Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 68 of 250
Found at i:20893778 original size:43 final size:43
Alignment explanation
Indices: 20893729--20893814 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
20893719 GAAAATTGAC
20893729 CCATTTTTTATATTTATAGAAATAAACCCTTAACCGAAATCAT
1 CCATTTTTTATATTTATAGAAATAAACCCTTAACCGAAATCAT
20893772 CCATTTTTTATATTTATAGAAATAAACCCTTAACCGAAATCAT
1 CCATTTTTTATATTTATAGAAATAAACCCTTAACCGAAATCAT
20893815 ACTTGTGTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.37
Consensus pattern (43 bp):
CCATTTTTTATATTTATAGAAATAAACCCTTAACCGAAATCAT
Found at i:20895191 original size:20 final size:18
Alignment explanation
Indices: 20895161--20895203 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
20895151 TTTGTAAAGT
*
20895161 TTGTAAAATAAGTTGTAAA
1 TTGTGAAATAA-TTGTAAA
20895180 TGTGTGAAATAATTG-AAA
1 T-TGTGAAATAATTGTAAA
20895198 TTGTGA
1 TTGTGA
20895204 GTTGCTATAG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 5 0.23
18 4 0.18
19 4 0.18
20 9 0.41
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.37
Consensus pattern (18 bp):
TTGTGAAATAATTGTAAA
Found at i:20896109 original size:49 final size:49
Alignment explanation
Indices: 20895958--20896176 Score: 159
Period size: 49 Copynumber: 4.6 Consensus size: 49
20895948 GAGAGCTAGC
* * * * * * *
20895958 GTAAGACATGTCTGGGACAT-GCA-CTGGCCTCGAGATATAAAATCTAGT
1 GTAAGACCTGTCTGGGACATGGCATC-GACCTCGATAGATGAAAGCCAGT
* * * * * *
20896006 GTAAGACCTATCTGGGACATGGCATCG-GCTTG--ACATG--TGTCAGT
1 GTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCCAGT
* * *
20896050 ATAAGACCTGTCTGGGGCAGGGCATCGACAC-CGATAGATGAGAA-CCAGT
1 GTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGA-AAGCCAGT
* * * *
20896099 GTAAGACCTGTCTGGGACATGCCATAGACCTCGATATATGAAAGTCAGT
1 GTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCCAGT
*
20896148 GTAAGACCTGTCTTGGACATGGCATCGAC
1 GTAAGACCTGTCTGGGACATGGCATCGAC
20896177 TTAGATATGT
Statistics
Matches: 131, Mismatches: 29, Indels: 21
0.72 0.16 0.12
Matches are distributed among these distances:
44 26 0.20
45 1 0.01
46 4 0.03
47 4 0.03
48 24 0.18
49 71 0.54
50 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.23
Consensus pattern (49 bp):
GTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCCAGT
Found at i:20896184 original size:49 final size:47
Alignment explanation
Indices: 20896003--20896222 Score: 176
Period size: 49 Copynumber: 4.6 Consensus size: 47
20895993 TATAAAATCT
* * * * *
20896003 AGTGTAAGACCTATCTGGGACATGGCATCGGCTT-G--ACATGTGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTCGATATATGAGCC
* * * ** *
20896047 AGTATAAGACCTGTCTGGGGCAGGGCATCGACACCGATAGATGAGAACC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTCGATATATGAG--CC
* * * *
20896096 AGTGTAAGACCTGTCTGGGACATGCCATAGACCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTCGATATATG--AGCC
* * *
20896145 AGTGTAAGACCTGTCTTGGACATGGCATCGACTTAGATATGTGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTCGATATATGAGCC
* * * *
20896192 AGTGTAAGGCCTTGTTTGGAACATGACATCG
1 AGTGTAAGACC-TGTCTGGGACATGGCATCG
20896223 GCATCATGCC
Statistics
Matches: 137, Mismatches: 31, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
44 27 0.20
45 1 0.01
47 18 0.13
48 15 0.11
49 74 0.54
51 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACTTCGATATATGAGCC
Found at i:20902328 original size:92 final size:93
Alignment explanation
Indices: 20902216--20902386 Score: 301
Period size: 92 Copynumber: 1.8 Consensus size: 93
20902206 CGCCCATAAG
*
20902216 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTC-GACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
20902279 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
20902308 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
20902373 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
20902387 TCAACCATCC
Statistics
Matches: 75, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
91 2 0.03
92 48 0.64
93 25 0.33
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:20902360 original size:46 final size:46
Alignment explanation
Indices: 20902209--20902383 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
20902199 TGTAACCCGC
* *
20902209 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
20902255 CCATAAGTGAACTC-GACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
20902304 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
20902347 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
20902384 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 4 0.04
45 20 0.18
46 48 0.44
47 24 0.22
48 2 0.02
49 3 0.03
50 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:20909883 original size:92 final size:93
Alignment explanation
Indices: 20909771--20909941 Score: 301
Period size: 92 Copynumber: 1.8 Consensus size: 93
20909761 CGCCCATAAG
*
20909771 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACT-GGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
20909834 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
20909863 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
20909928 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
20909942 TCAACCATCC
Statistics
Matches: 75, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
91 2 0.03
92 47 0.63
93 26 0.35
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:20909931 original size:46 final size:46
Alignment explanation
Indices: 20909764--20909938 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
20909754 TGTAACCCGC
* *
20909764 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
20909810 CCATAAGTGAACT-GGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
20909859 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
20909902 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
20909939 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 4 0.04
45 21 0.19
46 46 0.42
47 25 0.23
48 2 0.02
49 3 0.03
50 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:20910390 original size:30 final size:30
Alignment explanation
Indices: 20910355--20910415 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
20910345 TCCTTAACTC
20910355 AAATTTTGGCAAAATTACAATTTTACCCCT
1 AAATTTTGGCAAAATTACAATTTTACCCCT
* * * * *
20910385 AAATTTTTGCATATTTACATTTTTGCCCCT
1 AAATTTTGGCAAAATTACAATTTTACCCCT
20910415 A
1 A
20910416 GGCTCGGGAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.43
Consensus pattern (30 bp):
AAATTTTGGCAAAATTACAATTTTACCCCT
Found at i:20919263 original size:9 final size:9
Alignment explanation
Indices: 20919236--20919276 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
20919226 GACACCTGAA
20919236 ATTAAACAC
1 ATTAAACAC
20919245 ATTTAAACAC
1 A-TTAAACAC
*
20919255 ATAAAACAC
1 ATTAAACAC
20919264 ATTAAACAC
1 ATTAAACAC
20919273 -TTAA
1 ATTAA
20919277 CTTAAATAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
8 4 0.14
9 16 0.55
10 9 0.31
ACGTcount: A:0.56, C:0.20, G:0.00, T:0.24
Consensus pattern (9 bp):
ATTAAACAC
Found at i:20919360 original size:19 final size:19
Alignment explanation
Indices: 20919333--20919425 Score: 86
Period size: 19 Copynumber: 5.1 Consensus size: 19
20919323 TTATTCTAGC
20919333 AACTAAATTAACTAAGATG
1 AACTAAATTAACTAAGATG
* *
20919352 AACTTAATTAACTAACATG
1 AACTAAATTAACTAAGATG
* * * *
20919371 AA-T-AATTTATTCCAG--C
1 AACTAAATTAACT-AAGATG
20919387 AACTAAATTAACTAAGATG
1 AACTAAATTAACTAAGATG
*
20919406 AACTCAATTAACTAAGATG
1 AACTAAATTAACTAAGATG
20919425 A
1 A
20919426 GTAATTTATT
Statistics
Matches: 57, Mismatches: 12, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
16 2 0.04
17 9 0.16
18 8 0.14
19 38 0.67
ACGTcount: A:0.48, C:0.14, G:0.09, T:0.29
Consensus pattern (19 bp):
AACTAAATTAACTAAGATG
Found at i:20919381 original size:54 final size:54
Alignment explanation
Indices: 20919323--20919451 Score: 213
Period size: 54 Copynumber: 2.4 Consensus size: 54
20919313 CATCATTAAA
* *
20919323 TTATTCTAGCAACTAAATTAACTAAGATGAACTTAATTAACTAACATGAATAAT
1 TTATTCCAGCAACTAAATTAACTAAGATGAACTCAATTAACTAACATGAATAAT
* *
20919377 TTATTCCAGCAACTAAATTAACTAAGATGAACTCAATTAACTAAGATGAGTAAT
1 TTATTCCAGCAACTAAATTAACTAAGATGAACTCAATTAACTAACATGAATAAT
*
20919431 TTATTCCAGCAACTTAATTAA
1 TTATTCCAGCAACTAAATTAA
20919452 TTAAACTAAG
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 70 1.00
ACGTcount: A:0.44, C:0.15, G:0.09, T:0.33
Consensus pattern (54 bp):
TTATTCCAGCAACTAAATTAACTAAGATGAACTCAATTAACTAACATGAATAAT
Found at i:20924469 original size:28 final size:29
Alignment explanation
Indices: 20924415--20924469 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
20924405 TATGGATCAA
* *
20924415 GAAAAATGAAGTTTGGATTTAGATCGAGG
1 GAAAAATAAAGTTTGGATCTAGATCGAGG
20924444 GAAAAATAAAGTATTGGA-CTA-ATCGA
1 GAAAAATAAAGT-TTGGATCTAGATCGA
20924470 TCCAGTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 5 0.22
29 13 0.57
30 5 0.22
ACGTcount: A:0.44, C:0.05, G:0.25, T:0.25
Consensus pattern (29 bp):
GAAAAATAAAGTTTGGATCTAGATCGAGG
Found at i:20930322 original size:42 final size:42
Alignment explanation
Indices: 20930222--20930369 Score: 138
Period size: 43 Copynumber: 3.5 Consensus size: 42
20930212 CAATGTCGAC
* * * * *
20930222 GTCCCAGACGTGGTCTTATATGTAATTCAATACTGATACCTCT
1 GTCCCAGACATGGTCTTACATGTAAATCAATAC-GATGCCTAT
* *
20930265 GTCCCAGACAGGGTCTTACATG-AAATCAAATACGATGCCAAT
1 GTCCCAGACATGGTCTTACATGTAAATC-AATACGATGCCTAT
* * * *
20930307 GTCCCAGACATGGTCTTATACGTAAATCTCAAT-CGAGGCCTGT
1 GTCCCAGACATGGTCTTACATGTAAA--TCAATACGATGCCTAT
*
20930350 GTCCCAGACACGGTCTTACA
1 GTCCCAGACATGGTCTTACA
20930370 CGATATCTCA
Statistics
Matches: 86, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
42 29 0.34
43 52 0.60
44 3 0.03
45 2 0.02
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACATGTAAATCAATACGATGCCTAT
Found at i:20934931 original size:13 final size:13
Alignment explanation
Indices: 20934913--20934938 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
20934903 GGTATTTGTT
20934913 TTAACTAAACTAA
1 TTAACTAAACTAA
20934926 TTAACTAAACTAA
1 TTAACTAAACTAA
20934939 GAATGCACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACTAAACTAA
Found at i:20943621 original size:13 final size:13
Alignment explanation
Indices: 20943603--20943628 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
20943593 GGTATTTGTT
20943603 TTAACTAAACTAA
1 TTAACTAAACTAA
20943616 TTAACTAAACTAA
1 TTAACTAAACTAA
20943629 GAATGCACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACTAAACTAA
Found at i:20947675 original size:28 final size:28
Alignment explanation
Indices: 20947643--20947726 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
20947633 AACTGTGATC
20947643 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* *
20947671 ACGTGTATTAG-A-T-GGTG-AGG-T-C-
1 ACGTGT-GTAGTACTAAGTGCAGGCTACT
*
20947693 ACGTGTGTAGTACTAAGTGCAGGCAACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
20947721 ACGTGT
1 ACGTGT
20947727 ACCAGACTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 16
0.67 0.08 0.25
Matches are distributed among these distances:
21 3 0.07
22 7 0.16
23 2 0.05
24 4 0.09
25 6 0.14
26 3 0.07
27 2 0.05
28 13 0.30
29 3 0.07
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.29
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:20947716 original size:50 final size:50
Alignment explanation
Indices: 20947583--20947770 Score: 204
Period size: 50 Copynumber: 3.8 Consensus size: 50
20947573 AATGATCTAT
* * * *
20947583 TGTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGAAAAC
1 TGTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA--T-AAGAC
* *
20947636 TGTGA--TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-
1 TGTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGAC
* * **
20947683 TGGTGAGGTCACGTGTGTAGTACTAAGTGCAGGCAACTACGTGTACCAGAC
1 T-GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGAC
* *
20947734 TGT-TGGTCACATGTGTAGTACTAAGTTCAGGCTACTA
1 TGTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
20947771 TACGTACCAT
Statistics
Matches: 118, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
47 1 0.01
48 6 0.05
49 31 0.26
50 41 0.35
51 34 0.29
53 5 0.04
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.29
Consensus pattern (50 bp):
TGTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGAC
Found at i:20947775 original size:101 final size:99
Alignment explanation
Indices: 20947584--20947770 Score: 259
Period size: 101 Copynumber: 1.9 Consensus size: 99
20947574 ATGATCTATT
* * * *
20947584 GTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGAAAACTGTGATCACGTGT
1 GTGAGGTCACATGTGTAGTACTAAGTGCAGGCAACTACGCGTACC--AAAACTGTGATCACATGT
20947649 GTAGTACTAAGTGCAGGCTACTACGTGTATTAGATG
64 GTAGTACTAAGTGCAGGCTACTACGTGTATTAGATG
* * * *
20947685 GTGAGGTCACGTGTGTAGTACTAAGTGCAGGCAACTACGTGTACC-AGACTGTTGGTCACATGTG
1 GTGAGGTCACATGTGTAGTACTAAGTGCAGGCAACTACGCGTACCAAAACTG-TGATCACATGTG
*
20947749 TAGTACTAAGTTCAGGCTACTA
65 TAGTACTAAGTGCAGGCTACTA
20947771 TACGTACCAT
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
98 5 0.07
99 31 0.41
101 40 0.53
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (99 bp):
GTGAGGTCACATGTGTAGTACTAAGTGCAGGCAACTACGCGTACCAAAACTGTGATCACATGTGT
AGTACTAAGTGCAGGCTACTACGTGTATTAGATG
Found at i:20949682 original size:49 final size:51
Alignment explanation
Indices: 20949563--20949702 Score: 176
Period size: 49 Copynumber: 2.8 Consensus size: 51
20949553 TTGTGAGGTT
* * *
20949563 GCATGTGTAGTACTGACTGCAGGCTACTATGCGTACCCGAAAATTGTGATC
1 GCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAAATTGTGATC
* * * * ***
20949614 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTG-G-TC
1 GCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAAATTGTGATC
20949663 GCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
20949703 TAGCTTCGGC
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
49 38 0.51
50 1 0.01
51 36 0.48
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (51 bp):
GCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAAATTGTGATC
Found at i:20953414 original size:51 final size:51
Alignment explanation
Indices: 20953350--20953484 Score: 186
Period size: 50 Copynumber: 2.7 Consensus size: 51
20953340 TGAGGTTGCA
*
20953350 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGAAAATTGTGA-TCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCGAAAATGGTGAGTCACG
** *
20953401 TGTGTAGTACTAAGTGCAGGCTACTATGTGTA--TTAGATGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGAAAATGGTGA-GTCACG
*
20953451 TGTGTAGTACTAAGTACAGGCTACTATGTGTACC
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACC
20953485 AAATAGCTTC
Statistics
Matches: 75, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
48 7 0.09
50 36 0.48
51 32 0.43
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGAAAATGGTGAGTCACG
Found at i:20953431 original size:26 final size:26
Alignment explanation
Indices: 20953401--20953482 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
20953391 TGTGATCACG
20953401 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
* * * *
20953427 TGTGTATTA-GATGGTG-AGG-TCAC-G
1 TGTGTAGTACTA-AGTGCAGGCT-ACTA
*
20953451 TGTGTAGTACTAAGTACAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
20953477 TGTGTA
1 TGTGTA
20953483 CCAAATAGCT
Statistics
Matches: 41, Mismatches: 9, Indels: 12
0.66 0.15 0.19
Matches are distributed among these distances:
24 11 0.27
25 12 0.29
26 18 0.44
ACGTcount: A:0.26, C:0.12, G:0.29, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTAAGTGCAGGCTACTA
Found at i:20957581 original size:49 final size:48
Alignment explanation
Indices: 20957506--20957683 Score: 195
Period size: 49 Copynumber: 3.7 Consensus size: 48
20957496 AGGGTATAAT
* * *
20957506 GCCGATGCCATGTCCTAGACATGGTCTTACACTGACTATCGTCATCGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCT-TCGTCATCGAG
* * *
20957555 GCTGATGCCATGTCCCAAACATGGTCTTACATTGGCTCTCG-CATATTC-AT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCT-TCGTC--A-TCGAG
* *
20957605 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACTTCA-CGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTT-CGTCATCGAG
20957653 GCCGATG-CATGTCCCAAACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACT
20957684 AGCTCACAGT
Statistics
Matches: 110, Mismatches: 13, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
46 10 0.09
47 14 0.13
48 9 0.08
49 37 0.34
50 37 0.34
51 3 0.03
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTTCGTCATCGAG
Found at i:20957939 original size:6 final size:6
Alignment explanation
Indices: 20957928--20957979 Score: 104
Period size: 6 Copynumber: 8.7 Consensus size: 6
20957918 GCAATTCCTT
20957928 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
20957976 AAAA
1 AAAA
20957980 GAGGGCTTCC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:20961907 original size:47 final size:47
Alignment explanation
Indices: 20961838--20961929 Score: 148
Period size: 47 Copynumber: 2.0 Consensus size: 47
20961828 CTTTTGAAAG
* *
20961838 CTTACTTTGCATGTGTTTTCAATTATTTTATAGATATCGTAGCTAAA
1 CTTACTTTGCACGTGTTTTCAATTATTTTATAGATATCATAGCTAAA
* *
20961885 CTTACTTTGCGCGTGTTTTCAATTGTTTTATAGATATCATAGCTA
1 CTTACTTTGCACGTGTTTTCAATTATTTTATAGATATCATAGCTA
20961930 TCGGGAGCTT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.25, C:0.14, G:0.14, T:0.47
Consensus pattern (47 bp):
CTTACTTTGCACGTGTTTTCAATTATTTTATAGATATCATAGCTAAA
Found at i:20980029 original size:46 final size:46
Alignment explanation
Indices: 20979970--20980145 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 46
20979960 TGGCTGAGCA
* * *
20979970 TCCGAGCTTGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
20980016 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
20980061 CATCCGAACTCGATGAGTTGAGTCCGAGTTCACCTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
20980109 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
20980146 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 20, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 58 0.57
47 27 0.27
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:20980126 original size:93 final size:93
Alignment explanation
Indices: 20979967--20980137 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
20979957 GGATGGCTGA
* * * * * * * *
20979967 GCATCCGAGCTTGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGATGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
20980032 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
20980060 GCATCCGAACTCGATGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGATGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
20980125 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
20980138 ACTTATGGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGATGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:20983024 original size:23 final size:24
Alignment explanation
Indices: 20982989--20983050 Score: 81
Period size: 23 Copynumber: 2.6 Consensus size: 24
20982979 CAAATGATCC
* *
20982989 AATTATTTTATTATTACCATT-TT
1 AATTAATTAATTATTACCATTATT
*
20983012 AATTAATTAATTATTACTATTATT
1 AATTAATTAATTATTACCATTATT
*
20983036 AATTAATAAATTATT
1 AATTAATTAATTATT
20983051 TTATCCTATT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 18 0.53
24 16 0.47
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (24 bp):
AATTAATTAATTATTACCATTATT
Found at i:20983054 original size:20 final size:19
Alignment explanation
Indices: 20983007--20983054 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
20982997 TATTATTACC
*
20983007 ATTTTAATTAATTAATTATT
1 ATTTT-ATTAATTAATAATT
*
20983027 ACTATTATTAATTAATAAATT
1 A-TTTTATTAATTAAT-AATT
20983048 ATTTTAT
1 ATTTTAT
20983055 CCTATTTTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (19 bp):
ATTTTATTAATTAATAATT
Found at i:20985074 original size:20 final size:20
Alignment explanation
Indices: 20985049--20985089 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
20985039 CAAATGAGTA
20985049 AGTCTATTATCA-TCATATGT
1 AGTCTATTATCAGT-ATATGT
20985069 AGTCTATTATCAGTATATGT
1 AGTCTATTATCAGTATATGT
20985089 A
1 A
20985090 TTTTTTATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 19 0.95
21 1 0.05
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (20 bp):
AGTCTATTATCAGTATATGT
Found at i:20985934 original size:6 final size:6
Alignment explanation
Indices: 20985923--20985947 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
20985913 GTCGAAAACA
20985923 TTCCTT TTCCTT TTCCTT TTCCTT T
1 TTCCTT TTCCTT TTCCTT TTCCTT T
20985948 ACATAGATGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (6 bp):
TTCCTT
Found at i:21006934 original size:27 final size:27
Alignment explanation
Indices: 21006767--21006944 Score: 119
Period size: 27 Copynumber: 6.6 Consensus size: 27
21006757 TAAATTGTAC
*
21006767 AGCACTAAGTGTGCGA-TTCTACTT-TGT
1 AGCACTAAGTGTGCGAGTT-GA-TTATGT
* ** *
21006794 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * ** **
21006820 ATGCACTAAGAGTGCGAATTGACCATAC
1 A-GCACTAAGTGTGCGAGTTGATTATGT
* * *
21006848 GGCACTAAGTGTGCGAGTCTAACTATGT
1 AGCACTAAGTGTGCGAGT-TGATTATGT
* *
21006876 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * *
21006903 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
21006930 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
21006945 GGCTCAATAT
Statistics
Matches: 116, Mismatches: 30, Indels: 10
0.74 0.19 0.06
Matches are distributed among these distances:
26 1 0.01
27 93 0.80
28 22 0.19
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:21006935 original size:82 final size:81
Alignment explanation
Indices: 21006764--21006944 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
21006754 GATTAAATTG
* * * *
21006764 TACAGCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
21006829 GAGTGCGAATTGACCA
66 GAGTGCGAATTGACCA
* ** *
21006845 TACGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
21006909 AA-ATGTGCGAGTTGATTA
64 AAGA-GTGCGAATTGACCA
* *
21006927 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
21006945 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 23 0.28
82 60 0.72
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GAGTGCGAATTGACCA
Found at i:21014941 original size:27 final size:27
Alignment explanation
Indices: 21014774--21014951 Score: 119
Period size: 27 Copynumber: 6.6 Consensus size: 27
21014764 TAAATTGTAC
*
21014774 AGCACTAAGTGTGCGA-TTCTACTT-TGT
1 AGCACTAAGTGTGCGAGTT-GA-TTATGT
* ** *
21014801 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * ** **
21014827 ATGCACTAAGAGTGCGAATTGACCATAC
1 A-GCACTAAGTGTGCGAGTTGATTATGT
* * *
21014855 GGCACTAAGTGTGCGAGTCTAACTATGT
1 AGCACTAAGTGTGCGAGT-TGATTATGT
* *
21014883 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * *
21014910 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
21014937 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
21014952 GGCTCAATAT
Statistics
Matches: 116, Mismatches: 30, Indels: 10
0.74 0.19 0.06
Matches are distributed among these distances:
26 1 0.01
27 93 0.80
28 22 0.19
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:21014942 original size:82 final size:81
Alignment explanation
Indices: 21014771--21014951 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
21014761 GATTAAATTG
* * * *
21014771 TACAGCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
21014836 GAGTGCGAATTGACCA
66 GAGTGCGAATTGACCA
* ** *
21014852 TACGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
21014916 AA-ATGTGCGAGTTGATTA
64 AAGA-GTGCGAATTGACCA
* *
21014934 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
21014952 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 23 0.28
82 60 0.72
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GAGTGCGAATTGACCA
Found at i:21016583 original size:39 final size:39
Alignment explanation
Indices: 21016531--21016658 Score: 193
Period size: 39 Copynumber: 3.3 Consensus size: 39
21016521 TATGAGATTG
21016531 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* * *
21016570 AAAATATCCGGACATGAGATCCGCAAGCTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* * **
21016609 AATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
21016648 AAAATATCCGG
1 AAAATATCCGG
21016659 GTTAAAGCCC
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 78 1.00
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
Found at i:21016672 original size:78 final size:76
Alignment explanation
Indices: 21016530--21016684 Score: 195
Period size: 78 Copynumber: 2.0 Consensus size: 76
21016520 GTATGAGATT
* * *
21016530 GAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGACATGAGATCCGCA
1 GAAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAGACCCGCA
*
21016595 AGCTATATGCTA
66 AGCT-TACGCTA
* * ** *
21016607 GAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAAAATATCCGG-GTTAAAGCCCCG
1 GAAA-ATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACAT-AAGACCCG
21016671 CAAGCTTACGCTA
64 CAAGCTTACGCTA
21016684 G
1 G
21016685 TAATGTATTC
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 12 0.18
78 55 0.82
ACGTcount: A:0.31, C:0.23, G:0.26, T:0.21
Consensus pattern (76 bp):
GAAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAGACCCGCA
AGCTTACGCTA
Found at i:21024524 original size:39 final size:39
Alignment explanation
Indices: 21024470--21024597 Score: 175
Period size: 39 Copynumber: 3.3 Consensus size: 39
21024460 TATGAGATTG
21024470 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* * * *
21024509 AAAATATCCGAACATGAGATCCTCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* * * **
21024548 AATATATCCGGACTTGAGGTCCGCAGGTTACGTGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
21024587 AAAATATCCGG
1 AAAATATCCGG
21024598 GTTAAAAACT
Statistics
Matches: 75, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
Found at i:21024614 original size:78 final size:76
Alignment explanation
Indices: 21024469--21024623 Score: 168
Period size: 78 Copynumber: 2.0 Consensus size: 76
21024459 GTATGAGATT
* * * * *
21024469 GAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGAACATGAGATCCTCA
1 GAAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGAACATAAAAACCGCA
*
21024534 GGCTATATGCTA
66 GGCT-TACGCTA
* * * ***
21024546 GAAATATATCCGGACTTGAGGTCCGCAGGTTACGTGCTGGAAAAATATCCG-GGTTAAAAACTCG
1 GAAA-ATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGAACATAAAAAC-CG
21024610 CAGGCTTACGCTA
64 CAGGCTTACGCTA
21024623 G
1 G
21024624 TAATGTATTC
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
77 15 0.23
78 49 0.77
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.23
Consensus pattern (76 bp):
GAAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGAACATAAAAACCGCA
GGCTTACGCTA
Found at i:21027215 original size:20 final size:20
Alignment explanation
Indices: 21027179--21027216 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
21027169 CCTGTACATG
*
21027179 GTAAAAATTTTCTAAGTTTT
1 GTAAAAATTCTCTAAGTTTT
21027199 GTAAAAATTACTC-AAGTT
1 GTAAAAATT-CTCTAAGTT
21027217 CTCGGTTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 14 0.88
21 2 0.12
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.42
Consensus pattern (20 bp):
GTAAAAATTCTCTAAGTTTT
Found at i:21031992 original size:20 final size:20
Alignment explanation
Indices: 21031953--21031992 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
21031943 GACATGGGGT
* * *
21031953 CGAAGAGGCTATGGGGAAAC
1 CGAAGAAGCTATGAGAAAAC
21031973 CGAAGAAGCTATGAGAAAAC
1 CGAAGAAGCTATGAGAAAAC
21031993 AGTACCCTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.15, G:0.33, T:0.10
Consensus pattern (20 bp):
CGAAGAAGCTATGAGAAAAC
Found at i:21037825 original size:13 final size:13
Alignment explanation
Indices: 21037807--21037832 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
21037797 TAAAAAATTT
21037807 GATGAGAATTTAA
1 GATGAGAATTTAA
21037820 GATGAGAATTTAA
1 GATGAGAATTTAA
21037833 TAATATAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.23, T:0.31
Consensus pattern (13 bp):
GATGAGAATTTAA
Found at i:21044282 original size:40 final size:40
Alignment explanation
Indices: 21044227--21044386 Score: 284
Period size: 40 Copynumber: 4.0 Consensus size: 40
21044217 TGAGAGTTAG
21044227 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
21044267 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
* *
21044307 ATATCTGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
* *
21044347 ATATCCGGGCTAAGTCTCAAAGAGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
21044387 GTAACACCCC
Statistics
Matches: 116, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 116 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
Found at i:21045806 original size:40 final size:40
Alignment explanation
Indices: 21045762--21045955 Score: 263
Period size: 40 Copynumber: 4.9 Consensus size: 40
21045752 GGATATAGCT
* *
21045762 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
21045802 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATT-TGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
* *
21045842 ACTCGCACAAATGCCTTCGAG-CTTAG-CCGG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
*
21045880 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
21045920 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
21045956 CATCCGAATA
Statistics
Matches: 138, Mismatches: 10, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
38 28 0.20
39 10 0.07
40 97 0.70
41 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:21045899 original size:78 final size:79
Alignment explanation
Indices: 21045762--21045948 Score: 279
Period size: 78 Copynumber: 2.4 Consensus size: 79
21045752 GGATATAGCT
* * * *
21045762 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACCAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
* *
21045827 AGCCCGGATTTGGTA
65 AGCCCGGAATTAGTA
*
21045842 ACTCGCACAAATGCCTTCGAG-CTTAGCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTT
21045905 AGCCCGGAATTAGTA
65 AGCCCGGAATTAGTA
21045920 ACTCGCACAAATGCCTTCGGGACTTAGCC
1 ACTCGCACAAATGCCTTCGGGACTTAGCC
21045949 CGGTTATCAT
Statistics
Matches: 97, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
77 1 0.01
78 66 0.68
79 11 0.11
80 19 0.20
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (79 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTA
GCCCGGAATTAGTA
Found at i:21053846 original size:40 final size:40
Alignment explanation
Indices: 21053797--21053976 Score: 260
Period size: 40 Copynumber: 4.5 Consensus size: 40
21053787 AGCTACTGCT
* *
21053797 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * *
21053837 CCAAA-GCCTTCGGGACTTAGCCTGGATTTGGTAACTCGCA
1 -CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
21053877 CAAATGCCTTCGAG-CTTAG-CCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
21053915 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
21053955 CAAATGCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
21053977 TGATTATCAT
Statistics
Matches: 127, Mismatches: 8, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
38 29 0.23
39 14 0.11
40 78 0.61
41 6 0.05
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:21053914 original size:78 final size:79
Alignment explanation
Indices: 21053797--21053976 Score: 249
Period size: 78 Copynumber: 2.3 Consensus size: 79
21053787 AGCTACTGCT
* * * *
21053797 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACCAAA-GCCTTCGGGACTTAGCCT
1 CAAATGCCTTCGAGACTTAG-CCGGAAT-TAGTAACTCGCA-CAAATGCCTTCGGGACTTAGCCC
* *
21053860 GGATTTGGTAACTCGCA
63 GGAATTAGTAACTCGCA
21053877 CAAATGCCTTCGAG-CTTAGCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGAGACTTAGCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
21053941 ATTAGTAACTCGCA
66 ATTAGTAACTCGCA
*
21053955 CAAATGCCTTCGGGACTTAGCC
1 CAAATGCCTTCGAGACTTAGCC
21053977 TGATTATCAT
Statistics
Matches: 90, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
77 4 0.04
78 61 0.68
79 12 0.13
80 13 0.14
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (79 bp):
CAAATGCCTTCGAGACTTAGCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:21055713 original size:40 final size:40
Alignment explanation
Indices: 21055658--21055821 Score: 274
Period size: 40 Copynumber: 4.1 Consensus size: 40
21055648 GGCTGTCACA
21055658 GGTGTTATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 GGTGTTATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
* *
21055698 GGTGTTACATTCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 GGTGTTATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
21055738 GGTGTTATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 GGTGTTATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
* * * *
21055778 GGTGTTATATCCAGGCTAGGTCCCGAAGAGCATTCATGCT
1 GGTGTTATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
21055818 GGTG
1 GGTG
21055822 ATGTGTATTC
Statistics
Matches: 116, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 116 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (40 bp):
GGTGTTATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
Found at i:21063965 original size:42 final size:42
Alignment explanation
Indices: 21063917--21063997 Score: 119
Period size: 42 Copynumber: 1.9 Consensus size: 42
21063907 CCGAGACTAG
**
21063917 GTGTAAGACCATATCT-AGGATATGACATCATTATGAAATTTC
1 GTGTAAGACCATATCTGA-GATATGACATCAAAATGAAATTTC
*
21063959 GTGTAAGACCATATCTGAGATATGGCATCAAAATGAAAT
1 GTGTAAGACCATATCTGAGATATGACATCAAAATGAAAT
21063998 CCCATATAAG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
42 34 0.97
43 1 0.03
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATATCTGAGATATGACATCAAAATGAAATTTC
Found at i:21064008 original size:42 final size:42
Alignment explanation
Indices: 21063920--21064014 Score: 102
Period size: 42 Copynumber: 2.3 Consensus size: 42
21063910 AGACTAGGTG
** ** * *
21063920 TAAGACCATATCTAGGATATGACATCATTATGAAATTTCGTG
1 TAAGACCATATCTAGGATATGACATCAAAATGAAATCCCATA
*
21063962 TAAGACCATATCT-GAGATATGGCATCAAAATGAAATCCCATA
1 TAAGACCATATCTAG-GATATGACATCAAAATGAAATCCCATA
*
21064004 TAAGACTATAT
1 TAAGACCATAT
21064015 TTGGGTTATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
41 1 0.02
42 43 0.98
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.29
Consensus pattern (42 bp):
TAAGACCATATCTAGGATATGACATCAAAATGAAATCCCATA
Found at i:21065454 original size:17 final size:18
Alignment explanation
Indices: 21065422--21065456 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
21065412 TCGTGTGGTT
21065422 CACCCGTGAAGGCCCACA
1 CACCCGTGAAGGCCCACA
*
21065440 CACCCGTG-TGGCCCACA
1 CACCCGTGAAGGCCCACA
21065457 TGACCCACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.23, C:0.46, G:0.23, T:0.09
Consensus pattern (18 bp):
CACCCGTGAAGGCCCACA
Found at i:21068165 original size:16 final size:16
Alignment explanation
Indices: 21068144--21068175 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
21068134 AGTTTAGTGG
21068144 CAAAAATATAATTTTT
1 CAAAAATATAATTTTT
*
21068160 CAAAAATATGATTTTT
1 CAAAAATATAATTTTT
21068176 GGTTCAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.44
Consensus pattern (16 bp):
CAAAAATATAATTTTT
Found at i:21074693 original size:46 final size:46
Alignment explanation
Indices: 21074642--21074811 Score: 166
Period size: 46 Copynumber: 3.7 Consensus size: 46
21074632 ACATCGCGTA
*
21074642 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTTATGTCTTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTATGTCTTGAG
* * * ** *
21074688 GCCGATACATGTCCCAGACATGTCTTACACTAGCACT-TGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TTATGTCTTGAG
* * * ** *
21074734 GCCGATGCCATATTCCAGACATGCCTTACACTGGCTCTCA-G-AATGTG
1 GCCGATG-CATGTCCCAGACATGTCTTACACTGGCT-T-ATGTCTTGAG
21074781 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
21074812 AGCTCACGCA
Statistics
Matches: 97, Mismatches: 22, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
46 64 0.66
47 32 0.33
48 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTATGTCTTGAG
Found at i:21074764 original size:93 final size:92
Alignment explanation
Indices: 21074642--21074814 Score: 233
Period size: 93 Copynumber: 1.9 Consensus size: 92
21074632 ACATCGCGTA
* * **
21074642 GCCGATGCATGTCCCAAACATGTCTTACACTGGCT-T-ATGTCTTGAGGCCGATACATGTCCCAG
1 GCCGATGCATATCCCAAACATGCCTTACACTGGCTCTCA-G-AATGAGGCCGATACATGTCCCAG
21074705 ACATGTCTTACACTAGCACTTGTCTCAAT
64 ACATGTCTTACACTAGCACTTGTCTCAAT
* * * *
21074734 GCCGATGCCATATTCCAGACATGCCTTACACTGGCTCTCAGAATGTGGCCGATGCATGTCCCAGA
1 GCCGATG-CATATCCCAAACATGCCTTACACTGGCTCTCAGAATGAGGCCGATACATGTCCCAGA
21074799 CATGTCTTACACTAGC
65 CATGTCTTACACTAGC
21074815 TCACGCAAGT
Statistics
Matches: 70, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
92 7 0.10
93 60 0.86
94 2 0.03
95 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (92 bp):
GCCGATGCATATCCCAAACATGCCTTACACTGGCTCTCAGAATGAGGCCGATACATGTCCCAGAC
ATGTCTTACACTAGCACTTGTCTCAAT
Found at i:21081083 original size:20 final size:18
Alignment explanation
Indices: 21081049--21081085 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
21081039 GCAACTCATA
21081049 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
21081067 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
21081086 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:21083840 original size:43 final size:43
Alignment explanation
Indices: 21083793--21083963 Score: 270
Period size: 43 Copynumber: 4.0 Consensus size: 43
21083783 TCGGGCTGTT
** * *
21083793 ACATCACCGGCATTACGCCTGCTAGGCACGAAGGCCCGATTAC
1 ACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATAC
21083836 ACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATAC
1 ACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATAC
*
21083879 ACATCACTGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATAC
1 ACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATAC
* * *
21083922 ACATCACCGGCACTAAGCCTGCTAGGTACAAAGGCCCGAATA
1 ACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATA
21083964 TAATACCAGC
Statistics
Matches: 119, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 119 1.00
ACGTcount: A:0.30, C:0.33, G:0.24, T:0.13
Consensus pattern (43 bp):
ACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATAC
Found at i:21084007 original size:38 final size:38
Alignment explanation
Indices: 21083956--21084039 Score: 132
Period size: 38 Copynumber: 2.2 Consensus size: 38
21083946 GGTACAAAGG
* * *
21083956 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
21083994 CTCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
21084032 CCCGAATA
1 CCCGAATA
21084040 CACATCAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.21
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:21090752 original size:43 final size:43
Alignment explanation
Indices: 21090705--21090812 Score: 198
Period size: 43 Copynumber: 2.5 Consensus size: 43
21090695 CATTACGCCC
*
21090705 GCTAGGCACGAAGGCCTGAATAAACATCACCGGCACGAAGCCT
1 GCTAGGCACGAAGGCCCGAATAAACATCACCGGCACGAAGCCT
*
21090748 GCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCT
1 GCTAGGCACGAAGGCCCGAATAAACATCACCGGCACGAAGCCT
21090791 GCTAGGCACGAAGGCCCGAATA
1 GCTAGGCACGAAGGCCCGAATA
21090813 TAATACCAGC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 63 1.00
ACGTcount: A:0.31, C:0.31, G:0.27, T:0.10
Consensus pattern (43 bp):
GCTAGGCACGAAGGCCCGAATAAACATCACCGGCACGAAGCCT
Found at i:21093162 original size:28 final size:28
Alignment explanation
Indices: 21093097--21093195 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
21093087 CATGAGATTG
* * *
21093097 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
21093126 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
21093154 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
21093182 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
21093196 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:21107398 original size:38 final size:38
Alignment explanation
Indices: 21107347--21107430 Score: 132
Period size: 38 Copynumber: 2.2 Consensus size: 38
21107337 GGCACGAAGG
* * *
21107347 CTCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CTCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
21107385 CTCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CTCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
21107423 CTTGAATA
1 CTCGAATA
21107431 CACATCAAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 42 1.00
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (38 bp):
CTCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:21108843 original size:37 final size:37
Alignment explanation
Indices: 21108784--21108892 Score: 175
Period size: 37 Copynumber: 2.9 Consensus size: 37
21108774 AGCTCAGACG
* *
21108784 AAATCTCCACA-ATAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGT-AGTCATCGGGTCTTACCCGGACA
21108821 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
21108858 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
21108893 ATATATTTCC
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
37 67 0.99
38 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:21109154 original size:47 final size:47
Alignment explanation
Indices: 21109095--21109361 Score: 462
Period size: 47 Copynumber: 5.7 Consensus size: 47
21109085 CATACATATT
* *
21109095 TCACATTAGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
21109142 TCACATTGGCCATTCGGCCTTAACACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
21109189 TCACATTGGCCATTCGACCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
21109236 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
21109283 TCACATTGGCCATTCGGCCTTAACACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
21109330 TGACATTGGCCATTCGGCCTTATCTCATATAT
1 TCACATTGGCCATTCGGCCTTATCACATATAT
21109362 ACACCTAAAA
Statistics
Matches: 208, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 208 1.00
ACGTcount: A:0.27, C:0.28, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:21109214 original size:22 final size:22
Alignment explanation
Indices: 21109188--21109262 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
21109178 GTTCACATTC
21109188 ATCACATTGGCCATTCGACCTT
1 ATCACATTGGCCATTCGACCTT
* *
21109210 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGACCTT
*
21109234 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGACCTT
21109257 ATCACA
1 ATCACA
21109263 CATATGCATG
Statistics
Matches: 41, Mismatches: 5, Indels: 14
0.68 0.08 0.23
Matches are distributed among these distances:
22 16 0.39
23 7 0.17
24 8 0.20
25 10 0.24
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGACCTT
Found at i:21113410 original size:40 final size:40
Alignment explanation
Indices: 21113378--21113809 Score: 659
Period size: 40 Copynumber: 10.8 Consensus size: 40
21113368 CCAGCATGAT
* * * *
21113378 TGCTCTTTGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
21113418 TGCTCTTTGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
21113458 TGCTCTTCGGGGTTTAGCGCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
21113498 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
21113538 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
21113578 TGCTCCTCGGGACTTAGCCCGGATATATCGCTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
21113618 TGCTCTTTGGGACTTCGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
21113658 TGCTCCTT-GGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCT-CTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
21113698 TACTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
21113738 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
21113778 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
21113810 CTCAATTCTC
Statistics
Matches: 363, Mismatches: 27, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
39 2 0.01
40 358 0.99
41 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:21115141 original size:37 final size:37
Alignment explanation
Indices: 21115077--21115184 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
21115067 AGCTCAGACG
** *
21115077 AAATCTCCACA-AAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
21115113 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
21115150 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
21115185 ATATATTTCC
Statistics
Matches: 67, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
36 11 0.16
37 56 0.84
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:21115529 original size:25 final size:25
Alignment explanation
Indices: 21115500--21115577 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
21115490 ATTCGGCCTT
21115500 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
21115525 AT--CACAT-TGGCCA--TTCGGC-TTT
1 ATCACACATAT-G-CATGTTC-ACATTC
21115547 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
21115572 ATCACA
1 ATCACA
21115578 TTGGCCATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 8 0.20
23 9 0.22
24 9 0.22
25 14 0.35
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.32
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:21115651 original size:47 final size:47
Alignment explanation
Indices: 21115386--21115643 Score: 464
Period size: 47 Copynumber: 5.5 Consensus size: 47
21115376 CATACATATT
*
21115386 TCACATTAGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
*
21115433 TCACATTGGCCATTCGGCCTTA-CACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
21115479 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
*
21115526 TCACATTGGCCATTCGGCTTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* *
21115573 TCACATTGGCCATTCGGCCTTAACACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
21115620 TCACATTGGCCATTCGGCCTTATC
1 TCACATTGGCCATTCGGCCTTATC
21115644 TCATATATAC
Statistics
Matches: 202, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
46 45 0.22
47 157 0.78
ACGTcount: A:0.26, C:0.29, G:0.13, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
Found at i:21124190 original size:13 final size:13
Alignment explanation
Indices: 21124172--21124207 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
21124162 TCTACCACAT
*
21124172 GCCCGTGTCTCTA
1 GCCCGTGTCCCTA
21124185 GCCCGTGTCCCTA
1 GCCCGTGTCCCTA
21124198 GCCCGTGTCC
1 GCCCGTGTCC
21124208 TTCACACGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.06, C:0.44, G:0.25, T:0.25
Consensus pattern (13 bp):
GCCCGTGTCCCTA
Found at i:21125337 original size:46 final size:46
Alignment explanation
Indices: 21125211--21125422 Score: 148
Period size: 46 Copynumber: 4.6 Consensus size: 46
21125201 GTGTCGAAGC
* * *
21125211 CATGTCCCAGACATGGTCTTACACT-G-ACACATCTCGTA-GCTGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCACTCATCTCG-AGGCCGATA
* * * *
21125256 CATGTCCCAGACATATCTTATACTAGCTTA-T-GTCTCGAGGCTGATA
1 CATGTCCCAGACATGTCTTACACTAGC--ACTCATCTCGAGGCCGATA
* * * *
21125302 CATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGCCGATGT
1 CATGTCCCAGACATGTCTTACACTAGCACTCATCTCGAGGCCGAT-A
* * * * * * *
21125349 CATATCCCAGACATGGTCTTACATTGGCTCTCATAAT-GTGGCCGATC
1 CATGTCCCAGACAT-GTCTTACACTAGCACTCAT-CTCGAGGCCGATA
*
21125396 CATGTCCTAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
21125423 TCACGCAAGT
Statistics
Matches: 132, Mismatches: 25, Indels: 19
0.75 0.14 0.11
Matches are distributed among these distances:
44 9 0.07
45 17 0.13
46 58 0.44
47 25 0.19
48 22 0.17
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCACTCATCTCGAGGCCGATA
Found at i:21137613 original size:19 final size:19
Alignment explanation
Indices: 21137574--21137609 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
21137564 ATGTTGTTTA
*
21137574 CCCGTGTGGGCCCATACGC
1 CCCGTGTGGGCCCACACGC
21137593 CCCGTGT-GGCCCACACG
1 CCCGTGTGGGCCCACACG
21137610 GCCCAAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.11, C:0.44, G:0.31, T:0.14
Consensus pattern (19 bp):
CCCGTGTGGGCCCACACGC
Found at i:21140744 original size:27 final size:27
Alignment explanation
Indices: 21140708--21140761 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
21140698 TCATTTGTTG
21140708 TAATAAACTGAGAATATTATATTCAAA
1 TAATAAACTGAGAATATTATATTCAAA
21140735 TAATAAACTGAGAATATTATATTCAAA
1 TAATAAACTGAGAATATTATATTCAAA
21140762 CATTTTATCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.33
Consensus pattern (27 bp):
TAATAAACTGAGAATATTATATTCAAA
Found at i:21141181 original size:9 final size:9
Alignment explanation
Indices: 21141167--21141192 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
21141157 AGATTAAATT
21141167 GTAAAAGTA
1 GTAAAAGTA
21141176 GTAAAAGTA
1 GTAAAAGTA
21141185 GTAAAAGT
1 GTAAAAGT
21141193 TATTCACTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.23, T:0.23
Consensus pattern (9 bp):
GTAAAAGTA
Found at i:21150218 original size:41 final size:41
Alignment explanation
Indices: 21150166--21150355 Score: 267
Period size: 40 Copynumber: 4.7 Consensus size: 41
21150156 CGCTGACTCA
* *
21150166 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * * *
21150207 GAAGGCCCTTCGAAACTAGGTTCAG-TTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* *
21150247 AAAAGCCCTTCGAGACCAAGCTTGGACTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
21150288 AAAA-CCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
21150328 AAAAGCCCTTCGAGACCAAGCTCGGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
21150356 TAAACCCCAA
Statistics
Matches: 127, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
40 68 0.54
41 59 0.46
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:21150255 original size:81 final size:81
Alignment explanation
Indices: 21150166--21150355 Score: 265
Period size: 81 Copynumber: 2.3 Consensus size: 81
21150156 CGCTGACTCA
* ** * * *
21150166 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCCGAAGGCCCTTCGAAACTAGGTTCA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCC-AAAACCCTTCGAAACCAAGCTCA
21150231 G-TTATGACACTGGCTC
65 GATTATGACACTGGCTC
* * * * *
21150247 AAAAGCCCTTCGAGACCAAGCTTGGACTATGACACTGGCTCAAAACCCTTCGAGACCAAGCTCGG
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCCAAAACCCTTCGAAACCAAGCTCAG
21150312 ATTATGACACTGGCTC
66 ATTATGACACTGGCTC
21150328 AAAAGCCCTTCGAGACCAAGCTCGGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
21150356 TAAACCCCAA
Statistics
Matches: 95, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
80 17 0.18
81 78 0.82
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (81 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCCAAAACCCTTCGAAACCAAGCTCAG
ATTATGACACTGGCTC
Found at i:21158775 original size:18 final size:19
Alignment explanation
Indices: 21158744--21158779 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
21158734 ACCACGGCCT
*
21158744 CTCTGTGGCTGCTAAACAC
1 CTCTGTGGCGGCTAAACAC
21158763 CTCT-TGGCGGCTAAACA
1 CTCTGTGGCGGCTAAACA
21158780 GTACCCAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.25
Consensus pattern (19 bp):
CTCTGTGGCGGCTAAACAC
Found at i:21173258 original size:39 final size:40
Alignment explanation
Indices: 21173204--21173294 Score: 121
Period size: 39 Copynumber: 2.3 Consensus size: 40
21173194 CAAGGGAACG
* * *
21173204 TATGTGGAATCAGGGGTACCGAAGTACAATTAGGGGCA-C
1 TATGTGCAATCAGGGGTACCGAAGTACAATCAGGAGCATC
* * *
21173243 TATGTGCAATTAGGGGTACTGAAGTACAATCAGGAGCATG
1 TATGTGCAATCAGGGGTACCGAAGTACAATCAGGAGCATC
21173283 TATGTGCAATCA
1 TATGTGCAATCA
21173295 TACAATAATT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 33 0.75
40 11 0.25
ACGTcount: A:0.32, C:0.14, G:0.30, T:0.24
Consensus pattern (40 bp):
TATGTGCAATCAGGGGTACCGAAGTACAATCAGGAGCATC
Found at i:21175578 original size:24 final size:24
Alignment explanation
Indices: 21175551--21175597 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
21175541 TTGGCTACGA
*
21175551 ACTCATAAATTTCACATTTCATAT
1 ACTCACAAATTTCACATTTCATAT
21175575 ACTCACAAATTTCACATTTCATA
1 ACTCACAAATTTCACATTTCATA
21175598 CCTGGACGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.38
Consensus pattern (24 bp):
ACTCACAAATTTCACATTTCATAT
Found at i:21175936 original size:18 final size:18
Alignment explanation
Indices: 21175892--21175943 Score: 86
Period size: 18 Copynumber: 2.8 Consensus size: 18
21175882 GAAACCATCG
*
21175892 GCATTCAAAGCCAAATGA
1 GCATTCAATGCCAAATGA
21175910 GCATTCAATGCCAAATGA
1 GCATTCAATGCCAAATGA
21175928 GCATTCAATGCTCAAA
1 GCATTCAATGC-CAAA
21175944 GTGCAAACAA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
18 28 0.88
19 4 0.12
ACGTcount: A:0.40, C:0.23, G:0.15, T:0.21
Consensus pattern (18 bp):
GCATTCAATGCCAAATGA
Found at i:21181885 original size:30 final size:30
Alignment explanation
Indices: 21181851--21181907 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
21181841 CTTTAATACG
*
21181851 AACTTTGGCAAAATTACATTTTTGCCCGTA
1 AACTTTGGCAAAATTACACTTTTGCCCGTA
* *
21181881 AACTTTTGCATAATTACACTTTTGCCC
1 AACTTTGGCAAAATTACACTTTTGCCC
21181908 CTAGGCTCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.11, T:0.39
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCGTA
Found at i:21183172 original size:40 final size:40
Alignment explanation
Indices: 21183100--21183360 Score: 263
Period size: 40 Copynumber: 6.5 Consensus size: 40
21183090 CAGTAAAAAT
* * * * *
21183100 AGGGGCACATAAGTGCATTCAGGGTTGCCAAAGTACAGTC
1 AGGGGCACATATGTGCAATCAGGGGTACCAAAGTACAATC
* * * *
21183140 AGGGGCACGTAAGTGCAATTAGGGGTATCAAAGTACAAAT-
1 AGGGGCACATATGTGCAATCAGGGGTACCAAAGTAC-AATC
* * * *
21183180 AGGGGTACATATGTACAAACAGGGGTACCAAAGTACAAAC
1 AGGGGCACATATGTGCAATCAGGGGTACCAAAGTACAATC
* * * * * * *
21183220 TGGGACACGTATGTGCAATCAAGGGTAACGAAGTATAATC
1 AGGGGCACATATGTGCAATCAGGGGTACCAAAGTACAATC
* * *
21183260 AGGGGCACGTATGTGCAATCAGGGGTACCGAAGTATAATC
1 AGGGGCACATATGTGCAATCAGGGGTACCAAAGTACAATC
* * *
21183300 AAGGGCACATATGTGCAATCAGCGGTACTAAAGTACAATC
1 AGGGGCACATATGTGCAATCAGGGGTACCAAAGTACAATC
*
21183340 AAGGGCACATATGTGCAATCA
1 AGGGGCACATATGTGCAATCA
21183361 TACAATAATT
Statistics
Matches: 183, Mismatches: 36, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
39 2 0.01
40 179 0.98
41 2 0.01
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.20
Consensus pattern (40 bp):
AGGGGCACATATGTGCAATCAGGGGTACCAAAGTACAATC
Found at i:21183219 original size:20 final size:19
Alignment explanation
Indices: 21183160--21183219 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 19
21183150 AAGTGCAATT
*
21183160 AGGGGTATCAAAGTACAAAT
1 AGGGGTA-CAAAGTACAAAC
*
21183180 AGGGGTACATATGTACAAAC
1 AGGGGTACA-AAGTACAAAC
21183200 AGGGGTACCAAAGTACAAAC
1 AGGGGTA-CAAAGTACAAAC
21183220 TGGGACACGT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.06
20 31 0.89
21 2 0.06
ACGTcount: A:0.43, C:0.15, G:0.25, T:0.17
Consensus pattern (19 bp):
AGGGGTACAAAGTACAAAC
Found at i:21183279 original size:20 final size:20
Alignment explanation
Indices: 21183225--21183360 Score: 71
Period size: 20 Copynumber: 6.8 Consensus size: 20
21183215 CAAACTGGGA
*
21183225 CACGTATGTGCAATCAAGGGT
1 CACGTATGTGCAATC-AGGGG
* * **
21183246 AACG-AAGTATAATCAGGGG
1 CACGTATGTGCAATCAGGGG
21183265 CACGTATGTGCAATCAGGGG
1 CACGTATGTGCAATCAGGGG
* * ** *
21183285 TACCG-AAGTATAATCAAGGG
1 CA-CGTATGTGCAATCAGGGG
* *
21183305 CACATATGTGCAATCAGCGG
1 CACGTATGTGCAATCAGGGG
* * * *
21183325 TAC-TAAAGTACAATCAAGGG
1 CACGT-ATGTGCAATCAGGGG
*
21183345 CACATATGTGCAATCA
1 CACGTATGTGCAATCA
21183361 TACAATAATT
Statistics
Matches: 81, Mismatches: 29, Indels: 11
0.67 0.24 0.09
Matches are distributed among these distances:
19 9 0.11
20 66 0.81
21 6 0.07
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (20 bp):
CACGTATGTGCAATCAGGGG
Found at i:21185320 original size:16 final size:16
Alignment explanation
Indices: 21185299--21185329 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
21185289 AGATTTAGTA
21185299 TTAATTCAAACAATTT
1 TTAATTCAAACAATTT
*
21185315 TTAATTCAAATAATT
1 TTAATTCAAACAATT
21185330 AAAAAAATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.10, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAATTCAAACAATTT
Found at i:21187808 original size:24 final size:24
Alignment explanation
Indices: 21187777--21187843 Score: 75
Period size: 24 Copynumber: 2.8 Consensus size: 24
21187767 TCTTCCTTGA
21187777 CTTCTTTCTTCTCCTCGTTT-TTCT
1 CTTCTTTCTTCTCCTC-TTTCTTCT
* *
21187801 CTTCTTTCTTTTCCTCTTTCTTTT
1 CTTCTTTCTTCTCCTCTTTCTTCT
*
21187825 CTTCCTTT-TTCTCTTCTTT
1 CTT-CTTTCTTCTCCTCTTT
21187844 TGCAGGTCCT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
23 3 0.08
24 30 0.81
25 4 0.11
ACGTcount: A:0.00, C:0.31, G:0.01, T:0.67
Consensus pattern (24 bp):
CTTCTTTCTTCTCCTCTTTCTTCT
Found at i:21187812 original size:15 final size:16
Alignment explanation
Indices: 21187802--21187844 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
21187792 CGTTTTTCTC
21187802 TTCTTTCTTTTCCTCT
1 TTCTTTCTTTTCCTCT
* *
21187818 TTCTTT-TCTTCCTTT
1 TTCTTTCTTTTCCTCT
21187833 TTCTCTTCTTTT
1 TTCT-TTCTTTT
21187845 GCAGGTCCTA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
15 11 0.50
16 8 0.36
17 3 0.14
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (16 bp):
TTCTTTCTTTTCCTCT
Found at i:21187820 original size:21 final size:21
Alignment explanation
Indices: 21187777--21187839 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
21187767 TCTTCCTTGA
*
21187777 CTTCTTTCTTCTCCTCGTTTTTCT
1 CTTCTTTCTTTTCCTC---TTTCT
21187801 CTTCTTTCTTTTCCTCTTTCT
1 CTTCTTTCTTTTCCTCTTTCT
* * *
21187822 TTTCTTCCTTTTTCTCTT
1 CTTCTTTCTTTTCCTCTT
21187840 CTTTTGCAGG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
21 20 0.57
24 15 0.43
ACGTcount: A:0.00, C:0.32, G:0.02, T:0.67
Consensus pattern (21 bp):
CTTCTTTCTTTTCCTCTTTCT
Found at i:21187839 original size:12 final size:12
Alignment explanation
Indices: 21187777--21187843 Score: 66
Period size: 12 Copynumber: 5.6 Consensus size: 12
21187767 TCTTCCTTGA
21187777 CTTCTTTCTTCT
1 CTTCTTTCTTCT
*
21187789 CCTCGTTT-TTCT
1 CTTC-TTTCTTCT
*
21187801 CTTCTTTCTTTT
1 CTTCTTTCTTCT
* *
21187813 CCTCTTTCTTTT
1 CTTCTTTCTTCT
21187825 CTTCCTTT-TTCT
1 CTT-CTTTCTTCT
21187837 CTTCTTT
1 CTTCTTT
21187844 TGCAGGTCCT
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
11 7 0.15
12 32 0.70
13 7 0.15
ACGTcount: A:0.00, C:0.31, G:0.01, T:0.67
Consensus pattern (12 bp):
CTTCTTTCTTCT
Found at i:21188317 original size:25 final size:25
Alignment explanation
Indices: 21188284--21188332 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
21188274 ATAAAGAAAC
21188284 ACAAATTTACCTGAGCCATTCTATA
1 ACAAATTTACCTGAGCCATTCTATA
21188309 ACAAATTTACCTGAGCCATTCTAT
1 ACAAATTTACCTGAGCCATTCTAT
21188333 CTGGTATGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.33
Consensus pattern (25 bp):
ACAAATTTACCTGAGCCATTCTATA
Found at i:21190794 original size:40 final size:40
Alignment explanation
Indices: 21190696--21190958 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
21190686 TCCTCGTTCA
* * * * *
21190696 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
21190735 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
21190775 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
21190815 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
21190855 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
21190895 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
21190935 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
21190959 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:21204790 original size:46 final size:47
Alignment explanation
Indices: 21204684--21204799 Score: 180
Period size: 50 Copynumber: 2.4 Consensus size: 47
21204674 TGTCTTCGAC
21204684 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
21204734 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
21204780 ATGGACTTACATGGCTCATT
1 ATGGACTTACATGGCTCATT
21204800 TCTATCCTGT
Statistics
Matches: 63, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
46 29 0.46
50 34 0.54
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.34
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:21206672 original size:37 final size:37
Alignment explanation
Indices: 21206631--21206736 Score: 187
Period size: 37 Copynumber: 2.9 Consensus size: 37
21206621 CGAATAGTCC
*
21206631 CCACACGTAGTTATCGGGTCTTACCCGGAATAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGAATAAATCT
21206668 CCACACGTAGTCATCGGGTCTTACCCGGACAT-AATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGA-ATAAATCT
21206705 CCACACGTAGTCATCGGGTCTTACCCGGAATA
1 CCACACGTAGTCATCGGGTCTTACCCGGAATA
21206737 TATTTCCAAG
Statistics
Matches: 66, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
36 2 0.03
37 62 0.94
38 2 0.03
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGAATAAATCT
Found at i:21206985 original size:48 final size:48
Alignment explanation
Indices: 21206922--21207241 Score: 473
Period size: 48 Copynumber: 6.9 Consensus size: 48
21206912 ACATATACAT
*
21206922 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
*
21206970 ATATTTCACACTAGCCATTCGGCTTTACCACATATACGTATCTCATAC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
*
21207018 ATATTTCACACTAGCCATTCGGCTTTACCACATATACGTATCTCATAC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
*
21207066 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAT
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
* *
21207114 ATATTTCACATTAGCCATTCGACTTTA-C-C----AC--A--T-ATAC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
*
21207151 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
*
21207199 ATATTTCACACTAGCCATTCGGCTTTACAACACATATATATAT
1 ATATTTCACACTAGCCATTCGGCTTTAC--CACATATACATAT
21207242 TTATCTTGTA
Statistics
Matches: 249, Mismatches: 10, Indels: 24
0.88 0.04 0.08
Matches are distributed among these distances:
37 29 0.12
38 2 0.01
39 1 0.00
40 1 0.00
42 2 0.01
43 2 0.01
45 1 0.00
46 1 0.00
47 2 0.01
48 196 0.79
50 12 0.05
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
Found at i:21207157 original size:37 final size:37
Alignment explanation
Indices: 21207114--21207191 Score: 147
Period size: 37 Copynumber: 2.1 Consensus size: 37
21207104 TATCTCATAT
21207114 ATATTTCACATTAGCCATTCGACTTTACCACATATAC
1 ATATTTCACATTAGCCATTCGACTTTACCACATATAC
*
21207151 ATATTTCACATTAGCCATTCGGCTTTACCACATATAC
1 ATATTTCACATTAGCCATTCGACTTTACCACATATAC
21207188 ATAT
1 ATAT
21207192 CTCATACATA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (37 bp):
ATATTTCACATTAGCCATTCGACTTTACCACATATAC
Found at i:21207157 original size:85 final size:86
Alignment explanation
Indices: 21207062--21207243 Score: 303
Period size: 85 Copynumber: 2.1 Consensus size: 86
21207052 TACGTATCTC
* *
21207062 ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTA
1 ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTA
21207127 GCCATTCGACTTTAC-CACAT
66 GCCATTCGACTTTACACACAT
*
21207147 ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTA
1 ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTA
*
21207212 GCCATTCGGCTTTACAACACAT
66 GCCATTCGACTTTAC-ACACAT
*
21207234 ATATATATTT
1 ATACATATTT
21207244 ATCTTGTACA
Statistics
Matches: 90, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
85 76 0.84
87 14 0.16
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (86 bp):
ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTA
GCCATTCGACTTTACACACAT
Found at i:21210535 original size:40 final size:40
Alignment explanation
Indices: 21210468--21210644 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
21210458 ACCCAAGTAT
*
21210468 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
21210507 CCTCGGGTCTTAGCCCAGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
21210547 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* *
21210587 CTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
21210627 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
21210645 TTATCATCCG
Statistics
Matches: 117, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 12 0.10
40 102 0.87
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:21218957 original size:40 final size:40
Alignment explanation
Indices: 21218890--21219145 Score: 324
Period size: 40 Copynumber: 6.5 Consensus size: 40
21218880 ACCCAAGTAT
*
21218890 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
21218929 CCTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
21218969 CTTCGGGTCTTAGCCC-GATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* *
21219008 CTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
21219048 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* *
21219088 CTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
21219128 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
21219146 TTATCATCCG
Statistics
Matches: 185, Mismatches: 25, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
38 1 0.01
39 45 0.24
40 137 0.74
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:21219111 original size:80 final size:80
Alignment explanation
Indices: 21218890--21219145 Score: 403
Period size: 79 Copynumber: 3.2 Consensus size: 80
21218880 ACCCAAGTAT
* * * * *
21218890 CTTCGGGAT-TTAG-CCGGATATAA-CAACTCGCACAAATGCCCTCGGGTCTTAGCCCGGATATA
1 CTTCGGG-TCTTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCCCGGATATA
21218952 GCAACTCGCACAAATGC
64 GCAACTCGCACAAATGC
21218969 CTTCGGGTCTTAGCCC-GATATAATCACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
1 CTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
21219033 AACTCGCACAAATGC
66 AACTCGCACAAATGC
21219048 CTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
1 CTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
21219113 AACTCGCACAAATGC
66 AACTCGCACAAATGC
* *
21219128 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
21219146 TTATCATCCG
Statistics
Matches: 166, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
78 1 0.01
79 83 0.50
80 82 0.49
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (80 bp):
CTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
AACTCGCACAAATGC
Found at i:21230116 original size:43 final size:43
Alignment explanation
Indices: 21230053--21230149 Score: 185
Period size: 43 Copynumber: 2.3 Consensus size: 43
21230043 ACGGCCGGAG
21230053 ACACGGGCGTGCCACTTTGCCGTGTAAGGGACATGGTTGGGGC
1 ACACGGGCGTGCCACTTTGCCGTGTAAGGGACATGGTTGGGGC
*
21230096 ATACGGGCGTGCCACTTTGCCGTGTAAGGGACATGGTTGGGGC
1 ACACGGGCGTGCCACTTTGCCGTGTAAGGGACATGGTTGGGGC
21230139 ACACGGGCGTG
1 ACACGGGCGTG
21230150 TGACCCCTCC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.16, C:0.23, G:0.40, T:0.21
Consensus pattern (43 bp):
ACACGGGCGTGCCACTTTGCCGTGTAAGGGACATGGTTGGGGC
Found at i:21232341 original size:15 final size:16
Alignment explanation
Indices: 21232316--21232348 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
21232306 ATAGAAAGAA
21232316 CATTATATGCATTCAT
1 CATTATATGCATTCAT
21232332 CATT-TATGCATTCAT
1 CATTATATGCATTCAT
21232347 CA
1 CA
21232349 AAATGAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.30, C:0.21, G:0.06, T:0.42
Consensus pattern (16 bp):
CATTATATGCATTCAT
Found at i:21232967 original size:44 final size:45
Alignment explanation
Indices: 21232913--21233128 Score: 188
Period size: 47 Copynumber: 4.7 Consensus size: 45
21232903 TACGCGTGCT
* *
21232913 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCT-TAGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCACATCTCTGTAGCC
* * ** * *
21232957 GATGCGTGTCCCAAACACATCTTACACTGGC-TATCTCTGTCGAGGTC
1 GATGCATGTCCCAGACATGTCTTACACTGGCACATCTCTGT--A-GCC
*
21233004 GATGCATGTCCCAGACATGTCTTACTCTGGCACTCATCTCTGT-GCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCA--CATCTCTGTAGCC
* * * *
21233050 GTTGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAATGTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCACATC-T-CTGTAGCC
**
21233098 GAAACATGTCCCAGACATGTCTTACACTGGC
1 GATGCATGTCCCAGACATGTCTTACACTGGC
21233129 GCACAAATCA
Statistics
Matches: 138, Mismatches: 22, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
43 5 0.04
44 27 0.20
45 2 0.01
46 21 0.15
47 59 0.43
48 16 0.12
50 8 0.06
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCACATCTCTGTAGCC
Found at i:21233128 original size:94 final size:91
Alignment explanation
Indices: 21232858--21233128 Score: 271
Period size: 94 Copynumber: 2.9 Consensus size: 91
21232848 ATGGGATATA
* * * * *
21232858 TTGCCGATGCCATGTCCCAGAAATGGTCTTATACTGGCTCTCATATACGCGTGCTGATGCATGTC
1 TTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATGAG-GCCGATGCATGTC
*
21232923 CCAGACATGTCTTACACTAGCACAACTC
64 CCAGACATGTCTTACACTGGCACAACTC
* * ** * *
21232951 TTAGCCGATG-CGTGTCCCAAACA-CATCTTACACTGGCTATCTC-T-GTCGAGGTCGATGCATG
1 TT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC--TCTCATAAT-GAGGCCGATGCATG
* *
21233012 TCCCAGACATGTCTTACTCTGGCACTCATCTC
62 TCCCAGACATGTCTTACACTGGCA--CAACTC
* * **
21233044 TGTGCCGTTGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAACATGTCC
1 T-TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCC
21233109 CAGACATGTCTTACACTGGC
65 CAGACATGTCTTACACTGGC
21233129 GCACAAATCA
Statistics
Matches: 142, Mismatches: 25, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
91 31 0.22
92 13 0.09
93 29 0.20
94 56 0.39
95 13 0.09
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (91 bp):
TTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCC
AGACATGTCTTACACTGGCACAACTC
Found at i:21233509 original size:30 final size:30
Alignment explanation
Indices: 21233468--21233525 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
21233458 AAATTTATAT
* *
21233468 CTTTGGTAAAATGACCATTTTGCCCCTAGA
1 CTTTGGCAAAATGACCATTTTACCCCTAGA
21233498 CTTTGGCAAAATGACCATTTTACCCCTA
1 CTTTGGCAAAATGACCATTTTACCCCTA
21233526 TGCCCTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAGA
Found at i:21237165 original size:36 final size:36
Alignment explanation
Indices: 21237120--21237200 Score: 135
Period size: 36 Copynumber: 2.2 Consensus size: 36
21237110 TAAAGATATG
21237120 CAATCTTAGATATGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGATA
*
21237156 CAATGTTAGATATGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGATA
21237192 TGCAATCTT
1 --CAATCTT
21237201 GAATATATGA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
36 35 0.85
38 6 0.15
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (36 bp):
CAATCTTAGATATGATATGCAATCTTAGATATGATA
Found at i:21237206 original size:19 final size:19
Alignment explanation
Indices: 21237114--21237200 Score: 151
Period size: 19 Copynumber: 4.7 Consensus size: 19
21237104 AATCTTTAAA
21237114 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
21237133 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
21237152 GATA--CAATGTTAGATAT
1 GATATGCAATCTTAGATAT
21237169 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
21237188 GATATGCAATCTT
1 GATATGCAATCTT
21237201 GAATATATGA
Statistics
Matches: 64, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
17 16 0.25
19 48 0.75
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:21252149 original size:30 final size:30
Alignment explanation
Indices: 21252114--21252180 Score: 98
Period size: 30 Copynumber: 2.2 Consensus size: 30
21252104 TGTGTCTCAA
*
21252114 CCGTGTGAGGGACACGGGCGTGTGGCCCGG
1 CCGTGTGAGGGACACGGGCATGTGGCCCGG
* * *
21252144 TCGTGTGAGGGACATGGGCATGTGGCCCTG
1 CCGTGTGAGGGACACGGGCATGTGGCCCGG
21252174 CCGTGTG
1 CCGTGTG
21252181 GTTCAATTTG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.10, C:0.24, G:0.46, T:0.19
Consensus pattern (30 bp):
CCGTGTGAGGGACACGGGCATGTGGCCCGG
Found at i:21254182 original size:6 final size:6
Alignment explanation
Indices: 21254182--21254324 Score: 124
Period size: 6 Copynumber: 24.7 Consensus size: 6
21254172 TTATTTTTAT
* *
21254182 TTTTTG -TTTTG CTTTTG CTTTTG TTTTTG TTTTTG -TTTTG -TTTTG
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG
* * * *
21254227 TTTTTCA TTTCTT- TTTTT- TCTTTT- TCTTT- TTTTTG TTTTATT TTTTTA
1 TTTTT-G TTT-TTG TTTTTG T-TTTTG TTTTTG TTTTTG TTTT-TG TTTTTG
*
21254275 TTTTT- TATTT- TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG
21254321 TTTT
1 TTTT
21254325 ATTTTATTAT
Statistics
Matches: 121, Mismatches: 8, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
5 33 0.27
6 78 0.64
7 8 0.07
8 2 0.02
ACGTcount: A:0.03, C:0.04, G:0.10, T:0.83
Consensus pattern (6 bp):
TTTTTG
Found at i:21254203 original size:17 final size:15
Alignment explanation
Indices: 21254183--21254329 Score: 79
Period size: 15 Copynumber: 9.3 Consensus size: 15
21254173 TATTTTTATT
21254183 TTTTGTTTTGCTTTTG
1 TTTTGTTTTG-TTTTG
21254199 CTTTTGTTTTTGTTTTTG
1 -TTTTG-TTTTG-TTTTG
21254217 TTTTGTTTTGTTTT-
1 TTTTGTTTTGTTTTG
* *
21254231 TCATTTCTTTT-TTTTC
1 T--TTTGTTTTGTTTTG
*
21254247 TTTT-TCTTTTTTTTG
1 TTTTGT-TTTGTTTTG
* *
21254262 TTTTATTTT-TTTATT
1 TTTTGTTTTGTTT-TG
*
21254277 TTTTATTTT-TTTTG
1 TTTTGTTTTGTTTTG
21254291 TTTTTGTTTTTGTTTTTG
1 -TTTTG-TTTTG-TTTTG
*
21254309 TTTTTGTTTTTGTTTTA
1 -TTTTG-TTTTGTTTTG
21254326 TTTT
1 TTTT
21254330 ATTATGCATT
Statistics
Matches: 111, Mismatches: 7, Indels: 25
0.78 0.05 0.17
Matches are distributed among these distances:
13 1 0.01
14 11 0.10
15 36 0.32
16 22 0.20
17 14 0.13
18 27 0.24
ACGTcount: A:0.03, C:0.04, G:0.10, T:0.82
Consensus pattern (15 bp):
TTTTGTTTTGTTTTG
Found at i:21254215 original size:1 final size:1
Alignment explanation
Indices: 21254200--21254329 Score: 71
Period size: 1 Copynumber: 130.0 Consensus size: 1
21254190 TTGCTTTTGC
* * * * * ** * * * *
21254200 TTTTGTTTTTGTTTTTGTTTTGTTTTGTTTTTCATTTCTTTTTTTTCTTTTTCTTTTTTTTGTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * * * * * *
21254265 TATTTTTTTATTTTTTATTTTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTATTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
21254330 ATTATGCATT
Statistics
Matches: 88, Mismatches: 41, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
1 88 1.00
ACGTcount: A:0.04, C:0.03, G:0.09, T:0.84
Consensus pattern (1 bp):
T
Found at i:21254329 original size:29 final size:28
Alignment explanation
Indices: 21254176--21254329 Score: 127
Period size: 29 Copynumber: 5.3 Consensus size: 28
21254166 TTTTATTTAT
* *
21254176 TTTTATTTTTTGTTTTGCTTTTGCTTTTG
1 TTTTATTTTTT-TTTTGTTTTTGTTTTTG
*
21254205 TTTT-TGTTTTTGTTTTG-TTTTGTTTTTC
1 TTTTAT-TTTTT-TTTTGTTTTTGTTTTTG
* * *
21254233 ATTTCTTTTTTTTCTT-TTTCTTTTTTTTG
1 TTTTATTTTTTTT-TTGTTT-TTGTTTTTG
*
21254262 TTTTATTTTTTTATTT-TTTATTTTTTTTG
1 TTTTATTTTTTT-TTTGTTT-TTGTTTTTG
*
21254291 TTTTTGTTTTTGTTTTTGTTTTTGTTTTTG
1 -TTTTATTTTT-TTTTTGTTTTTGTTTTTG
21254321 TTTTATTTT
1 TTTTATTTT
21254330 ATTATGCATT
Statistics
Matches: 105, Mismatches: 11, Indels: 18
0.78 0.08 0.13
Matches are distributed among these distances:
27 2 0.02
28 22 0.21
29 55 0.52
30 21 0.20
31 5 0.05
ACGTcount: A:0.04, C:0.04, G:0.10, T:0.82
Consensus pattern (28 bp):
TTTTATTTTTTTTTTGTTTTTGTTTTTG
Found at i:21254466 original size:15 final size:15
Alignment explanation
Indices: 21254446--21254476 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
21254436 GCACTTCATT
*
21254446 TAGAATCGGCGATGA
1 TAGAATCGGCCATGA
21254461 TAGAATCGGCCATGA
1 TAGAATCGGCCATGA
21254476 T
1 T
21254477 TCCAAATTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.23
Consensus pattern (15 bp):
TAGAATCGGCCATGA
Found at i:21254638 original size:23 final size:22
Alignment explanation
Indices: 21254561--21254692 Score: 102
Period size: 23 Copynumber: 5.7 Consensus size: 22
21254551 ACTTGGTTGA
*
21254561 AGGGTATAGTGGTTGTGTTTGG
1 AGGGTATATTGGTTGTGTTTGG
* * * *
21254583 ATGGTATACTTGGTTTTGTTCGA
1 AGGGTATA-TTGGTTGTGTTTGG
*
21254606 AGGTTATATATATGGTTGTGTTTGG
1 AGG--GTATAT-TGGTTGTGTTTGG
* * *
21254631 CGGGTATATTTGGTTGTGTCTAG
1 AGGGTATA-TTGGTTGTGTTTGG
* *
21254654 AAGGTACATGTGGTTGTGTTTGG
1 AGGGTATAT-TGGTTGTGTTTGG
*
21254677 AGGGTAAATTGGTTGT
1 AGGGTATATTGGTTGT
21254693 CTTCAGTGGG
Statistics
Matches: 83, Mismatches: 21, Indels: 12
0.72 0.18 0.10
Matches are distributed among these distances:
22 15 0.18
23 50 0.60
24 2 0.02
25 16 0.19
ACGTcount: A:0.17, C:0.04, G:0.36, T:0.43
Consensus pattern (22 bp):
AGGGTATATTGGTTGTGTTTGG
Found at i:21254682 original size:46 final size:46
Alignment explanation
Indices: 21254569--21254692 Score: 135
Period size: 48 Copynumber: 2.7 Consensus size: 46
21254559 GAAGGGTATA
* * * * *
21254569 GTGGTTGTGTTTGGATGGTATACTTGGTTTTGTTCGAAGGTTATATAT
1 GTGGTTGTGTTTGGAGGGTATAATTGGTTGTGTTAGAAGG-T-TACAT
* * *
21254617 ATGGTTGTGTTTGGCGGGTATATTTGGTTGTGTCTAGAAGG-TACAT
1 GTGGTTGTGTTTGGAGGGTATAATTGGTTGTGT-TAGAAGGTTACAT
21254663 GTGGTTGTGTTTGGAGGGTA-AATTGGTTGT
1 GTGGTTGTGTTTGGAGGGTATAATTGGTTGT
21254693 CTTCAGTGGG
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
45 9 0.14
46 22 0.34
48 28 0.43
49 6 0.09
ACGTcount: A:0.16, C:0.04, G:0.35, T:0.44
Consensus pattern (46 bp):
GTGGTTGTGTTTGGAGGGTATAATTGGTTGTGTTAGAAGGTTACAT
Found at i:21254871 original size:18 final size:18
Alignment explanation
Indices: 21254848--21254882 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
21254838 CATACCATGA
21254848 TTAATTGTGATAGTATGC
1 TTAATTGTGATAGTATGC
21254866 TTAATTGTGATAGTATG
1 TTAATTGTGATAGTATG
21254883 TTTTCTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.03, G:0.23, T:0.46
Consensus pattern (18 bp):
TTAATTGTGATAGTATGC
Found at i:21257709 original size:26 final size:26
Alignment explanation
Indices: 21257673--21257730 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
21257663 AGCCTGCACT
21257673 TAGTACTACACATGCGACCAATTATC
1 TAGTACTACACATGCGACCAATTATC
*
21257699 TAGTACTACACATGTGACCAATTATC
1 TAGTACTACACATGCGACCAATTATC
*
21257725 TGGTAC
1 TAGTAC
21257731 ACGTAGTAGC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (26 bp):
TAGTACTACACATGCGACCAATTATC
Found at i:21257756 original size:49 final size:49
Alignment explanation
Indices: 21257699--21257916 Score: 292
Period size: 49 Copynumber: 4.4 Consensus size: 49
21257689 ACCAATTATC
* * **
21257699 TAGTACTACACATGTGACCAATTATCTGGTACACGTAGTAGCCTGTGCT
1 TAGTACTACACACGTGACCAATTATCTGGTACACATAGTAGCCTGCACT
** *
21257748 TAGTACTACACACGTGACCTAACCATCTGATACACATAGTAGCCTGCACT
1 TAGTACTACACACGTGACC-AATTATCTGGTACACATAGTAGCCTGCACT
* * *
21257798 TAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTACTACACACGTGA-CCAA-TTATCTGGTACACATAGTAGCCTGCACT
* * *
21257849 TAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGCCTGCACT
1 TAGTACTACACACGTGACCAATTATCTGGTACACATAGTAGCCTGCACT
21257898 TAGTACTACACACGTGACC
1 TAGTACTACACACGTGACC
21257917 TCACAATAGA
Statistics
Matches: 145, Mismatches: 21, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
49 60 0.41
50 46 0.32
51 39 0.27
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTACTACACACGTGACCAATTATCTGGTACACATAGTAGCCTGCACT
Found at i:21257907 original size:100 final size:99
Alignment explanation
Indices: 21257699--21257916 Score: 294
Period size: 100 Copynumber: 2.2 Consensus size: 99
21257689 ACCAATTATC
* * * ** *
21257699 TAGTACTACACATGTGACCAATTATCTGGTACACGTAGTAGCCTGTGCTTAGTACTACACACGTG
1 TAGTACTACACACGTGACCAATTATCGGGTACACATAGTAGCCTGCACTTAGTACTACACACGCG
21257764 ACCTAACCATCTGATACACATAGTAGCCTGCACT
66 ACCTAACCATCTGATACACATAGTAGCCTGCACT
* * *
21257798 TAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATG
1 TAGTACTACACACGTGA-CCAA-TTATCGGGTACACATAGTAGCCTGCACTTAGTACTACACACG
** * *
21257863 CGACC-AATTATCTGGTACACGTAGTAGCCTGCACT
64 CGACCTAACCATCTGATACACATAGTAGCCTGCACT
21257898 TAGTACTACACACGTGACC
1 TAGTACTACACACGTGACC
21257917 TCACAATAGA
Statistics
Matches: 103, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
99 17 0.17
100 46 0.45
101 40 0.39
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (99 bp):
TAGTACTACACACGTGACCAATTATCGGGTACACATAGTAGCCTGCACTTAGTACTACACACGCG
ACCTAACCATCTGATACACATAGTAGCCTGCACT
Found at i:21258323 original size:13 final size:13
Alignment explanation
Indices: 21258284--21258347 Score: 67
Period size: 13 Copynumber: 4.9 Consensus size: 13
21258274 AGTTCTTCAT
21258284 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
21258297 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
*
21258310 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
*
21258323 TACTTTT-AAGAAG
1 TGCTTTTGAA-AAG
*
21258336 TGCTTTGGAAAA
1 TGCTTTTGAAAA
21258348 ATTTAAGTGT
Statistics
Matches: 40, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
12 1 0.03
13 37 0.93
14 2 0.05
ACGTcount: A:0.31, C:0.08, G:0.27, T:0.34
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:21259326 original size:26 final size:26
Alignment explanation
Indices: 21259297--21259404 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
21259287 TGGTACAAAT
*
21259297 TGATAATGGGTTAGATAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
21259323 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
21259349 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
21259375 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
21259401 TGAT
1 TGAT
21259405 GGGCATTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.33, C:0.06, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:21262843 original size:40 final size:40
Alignment explanation
Indices: 21262769--21262951 Score: 216
Period size: 39 Copynumber: 4.7 Consensus size: 40
21262759 GCTACTCGTT
*
21262769 CAAATGCCTTC-GGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
21262808 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
21262848 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
21262887 CAAATGCCTTC--GATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
21262927 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
21262952 CATCATTCGA
Statistics
Matches: 124, Mismatches: 13, Indels: 13
0.83 0.09 0.09
Matches are distributed among these distances:
37 1 0.01
39 65 0.52
40 54 0.44
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:21262945 original size:79 final size:80
Alignment explanation
Indices: 21262769--21262951 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 80
21262759 GCTACTCGTT
* *
21262769 CAAATGCCTTC-GGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGACTTAACCCG
* *
21262832 GATTTAGTAACTCGCAC
64 GATATAGTAACTAGCAC
* **
21262849 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GATCTTAGTCCGG
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGA-CTTAACCCGG
* *
21262911 ATATGGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
21262927 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
21262952 CATCATTCGA
Statistics
Matches: 88, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
77 2 0.02
78 27 0.31
79 53 0.60
80 6 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGA
TATAGTAACTAGCAC
Done.