTTATAGAATTA-TCGTTTTACCCTTGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTATAGAATTACT-GTTTTACCCTCGATTTACAAAATTACTATTTTACCC
19376371 CTAGGGTGTT
Statistics
Matches: 258, Mismatches: 41, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
81 257 1.00
82 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.42
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
TACAGAATTACCGTTT
Found at i:19376718 original size:67 final size:67
Alignment explanation
Indices: 19376587--19376721 Score: 166
Period size: 67 Copynumber: 2.0 Consensus size: 67
19376577 GAAGAAGCGT
* * * * *
19376587 TCTGGCAGCCTCGCTGCAATCTGGTGGTCTCGCCACATAAATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGTCTCGCCACATAAATATATTCTGGTGACCTAGCCACAA
19376652 TA
66 TA
* * *
19376654 TCTGGCAGCCTCGCTGTAATCTGGTGG-CTTCGTCACATATATATATTCTGGT-AGCCTAGCCAC
1 TCTGGCAGCCTCGCTGCAATCTGGTGGTC-TCGCCACATAAATATATTCTGGTGA-CCTAGCCAC
19376717 AATA
64 AATA
19376721 T
1 T
19376722 TTGTATCTGG
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
66 2 0.03
67 56 0.97
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGTCTCGCCACATAAATATATTCTGGTGACCTAGCCACAA
TA
Found at i:19376905 original size:31 final size:31
Alignment explanation
Indices: 19376870--19376973 Score: 121
Period size: 31 Copynumber: 3.5 Consensus size: 31
19376860 TTGCTTTCAC
*
19376870 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTCACCTGATACTG
* *
19376901 ATTCTGATTCTAATTCTGTCACC---TA---
1 ATTCTGATTTTGATTCTGTCACCTGATACTG
*
19376926 ATTCTGATTTTGATTCTGTCACCTGATTCTG
1 ATTCTGATTTTGATTCTGTCACCTGATACTG
*
19376957 ATTCTCATTTTGATTCT
1 ATTCTGATTTTGATTCT
19376974 AGTTCTGATA
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
25 21 0.35
28 3 0.05
31 36 0.60
ACGTcount: A:0.19, C:0.19, G:0.12, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTCACCTGATACTG
Found at i:19376909 original size:6 final size:6
Alignment explanation
Indices: 19376870--19376982 Score: 54
Period size: 6 Copynumber: 18.3 Consensus size: 6
19376860 TTGCTTTCAC
* * *
19376870 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * * *
19376919 -TCACCTA ATTCTG ATTTTG ATTCTG -TCACCTG ATTCTG ATTCTC ATTTTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
19376969 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
19376983 AATGTTTCTT
Statistics
Matches: 78, Mismatches: 18, Indels: 22
0.66 0.15 0.19
Matches are distributed among these distances:
5 5 0.06
6 61 0.78
7 9 0.12
8 3 0.04
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:19376929 original size:25 final size:25
Alignment explanation
Indices: 19376901--19376961 Score: 95
Period size: 25 Copynumber: 2.4 Consensus size: 25
19376891 CCTGATACTG
19376901 ATTCTGATTCTAATTCTGTCACCTA
1 ATTCTGATTCTAATTCTGTCACCTA
* * *
19376926 ATTCTGATTTTGATTCTGTCACCTG
1 ATTCTGATTCTAATTCTGTCACCTA
19376951 ATTCTGATTCT
1 ATTCTGATTCT
19376962 CATTTTGATT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.20, C:0.21, G:0.11, T:0.48
Consensus pattern (25 bp):
ATTCTGATTCTAATTCTGTCACCTA
Found at i:19385715 original size:17 final size:18
Alignment explanation
Indices: 19385686--19385720 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
19385676 TGAGGTTAAA
19385686 TTTAAATTTTAATTATTT
1 TTTAAATTTTAATTATTT
19385704 TTTAAA-TTTAATTATTT
1 TTTAAATTTTAATTATTT
19385721 AAAATAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTAAATTTTAATTATTT
Found at i:19387763 original size:22 final size:21
Alignment explanation
Indices: 19387723--19387763 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
19387713 ATAGATTTCA
19387723 ATTTTAATATATAAATTTTTT
1 ATTTTAATATATAAATTTTTT
*
19387744 ATTTTAA-ATATGTAATTTTT
1 ATTTTAATATAT-AAATTTTT
19387764 ATAGTAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (21 bp):
ATTTTAATATATAAATTTTTT
Found at i:19390980 original size:18 final size:18
Alignment explanation
Indices: 19390949--19390997 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
19390939 CCTCTATTGC
**
19390949 ATGTAAACATCCTATAGT
1 ATGTAAACCCCCTATAGT
*
19390967 ATGTAAACCCCCTATGGT
1 ATGTAAACCCCCTATAGT
*
19390985 ATGCGAAACCCCC
1 ATG-TAAACCCCC
19390998 ATTAGTGGCA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
18 18 0.69
19 8 0.31
ACGTcount: A:0.33, C:0.29, G:0.14, T:0.24
Consensus pattern (18 bp):
ATGTAAACCCCCTATAGT
Found at i:19391089 original size:15 final size:15
Alignment explanation
Indices: 19391069--19391126 Score: 53
Period size: 15 Copynumber: 3.8 Consensus size: 15
19391059 GCTCAATATT
19391069 TGTGCGAACCCTAGG
1 TGTGCGAACCCTAGG
* ***
19391084 TGTGCGACCCCTTTTT
1 TGTGCGAACCC-TAGG
* *
19391100 TGTGTGAACCATAGG
1 TGTGCGAACCCTAGG
19391115 TGTGCGAACCCT
1 TGTGCGAACCCT
19391127 TATACGAACA
Statistics
Matches: 30, Mismatches: 12, Indels: 2
0.68 0.27 0.05
Matches are distributed among these distances:
15 21 0.70
16 9 0.30
ACGTcount: A:0.17, C:0.26, G:0.28, T:0.29
Consensus pattern (15 bp):
TGTGCGAACCCTAGG
Found at i:19391109 original size:31 final size:31
Alignment explanation
Indices: 19391067--19391127 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
19391057 GAGCTCAATA
* *
19391067 TTTGTGCGAACCCTAGGTGTGCGACCCCTTT
1 TTTGTGCGAACCATAGGTGTGCGAACCCTTT
*
19391098 TTTGTGTGAACCATAGGTGTGCGAACCCTT
1 TTTGTGCGAACCATAGGTGTGCGAACCCTT
19391128 ATACGAACAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.16, C:0.25, G:0.26, T:0.33
Consensus pattern (31 bp):
TTTGTGCGAACCATAGGTGTGCGAACCCTTT
Found at i:19395741 original size:49 final size:51
Alignment explanation
Indices: 19395610--19395752 Score: 173
Period size: 51 Copynumber: 2.8 Consensus size: 51
19395600 TGAAACACCA
* *
19395610 TTTGTGGACAAGCCACCACTGATTTGAAGATAAACTACCACTAATAACACT
1 TTTGTGGACAAGCCACCACTGATATGAAGATATACTACCACTAATAACACT
* * * * *
19395661 TTTGTGGACAAGCCACCACTGGTATGTAGATATACTATCATTGATAA-A-T
1 TTTGTGGACAAGCCACCACTGATATGAAGATATACTACCACTAATAACACT
* * * *
19395710 TTTGTGGACAAGCCACCACTGATCTGCAGATATATTGCCACTA
1 TTTGTGGACAAGCCACCACTGATATGAAGATATACTACCACTA
19395753 CTCCCACATT
Statistics
Matches: 77, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
49 36 0.47
50 1 0.01
51 40 0.52
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.29
Consensus pattern (51 bp):
TTTGTGGACAAGCCACCACTGATATGAAGATATACTACCACTAATAACACT
Found at i:19405425 original size:46 final size:45
Alignment explanation
Indices: 19405375--19405550 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
19405365 TGTTTGGGCA
19405375 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
19405421 TCCGAACTCGTTGAGTTGAGTTCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
19405468 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
19405514 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
19405551 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:19405530 original size:93 final size:93
Alignment explanation
Indices: 19405371--19405542 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
19405361 AGGATGTTTG
* *
19405371 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
19405436 TTGAGTTCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
19405464 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
19405529 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
19405543 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:19413112 original size:19 final size:19
Alignment explanation
Indices: 19413084--19413125 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
19413074 GTGTGACCTC
*
19413084 TTTTTCCCAAATTTTTATG
1 TTTTTCCCAAAATTTTATG
* *
19413103 TTTTTTCCAAAATTTTCTG
1 TTTTTCCCAAAATTTTATG
19413122 TTTT
1 TTTT
19413126 GTTTCAATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.19, C:0.14, G:0.05, T:0.62
Consensus pattern (19 bp):
TTTTTCCCAAAATTTTATG
Found at i:19414824 original size:16 final size:16
Alignment explanation
Indices: 19414803--19414836 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
19414793 AAAATACCAA
19414803 TAGAATCCACTGAATT
1 TAGAATCCACTGAATT
19414819 TAGAATCCACTGAATT
1 TAGAATCCACTGAATT
19414835 TA
1 TA
19414837 ATGTTAGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (16 bp):
TAGAATCCACTGAATT
Found at i:19416929 original size:49 final size:49
Alignment explanation
Indices: 19416851--19417096 Score: 278
Period size: 49 Copynumber: 5.0 Consensus size: 49
19416841 GTAGCCGAAG
*
19416851 CTATCTGGTACGA-ATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 CTATCTGGTAC-ACATAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * * * *
19416900 TTATCCGGTACACGTAGTAACCTGCACTTAGTACTACACACGTGACCTAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AA
* * * * *
19416950 CCATCTGATACACATAGTAGCCTGCACTTATTACTACACACGTGATCGAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA
* * * **
19417000 GTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATTCGACCAA
1 -CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * *
19417050 CAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
19417097 TCACAATAGC
Statistics
Matches: 161, Mismatches: 32, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
48 1 0.01
49 78 0.48
50 45 0.28
51 37 0.23
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (49 bp):
CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAA
Found at i:19417089 original size:100 final size:99
Alignment explanation
Indices: 19416864--19417096 Score: 317
Period size: 100 Copynumber: 2.3 Consensus size: 99
19416854 TCTGGTACGA
* * * *
19416864 ATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAACCTGCACTT
1 ATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAACCTGCACTT
*
19416929 AGTACTACACACGTGACCTAACCATCTGATACAC
66 AGTACTACACACGTGACCTAACAATCTGATACAC
* * * *
19416963 ATAGTAGCCTGCACTTATTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCAC
1 ATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATAGTAACCTGCAC
* *
19417028 TTAGTACTACACA-TTCGACC-AACAATCTGGTACAC
64 TTAGTACTACACACGT-GACCTAACAATCTGATACAC
*
19417063 GTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 ATAGTAGCCTGCACTTAGTACTACACACGTGACC
19417097 TCACAATAGC
Statistics
Matches: 117, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
99 30 0.26
100 47 0.40
101 40 0.34
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (99 bp):
ATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAACCTGCACTT
AGTACTACACACGTGACCTAACAATCTGATACAC
Found at i:19418879 original size:17 final size:18
Alignment explanation
Indices: 19418836--19418880 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
19418826 TGCAGAAGTT
*
19418836 GAATTCTAATAGCTATAA
1 GAATTCAAATAGCTATAA
*
19418854 GGATT-AAATAGCTAT-A
1 GAATTCAAATAGCTATAA
19418870 GAATTCAAATA
1 GAATTCAAATA
19418881 TAAAGGTCCT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
16 5 0.22
17 14 0.61
18 4 0.17
ACGTcount: A:0.47, C:0.09, G:0.13, T:0.31
Consensus pattern (18 bp):
GAATTCAAATAGCTATAA
Found at i:19425211 original size:47 final size:48
Alignment explanation
Indices: 19425143--19425411 Score: 234
Period size: 47 Copynumber: 5.7 Consensus size: 48
19425133 TTTGTGTGCT
*
19425143 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGTAAGCC
* ** * * *
19425189 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTAAGACG-AGAACT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGTA-AGCC
* * * *
19425237 AGTGTAAGA-CATATCTGGGACAT-GCATCGGC-TACAAAATGT--GTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-CGAGATGTAAGCC
* * * * *
19425281 AGTGTAAGACCATGTCTAGGACATGGCATCAGCATGGATATGTGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGT-A-AGCC
* * * * *
19425331 AGTGTAAGACCATGTCTAGGACATGGCATCGACTTGGTGGATG--AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCG-AGATGTAAGCC
19425378 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA
19425412 CTATACCCTG
Statistics
Matches: 180, Mismatches: 30, Indels: 25
0.77 0.13 0.11
Matches are distributed among these distances:
44 9 0.05
45 13 0.07
46 32 0.18
47 63 0.35
48 23 0.13
50 37 0.21
51 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGTAAGCC
Found at i:19446057 original size:15 final size:13
Alignment explanation
Indices: 19446038--19446080 Score: 50
Period size: 15 Copynumber: 3.0 Consensus size: 13
19446028 GTGATTATAG
19446038 TTTAATTAATTAA
1 TTTAATTAATTAA
19446051 TGATTAATTAAGTTAA
1 T--TTAATTAA-TTAA
19446067 TTTAAATTAATTAA
1 TTT-AATTAATTAA
19446081 GAATAAATCT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
13 1 0.04
14 6 0.23
15 14 0.54
16 5 0.19
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.49
Consensus pattern (13 bp):
TTTAATTAATTAA
Found at i:19446077 original size:30 final size:31
Alignment explanation
Indices: 19446041--19446102 Score: 83
Period size: 30 Copynumber: 2.0 Consensus size: 31
19446031 ATTATAGTTT
* *
19446041 AATTAATTAATG-ATTAAT-TAAGTTAATTTA
1 AATTAATTAA-GAATAAATCTAAGATAATTTA
19446071 AATTAATTAAGAATAAATCTAAGATAATTTA
1 AATTAATTAAGAATAAATCTAAGATAATTTA
19446102 A
1 A
19446103 GTGCTGTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 1 0.04
30 15 0.54
31 12 0.43
ACGTcount: A:0.52, C:0.02, G:0.06, T:0.40
Consensus pattern (31 bp):
AATTAATTAAGAATAAATCTAAGATAATTTA
Found at i:19447981 original size:30 final size:30
Alignment explanation
Indices: 19447946--19448005 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
19447936 TATTTTATTA
*
19447946 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTATTATTATTTTAAAGGCATTTG
* *
19447976 TTAATTTTATTATTATTTTAGAGGTATTTG
1 TTAATTTTATTATTATTTTAAAGGCATTTG
19448006 CTTGTTAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.27, C:0.02, G:0.13, T:0.58
Consensus pattern (30 bp):
TTAATTTTATTATTATTTTAAAGGCATTTG
Found at i:19451411 original size:39 final size:40
Alignment explanation
Indices: 19451322--19451417 Score: 140
Period size: 40 Copynumber: 2.4 Consensus size: 40
19451312 CACCAGACAA
* *
19451322 AAGCTCATAAGAGTTGATCCAACCGAAATATGCCAAACAG
1 AAGCTCATAAGAGCTGATCCAACCGAAACATGCCAAACAG
* *
19451362 AAGCTCATAAGAGCTGGTCCACCCGAAACATGCC-AACAG
1 AAGCTCATAAGAGCTGATCCAACCGAAACATGCCAAACAG
*
19451401 AAGTTCATAAGAGCTGA
1 AAGCTCATAAGAGCTGA
19451418 ATAGAAGCTC
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
39 20 0.40
40 30 0.60
ACGTcount: A:0.40, C:0.24, G:0.20, T:0.17
Consensus pattern (40 bp):
AAGCTCATAAGAGCTGATCCAACCGAAACATGCCAAACAG
Found at i:19451803 original size:22 final size:22
Alignment explanation
Indices: 19451771--19451814 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
19451761 CAAAGTACAA
19451771 GGGCATCTTGGTAATTTTTCAT
1 GGGCATCTTGGTAATTTTTCAT
*
19451793 GGGCATTTTGGTAATTTTTCAT
1 GGGCATCTTGGTAATTTTTCAT
19451815 TCTTCTCGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.11, G:0.23, T:0.48
Consensus pattern (22 bp):
GGGCATCTTGGTAATTTTTCAT
Found at i:19455119 original size:80 final size:80
Alignment explanation
Indices: 19454941--19455193 Score: 376
Period size: 80 Copynumber: 3.2 Consensus size: 80
19454931 CGGATGATAA
* * *
19454941 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAG-CCCGAAGGCA-TT-
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-ACCGGGCTAAGTCCCGAAGGCATTTG
19455002 TGCGAGTTACTATAT-
65 TGCGAGTTACTATATC
19455017 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGT
19455082 GCGAGTTACTATATC
66 GCGAGTTACTATATC
*
19455097 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGA
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGT
*
19455162 GCAAG-TAGCTATATC
66 GCGAGTTA-CTATATC
* *
19455177 C-GGCTAAATTCCGAAGG
1 CGGGCTAAGTCCCGAAGG
19455194 TACTTGGTTT
Statistics
Matches: 164, Mismatches: 7, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
76 44 0.27
77 11 0.07
78 2 0.01
79 31 0.19
80 76 0.46
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGTTACTATATC
Found at i:19455174 original size:40 final size:40
Alignment explanation
Indices: 19454937--19455160 Score: 352
Period size: 40 Copynumber: 5.7 Consensus size: 40
19454927 TATTCGGATG
* *
19454937 ATAA-CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
19454976 A-ATTCCGGGCTAAG-CCCGAAGGCA-TT-TGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
19455013 AT-ATCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
19455052 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
19455092 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
19455132 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
19455161 AGCAAGTAGC
Statistics
Matches: 170, Mismatches: 8, Indels: 13
0.89 0.04 0.07
Matches are distributed among these distances:
36 9 0.05
37 20 0.12
38 5 0.03
39 24 0.14
40 112 0.66
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:19462326 original size:40 final size:40
Alignment explanation
Indices: 19462221--19462476 Score: 387
Period size: 40 Copynumber: 6.5 Consensus size: 40
19462211 CGGATGATAA
* *
19462221 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
19462261 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
19462300 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
19462340 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
19462380 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
19462420 CCGGGCTAAGT-CCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
19462459 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
19462477 TACTTGGTTT
Statistics
Matches: 203, Mismatches: 9, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
38 9 0.04
39 66 0.33
40 128 0.63
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:19462435 original size:119 final size:119
Alignment explanation
Indices: 19462217--19462443 Score: 395
Period size: 119 Copynumber: 1.9 Consensus size: 119
19462207 TATTCGGATG
*
19462217 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
*
19462282 TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
66 TTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
19462336 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGCTAAG-CCCGAAGGC
19462400 ATTTGTGCGAGTTACTATAACCGGGCTAAGT-CCGAAGGCATTTG
64 ATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
19462444 AGCAAGTAGC
Statistics
Matches: 103, Mismatches: 3, Indels: 4
0.94 0.03 0.04
Matches are distributed among these distances:
118 2 0.02
119 62 0.60
120 39 0.38
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
TTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:19462457 original size:119 final size:119
Alignment explanation
Indices: 19462217--19462476 Score: 393
Period size: 119 Copynumber: 2.2 Consensus size: 119
19462207 TATTCGGATG
*
19462217 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
* * *
19462282 TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
66 TTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACT
*
19462336 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGCTAAG-CCCGAAGGC
19462400 ATTTGTGCGAGTTACTATAACCGGGCTAAGT-CCGAAGGCATTTGAGCAAG-TAGCT
64 ATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTA-CT
* * *
19462455 ATATCC-GGCTAAATTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
19462477 TACTTGGTTT
Statistics
Matches: 130, Mismatches: 8, Indels: 7
0.90 0.06 0.05
Matches are distributed among these distances:
118 18 0.14
119 73 0.56
120 39 0.30
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
TTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACT
Found at i:19464603 original size:36 final size:36
Alignment explanation
Indices: 19464562--19464631 Score: 122
Period size: 36 Copynumber: 1.9 Consensus size: 36
19464552 TGAGGGACTA
**
19464562 AAATGTGAAATAAATGAAATGTGTGGACTAGTATTT
1 AAATGTGAAATAAATGAAATGCATGGACTAGTATTT
19464598 AAATGTGAAATAAATGAAATGCATGGACTAGTAT
1 AAATGTGAAATAAATGAAATGCATGGACTAGTAT
19464632 GAGTACTAGG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.44, C:0.04, G:0.21, T:0.30
Consensus pattern (36 bp):
AAATGTGAAATAAATGAAATGCATGGACTAGTATTT
Found at i:19478432 original size:54 final size:54
Alignment explanation
Indices: 19478368--19478499 Score: 237
Period size: 54 Copynumber: 2.4 Consensus size: 54
19478358 TCATAAGGCA
*
19478368 GGATTACCAGTCCAGGCTAAATCCCCCGCAATGTAAACTCATAGGGTGATGTCG
1 GGATTACCAGTCCAGGCTAAATCCCCCACAATGTAAACTCATAGGGTGATGTCG
19478422 GGATTACCAGTCCAGGCTAAATCCCCCACAATGTAAACTCATAGGGTGATGTCG
1 GGATTACCAGTCCAGGCTAAATCCCCCACAATGTAAACTCATAGGGTGATGTCG
* *
19478476 GGATTACCAGTCTAGGCCAAATCC
1 GGATTACCAGTCCAGGCTAAATCC
19478500 TTTGCAGCGA
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 75 1.00
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.22
Consensus pattern (54 bp):
GGATTACCAGTCCAGGCTAAATCCCCCACAATGTAAACTCATAGGGTGATGTCG
Found at i:19488017 original size:26 final size:26
Alignment explanation
Indices: 19487981--19488032 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19487971 CACCACTGAA
* *
19487981 TCGGGGAATCATCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
19488007 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
19488033 CTTTTCATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.21, T:0.15
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:19488109 original size:70 final size:71
Alignment explanation
Indices: 19487993--19488143 Score: 241
Period size: 72 Copynumber: 2.1 Consensus size: 71
19487983 GGGGAATCAT
*
19487993 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTT-CATTTCAAATATACAATGG
1 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTTACATTTCAAAGATACAATGG
19488057 ATATCG
66 ATATCG
* ***
19488063 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTTACATTTCAAAGATACAATG
19488128 GATATCG
65 GATATCG
19488135 CACTTAGCA
1 CACTTAGCA
19488144 CCACCAATGA
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 16 0.22
71 28 0.38
72 30 0.41
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (71 bp):
CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTTACATTTCAAAGATACAATGG
ATATCG
Found at i:19488186 original size:26 final size:26
Alignment explanation
Indices: 19488156--19488206 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19488146 ACCAATGAAC
*
19488156 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
19488182 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
19488207 CTTTCACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:19488246 original size:103 final size:104
Alignment explanation
Indices: 19488062--19488284 Score: 369
Period size: 103 Copynumber: 2.2 Consensus size: 104
19488052 AATGGATATC
19488062 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
19488127 GGATATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATATCGCACATAGCACCACCAATAAACCGGGGAATCA
19488166 GCACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
19488230 GGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGAT-ATCGCACATAGCACCACCAATAAACCGGGGAATCA
**
19488269 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
19488285 TTTATATACA
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 94 0.84
104 18 0.16
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATATCGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:19488646 original size:29 final size:29
Alignment explanation
Indices: 19488613--19488676 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
19488603 TAATCCACCA
19488613 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
19488642 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
19488672 CCCAA
1 CCCAA
19488677 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:19488650 original size:30 final size:30
Alignment explanation
Indices: 19488620--19488676 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
19488610 CCACCCAACT
19488620 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
19488649 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
19488677 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:19495740 original size:104 final size:104
Alignment explanation
Indices: 19495618--19495841 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
19495608 AATGGATATC
19495618 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
19495683 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACCAATAAACCGGGGAATCA
19495722 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
19495787 GGATCACGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
**
19495826 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
19495842 TTTATATACA
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:19496203 original size:29 final size:29
Alignment explanation
Indices: 19496170--19496233 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
19496160 TAATCCACCA
19496170 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
19496199 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
19496229 CCCAA
1 CCCAA
19496234 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:19496207 original size:30 final size:30
Alignment explanation
Indices: 19496177--19496233 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
19496167 CCACCCAACT
19496177 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
19496206 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
19496234 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:19501335 original size:21 final size:21
Alignment explanation
Indices: 19501309--19501359 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
19501299 TTATATGCTC
* *
19501309 AATATGATTTGTGATAAGATA
1 AATATGATCTGTAATAAGATA
*
19501330 AATATGATCTGTAATATGATA
1 AATATGATCTGTAATAAGATA
*
19501351 AGTATGATC
1 AATATGATC
19501360 CGTATTTGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.41, C:0.04, G:0.18, T:0.37
Consensus pattern (21 bp):
AATATGATCTGTAATAAGATA
Found at i:19503538 original size:16 final size:17
Alignment explanation
Indices: 19503499--19503545 Score: 51
Period size: 16 Copynumber: 2.7 Consensus size: 17
19503489 TATTCTTCAA
19503499 AAAATGAATTATTTTTGTT
1 AAAAT-AATT-TTTTTGTT
*
19503518 CAAATAATTTTTTTG-T
1 AAAATAATTTTTTTGTT
*
19503534 AAAATTATTTTT
1 AAAATAATTTTT
19503546 CAAAAAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 11 0.44
17 6 0.24
18 4 0.16
19 4 0.16
ACGTcount: A:0.36, C:0.02, G:0.06, T:0.55
Consensus pattern (17 bp):
AAAATAATTTTTTTGTT
Found at i:19503935 original size:16 final size:16
Alignment explanation
Indices: 19503891--19503938 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
19503881 GAAAGTAGGT
19503891 AGGAAAGAGAAGG-GAA
1 AGGAAA-AGAAGGAGAA
19503907 AGTG-AAA-AAGGAGAA
1 AG-GAAAAGAAGGAGAA
19503922 AGGAAAAGAAGGAGAA
1 AGGAAAAGAAGGAGAA
19503938 A
1 A
19503939 CTTTTGAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
14 5 0.18
15 9 0.32
16 13 0.46
17 1 0.04
ACGTcount: A:0.60, C:0.00, G:0.38, T:0.02
Consensus pattern (16 bp):
AGGAAAAGAAGGAGAA
Found at i:19504959 original size:19 final size:20
Alignment explanation
Indices: 19504934--19504991 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 20
19504924 AAACTTTAAA
*
19504934 ATTTTATTTAAATAATAGTT
1 ATTTTATTTAAATAATAATT
**
19504954 -TTTTATAACAAATAATAATT
1 ATTTTAT-TTAAATAATAATT
19504974 ATTTTAAATTTAAATAAT
1 ATTTT--ATTTAAATAAT
19504992 GTATTTTAAG
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
19 6 0.21
20 10 0.34
21 4 0.14
22 7 0.24
23 2 0.07
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (20 bp):
ATTTTATTTAAATAATAATT
Found at i:19507308 original size:27 final size:30
Alignment explanation
Indices: 19507260--19507322 Score: 78
Period size: 27 Copynumber: 2.2 Consensus size: 30
19507250 TAAGACTAAA
*
19507260 AAGGGGTCTAAAATATTATTTTCTAATTTTT
1 AAGGGGTCT-AAATATTATTTTCTAACTTTT
*
19507291 AAGGGGTCT-AAT-TT-TTTTTTAACTTTT
1 AAGGGGTCTAAATATTATTTTCTAACTTTT
19507318 AAGGG
1 AAGGG
19507323 ACTTTAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 16 0.53
28 2 0.07
29 3 0.10
31 9 0.30
ACGTcount: A:0.29, C:0.06, G:0.17, T:0.48
Consensus pattern (30 bp):
AAGGGGTCTAAATATTATTTTCTAACTTTT
Found at i:19508709 original size:19 final size:19
Alignment explanation
Indices: 19508685--19508723 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
19508675 TCCATCTTTC
19508685 TTACCATGATAATTGAGTT
1 TTACCATGATAATTGAGTT
19508704 TTACCATGATAATTGAGTT
1 TTACCATGATAATTGAGTT
19508723 T
1 T
19508724 AGTTGCTATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.10, G:0.15, T:0.44
Consensus pattern (19 bp):
TTACCATGATAATTGAGTT
Found at i:19517965 original size:23 final size:23
Alignment explanation
Indices: 19517949--19518014 Score: 78
Period size: 23 Copynumber: 2.9 Consensus size: 23
19517939 TTTGCTAAGT
19517949 CTTTGTAGCGAATTTTGTATAGC
1 CTTTGTAGCGAATTTTGTATAGC
* * *
19517972 CTTTGTGGCGTATTTTGTATGGC
1 CTTTGTAGCGAATTTTGTATAGC
* * *
19517995 TTTTGTGGCAAATTTTGTAT
1 CTTTGTAGCGAATTTTGTAT
19518015 TGTCTCATTG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.17, C:0.11, G:0.24, T:0.48
Consensus pattern (23 bp):
CTTTGTAGCGAATTTTGTATAGC
Found at i:19522881 original size:16 final size:16
Alignment explanation
Indices: 19522860--19522890 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
19522850 GGTTGATCCC
19522860 AGTAAGATTTCTACCT
1 AGTAAGATTTCTACCT
19522876 AGTAAGATTTCTACC
1 AGTAAGATTTCTACC
19522891 ATTGTTGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.35
Consensus pattern (16 bp):
AGTAAGATTTCTACCT
Found at i:19523405 original size:241 final size:241
Alignment explanation
Indices: 19522982--19523459 Score: 893
Period size: 241 Copynumber: 2.0 Consensus size: 241
19522972 AGGCGATTTT
*
19522982 CTATGATAGCCACTCCTATGACGAGACTATTGCAAAAAGATGTCAAGTTCGAGTGGACAAAAAAT
1 CTATGATAGCCACTCCTACGACGAGACTATTGCAAAAAGATGTCAAGTTCGAGTGGACAAAAAAT
19523047 GTCAACAAAGTTTTGAGAAGTTGAAAATGTTACTGACGGAGGCACCAGTGCTAGTACAACCTGAA
66 GTCAACAAAGTTTTGAGAAGTTGAAAATGTTACTGACGGAGGCACCAGTGCTAGTACAACCTGAA
* *
19523112 TTAGGGAAGGAATTTACAATTTTCAATGATGCGTCTTTGAATGGATTGGGCTGTGTGCTTATGCA
131 TCAGGGAAGGAATTTACAATTTTCAATGATGCGTCTTTGAATGGATTGGGCTGTATGCTTATGCA
19523177 AGAAGGTAAAGTTGTGGCCTATGCTTCTAGACAGTTAAAGCCACTC
196 AGAAGGTAAAGTTGTGGCCTATGCTTCTAGACAGTTAAAGCCACTC
* *
19523223 CTATGATAGCCACTCCTACGACGAGACTATTGCAAGAAGATGTCAAGTTCGAGTGGACAGAAAAT
1 CTATGATAGCCACTCCTACGACGAGACTATTGCAAAAAGATGTCAAGTTCGAGTGGACAAAAAAT
*
19523288 GTCAACAAAGTTTTGAGAAGTTGAAAATGTTACTGACGGAGGCACCAGTGCTAGTACAACTTGAA
66 GTCAACAAAGTTTTGAGAAGTTGAAAATGTTACTGACGGAGGCACCAGTGCTAGTACAACCTGAA
*
19523353 TCAGGGAAGGAATTTACAATTTTCAATGATGCGTCTTTGAATTGATTGGGCTGTATGCTTATGCA
131 TCAGGGAAGGAATTTACAATTTTCAATGATGCGTCTTTGAATGGATTGGGCTGTATGCTTATGCA
19523418 AGAAGGTAAAGTTGTGGCCTATGCTTCTAGACAGTTAAAGCC
196 AGAAGGTAAAGTTGTGGCCTATGCTTCTAGACAGTTAAAGCC
19523460 TCACGAGAAG
Statistics
Matches: 230, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
241 230 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.27
Consensus pattern (241 bp):
CTATGATAGCCACTCCTACGACGAGACTATTGCAAAAAGATGTCAAGTTCGAGTGGACAAAAAAT
GTCAACAAAGTTTTGAGAAGTTGAAAATGTTACTGACGGAGGCACCAGTGCTAGTACAACCTGAA
TCAGGGAAGGAATTTACAATTTTCAATGATGCGTCTTTGAATGGATTGGGCTGTATGCTTATGCA
AGAAGGTAAAGTTGTGGCCTATGCTTCTAGACAGTTAAAGCCACTC
Found at i:19526596 original size:15 final size:17
Alignment explanation
Indices: 19526566--19526610 Score: 67
Period size: 15 Copynumber: 2.8 Consensus size: 17
19526556 AATATTAAAT
19526566 TTAATATAATATTTATC
1 TTAATATAATATTTATC
19526583 TTAATA-AATA-TTATC
1 TTAATATAATATTTATC
*
19526598 TTAATTTAATATT
1 TTAATATAATATT
19526611 AAAGTGATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 10 0.40
16 8 0.32
17 7 0.28
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAATATAATATTTATC
Found at i:19549394 original size:35 final size:35
Alignment explanation
Indices: 19549348--19549479 Score: 120
Period size: 35 Copynumber: 3.6 Consensus size: 35
19549338 AAATGTGAGT
*
19549348 CCAGCTCTAGTTGGATAAACCGACGGTGTTTGCGC
1 CCAGCGCTAGTTGGATAAACCGACGGTGTTTGCGC
* * * *
19549383 CCAGCGCTAGTTGGATAAACTGACGATATTAAATGTAAGC
1 CCAGCGCTAGTTGGATAAACCGACGGTGTT---TG--CGC
* * *
19549423 CCAGCTCTAGTTGGATAAACCAACGGTGTTTGCAC
1 CCAGCGCTAGTTGGATAAACCGACGGTGTTTGCGC
* **
19549458 CTAGCGCTAGTCAGATAAACCG
1 CCAGCGCTAGTTGGATAAACCG
19549480 GCGATTGTGT
Statistics
Matches: 75, Mismatches: 17, Indels: 10
0.74 0.17 0.10
Matches are distributed among these distances:
35 44 0.59
37 2 0.03
38 2 0.03
40 27 0.36
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.24
Consensus pattern (35 bp):
CCAGCGCTAGTTGGATAAACCGACGGTGTTTGCGC
Found at i:19549410 original size:75 final size:75
Alignment explanation
Indices: 19549300--19549484 Score: 271
Period size: 75 Copynumber: 2.5 Consensus size: 75
19549290 CCACAGGGGA
* * * *
19549300 GTTTGCGCCCAGCGCTAGTCAGATATACCGGCGATATTAAATGTGAGTCCAGCTCTAGTTGGATA
1 GTTTGCGCCCAGCGCTAGTCAGATAAACCGACGATATTAAATGTAAGCCCAGCTCTAGTTGGATA
*
19549365 AACCGACGGT
66 AACCAACGGT
** *
19549375 GTTTGCGCCCAGCGCTAGTTGGATAAACTGACGATATTAAATGTAAGCCCAGCTCTAGTTGGATA
1 GTTTGCGCCCAGCGCTAGTCAGATAAACCGACGATATTAAATGTAAGCCCAGCTCTAGTTGGATA
19549440 AACCAACGGT
66 AACCAACGGT
* * *
19549450 GTTTGCACCTAGCGCTAGTCAGATAAACCGGCGAT
1 GTTTGCGCCCAGCGCTAGTCAGATAAACCGACGAT
19549485 TGTGTGCCTA
Statistics
Matches: 96, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
75 96 1.00
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (75 bp):
GTTTGCGCCCAGCGCTAGTCAGATAAACCGACGATATTAAATGTAAGCCCAGCTCTAGTTGGATA
AACCAACGGT
Found at i:19549436 original size:40 final size:39
Alignment explanation
Indices: 19549306--19549443 Score: 131
Period size: 40 Copynumber: 3.6 Consensus size: 39
19549296 GGGAGTTTGC
* ** * *
19549306 GCCCAGCGCTAGTCAGATATACCGGCGATATTAAATGTGA
1 GCCCAGCTCTAGTTGGATAAACCGACGATATTAAATGT-A
* * * *
19549346 GTCCAGCTCTAGTTGGATAAACCGACGGTGTT---TG-C
1 GCCCAGCTCTAGTTGGATAAACCGACGATATTAAATGTA
* *
19549381 GCCCAGCGCTAGTTGGATAAACTGACGATATTAAATGTAA
1 GCCCAGCTCTAGTTGGATAAACCGACGATATTAAATGT-A
19549421 GCCCAGCTCTAGTTGGATAAACC
1 GCCCAGCTCTAGTTGGATAAACC
19549444 AACGGTGTTT
Statistics
Matches: 76, Mismatches: 17, Indels: 10
0.74 0.17 0.10
Matches are distributed among these distances:
35 27 0.36
37 2 0.03
38 2 0.03
40 45 0.59
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (39 bp):
GCCCAGCTCTAGTTGGATAAACCGACGATATTAAATGTA
Found at i:19552955 original size:30 final size:30
Alignment explanation
Indices: 19552921--19553017 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
19552911 TAAACTAAAA
19552921 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
19552951 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
19552981 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
19553011 TGAGCTA
1 TGAGCTA
19553018 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 42 0.84
31 6 0.12
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:19555202 original size:30 final size:30
Alignment explanation
Indices: 19555131--19555213 Score: 89
Period size: 30 Copynumber: 2.7 Consensus size: 30
19555121 CTTTTGTTTC
* *
19555131 AATTTCTTTTTCATCTTCTTTTTCACTCTCA
1 AATTTCTTTTTCTTC-TCTTTTTCAATCTCA
19555162 AATTTC-TTTTCGTTCTCTTTTTCAATCTC-
1 AATTTCTTTTTC-TTCTCTTTTTCAATCTCA
* *
19555191 ATTTTCTTTTTCATTTTCTTTTT
1 AATTTCTTTTTC-TTCTCTTTTT
19555214 GCTTTTCAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
29 5 0.11
30 32 0.71
31 8 0.18
ACGTcount: A:0.13, C:0.22, G:0.01, T:0.64
Consensus pattern (30 bp):
AATTTCTTTTTCTTCTCTTTTTCAATCTCA
Found at i:19555213 original size:18 final size:18
Alignment explanation
Indices: 19555164--19555219 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
19555154 CACTCTCAAA
* *
19555164 TTTC-TTTTCGTTCTCTT
1 TTTCATTTTCATTTTCTT
* *
19555181 TTTCAATCTCATTTTCTT
1 TTTCATTTTCATTTTCTT
*
19555199 TTTCATTTTCTTTTTGCTT
1 TTTCATTTTCATTTT-CTT
19555218 TT
1 TT
19555220 CAAAGGCTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.07, C:0.20, G:0.04, T:0.70
Consensus pattern (18 bp):
TTTCATTTTCATTTTCTT
Found at i:19555220 original size:12 final size:12
Alignment explanation
Indices: 19555189--19555213 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
19555179 TTTTTCAATC
19555189 TCATTTTCTTTT
1 TCATTTTCTTTT
19555201 TCATTTTCTTTT
1 TCATTTTCTTTT
19555213 T
1 T
19555214 GCTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:19555292 original size:5 final size:5
Alignment explanation
Indices: 19555282--19555338 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
19555272 CTCTTGCCTC
*
19555282 TCTTT TCTTT T-TATT TCATTT TCTTT T-TCT TCTTT TGCTTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
19555329 TCTTT TCTTT
1 TCTTT TCTTT
19555339 GTTTTCTCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 6 0.14
7 5 0.11
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (5 bp):
TCTTT
Found at i:19555322 original size:15 final size:14
Alignment explanation
Indices: 19555282--19555338 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
19555272 CTCTTGCCTC
*
19555282 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-CT
19555297 TCATTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
19555312 TCTTTTGCTTTTTCTTT
1 TCTTTT-CTTTTTC--T
19555329 TCTTTTCTTT
1 TCTTTTCTTT
19555339 GTTTTCTCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
14 4 0.11
15 12 0.32
16 14 0.38
17 7 0.19
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:19555339 original size:21 final size:21
Alignment explanation
Indices: 19555282--19555349 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
19555272 CTCTTGCCTC
* *
19555282 TCTTTTCTTTT-TATTTCATTT
1 TCTTTTCTTTTCT-TTGCTTTT
*
19555303 TCTTTT-TCTTCTTTTGCTTTT
1 TCTTTTCTTTTC-TTTGCTTTT
19555324 TCTTTTCTTTTCTTTG-TTTT
1 TCTTTTCTTTTCTTTGCTTTT
19555344 CTCTTT
1 -TCTTT
19555350 ACAAGAATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
20 7 0.18
21 27 0.69
22 5 0.13
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.76
Consensus pattern (21 bp):
TCTTTTCTTTTCTTTGCTTTT
Found at i:19556313 original size:12 final size:12
Alignment explanation
Indices: 19556268--19556313 Score: 65
Period size: 12 Copynumber: 3.7 Consensus size: 12
19556258 TTCAGATTTT
19556268 TTTTCTTTTCGAAA
1 TTTT-TTTTCG-AA
*
19556282 TTTTTTTTTGAA
1 TTTTTTTTCGAA
19556294 TTTTTTTTCGAA
1 TTTTTTTTCGAA
19556306 TTTTTTTT
1 TTTTTTTT
19556314 TACTTGTATA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
12 21 0.70
13 5 0.17
14 4 0.13
ACGTcount: A:0.15, C:0.07, G:0.07, T:0.72
Consensus pattern (12 bp):
TTTTTTTTCGAA
Found at i:19560023 original size:56 final size:55
Alignment explanation
Indices: 19559898--19560077 Score: 192
Period size: 55 Copynumber: 3.3 Consensus size: 55
19559888 TTTTGAGGGG
* * ** *
19559898 TTTA-GGGGAAAGCAAAATG-AAAAAAGTTTTGAG-GTTTGAAAGAAATAAAAGT
1 TTTAGGGGGAAAGTAAAAGGAAAAAAAGTTTTGAGAGTTTGAGGGAAATAAAAAT
* *
19559950 TTTTGGGGGAAAGTAAAA-GAAAAAAAGTTTTGAGAGTTTGGGGGAAAATAAAAAT
1 TTTAGGGGGAAAGTAAAAGGAAAAAAAGTTTTGAGAGTTTGAGGG-AAATAAAAAT
*
19560005 TTTAAGGGGGAAAGTAAAAGGAAAAATAGTTTTG-GCAGTTTGAGGGAAAT-AAAAT
1 TTT-AGGGGGAAAGTAAAAGGAAAAAAAGTTTTGAG-AGTTTGAGGGAAATAAAAAT
* *
19560060 TTTTGAGAGGAAAGTAAA
1 TTTAG-GGGGAAAGTAAA
19560078 CTTGTAAACT
Statistics
Matches: 109, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
52 4 0.04
53 26 0.24
54 7 0.06
55 31 0.28
56 19 0.17
57 22 0.20
ACGTcount: A:0.46, C:0.01, G:0.28, T:0.26
Consensus pattern (55 bp):
TTTAGGGGGAAAGTAAAAGGAAAAAAAGTTTTGAGAGTTTGAGGGAAATAAAAAT
Found at i:19560072 original size:55 final size:52
Alignment explanation
Indices: 19559901--19560077 Score: 187
Period size: 56 Copynumber: 3.2 Consensus size: 52
19559891 TGAGGGGTTT
* **
19559901 AGGGGAAAGCAAAATGAAAAAAGTTTT-GAGGTTTGAAAGAAATAAAAGTTTTTG
1 AGGGGAAAGTAAAA-GAAAAAAGTTTTGGA-GTTTGAGGGAAATAAAA-TTTTTG
* * *
19559955 -GGGGAAAGTAAAAGAAAAAAAGTTTTGAGAGTTTGGGGGAAAATAAAAATTTTA
1 AGGGGAAAGTAAAAG-AAAAAAGTTTTG-GAGTTTGAGGG-AAATAAAATTTTTG
19560009 AGGGGGAAAGTAAAAGGAAAAATAGTTTTGGCAGTTTGAGGGAAATAAAATTTTTG
1 A-GGGGAAAGTAAAA-GAAAAA-AGTTTTGG-AGTTTGAGGGAAATAAAATTTTTG
*
19560065 AGAGGAAAGTAAA
1 AGGGGAAAGTAAA
19560078 CTTGTAAACT
Statistics
Matches: 104, Mismatches: 10, Indels: 17
0.79 0.08 0.13
Matches are distributed among these distances:
52 1 0.01
53 23 0.22
54 10 0.10
55 21 0.20
56 32 0.31
57 17 0.16
ACGTcount: A:0.46, C:0.01, G:0.28, T:0.24
Consensus pattern (52 bp):
AGGGGAAAGTAAAAGAAAAAAGTTTTGGAGTTTGAGGGAAATAAAATTTTTG
Found at i:19560839 original size:22 final size:20
Alignment explanation
Indices: 19560812--19560855 Score: 52
Period size: 22 Copynumber: 2.1 Consensus size: 20
19560802 TAAGTAAAAT
*
19560812 AATTTTAATCTTTCTCATATTA
1 AATTTTAATCATT-TCA-ATTA
*
19560834 AATTTTTATCATTTCAATTA
1 AATTTTAATCATTTCAATTA
19560854 AA
1 AA
19560856 ATTATATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 3 0.15
22 11 0.55
ACGTcount: A:0.36, C:0.11, G:0.00, T:0.52
Consensus pattern (20 bp):
AATTTTAATCATTTCAATTA
Found at i:19562617 original size:3 final size:3
Alignment explanation
Indices: 19562609--19562648 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
19562599 TATCGAGGTG
19562609 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
19562649 GAGAGCGAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:19565287 original size:20 final size:21
Alignment explanation
Indices: 19565257--19565303 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
19565247 ATTGAGTTAA
*
19565257 TGAATTGAATTTTATTTTTTT
1 TGAATTGAATTTAATTTTTTT
*
19565278 T-AATTTAATTTAATTTTTTT
1 TGAATTGAATTTAATTTTTTT
19565298 TGAATT
1 TGAATT
19565304 AAGTTAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 18 0.78
21 5 0.22
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (21 bp):
TGAATTGAATTTAATTTTTTT
Found at i:19565305 original size:20 final size:20
Alignment explanation
Indices: 19565257--19565310 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
19565247 ATTGAGTTAA
*
19565257 TGAATTGAATTTTATTTTTTT
1 TGAATT-AATTTAATTTTTTT
19565278 T-AATTTAATTTAATTTTTTT
1 TGAA-TTAATTTAATTTTTTT
*
19565298 TGAATTAAGTTAA
1 TGAATTAATTTAA
19565311 ATTAAATTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
20 24 0.83
21 5 0.17
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.61
Consensus pattern (20 bp):
TGAATTAATTTAATTTTTTT
Found at i:19565326 original size:14 final size:14
Alignment explanation
Indices: 19565306--19565344 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
19565296 TTTGAATTAA
19565306 GTTAAATTAAAT-T
1 GTTAAATTAAATAT
19565319 GTTTAAATTAAATAT
1 G-TTAAATTAAATAT
*
19565334 GTCAAATTAAA
1 GTTAAATTAAA
19565345 ATCTTATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 1 0.04
14 20 0.87
15 2 0.09
ACGTcount: A:0.49, C:0.03, G:0.08, T:0.41
Consensus pattern (14 bp):
GTTAAATTAAATAT
Found at i:19565552 original size:26 final size:27
Alignment explanation
Indices: 19565523--19565574 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
19565513 TAACTTTCTT
*
19565523 TATATATTTTAAAATTTAT-TAAATAA
1 TATAAATTTTAAAATTTATATAAATAA
* *
19565549 TATAAATTTTGAAATTTTTATAAATA
1 TATAAATTTTAAAATTTATATAAATA
19565575 TTTTGAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (27 bp):
TATAAATTTTAAAATTTATATAAATAA
Found at i:19565585 original size:19 final size:20
Alignment explanation
Indices: 19565554--19565605 Score: 65
Period size: 19 Copynumber: 2.6 Consensus size: 20
19565544 AATAATATAA
19565554 ATTTTGAAATTTTT-ATAAA-T
1 ATTTTG-AATTTTTGA-AAATT
19565574 ATTTTGAATTTTTGAAAATT
1 ATTTTGAATTTTTGAAAATT
19565594 ATTTT-AATTTTT
1 ATTTTGAATTTTT
19565606 TTTATAATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
19 17 0.57
20 13 0.43
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.60
Consensus pattern (20 bp):
ATTTTGAATTTTTGAAAATT
Found at i:19566870 original size:3 final size:3
Alignment explanation
Indices: 19566862--19566886 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
19566852 CATGCGTTTC
19566862 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
19566887 TCCGTTCCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:19569416 original size:21 final size:20
Alignment explanation
Indices: 19569392--19569443 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
19569382 TTATGCCACA
19569392 TCAGTATTCTTATCCTAAATT
1 TCAGTATT-TTATCCTAAATT
* *
19569413 TCAGGATTTTATCCTGAATT
1 TCAGTATTTTATCCTAAATT
*
19569433 TTAGTATTTTA
1 TCAGTATTTTA
19569444 ATTTGGATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 20 0.74
21 7 0.26
ACGTcount: A:0.27, C:0.13, G:0.10, T:0.50
Consensus pattern (20 bp):
TCAGTATTTTATCCTAAATT
Found at i:19572249 original size:33 final size:33
Alignment explanation
Indices: 19572207--19572273 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
19572197 ACAAAGTTTC
19572207 CACTTGGTTCTGTGGGAAAAATAGAAATATGGA
1 CACTTGGTTCTGTGGGAAAAATAGAAATATGGA
*
19572240 CACTTGGTTCTGTGGGAAAAATAGGAATATGGA
1 CACTTGGTTCTGTGGGAAAAATAGAAATATGGA
19572273 C
1 C
19572274 TATTATCATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.34, C:0.10, G:0.28, T:0.27
Consensus pattern (33 bp):
CACTTGGTTCTGTGGGAAAAATAGAAATATGGA
Found at i:19580039 original size:12 final size:12
Alignment explanation
Indices: 19580022--19580056 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
19580012 CTAAAAGAGT
19580022 AAACAAACTAAA
1 AAACAAACTAAA
*
19580034 AAACAAAACTGAA
1 AAAC-AAACTAAA
19580047 AAACAAACTA
1 AAACAAACTA
19580057 CTTCTACCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.71, C:0.17, G:0.03, T:0.09
Consensus pattern (12 bp):
AAACAAACTAAA
Found at i:19583399 original size:46 final size:46
Alignment explanation
Indices: 19583245--19583461 Score: 169
Period size: 46 Copynumber: 4.7 Consensus size: 46
19583235 TGTGTGAGCT
* ** *
19583245 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC--ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAACAT-A-AGTC
* * * *
19583291 AGTGTAAGACCATGTCTGGGACATGACATCGGCATTGAGAC--GAGTGC
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGGCCTCGAAACATAAGT-C
*
19583338 TAGTGTAAGACATGTCTGGGACATGCATCTGCCTCGAAACATAAGTC
1 -AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAACATAAGTC
** * * **
19583385 AGTGTAAGACATGTCTAAGACATGCATCGG-TTACG--AGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAAACATAAGTC
19583429 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
19583462 ACATACATGC
Statistics
Matches: 137, Mismatches: 22, Indels: 23
0.75 0.12 0.13
Matches are distributed among these distances:
44 15 0.11
45 13 0.09
46 58 0.42
47 32 0.23
48 19 0.14
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAACATAAGTC
Found at i:19593490 original size:11 final size:12
Alignment explanation
Indices: 19593462--19593501 Score: 50
Period size: 11 Copynumber: 3.6 Consensus size: 12
19593452 TTAAGATAAG
19593462 AACAAATTCAAT
1 AACAAATTCAAT
*
19593474 AA-AAATT-GAT
1 AACAAATTCAAT
19593484 AACAAATTCAAT
1 AACAAATTCAAT
19593496 AA-AAAT
1 AACAAAT
19593502 CGATTTTCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
10 4 0.17
11 14 0.58
12 6 0.25
ACGTcount: A:0.62, C:0.10, G:0.03, T:0.25
Consensus pattern (12 bp):
AACAAATTCAAT
Found at i:19598552 original size:5 final size:5
Alignment explanation
Indices: 19598542--19598607 Score: 73
Period size: 5 Copynumber: 12.6 Consensus size: 5
19598532 TATGTCTTTC
19598542 AAAAT AAAAT --AAT AAAAT AGAAAT AAAAAT CAAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT A-AAAT -AAAAT -AAAAT AAAAT AAAAT
19598588 AAAAT AAAAAT AAGAAT AAA
1 AAAAT -AAAAT AA-AAT AAA
19598608 TAACTAAAAA
Statistics
Matches: 54, Mismatches: 1, Indels: 12
0.81 0.01 0.18
Matches are distributed among these distances:
3 3 0.06
5 27 0.50
6 23 0.43
7 1 0.02
ACGTcount: A:0.77, C:0.02, G:0.03, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:19598571 original size:6 final size:6
Alignment explanation
Indices: 19598542--19598617 Score: 61
Period size: 6 Copynumber: 12.7 Consensus size: 6
19598532 TATGTCTTTC
* *
19598542 AAAAT- AAAATAA TAAAATA GAAATA AAAATC AAAAT- AAAAT- AAAAT-
1 AAAATA AAAAT-A -AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
*
19598588 AAAATA AAAATA AGAATA AATAACTA AAAA
1 AAAATA AAAATA AAAATA AA-AA-TA AAAA
19598618 ATAGGAGGAG
Statistics
Matches: 60, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
5 20 0.33
6 26 0.43
7 5 0.08
8 9 0.15
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.18
Consensus pattern (6 bp):
AAAATA
Found at i:19598575 original size:31 final size:32
Alignment explanation
Indices: 19598540--19598600 Score: 97
Period size: 33 Copynumber: 1.9 Consensus size: 32
19598530 GATATGTCTT
*
19598540 TCAAAATAAAAT-AATAAAATAGAAATAAAAA
1 TCAAAATAAAATAAATAAAATAAAAATAAAAA
19598571 TCAAAATAAAATAAAATAAAATAAAAATAA
1 TCAAAATAAAAT-AAATAAAATAAAAATAA
19598601 GAATAAATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 12 0.44
33 15 0.56
ACGTcount: A:0.75, C:0.03, G:0.02, T:0.20
Consensus pattern (32 bp):
TCAAAATAAAATAAATAAAATAAAAATAAAAA
Found at i:19598610 original size:10 final size:10
Alignment explanation
Indices: 19598542--19598607 Score: 73
Period size: 11 Copynumber: 6.3 Consensus size: 10
19598532 TATGTCTTTC
19598542 AAAATAAAAT
1 AAAATAAAAT
19598552 --AATAAAAT
1 AAAATAAAAT
19598560 AGAAATAAAAAT
1 A-AAAT-AAAAT
19598572 CAAAATAAAAT
1 -AAAATAAAAT
19598583 AAAATAAAAT
1 AAAATAAAAT
19598593 AAAAATAAGAAT
1 -AAAATAA-AAT
19598605 AAA
1 AAA
19598608 TAACTAAAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 13
0.79 0.00 0.21
Matches are distributed among these distances:
8 8 0.16
10 10 0.20
11 18 0.37
12 12 0.24
13 1 0.02
ACGTcount: A:0.77, C:0.02, G:0.03, T:0.18
Consensus pattern (10 bp):
AAAATAAAAT
Found at i:19598610 original size:31 final size:30
Alignment explanation
Indices: 19598542--19598607 Score: 87
Period size: 33 Copynumber: 2.1 Consensus size: 30
19598532 TATGTCTTTC
*
19598542 AAAATAAAATAATAAAATAGAAATAAAAAT
1 AAAATAAAATAATAAAATAAAAATAAAAAT
*
19598572 CAAAATAAAATAAAATAAAATAAAAATAAGAAT
1 -AAAATAAAAT--AATAAAATAAAAATAAAAAT
19598605 AAA
1 AAA
19598608 TAACTAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
31 10 0.32
32 3 0.10
33 18 0.58
ACGTcount: A:0.77, C:0.02, G:0.03, T:0.18
Consensus pattern (30 bp):
AAAATAAAATAATAAAATAAAAATAAAAAT
Found at i:19598620 original size:27 final size:27
Alignment explanation
Indices: 19598552--19598607 Score: 87
Period size: 27 Copynumber: 2.0 Consensus size: 27
19598542 AAAATAAAAT
19598552 AATAAAATAGAAATAAAAATCAAAATAA
1 AATAAAATA-AAATAAAAATCAAAATAA
19598580 AATAAAATAAAATAAAAAT-AAGAATAA
1 AATAAAATAAAATAAAAATCAA-AATAA
19598607 A
1 A
19598608 TAACTAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 2 0.07
27 16 0.59
28 9 0.33
ACGTcount: A:0.77, C:0.02, G:0.04, T:0.18
Consensus pattern (27 bp):
AATAAAATAAAATAAAAATCAAAATAA
Found at i:19602742 original size:47 final size:47
Alignment explanation
Indices: 19602590--19602766 Score: 211
Period size: 47 Copynumber: 3.8 Consensus size: 47
19602580 TGTAACCCGC
* * *
19602590 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-GTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACAGTTCACAT
* *
19602636 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ATAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-AGTTCACAT
* * *
19602686 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACAGTTCACAT
19602730 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
19602767 TGTTCAACCA
Statistics
Matches: 110, Mismatches: 12, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
43 3 0.03
44 4 0.04
45 1 0.01
46 36 0.33
47 57 0.52
48 2 0.02
49 2 0.02
50 2 0.02
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACAGTTCACAT
Found at i:19602758 original size:94 final size:93
Alignment explanation
Indices: 19602598--19602768 Score: 288
Period size: 94 Copynumber: 1.8 Consensus size: 93
19602588 GCCCATAAGT
* *
19602598 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGTTCACATCCATAAGTGAACTCAGACTCAACTCAA
19602663 CGAGTTCGGATGCCTAGTTATATCTCAC
66 CGAGTTCGGATGCCTAGTTATATCTCAC
* * *
19602691 GAACTCGGACTCAACTCAACGAGTTCGGACATTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGAC-GTTCACATCCATAAGTGAACTCAGACTCAACTCA
19602756 ACGAGTTCGGATG
65 ACGAGTTCGGATG
19602769 TTCAACCATC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
93 28 0.39
94 44 0.61
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGTTCACATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTATATCTCAC
Found at i:19614536 original size:21 final size:21
Alignment explanation
Indices: 19614510--19614551 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
19614500 AATTAGAAAA
19614510 ATATAAATATAAAATTTATCT
1 ATATAAATATAAAATTTATCT
19614531 ATATAAATATAAAATTTATCT
1 ATATAAATATAAAATTTATCT
19614552 TAAATGTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (21 bp):
ATATAAATATAAAATTTATCT
Found at i:19621027 original size:15 final size:17
Alignment explanation
Indices: 19621002--19621035 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
19620992 GAGCATCAGG
19621002 TTTTACCAGTGCT-ATA
1 TTTTACCAGTGCTGATA
19621018 TTTT-CCAGTGCTGATA
1 TTTTACCAGTGCTGATA
19621034 TT
1 TT
19621036 AGAATAGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.21, C:0.18, G:0.15, T:0.47
Consensus pattern (17 bp):
TTTTACCAGTGCTGATA
Found at i:19621304 original size:22 final size:21
Alignment explanation
Indices: 19621264--19621304 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
19621254 TGCTAGACCC
*
19621264 AGGGGCACACGCTTATGTGGG
1 AGGGGCACACGCTCATGTGGG
*
19621285 AGGGGCAACACGCTCGTGTG
1 AGGGGC-ACACGCTCATGTG
19621305 ACCAATTCGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.20, C:0.22, G:0.41, T:0.17
Consensus pattern (21 bp):
AGGGGCACACGCTCATGTGGG
Found at i:19637586 original size:68 final size:68
Alignment explanation
Indices: 19637471--19637963 Score: 396
Period size: 68 Copynumber: 7.3 Consensus size: 68
19637461 ATAATCGACT
** * *
19637471 TATGGTCTTATGCCTTGTAACCCCATGTTTAATATCCT-A-GTAGACTCTATTGGTTGTTGTAGT
1 TATGGTCTTACACCTTGTAACCCCATGTTTAATGTCCTGACG-A-ACTCTATTGGTTGTTATAGT
*
19637534 CAAGC
64 TAAGC
* * * * * * * * *
19637539 TATGGTCTTACACCTTATAACCCTATATTTAATATCCTGACGAACTCTATTGCTTGCTGTAATTG
1 TATGGTCTTACACCTTGTAACCCCATGTTTAATGTCCTGACGAACTCTATTGGTTGTTATAGTTA
19637604 AGC
66 AGC
* * * * * *
19637607 TATGGTTTTACATCTTGTAACCCCATGTTTAATGTCATGACGGACTCTATTGGTTGCTATAGTTG
1 TATGGTCTTACACCTTGTAACCCCATGTTTAATGTCCTGACGAACTCTATTGGTTGTTATAGTTA
19637672 AGC
66 AGC
* * * * * *
19637675 TATGGTCTTAAACCTTGTAAACCCATATTGAATGTCCT-AGCG-ACTATATTGGTTG-TCTAG-T
1 TATGGTCTTACACCTTGTAACCCCATGTTTAATGTCCTGA-CGAACTCTATTGGTTGTTATAGTT
**
19637736 AGATT
65 A-AGC
* * * * * *
19637741 TATGGTCTTACACATTTTAACCCCATGTTTAATGTCCTGGCGGACTCTATTGGTTGTCACAGTTA
1 TATGGTCTTACACCTTGTAACCCCATGTTTAATGTCCTGACGAACTCTATTGGTTGTTATAGTTA
19637806 AGC
66 AGC
* * * * *
19637809 AATGGTCTTATACCTTGTAAACCCATATTGAATGTCCT-A-GCAGACTCTATTGGTTGTCTAGTA
1 TATGGTCTTACACCTTGTAACCCCATGTTTAATGTCCTGACG-A-ACTCTATTGGTTGT-TA-TA
*
19637872 GAT-A--
62 GTTAAGC
* * * * * *
19637876 TATGGTCTTACACATTTTAACCCCATGTTTAATGTCCTGGCGGACTCTATTGGTTTGTCATAGTC
1 TATGGTCTTACACCTTGTAACCCCATGTTTAATGTCCTGACGAACTCTATTGG-TTGTTATAGTT
19637941 AAGC
65 AAGC
* *
19637945 TATGGTCTTAAACATTGTA
1 TATGGTCTTACACCTTGTA
19637964 CCTCTTTTTA
Statistics
Matches: 335, Mismatches: 72, Indels: 35
0.76 0.16 0.08
Matches are distributed among these distances:
65 1 0.00
66 43 0.13
67 68 0.20
68 195 0.58
69 24 0.07
70 4 0.01
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (68 bp):
TATGGTCTTACACCTTGTAACCCCATGTTTAATGTCCTGACGAACTCTATTGGTTGTTATAGTTA
AGC
Found at i:19637951 original size:270 final size:270
Alignment explanation
Indices: 19637470--19637963 Score: 622
Period size: 270 Copynumber: 1.8 Consensus size: 270
19637460 CATAATCGAC
** * * ***
19637470 TTATGGTCTTATGCCTTGTAACCCCATGTTTAATATCCTAGTAGACTCTATTGGTTGTTGTAGTC
1 TTATGGTCTTACACATTGTAACCCCATGTTTAATATCCTAGCAGACTCTATTGGTTGTCACAGTC
* * *
19637535 AAGCTATGGTCTTACACCTTATAACCCTATATTTAATATCCTGACGAACTCTATTGCTTGCTGTA
66 AAGCAATGGTCTTACACCTTATAACCCTATATTGAATATCCTGACGAACTCTATTGCTTGCTCTA
* * *
19637600 ATTGAGCTATGGTTTTACATCTTGTAACCCCATGTTTAATGTCATGACGGACTCTATTGGTTGCT
131 ATAGAGATATGGTCTTACATCTTGTAACCCCATGTTTAATGTCATGACGGACTCTATTGGTTGCT
** *
19637665 ATAGTTGAGCTATGGTCTTAAACCTTGTAAACCCATATTGAATGTCCTAGCGACTATATTGGTTG
196 ATAGTCAAGCTATGGTCTTAAACATTGTAAACCCATATTGAATGTCCTAGCGACTATATTGGTTG
19637730 TCTAGTAGAT
261 TCTAGTAGAT
* * * * *
19637740 TTATGGTCTTACACATTTTAACCCCATGTTTAATGTCCTGGCGGACTCTATTGGTTGTCACAGTT
1 TTATGGTCTTACACATTGTAACCCCATGTTTAATATCCTAGCAGACTCTATTGGTTGTCACAGTC
* * * *
19637805 AAGCAATGGTCTTATACCTTGTAAACCC-ATATTGAATGTCCT-A-GCAGACTCTATTGGTTG-T
66 AAGCAATGGTCTTACACCTTAT-AACCCTATATTGAATATCCTGACG-A-ACTCTATTGCTTGCT
* * * * *
19637866 CTAGTAGATATATGGTCTTACA-CATTTTAACCCCATGTTTAATGTCCTGGCGGACTCTATTGGT
128 CTAATAGAGATATGGTCTTACATC-TTGTAACCCCATGTTTAATGTCATGACGGACTCTATTGG-
19637930 TTG-TCATAGTCAAGCTATGGTCTTAAACATTGTA
191 TTGCT-ATAGTCAAGCTATGGTCTTAAACATTGTA
19637964 CCTCTTTTTA
Statistics
Matches: 188, Mismatches: 30, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
268 2 0.01
269 56 0.30
270 125 0.66
271 5 0.03
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.38
Consensus pattern (270 bp):
TTATGGTCTTACACATTGTAACCCCATGTTTAATATCCTAGCAGACTCTATTGGTTGTCACAGTC
AAGCAATGGTCTTACACCTTATAACCCTATATTGAATATCCTGACGAACTCTATTGCTTGCTCTA
ATAGAGATATGGTCTTACATCTTGTAACCCCATGTTTAATGTCATGACGGACTCTATTGGTTGCT
ATAGTCAAGCTATGGTCTTAAACATTGTAAACCCATATTGAATGTCCTAGCGACTATATTGGTTG
TCTAGTAGAT
Found at i:19644512 original size:40 final size:40
Alignment explanation
Indices: 19644457--19644614 Score: 262
Period size: 40 Copynumber: 4.0 Consensus size: 40
19644447 TGGAAAAAAA
*
19644457 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
19644497 TATAACCGGGTTAAGTCCCGGAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
19644537 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* * *
19644577 TATAACTGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
19644615 GTTACATCCG
Statistics
Matches: 112, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 112 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:19644638 original size:80 final size:80
Alignment explanation
Indices: 19644472--19644645 Score: 213
Period size: 80 Copynumber: 2.2 Consensus size: 80
19644462 CCGGGTTAAG
* *
19644472 TCCCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGGAGGCATTCGTGCGGGTTAT
1 TCCCGAAGGCATTTGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* * ** *
19644537 TATAACCGGGTTAAG
66 TACAACCGAGCCAAA
* * * * *
19644552 TCCCGAAGGCATTTGTGCGGGTTATTATAACTGGGTTAAGTCCCGAAGGCATTTGTGCTGGTTGT
1 TCCCGAAGGCATTTGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
19644617 TACATCCGAGCCAAA
66 TACAACCGAGCCAAA
* *
19644632 TTCCGAAGGTATTT
1 TCCCGAAGGCATTT
19644646 ATGTTTGGAA
Statistics
Matches: 79, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
80 79 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (80 bp):
TCCCGAAGGCATTTGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
TACAACCGAGCCAAA
Found at i:19652014 original size:43 final size:43
Alignment explanation
Indices: 19651959--19652080 Score: 131
Period size: 43 Copynumber: 2.8 Consensus size: 43
19651949 TAACGAGTCG
* * * *
19651959 TGATTATATGTAAAACCATGTCTGGGAAATTGGCATC-AT-AT
1 TGATTATGTGTAAGACCATGTCTGGGACATTGGCATCGATAAA
* * * *
19652000 TGCAATTATGTGTAAGACTATGTTTGGGACATTAGCATCGTTAAA
1 TG--ATTATGTGTAAGACCATGTCTGGGACATTGGCATCGATAAA
*
19652045 TGATTTTGTGTAAGACCATGTCTGGGACATTGGCAT
1 TGATTATGTGTAAGACCATGTCTGGGACATTGGCAT
19652081 TAATATGTGA
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
41 2 0.03
43 59 0.91
44 1 0.02
45 3 0.05
ACGTcount: A:0.30, C:0.12, G:0.23, T:0.35
Consensus pattern (43 bp):
TGATTATGTGTAAGACCATGTCTGGGACATTGGCATCGATAAA
Done.