Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 73 of 250
Found at i:23057197 original size:86 final size:86
Alignment explanation
Indices: 23057040--23057207 Score: 200
Period size: 85 Copynumber: 2.0 Consensus size: 86
23057030 CAGAAAGCTC
* * * *
23057040 ATACAATGCCAACGTTCTAGACGTGGTCTTACACGTAATCAAATATCAATGCCACTGTCCCAGAT
1 ATACAATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATATCAATGCCAATGTCCCAGAT
23057105 AGGGTCTTACAC-AAAATCAA
66 AGGGTCTTACACGAAAATCAA
* * * *
23057125 ATACGATGCCAATGTCCCAGACATGGTCTTACATGTAAATCATAA-ATCGATGCCAATGTCCCA-
1 ATACAATGCCAACGTCCCAGACATGGTCTTACACGT-AATCA-AATATCAATGCCAATGTCCCAG
23057188 A-ACGTGGTCTTACACGAAAA
64 ATA-G-GGTCTTACACGAAAA
23057208 CACATATCGG
Statistics
Matches: 70, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
84 1 0.01
85 32 0.46
86 31 0.44
87 6 0.09
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.24
Consensus pattern (86 bp):
ATACAATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATATCAATGCCAATGTCCCAGAT
AGGGTCTTACACGAAAATCAA
Found at i:23061883 original size:30 final size:30
Alignment explanation
Indices: 23061849--23061911 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
23061839 ACTTATTTTA
23061849 TTGTTAATTTTGTTACTATTTTAAAGACAT
1 TTGTTAATTTTGTTACTATTTTAAAGACAT
* * *
23061879 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTACTATTTTAAAGACAT
23061909 TTG
1 TTG
23061912 CTTATTAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.25, C:0.05, G:0.14, T:0.56
Consensus pattern (30 bp):
TTGTTAATTTTGTTACTATTTTAAAGACAT
Found at i:23064765 original size:27 final size:27
Alignment explanation
Indices: 23064735--23064807 Score: 101
Period size: 27 Copynumber: 2.7 Consensus size: 27
23064725 GGATAAGTGG
23064735 CAAAGACACTAGAACAGTAAAACATGA
1 CAAAGACACTAGAACAGTAAAACATGA
* * *
23064762 CAAAGACACTAGAATAGTAAAACGTGG
1 CAAAGACACTAGAACAGTAAAACATGA
* *
23064789 CAAAGCCACTAGTACAGTA
1 CAAAGACACTAGAACAGTA
23064808 CTTCCTCCGA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.49, C:0.19, G:0.18, T:0.14
Consensus pattern (27 bp):
CAAAGACACTAGAACAGTAAAACATGA
Found at i:23069395 original size:40 final size:40
Alignment explanation
Indices: 23069333--23069537 Score: 256
Period size: 40 Copynumber: 5.2 Consensus size: 40
23069323 AAACCAAGTA
* * *
23069333 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
23069372 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
23069412 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAGTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
23069452 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* * *
23069492 CCTTCGGGACTTAGCCCGGA-ATTAGTCATTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
23069532 CCTTCG
1 CCTTCG
23069538 TTGTCATCCG
Statistics
Matches: 151, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 14 0.09
40 137 0.91
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:23073631 original size:34 final size:33
Alignment explanation
Indices: 23073582--23073673 Score: 102
Period size: 32 Copynumber: 2.8 Consensus size: 33
23073572 CATACACATT
*
23073582 TATATATGTAT-TATAATA-AATCTC-TAGATGCA
1 TATATATGTATATATAATAGAA-C-CATAGAGGCA
*
23073614 TATATATAGTATATATAACAGAACCATAGAGGCA
1 TATATAT-GTATATATAATAGAACCATAGAGGCA
*
23073648 TATATATGT-TATATAATAGGACCATA
1 TATATATGTATATATAATAGAACCATA
23073674 TATGTATGTA
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
32 22 0.42
33 7 0.13
34 21 0.40
35 2 0.04
ACGTcount: A:0.43, C:0.10, G:0.12, T:0.35
Consensus pattern (33 bp):
TATATATGTATATATAATAGAACCATAGAGGCA
Found at i:23081225 original size:24 final size:24
Alignment explanation
Indices: 23081187--23081260 Score: 112
Period size: 24 Copynumber: 3.1 Consensus size: 24
23081177 CATGTATTGA
*
23081187 CATTCAAATCAGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
* *
23081211 CATTCAATTTCGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
*
23081235 CATTCAAATCCGCACACTTAGTGC
1 CATTCAAATCCGCACACATAGTGC
23081259 CA
1 CA
23081261 ATGTTGACCC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.32, C:0.31, G:0.12, T:0.24
Consensus pattern (24 bp):
CATTCAAATCCGCACACATAGTGC
Found at i:23083737 original size:46 final size:46
Alignment explanation
Indices: 23083670--23083841 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
23083660 AACCCGCCCC
*
23083670 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGCCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCCGTTCGCATCCA
* * *
23083716 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-G--GCC--GTTCGCATCCA
* * * *
23083764 TCA-TGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCCGTTCGCATCCA
23083809 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
23083842 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 57 0.55
47 27 0.26
48 2 0.02
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCCGTTCGCATCCA
Found at i:23083782 original size:93 final size:93
Alignment explanation
Indices: 23083674--23083845 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
23083664 CGCCCCTAAG
* * *
23083674 TGAACTCGGACTCAACTCAACGAGCTCGGCCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
23083739 ATGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
*
23083767 TGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
23083832 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
23083846 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:23090800 original size:46 final size:46
Alignment explanation
Indices: 23090733--23090904 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
23090723 AACCCGCCCC
*
23090733 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGCCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCCGTTCGCATCCA
* * * *
23090779 TAAGTGAACTCGGGCTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-G--GCC--GTTCGCATCCA
* * * * *
23090827 TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCCGTTCGCATCCA
23090872 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
23090905 ATGCTCAACC
Statistics
Matches: 100, Mismatches: 17, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 55 0.55
47 25 0.25
48 2 0.02
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCCGTTCGCATCCA
Found at i:23090845 original size:93 final size:93
Alignment explanation
Indices: 23090738--23090908 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
23090728 GCCCCTAAGT
* * * *
23090738 GAACTCGGACTCAACTCAACGAGCTCGGCCGTTCGCATCCATAAGTGAACTCGGGCTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
23090803 TGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
23090831 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
23090896 CGAGTTCGGATGC
66 CGAGTTCGGATGC
23090909 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:23092710 original size:58 final size:58
Alignment explanation
Indices: 23092642--23092753 Score: 215
Period size: 58 Copynumber: 1.9 Consensus size: 58
23092632 CTTCGACCCC
23092642 GTGCTTAAGCCACAGTACCTTCACTAATGAGATTTTCTTATTTCATAGTTCTTTACCT
1 GTGCTTAAGCCACAGTACCTTCACTAATGAGATTTTCTTATTTCATAGTTCTTTACCT
*
23092700 GTGCTTAAGCCACAGTACCTTCACTAATGAGATTTTCTTATTTCGTAGTTCTTT
1 GTGCTTAAGCCACAGTACCTTCACTAATGAGATTTTCTTATTTCATAGTTCTTT
23092754 TACTTCACGT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.23, C:0.21, G:0.13, T:0.42
Consensus pattern (58 bp):
GTGCTTAAGCCACAGTACCTTCACTAATGAGATTTTCTTATTTCATAGTTCTTTACCT
Found at i:23098581 original size:24 final size:24
Alignment explanation
Indices: 23098453--23098589 Score: 80
Period size: 24 Copynumber: 5.7 Consensus size: 24
23098443 TCATCAACCG
* **
23098453 ATTTCGCACACATAGTGCTAAACA
1 ATTTCGCACACATAGTGCCATTCA
* * *
23098477 AGTTCGCACACATAGTGCCATGCT
1 ATTTCGCACACATAGTGCCATTCA
*** *
23098501 ACACCGCACACATAGTGCC-TTGA
1 ATTTCGCACACATAGTGCCATTCA
* * * ** * *
23098524 AGATTCACTCATGTATTGACATTCA
1 A-TTTCGCACACATAGTGCCATTCA
*
23098549 A-ATCAGCACACATAGTGCCATTCA
1 ATTTC-GCACACATAGTGCCATTCA
23098573 ATTTCGCACACATAGTG
1 ATTTCGCACACATAGTG
23098590 TGACAGCCCT
Statistics
Matches: 80, Mismatches: 29, Indels: 8
0.68 0.25 0.07
Matches are distributed among these distances:
23 4 0.05
24 70 0.88
25 6 0.08
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (24 bp):
ATTTCGCACACATAGTGCCATTCA
Found at i:23100989 original size:47 final size:47
Alignment explanation
Indices: 23100937--23101344 Score: 618
Period size: 47 Copynumber: 8.6 Consensus size: 47
23100927 GATAATTGTG
* * *
23100937 ATGTGAATGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
23100984 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
23101031 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
23101078 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
23101125 ATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG----TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
23101176 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
23101225 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
23101272 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
23101319 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
23101345 TCCCGAAGGG
Statistics
Matches: 334, Mismatches: 23, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
47 240 0.72
49 48 0.14
51 46 0.14
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:23101245 original size:194 final size:192
Alignment explanation
Indices: 23100946--23101333 Score: 659
Period size: 194 Copynumber: 2.0 Consensus size: 192
23100936 GATGTGAATG
23100946 TATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
1 TATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
*
23101011 CCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
66 CCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * *
23101076 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
131 GAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTA
*
23101138 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 TATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
* * *
23101203 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTG
64 GGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * *
23101268 ATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTA
129 ATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTA
23101332 TA
1 TA
23101334 AATGTGATAA
Statistics
Matches: 183, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
192 48 0.26
194 135 0.74
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (192 bp):
TATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
CCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
GAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTA
Found at i:23106094 original size:40 final size:39
Alignment explanation
Indices: 23106050--23106162 Score: 120
Period size: 40 Copynumber: 2.8 Consensus size: 39
23106040 CGGAATTTGG
* *
23106050 CTCGGATGTAACAACCAGCACGAATGCCTTCGGGACTTAA
1 CTCGGTTGTAATAACCAGCAC-AATGCCTTCGGGACTTAA
* *
23106090 CTCGGTTAG-AATAACCCGCACAAATGCCTTCGGGAGTTAA
1 CTCGGTT-GTAATAACCAGCAC-AATGCCTTCGGGACTTAA
* * *
23106130 CCCGGTTATAATAACTAGCACAATTGCCTTCGG
1 CTCGGTTGTAATAACCAGCACAA-TGCCTTCGG
23106163 ATCTTAGTTT
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
39 2 0.03
40 58 0.95
41 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (39 bp):
CTCGGTTGTAATAACCAGCACAATGCCTTCGGGACTTAA
Found at i:23106185 original size:40 final size:40
Alignment explanation
Indices: 23106136--23106218 Score: 139
Period size: 40 Copynumber: 2.1 Consensus size: 40
23106126 TTAACCCGGT
* *
23106136 TATAATAACTAGCACAATTGCCTTCGGATCTTAGTTTGGA
1 TATAATAACTAGCACAAATGCCTTCGGATCTTAGTCTGGA
*
23106176 TATAGTAACTAGCACAAATGCCTTCGGATCTTAGTCTGGA
1 TATAATAACTAGCACAAATGCCTTCGGATCTTAGTCTGGA
23106216 TAT
1 TAT
23106219 CATCCGAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (40 bp):
TATAATAACTAGCACAAATGCCTTCGGATCTTAGTCTGGA
Found at i:23115773 original size:27 final size:27
Alignment explanation
Indices: 23115742--23115799 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
23115732 ACCCTTTAAT
* *
23115742 TGATAAAATGACTGTTATGCCCTTATG
1 TGATAAAATGACTCTTATGCCCCTATG
23115769 TGATAAAATGACTCTTATGCCCCTATG
1 TGATAAAATGACTCTTATGCCCCTATG
23115796 TGAT
1 TGAT
23115800 GTATAATTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.36
Consensus pattern (27 bp):
TGATAAAATGACTCTTATGCCCCTATG
Found at i:23120252 original size:43 final size:43
Alignment explanation
Indices: 23120190--23120401 Score: 289
Period size: 43 Copynumber: 4.9 Consensus size: 43
23120180 ATGATATGTA
* *
23120190 ATTACGTGTATGACAACGTCTGGGACGTTGGCATCGATATATG
1 ATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATATATG
* *
23120233 ATTACGTGTAAGACCACGTCTGGGACATTGGCATCGATATGTG
1 ATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATATATG
*
23120276 ATTACGTGTAAGACCACGTCTGGGACGTTGGCATTGATATATG
1 ATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATATATG
* * * *
23120319 ATTACATGTAAGACCACGCCTGGGACATTGGCATCGATATGTG
1 ATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATATATG
* * * * * *
23120362 ATTATGAGTAAGACCACGTTTAGTACGTTGACATCGATAT
1 ATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATAT
23120402 GTGTGTGTGC
Statistics
Matches: 148, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 148 1.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.29
Consensus pattern (43 bp):
ATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATATATG
Found at i:23120329 original size:86 final size:86
Alignment explanation
Indices: 23120182--23120401 Score: 332
Period size: 86 Copynumber: 2.6 Consensus size: 86
23120172 TAGGATTTAT
* * * *
23120182 GATATGTAATTACGTGTATGACAACGTCTGGGACGTTGGCATCGATATATGATTACGTGTAAGAC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATATATGATTACATGTAAGAC
*
23120247 CACGTCTGGGACATTGGCATC
66 CACGCCTGGGACATTGGCATC
*
23120268 GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATTGATATATGATTACATGTAAGAC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATATATGATTACATGTAAGAC
23120333 CACGCCTGGGACATTGGCATC
66 CACGCCTGGGACATTGGCATC
* * * * * *
23120354 GATATGTGATTATGAGTAAGACCACGTTTAGTACGTTGACATCGATAT
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATAT
23120402 GTGTGTGTGC
Statistics
Matches: 121, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
86 121 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (86 bp):
GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATATATGATTACATGTAAGAC
CACGCCTGGGACATTGGCATC
Found at i:23120416 original size:43 final size:43
Alignment explanation
Indices: 23120350--23120450 Score: 141
Period size: 43 Copynumber: 2.3 Consensus size: 43
23120340 GGGACATTGG
* *
23120350 CATCGATATGTGATTATGAGTAAGACCACGTTTAGTACGTTGA
1 CATCGATATGTGATTATGAGTAAGACCACATTTAATACGTTGA
* *
23120393 CATCGATATGTG-TGTGTGCGTAAGACCACATTTAATACGTTGA
1 CATCGATATGTGAT-TATGAGTAAGACCACATTTAATACGTTGA
*
23120436 CATCGATATATGATT
1 CATCGATATGTGATT
23120451 TTGATATGTG
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
42 1 0.02
43 49 0.96
44 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.34
Consensus pattern (43 bp):
CATCGATATGTGATTATGAGTAAGACCACATTTAATACGTTGA
Found at i:23120416 original size:129 final size:129
Alignment explanation
Indices: 23120181--23120421 Score: 304
Period size: 129 Copynumber: 1.9 Consensus size: 129
23120171 ATAGGATTTA
* * * * * *
23120181 TGATATGTAATTACGTGTATGACAACGTCTGGGACGTTGGCATCGATATATGATTACGTGTAAGA
1 TGATATATAATTACATGTAAGACAACGCCTGGGACATTGGCATCGATATATGATTACGAGTAAGA
* * *
23120246 CCACGTCTGGGACATTGGCATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
66 CCACGTCTAGGACATTGACATCGATATGTGATTACGCGTAAGACCACGTCTGGGACGTTGGCAT
* * * *
23120310 TGATATATGATTACATGTAAGACCACGCCTGGGACATTGGCATCGATATGTGATTATGAGTAAGA
1 TGATATATAATTACATGTAAGACAACGCCTGGGACATTGGCATCGATATATGATTACGAGTAAGA
* * * **
23120375 CCACGTTTAGTACGTTGACATCGATATGTG-TGTGTGCGTAAGACCAC
66 CCACGTCTAGGACATTGACATCGATATGTGAT-TACGCGTAAGACCAC
23120422 ATTTAATACG
Statistics
Matches: 93, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
128 1 0.01
129 92 0.99
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (129 bp):
TGATATATAATTACATGTAAGACAACGCCTGGGACATTGGCATCGATATATGATTACGAGTAAGA
CCACGTCTAGGACATTGACATCGATATGTGATTACGCGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:23120433 original size:129 final size:129
Alignment explanation
Indices: 23120181--23120450 Score: 299
Period size: 129 Copynumber: 2.1 Consensus size: 129
23120171 ATAGGATTTA
* * * * * * *
23120181 TGATATGTAATTACGTGTATGACAACGTCTGGGACGTTGGCATCGATATATGATTACGTGTAAGA
1 TGATATATGATTACATGTAAGACAACGCCTGGGACATTGGCATCGATATATGATTACGAGTAAGA
* * * * ** *
23120246 CCACGTCTGGGACATTGGCATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
66 CCACGTCTAGGACATTGACATCGATATGTGATTACGCGTAAGACCACATCTAAGACGTTGACAT
* * *
23120310 TGATATATGATTACATGTAAGACCACGCCTGGGACATTGGCATCGATATGTGATTATGAGTAAGA
1 TGATATATGATTACATGTAAGACAACGCCTGGGACATTGGCATCGATATATGATTACGAGTAAGA
* * * ** * *
23120375 CCACGTTTAGTACGTTGACATCGATATGTG-TGTGTGCGTAAGACCACATTTAATACGTTGACAT
66 CCACGTCTAGGACATTGACATCGATATGTGAT-TACGCGTAAGACCACATCTAAGACGTTGACAT
*
23120439 CGATATATGATT
1 TGATATATGATT
23120451 TTGATATGTG
Statistics
Matches: 115, Mismatches: 25, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
128 1 0.01
129 114 0.99
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (129 bp):
TGATATATGATTACATGTAAGACAACGCCTGGGACATTGGCATCGATATATGATTACGAGTAAGA
CCACGTCTAGGACATTGACATCGATATGTGATTACGCGTAAGACCACATCTAAGACGTTGACAT
Found at i:23125317 original size:17 final size:17
Alignment explanation
Indices: 23125292--23125332 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
23125282 GAAAACATAT
* *
23125292 ATGACAATGCCCGATCA
1 ATGATAATGCCCGATAA
23125309 ATGATAATGCCCGATAA
1 ATGATAATGCCCGATAA
23125326 ATGATAA
1 ATGATAA
23125333 AAATGTTACT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (17 bp):
ATGATAATGCCCGATAA
Found at i:23127957 original size:48 final size:48
Alignment explanation
Indices: 23127905--23128176 Score: 346
Period size: 48 Copynumber: 5.7 Consensus size: 48
23127895 TCATGTTAGT
* * *
23127905 GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCACACATATCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAC
* * * *
23127953 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGTTCACATATCCAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAC
* *
23128001 GTCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAC
*
23128049 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAC
** * * * * * * * *
23128097 GATGATGCCATATCCCAGATATGGTCTTATACGGGGTCTCATATCTAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAC
* *
23128145 GTCAATGCCATGTCCCAGACATGGTCTTACAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACAC
23128177 GGGACCTTAT
Statistics
Matches: 193, Mismatches: 31, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 193 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAC
Found at i:23128075 original size:144 final size:144
Alignment explanation
Indices: 23127905--23128176 Score: 400
Period size: 144 Copynumber: 1.9 Consensus size: 144
23127895 TCATGTTAGT
* * * *
23127905 GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCACACATATCAACGCCGACGCCATGTCCCA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACGACGACGCCATATCCCA
* * *
23127970 GACATGGTCTTACACTGGTTCACATATCCATGTCGATGCCATGTCCCAAACATGGTCTTACACTG
66 GACATGGTCTTACACGGGGTCACATATCCATGTCAATGCCATGTCCCAAACATGGTCTTACACTG
23128035 GCTCACATATCAAC
131 GCTCACATATCAAC
* * * *
23128049 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCAACGATGATGCCATATCCCA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACGACGACGCCATATCCCA
* * * * *
23128114 GATATGGTCTTATACGGGGTCTCATATCTATGTCAATGCCATGTCCCAGACATGGTCTTACAC
66 GACATGGTCTTACACGGGGTCACATATCCATGTCAATGCCATGTCCCAAACATGGTCTTACAC
23128177 GGGACCTTAT
Statistics
Matches: 112, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
144 112 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (144 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACGACGACGCCATATCCCA
GACATGGTCTTACACGGGGTCACATATCCATGTCAATGCCATGTCCCAAACATGGTCTTACACTG
GCTCACATATCAAC
Found at i:23128257 original size:6 final size:6
Alignment explanation
Indices: 23128246--23128271 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
23128236 AGACAAATAA
23128246 ATATAC ATATAC ATATAC ATATAC AT
1 ATATAC ATATAC ATATAC ATATAC AT
23128272 TTCATGCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (6 bp):
ATATAC
Found at i:23137439 original size:46 final size:44
Alignment explanation
Indices: 23137365--23137536 Score: 168
Period size: 46 Copynumber: 3.8 Consensus size: 44
23137355 GTAACCCGCC
* *
23137365 CATAAGTGAACTCGGACTCAACTTAACGAGCTCGGGCGTTCGCAT
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCAT
* * *
23137410 GCATGAGTGATCTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 -CATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCAT
* * * *
23137460 C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-GTTGCAT
23137503 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
1 -CATAAGTGAACTCGGACTCAACTCAACGAGTTC
23137537 AGATGCTCAA
Statistics
Matches: 105, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 57 0.54
47 27 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (44 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCAT
Found at i:23137531 original size:93 final size:93
Alignment explanation
Indices: 23137372--23137542 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
23137362 GCCCATAAGT
* * * * * *
23137372 GAACTCGGACTCAACTTAACGAGCTCGGGCGTTCGCATGCATGAGTGATCTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
23137437 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCAGATGCCTAGTTACATCTCAC
* *
23137465 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
23137530 CGAGTTCAGATGC
66 CGAGTTCAGATGC
23137543 TCAACCATCC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:23144853 original size:145 final size:148
Alignment explanation
Indices: 23144585--23144872 Score: 363
Period size: 145 Copynumber: 2.0 Consensus size: 148
23144575 CATAGGATAA
* * * *
23144585 GGTGCTGACGCCATGTCCCGGACATGGTCTTACACTGGCTCACACATCAAAGTCGATGCCATGTC
1 GGTGCAGACGCCATGTCCCAGACATGGTCTTACACTGGCACACACATCAAAGCCGATGCCATGTC
* * * *
23144650 CCAAACATGGTCTTACACTGACTCTAGTATATCGAGGTCGATGTCATGTCCCAAACATGGTCTTA
66 CCAAACATAGTCTTACACTGACTCCAGTATATCGAGGTCAATGCCATGTCCCAAACATGGTCTTA
*
23144715 CACTGGCTCTCATCTATC
131 CACTAGCTCTCATCTATC
* * *
23144733 GGTGCAGATGCCATGTCCCAGACATGGTTTTACACT-G-ACACATATC-AAGCCGATGCCATG-C
1 GGTGCAGACGCCATGTCCCAGACATGGTCTTACACTGGCACACACATCAAAGCCGATGCCATGTC
* * * *
23144794 CCTAGACATAGTCTTACACT-AGCTCCCA-TATCTCGAGGTCAATGCCATGTCCTAGACATGGTC
66 CC-AAACATAGTCTTACACTGA-CT-CCAGTATATCGAGGTCAATGCCATGTCCCAAACATGGTC
23144857 TTACACTAGCTCTCAT
128 TTACACTAGCTCTCAT
23144873 ATCTTAAGGC
Statistics
Matches: 121, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
144 4 0.03
145 75 0.62
146 9 0.07
147 1 0.01
148 32 0.26
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (148 bp):
GGTGCAGACGCCATGTCCCAGACATGGTCTTACACTGGCACACACATCAAAGCCGATGCCATGTC
CCAAACATAGTCTTACACTGACTCCAGTATATCGAGGTCAATGCCATGTCCCAAACATGGTCTTA
CACTAGCTCTCATCTATC
Found at i:23144893 original size:145 final size:148
Alignment explanation
Indices: 23144594--23144913 Score: 350
Period size: 145 Copynumber: 2.2 Consensus size: 148
23144584 AGGTGCTGAC
* * * *
23144594 GCCATGTCCCGGACATGGTCTTACACTGGCTCACACATCAAAGTCGATGCCATGTCCCAAACATG
1 GCCATGTCCCAGACATGGTCTTACACTGGCACACACATCAAAGCCGATGCCATGTCCCAAACATA
* * * *
23144659 GTCTTACACTGACTCTAGTATATCGAGGTCGATGTCATGTCCCAAACATGGTCTTACACTGGCTC
66 GTCTTACACTGACTCCAGTATATCGAGGTCAATGCCATGTCCCAAACATGGTCTTACACTAGCTC
**
23144724 TCATCTATCGGTGCAGAT
131 TCATCTATAAGTGCAGAT
* * *
23144742 GCCATGTCCCAGACATGGTTTTACACT-G-ACACATATC-AAGCCGATGCCATG-CCCTAGACAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCACACACATCAAAGCCGATGCCATGTCCC-AAACAT
* * *
23144803 AGTCTTACACT-AGCTCCCA-TATCTCGAGGTCAATGCCATGTCCTAGACATGGTCTTACACTAG
65 AGTCTTACACTGA-CT-CCAGTATATCGAGGTCAATGCCATGTCCCAAACATGGTCTTACACTAG
*
23144866 CTCTCATATCT-TAAG-GCCGAT
128 CTCTC--ATCTATAAGTGCAGAT
** * *
23144887 TTCATGTCCCATACATAGTCTTACACT
1 GCCATGTCCCAGACATGGTCTTACACT
23144914 AGCTCTCATA
Statistics
Matches: 145, Mismatches: 22, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
144 4 0.03
145 100 0.69
146 11 0.08
147 5 0.03
148 25 0.17
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (148 bp):
GCCATGTCCCAGACATGGTCTTACACTGGCACACACATCAAAGCCGATGCCATGTCCCAAACATA
GTCTTACACTGACTCCAGTATATCGAGGTCAATGCCATGTCCCAAACATGGTCTTACACTAGCTC
TCATCTATAAGTGCAGAT
Found at i:23144914 original size:50 final size:50
Alignment explanation
Indices: 23144594--23144927 Score: 215
Period size: 50 Copynumber: 6.8 Consensus size: 50
23144584 AGGTGCTGAC
* * * * * * * *
23144594 GCCATGTCCCGGACATGGTCTTACACTGGCTCACACA--TCAAAGTCGAT
1 GCCATGTCCCAGACATAGTCTTACACTAGCTCTCATATCTCAAGGCCAAT
* * * * * *
23144642 GCCATGTCCCAAACATGGTCTTACACT-GACTCT-AGTATATCGAGGTCGAT
1 GCCATGTCCCAGACATAGTCTTACACTAG-CTCTCA-TATCTCAAGGCCAAT
* * * * * * *
23144692 GTCATGTCCCAAACATGGTCTTACACTGGCTCTCATCTATC--GGTGCAGAT
1 GCCATGTCCCAGACATAGTCTTACACTAGCTCTCATATCTCAAGG-CCA-AT
* * * * *
23144742 GCCATGTCCCAGACATGGTTTTACACT-G-ACACATA--TCAA-GCCGAT
1 GCCATGTCCCAGACATAGTCTTACACTAGCTCTCATATCTCAAGGCCAAT
* * *
23144787 GCCATG-CCCTAGACATAGTCTTACACTAGCTCCCATATCTCGAGGTCAAT
1 GCCATGTCCC-AGACATAGTCTTACACTAGCTCTCATATCTCAAGGCCAAT
* * * *
23144837 GCCATGTCCTAGACATGGTCTTACACTAGCTCTCATATCTTAAGGCCGAT
1 GCCATGTCCCAGACATAGTCTTACACTAGCTCTCATATCTCAAGGCCAAT
** *
23144887 TTCATGTCCCATACATAGTCTTACACTAGCTCTCATATCTC
1 GCCATGTCCCAGACATAGTCTTACACTAGCTCTCATATCTC
23144928 CCTAGCATCA
Statistics
Matches: 231, Mismatches: 38, Indels: 32
0.77 0.13 0.11
Matches are distributed among these distances:
44 3 0.01
45 23 0.10
46 4 0.02
47 8 0.03
48 35 0.15
49 5 0.02
50 149 0.65
51 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.28
Consensus pattern (50 bp):
GCCATGTCCCAGACATAGTCTTACACTAGCTCTCATATCTCAAGGCCAAT
Found at i:23154565 original size:17 final size:17
Alignment explanation
Indices: 23154545--23154577 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
23154535 ATTAAGAATG
23154545 TTATTAAATTATATTTT
1 TTATTAAATTATATTTT
23154562 TTATTAAATTATATTT
1 TTATTAAATTATATTT
23154578 AAGAATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTATTAAATTATATTTT
Found at i:23155408 original size:26 final size:26
Alignment explanation
Indices: 23155378--23155434 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
23155368 AAATAAATAT
* *
23155378 TAAAACATAAATAT-TTTTATTAAAAA
1 TAAAACATAAACATAATTTATT-AAAA
*
23155404 TAAAATATAAACATAATTTATTAAAA
1 TAAAACATAAACATAATTTATTAAAA
23155430 TAAAA
1 TAAAA
23155435 TTTAAAACAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 21 0.78
27 6 0.22
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (26 bp):
TAAAACATAAACATAATTTATTAAAA
Found at i:23155435 original size:26 final size:28
Alignment explanation
Indices: 23155393--23155446 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
23155383 CATAAATATT
23155393 TTTATTAAAAATAAAATAT-AAACATAA
1 TTTATTAAAAATAAAATATAAAACATAA
*
23155420 TTTATT-AAAATAAAATTTAAAACATAA
1 TTTATTAAAAATAAAATATAAAACATAA
23155447 AAAATAACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 11 0.44
27 14 0.56
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (28 bp):
TTTATTAAAAATAAAATATAAAACATAA
Found at i:23164530 original size:130 final size:130
Alignment explanation
Indices: 23164379--23164633 Score: 413
Period size: 130 Copynumber: 2.0 Consensus size: 130
23164369 AAGAAAATGT
* * * *
23164379 GAGTAGATAAATTTAGAGAAAGGAAAAGTAAGTACAGAGATTGAAA-GTACAATTGATAGAGAAA
1 GAGTAGATAAATGTAGAGAAAGGAAAAGTAAGTACAGACATT-AAACGTACAACTGACAGAGAAA
* *
23164443 GAAAATTTTATTAGATAAAGAATACAAAAGAGGTATAGCCTTATTAGTCGCCAAGTAGGCAGTCG
65 GAAAATTTGATTAGATAAAGAATACAAAAGAGGTATAGCCTTATTAGCCGCCAAGTAGGCAGTCG
23164508 C
130 C
* *
23164509 GAGTAGATAAATGTAGAGAAAGGAAAAGTAAGTGCATACATTAAACGTACAACTGACAGAGAAAG
1 GAGTAGATAAATGTAGAGAAAGGAAAAGTAAGTACAGACATTAAACGTACAACTGACAGAGAAAG
*
23164574 AAAATTTGATTAGATAAAGAATACAAAATAGGTATAGCCTTATTAGCCGCCAAGTAGGCA
66 AAAATTTGATTAGATAAAGAATACAAAAGAGGTATAGCCTTATTAGCCGCCAAGTAGGCA
23164634 ACTTCATCAA
Statistics
Matches: 115, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
129 3 0.03
130 112 0.97
ACGTcount: A:0.46, C:0.10, G:0.22, T:0.22
Consensus pattern (130 bp):
GAGTAGATAAATGTAGAGAAAGGAAAAGTAAGTACAGACATTAAACGTACAACTGACAGAGAAAG
AAAATTTGATTAGATAAAGAATACAAAAGAGGTATAGCCTTATTAGCCGCCAAGTAGGCAGTCGC
Found at i:23165521 original size:14 final size:14
Alignment explanation
Indices: 23165488--23165521 Score: 54
Period size: 12 Copynumber: 2.6 Consensus size: 14
23165478 TAATTTAGTT
23165488 TTTGAAAACATATA
1 TTTGAAAACATATA
23165502 -TT-AAAACATATA
1 TTTGAAAACATATA
23165514 TTTGAAAA
1 TTTGAAAA
23165522 GTTCATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
12 10 0.56
13 4 0.22
14 4 0.22
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.35
Consensus pattern (14 bp):
TTTGAAAACATATA
Found at i:23173245 original size:48 final size:48
Alignment explanation
Indices: 23173189--23173297 Score: 130
Period size: 48 Copynumber: 2.3 Consensus size: 48
23173179 AATGAAGACG
* **
23173189 AAGCCACCAAATTCACAGGCAAGCTACCAGTACATATA-GTTGTGGACA
1 AAGCCACCAAATTCACAGACAAGCTACCAAAACATATAGGTTGTGGA-A
** * *
23173237 AAGCCACCAAATTCGTAGACAAGCTACCAAAAGATTTAGGTTGTGGAA
1 AAGCCACCAAATTCACAGACAAGCTACCAAAACATATAGGTTGTGGAA
*
23173285 AAACCACCAAATT
1 AAGCCACCAAATT
23173298 TGCAAATTTT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
48 44 0.85
49 8 0.15
ACGTcount: A:0.40, C:0.23, G:0.17, T:0.19
Consensus pattern (48 bp):
AAGCCACCAAATTCACAGACAAGCTACCAAAACATATAGGTTGTGGAA
Found at i:23173905 original size:11 final size:12
Alignment explanation
Indices: 23173889--23173940 Score: 60
Period size: 11 Copynumber: 4.7 Consensus size: 12
23173879 GTAGTGTTAA
23173889 GGTGGTTGA-AT
1 GGTGGTTGATAT
23173900 GGTGG-TGAT-T
1 GGTGGTTGATAT
23173910 AGGTGGTT-ATAT
1 -GGTGGTTGATAT
23173922 GGTGG-TGATAT
1 GGTGGTTGATAT
23173933 GGTGGTTG
1 GGTGGTTG
23173941 TTAAGTGGTG
Statistics
Matches: 35, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
10 5 0.14
11 26 0.74
12 4 0.11
ACGTcount: A:0.15, C:0.00, G:0.46, T:0.38
Consensus pattern (12 bp):
GGTGGTTGATAT
Found at i:23173913 original size:22 final size:22
Alignment explanation
Indices: 23173888--23173940 Score: 74
Period size: 22 Copynumber: 2.4 Consensus size: 22
23173878 GGTAGTGTTA
23173888 AGGTGGTTGA-ATGGTGGTGATT
1 AGGTGGTTGATATGGTGGTGA-T
23173910 AGGTGGTT-ATATGGTGGTGAT
1 AGGTGGTTGATATGGTGGTGAT
23173931 ATGGTGGTTG
1 A-GGTGGTTG
23173941 TTAAGTGGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
21 3 0.11
22 25 0.89
ACGTcount: A:0.17, C:0.00, G:0.45, T:0.38
Consensus pattern (22 bp):
AGGTGGTTGATATGGTGGTGAT
Found at i:23185045 original size:42 final size:42
Alignment explanation
Indices: 23184932--23185051 Score: 134
Period size: 44 Copynumber: 2.8 Consensus size: 42
23184922 AGGATTTTCG
* * * * * *
23184932 GTATGTGATTTTGTGTAAGACCATGTTTGGGACGTTGGCATC
1 GTATTTGATTTCGTGTAAGACCATGTCTGGGACATCGACATC
23184974 G-ATTTTAGATTTGCGTGTAAGACCATGTCTGGGACATCGACATC
1 GTA-TTT-GATTT-CGTGTAAGACCATGTCTGGGACATCGACATC
* *
23185018 GTATTTGATTTCGTATAAGACCCTGTCTGGGACA
1 GTATTTGATTTCGTGTAAGACCATGTCTGGGACA
23185052 CATGCATCGA
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
41 1 0.02
42 24 0.36
43 10 0.15
44 30 0.45
45 1 0.02
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.35
Consensus pattern (42 bp):
GTATTTGATTTCGTGTAAGACCATGTCTGGGACATCGACATC
Found at i:23185060 original size:42 final size:44
Alignment explanation
Indices: 23184947--23185068 Score: 128
Period size: 44 Copynumber: 2.8 Consensus size: 44
23184937 TGATTTTGTG
* * * * *
23184947 TAAGACCATGTTTGGGACGTTGGCATCGAT-TTTAGATTTGCGTG
1 TAAGACCATGTCTGGGACATCGACATCGATATTT-GATTTGCGTA
23184991 TAAGACCATGTCTGGGACATCGACATCG-TATTTGATTT-CGTA
1 TAAGACCATGTCTGGGACATCGACATCGATATTTGATTTGCGTA
*
23185033 TAAGACCCTGTCTGGGACA-C-ATGCATCGATATTTGA
1 TAAGACCATGTCTGGGACATCGA--CATCGATATTTGA
23185069 CAACATGTAA
Statistics
Matches: 68, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
40 1 0.01
41 1 0.01
42 26 0.38
43 13 0.19
44 27 0.40
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.33
Consensus pattern (44 bp):
TAAGACCATGTCTGGGACATCGACATCGATATTTGATTTGCGTA
Found at i:23186401 original size:16 final size:17
Alignment explanation
Indices: 23186380--23186414 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
23186370 GCGGTGACCT
23186380 TTGT-AATTTAGAAAAA
1 TTGTAAATTTAGAAAAA
*
23186396 TTGTAAATTTTGAAAAA
1 TTGTAAATTTAGAAAAA
23186413 TT
1 TT
23186415 TTGTATGAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.43
Consensus pattern (17 bp):
TTGTAAATTTAGAAAAA
Found at i:23203391 original size:40 final size:40
Alignment explanation
Indices: 23203310--23203487 Score: 209
Period size: 40 Copynumber: 4.5 Consensus size: 40
23203300 CAACCAAGTA
* * *
23203310 CCTTCGGGATTTAG-CCGGACATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
23203349 CCTTCGGGACTTAGCCCAGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
23203389 CCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
23203429 CCTTCGGGGCTTAGCCC-GAAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* *
23203469 CCGTCGGGGCTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
23203488 TTATCATCCG
Statistics
Matches: 121, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
39 17 0.14
40 103 0.85
41 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:23211627 original size:40 final size:39
Alignment explanation
Indices: 23211557--23211773 Score: 231
Period size: 40 Copynumber: 5.5 Consensus size: 39
23211547 TGTGTGAATT
**
23211557 TACTTCGGTACCTCTG-ATGCACATGTGTGCCCCTGTTTG
1 TACTTCGGTACC-CTGAATGCACATACGTGCCCCTGTTTG
* *
23211596 TACTTCAGTACCCTAGAATGCACATACGTGCCCCTATTTG
1 TACTTCGGTACCCT-GAATGCACATACGTGCCCCTGTTTG
* * *
23211636 TACTTCAGTACCTTTGAATGCACATACATGCCCCTGTTTG
1 TACTTCGGTACC-CTGAATGCACATACGTGCCCCTGTTTG
* *
23211676 TACTTTGGTACCCCTGAATGCACATACGTGCCCTTGTTTG
1 TACTTCGGTA-CCCTGAATGCACATACGTGCCCCTGTTTG
* * * * *
23211716 TACTTTGGTACCCCTAAATGCACATACGT-CTCTTGTTTA
1 TACTTCGGTA-CCCTGAATGCACATACGTGCCCCTGTTTG
*
23211755 TACTTCGATAACCCTGAAT
1 TACTTCGGT-ACCCTGAAT
23211774 ACATTATAAC
Statistics
Matches: 155, Mismatches: 18, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
38 2 0.01
39 34 0.22
40 116 0.75
41 3 0.02
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (39 bp):
TACTTCGGTACCCTGAATGCACATACGTGCCCCTGTTTG
Found at i:23211691 original size:20 final size:20
Alignment explanation
Indices: 23211666--23211730 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
23211656 CACATACATG
23211666 CCCCTGTTTGTACTTTGGTA
1 CCCCTGTTTGTACTTTGGTA
** * * ** *
23211686 CCCCTGAATGCACATACGTG
1 CCCCTGTTTGTACTTTGGTA
*
23211706 CCCTTGTTTGTACTTTGGTA
1 CCCCTGTTTGTACTTTGGTA
23211726 CCCCT
1 CCCCT
23211731 AAATGCACAT
Statistics
Matches: 29, Mismatches: 16, Indels: 0
0.64 0.36 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.14, C:0.31, G:0.18, T:0.37
Consensus pattern (20 bp):
CCCCTGTTTGTACTTTGGTA
Found at i:23212806 original size:54 final size:54
Alignment explanation
Indices: 23212622--23212817 Score: 169
Period size: 54 Copynumber: 3.6 Consensus size: 54
23212612 ACGATTTGCA
* * * * * * * * **
23212622 ACATGACTATGTGTATTAATTTAGTGACTCATACGACCTGGCACATGGGCTTTG
1 ACATGACTGTGTGTATTAAGTCAGTGAGTTACACGGCCTGGCACACGGGCTACG
* *
23212676 ACACTG-CTGTGTGTATTAAGTTAGTGAGTCACACGGCCTGGCACACGGGCTACG
1 ACA-TGACTGTGTGTATTAAGTCAGTGAGTTACACGGCCTGGCACACGGGCTACG
* ** * * ** *
23212730 ACATGGCCATGTGTATCAAGTCAGTGAGTTACATGGCCTGGCACACGGTTTGCG
1 ACATGACTGTGTGTATTAAGTCAGTGAGTTACACGGCCTGGCACACGGGCTACG
* **
23212784 ACATGACTGTGTGTATTTAGTCAGAAAGTTACAC
1 ACATGACTGTGTGTATTAAGTCAGTGAGTTACAC
23212818 AGCTAGAGAC
Statistics
Matches: 115, Mismatches: 25, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
53 2 0.02
54 111 0.97
55 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (54 bp):
ACATGACTGTGTGTATTAAGTCAGTGAGTTACACGGCCTGGCACACGGGCTACG
Found at i:23212891 original size:43 final size:43
Alignment explanation
Indices: 23212826--23212923 Score: 169
Period size: 43 Copynumber: 2.3 Consensus size: 43
23212816 ACAGCTAGAG
*
23212826 ACACGGTCTGGGACACGGCCATGTGTCCCAACTTTGAATGCCC
1 ACACGGTCTGGGACACAGCCATGTGTCCCAACTTTGAATGCCC
* *
23212869 ACATGGTCTGGGACACAGCCATGTGTCCCAACTTTGAATGGCC
1 ACACGGTCTGGGACACAGCCATGTGTCCCAACTTTGAATGCCC
23212912 ACACGGTCTGGG
1 ACACGGTCTGGG
23212924 CTATGTCACA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.21
Consensus pattern (43 bp):
ACACGGTCTGGGACACAGCCATGTGTCCCAACTTTGAATGCCC
Found at i:23215236 original size:40 final size:40
Alignment explanation
Indices: 23215152--23215335 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
23215142 TTGAATGCTG
* * * *
23215152 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
23215191 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
23215232 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
23215272 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
23215312 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
23215336 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:23215289 original size:80 final size:81
Alignment explanation
Indices: 23215152--23215332 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
23215142 TTGAATGCTG
* * *
23215152 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
23215216 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
23215232 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
23215293 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
23215312 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
23215333 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:23215356 original size:39 final size:38
Alignment explanation
Indices: 23215233--23215382 Score: 122
Period size: 40 Copynumber: 3.8 Consensus size: 38
23215223 GTTATTAATT
* ** * *
23215233 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACT-ATA
** * *
23215273 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-ATA
*
23215312 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAT-A
* *
23215352 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
23215383 GAGCTATATC
Statistics
Matches: 92, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
39 32 0.35
40 60 0.65
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTATA
Found at i:23223106 original size:40 final size:40
Alignment explanation
Indices: 23223029--23223205 Score: 182
Period size: 40 Copynumber: 4.5 Consensus size: 40
23223019 CTGTCCGGGC
* * * *
23223029 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-ATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT-TCCGGAT
*
23223069 TAAGAT-CCGAAGGTATTTGTGCGAGTTATTAATTCCGGAT
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTATTAATTCCGGAT
* * * * *
23223109 TAAGTCCCGAAGGCCTTTGTGCGAGATACTAATTTCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTATTAATTCCGGAT
* * *
23223149 TAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTATTAATTCCGGAT
23223188 TAAGTCCCGAAGGCATTT
1 TAAGTCCCGAAGGCATTT
23223206 AATGAGTTAC
Statistics
Matches: 115, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
39 27 0.23
40 78 0.68
41 10 0.09
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTATTAATTCCGGAT
Found at i:23225698 original size:13 final size:13
Alignment explanation
Indices: 23225680--23225709 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
23225670 TATGGGCGTG
23225680 TGGCTTGGCCGTA
1 TGGCTTGGCCGTA
*
23225693 TGGCTTGGCCGTG
1 TGGCTTGGCCGTA
23225706 TGGC
1 TGGC
23225710 CCAAGTCAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.03, C:0.23, G:0.43, T:0.30
Consensus pattern (13 bp):
TGGCTTGGCCGTA
Found at i:23230052 original size:29 final size:29
Alignment explanation
Indices: 23230020--23230081 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 29
23230010 TTGGCCACTA
* *
23230020 AACTTTTAAAATTTTTAAAATGATCACCC
1 AACTTTTAAAATTTTCAAAATGACCACCC
*
23230049 AACTTTTAAAATTTTCAAAATGGCCACCC
1 AACTTTTAAAATTTTCAAAATGACCACCC
23230078 AACT
1 AACT
23230082 AATCAAGTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.40, C:0.21, G:0.05, T:0.34
Consensus pattern (29 bp):
AACTTTTAAAATTTTCAAAATGACCACCC
Found at i:23230398 original size:19 final size:18
Alignment explanation
Indices: 23230363--23230397 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
23230353 TTGTATTTTA
23230363 TAAAAATAAAAAATATAT
1 TAAAAATAAAAAATATAT
*
23230381 TAAAAAT-ATAAATATAT
1 TAAAAATAAAAAATATAT
23230398 AAGAATCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAAATAAAAAATATAT
Found at i:23230434 original size:25 final size:24
Alignment explanation
Indices: 23230379--23230442 Score: 71
Period size: 23 Copynumber: 2.7 Consensus size: 24
23230369 TAAAAAATAT
*
23230379 ATTAAAAATATAAA-TATATAAGA
1 ATTAAAAATAAAAAGTATATAAGA
23230402 ATCATAAAAATAAAAAGTATATAAGAA
1 AT--TAAAAATAAAAAGTATATAAG-A
23230429 ATT--AAATAAAAAGT
1 ATTAAAAATAAAAAGT
23230443 TTTAACTAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
23 13 0.36
25 12 0.33
26 8 0.22
27 3 0.08
ACGTcount: A:0.66, C:0.02, G:0.06, T:0.27
Consensus pattern (24 bp):
ATTAAAAATAAAAAGTATATAAGA
Found at i:23230509 original size:22 final size:22
Alignment explanation
Indices: 23230484--23230528 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
23230474 CAACTATCCC
* *
23230484 AAATTTTCTCATGAACCAAACA
1 AAATTATCTCATCAACCAAACA
*
23230506 AAATTATCTCATCAATCAAACA
1 AAATTATCTCATCAACCAAACA
23230528 A
1 A
23230529 TAAACAAGTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.02, T:0.27
Consensus pattern (22 bp):
AAATTATCTCATCAACCAAACA
Found at i:23230623 original size:22 final size:21
Alignment explanation
Indices: 23230597--23230640 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
23230587 TTTTATGAAA
23230597 TTTTTAAAAAGGAGAAAGGGTT
1 TTTTTAAAAAGGA-AAAGGGTT
* *
23230619 TTTTTAGAAAGTAAAAGGGTT
1 TTTTTAAAAAGGAAAAGGGTT
23230640 T
1 T
23230641 GAAAGATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.39, C:0.00, G:0.25, T:0.36
Consensus pattern (21 bp):
TTTTTAAAAAGGAAAAGGGTT
Found at i:23235755 original size:28 final size:28
Alignment explanation
Indices: 23235724--23235779 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
23235714 CTTAGAGATA
23235724 AATTATTTATAAATATAAGTTTTATATG
1 AATTATTTATAAATATAAGTTTTATATG
*
23235752 AATTATTTATAAATATAAGTTTTGTATG
1 AATTATTTATAAATATAAGTTTTATATG
23235780 TTATAATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (28 bp):
AATTATTTATAAATATAAGTTTTATATG
Found at i:23238413 original size:40 final size:40
Alignment explanation
Indices: 23238352--23238561 Score: 201
Period size: 40 Copynumber: 5.2 Consensus size: 40
23238342 CGATATCTCG
* * *
23238352 CACACTAAGTGCCGTACATAGCCGAAGTTATCTCAGATCA
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTCAGATCA
* * * *
23238392 CACACTAAGTGCCATATATAGCTGAAGCTATGT-TGAATCG
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTCAG-ATCA
* * * *
23238432 CATACTAAGTGCCGTACATAGCCGAAGCTATCTCAAATCA
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTCAGATCA
* * * *
23238472 CACACTAATTGCCATATATAGCTGAAGCTATGTCTA-ATCG
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTC-AGATCA
* * * *
23238512 CACACTAAGTGCCATATATAGTCGAATCTATAT-TGTATCA
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTCAG-ATCA
23238552 CACACTAAGT
1 CACACTAAGT
23238562 ACCACAAATA
Statistics
Matches: 136, Mismatches: 29, Indels: 10
0.78 0.17 0.06
Matches are distributed among these distances:
39 1 0.01
40 134 0.99
41 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.27
Consensus pattern (40 bp):
CACACTAAGTGCCATATATAGCCGAAGCTATCTCAGATCA
Found at i:23238485 original size:80 final size:80
Alignment explanation
Indices: 23238349--23238561 Score: 302
Period size: 80 Copynumber: 2.7 Consensus size: 80
23238339 ACTCGATATC
* *
23238349 TCGCACACTAAGTGCCGTACATAGCCGAAGTTATCTCAGATCACACACTAAGTGCCATATATAGC
1 TCGCACACTAAGTGCCGTACATAGCCGAAGCTATCTCAAATCACACACTAAGTGCCATATATAGC
23238414 TGAAGCTATGT-TGAA
66 TGAAGCTATGTCT-AA
* *
23238429 TCGCATACTAAGTGCCGTACATAGCCGAAGCTATCTCAAATCACACACTAATTGCCATATATAGC
1 TCGCACACTAAGTGCCGTACATAGCCGAAGCTATCTCAAATCACACACTAAGTGCCATATATAGC
23238494 TGAAGCTATGTCTAA
66 TGAAGCTATGTCTAA
* * * * * ***
23238509 TCGCACACTAAGTGCCATATATAGTCGAATCTATATTGTATCACACACTAAGT
1 TCGCACACTAAGTGCCGTACATAGCCGAAGCTATCTCAAATCACACACTAAGT
23238562 ACCACAAATA
Statistics
Matches: 118, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
80 117 0.99
81 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (80 bp):
TCGCACACTAAGTGCCGTACATAGCCGAAGCTATCTCAAATCACACACTAAGTGCCATATATAGC
TGAAGCTATGTCTAA
Found at i:23238588 original size:120 final size:120
Alignment explanation
Indices: 23238352--23238576 Score: 265
Period size: 120 Copynumber: 1.9 Consensus size: 120
23238342 CGATATCTCG
* *
23238352 CACACTAAGTGCCGTACATAGCCGAAGTTATCTCAGATCACACACTAAGTGCCATATATAGCTGA
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTCAGATCACACACTAAGTGCCATATATAGCTGA
* * * * ** * *
23238417 AGCTATGTTGAATCGCATACTAAGTGCCGTACATAGCCGAAGCTATCTCAAATCA
66 AGCTATATTGAATCACACACTAAGTACCACAAATAACCGAAGCTATCTCAAATCA
* * * * *
23238472 CACACTAATTGCCATATATAGCTGAAGCTATGTCTA-ATCGCACACTAAGTGCCATATATAG-TC
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTC-AGATCACACACTAAGTGCCATATATAGCT-
* *
23238535 GAATCTATATTGTATCACACACTAAGTACCACAAATAACCGA
64 GAAGCTATATTGAATCACACACTAAGTACCACAAATAACCGA
23238577 TTTATCGTCA
Statistics
Matches: 86, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
119 1 0.01
120 84 0.98
121 1 0.01
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.25
Consensus pattern (120 bp):
CACACTAAGTGCCATACATAGCCGAAGCTATCTCAGATCACACACTAAGTGCCATATATAGCTGA
AGCTATATTGAATCACACACTAAGTACCACAAATAACCGAAGCTATCTCAAATCA
Found at i:23247004 original size:48 final size:48
Alignment explanation
Indices: 23246933--23247202 Score: 196
Period size: 48 Copynumber: 5.6 Consensus size: 48
23246923 CATGCGTACT
**
23246933 AGTGTAAGACCATGTCTAAGACATGGCATCAGCCTCGAGATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGAGATGTGAGCC
* **
23246981 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CTATGAGATGT--GTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCT-CGAGATGTGAGCC
* * *
23247027 AGTGTAAGACCATGTCTGGGACATGGCATCTA-CATAGATATGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-AGCCTCGAGATGT--GAGCC
* * * * * * * * *
23247077 AATGTAAGACCATGTCTAGGACATGACGTCGGTCTCGA-TTGCGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGAGATGTG--AGCC
* * * * *
23247126 AGTGTAAGAGCATGTCTGGGACATGACATC-GACTTGATG-TATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGA-GATGTGAGCC
* *
23247173 AATGTAAGACCATGTCTAGGG-CATAGCATC
1 AGTGTAAGACCATGTCT-GGGACATGGCATC
23247203 GGTATCCTAA
Statistics
Matches: 175, Mismatches: 34, Indels: 27
0.74 0.14 0.11
Matches are distributed among these distances:
46 37 0.21
47 30 0.17
48 45 0.26
49 33 0.19
50 30 0.17
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGAGATGTGAGCC
Found at i:23247070 original size:46 final size:45
Alignment explanation
Indices: 23246931--23247070 Score: 156
Period size: 46 Copynumber: 3.0 Consensus size: 45
23246921 GACATGCGTA
** * *
23246931 CTAGTGTAAGACCATGTCTAAGACATGGCATCAGCCTCGAGATGTGAG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCAG-CT--AGATATGTG
* *
23246979 CCAGTGTAAGACCATGTCTGGGACATGGCATCAGCTATGAGATGTG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCAGCTA-GATATGTG
*
23247025 TTAGTGTAAGACCATGTCTGGGACATGGCATCTA-CATAGATATGTG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATC-AGC-TAGATATGTG
23247071 AGAGCCAATG
Statistics
Matches: 80, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
45 1 0.01
46 43 0.54
47 5 0.06
48 31 0.39
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (45 bp):
CTAGTGTAAGACCATGTCTGGGACATGGCATCAGCTAGATATGTG
Found at i:23247205 original size:96 final size:98
Alignment explanation
Indices: 23246933--23247205 Score: 253
Period size: 96 Copynumber: 2.8 Consensus size: 98
23246923 CATGCGTACT
** * * * *
23246933 AGTGTAAGACCATGTCTAAGACATGGCATC-AGCCTCGAGATGT--GAGCCAGTGTAAGACCATG
1 AGTGTAAGACCATGTCTGGGACATGACATCGA-CATAGA-ATGTGAGAGCCAATGTAAGACCATG
* * * * * *
23246995 TCTGGGACATGGCATCAG-CT--A-TGAGATGTGTT
64 TCTAGGACATGACATCGGTCTCGATTGCGAT-AGTC
* *
23247027 AGTGTAAGACCATGTCTGGGACATGGCATCTACATAGATATGTGAGAGCCAATGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGACATCGACATAGA-ATGTGAGAGCCAATGTAAGACCATGT
*
23247092 CTAGGACATGACGTCGGTCTCGATTGCGATAGTC
65 CTAGGACATGACATCGGTCTCGATTGCGATAGTC
* *
23247126 AGTGTAAGAGCATGTCTGGGACATGACATCGAC-TTG-ATGT-ATGAGCCAATGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGACATCGACATAGAATGTGA-GAGCCAATGTAAGACCATGT
*
23247188 CTAGGGCAT-AGCATCGGT
65 CTAGGACATGA-CATCGGT
23247206 ATCCTAACCT
Statistics
Matches: 151, Mismatches: 19, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
94 36 0.24
95 3 0.02
96 70 0.46
97 2 0.01
98 2 0.01
99 33 0.22
100 5 0.03
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (98 bp):
AGTGTAAGACCATGTCTGGGACATGACATCGACATAGAATGTGAGAGCCAATGTAAGACCATGTC
TAGGACATGACATCGGTCTCGATTGCGATAGTC
Found at i:23249348 original size:40 final size:40
Alignment explanation
Indices: 23249295--23249399 Score: 129
Period size: 40 Copynumber: 2.6 Consensus size: 40
23249285 AGCTATCTTA
*
23249295 AATCACACACTAAGTGCCATATATAGACGAAACTATGTCG
1 AATCGCACACTAAGTGCCATATATAGACGAAACTATGTCG
* * ** *
23249335 AATCGCACGCTAAGTGCCATATATAGCCGATGCTATGTTG
1 AATCGCACACTAAGTGCCATATATAGACGAAACTATGTCG
* * *
23249375 TATCGCACACTAAGTACCACATATA
1 AATCGCACACTAAGTGCCATATATA
23249400 ACCGATTTGT
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (40 bp):
AATCGCACACTAAGTGCCATATATAGACGAAACTATGTCG
Found at i:23267262 original size:40 final size:40
Alignment explanation
Indices: 23267193--23267396 Score: 306
Period size: 40 Copynumber: 5.1 Consensus size: 40
23267183 GGATGAAAAT
* *
23267193 GAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCC
23267233 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
23267273 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
* *
23267313 GAAGGCATTGGTGCGAGCTACTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
* * *
23267353 GAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATCCC
1 GAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCC
23267392 GAAGG
1 GAAGG
23267397 TACTTGGTTT
Statistics
Matches: 154, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 16 0.10
40 137 0.89
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
Found at i:23274095 original size:9 final size:9
Alignment explanation
Indices: 23274081--23274242 Score: 91
Period size: 9 Copynumber: 18.0 Consensus size: 9
23274071 TAAGTATAAT
23274081 TAAGTTATG
1 TAAGTTATG
23274090 TAAGTTATG
1 TAAGTTATG
* * *
23274099 ATATGATATA
1 -TAAGTTATG
*
23274109 T-ATTTATG
1 TAAGTTATG
23274117 T-A-TTATG
1 TAAGTTATG
23274124 TAAGTTATG
1 TAAGTTATG
*
23274133 TAAATTATG
1 TAAGTTATG
* *
23274142 TAAGTTGTT
1 TAAGTTATG
**
23274151 TATCTTATG
1 TAAGTTATG
*
23274160 TAAATTATG
1 TAAGTTATG
*
23274169 TAAGATATGATA
1 TAAG-T-T-ATG
*
23274181 TATATTTATG
1 TA-AGTTATG
23274191 T-A-TTATG
1 TAAGTTATG
23274198 TAAGTTATG
1 TAAGTTATG
* *
23274207 TAAATCATG
1 TAAGTTATG
*
23274216 TAAATTATG
1 TAAGTTATG
*
23274225 TAAATTATG
1 TAAGTTATG
*
23274234 TAAGATATG
1 TAAGTTATG
23274243 ATATATATTT
Statistics
Matches: 118, Mismatches: 26, Indels: 18
0.73 0.16 0.11
Matches are distributed among these distances:
7 12 0.10
8 8 0.07
9 80 0.68
10 10 0.08
11 2 0.02
12 5 0.04
13 1 0.01
ACGTcount: A:0.37, C:0.01, G:0.15, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:23274141 original size:18 final size:18
Alignment explanation
Indices: 23274118--23274242 Score: 110
Period size: 18 Copynumber: 6.8 Consensus size: 18
23274108 ATATTTATGT
23274118 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
* * *
23274136 ATTATGTAAGTTGTTTAT
1 ATTATGTAAGTTATGTAA
* *
23274154 CTTATGTAAATTATGTAA
1 ATTATGTAAGTTATGTAA
* *
23274172 GATATGATATATATTTATGT--
1 -AT-T-ATGTA-AGTTATGTAA
23274192 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
* *
23274210 ATCATGTAAATTATGTAA
1 ATTATGTAAGTTATGTAA
*
23274228 ATTATGTAAGATATG
1 ATTATGTAAGTTATG
23274243 ATATATATTT
Statistics
Matches: 83, Mismatches: 18, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
16 7 0.08
17 4 0.05
18 57 0.69
19 3 0.04
20 1 0.01
21 4 0.05
22 7 0.08
ACGTcount: A:0.38, C:0.02, G:0.15, T:0.46
Consensus pattern (18 bp):
ATTATGTAAGTTATGTAA
Found at i:23274206 original size:65 final size:67
Alignment explanation
Indices: 23274119--23274256 Score: 199
Period size: 65 Copynumber: 2.1 Consensus size: 67
23274109 TATTTATGTA
* ** * **
23274119 TTATGTAAGTTATGTAAATTATGTAAGTTGTTTATCTTATGTAAATTATGTAAGATATGATATAT
1 TTATGTAAGTTATGTAAATTATGTAAATCATGTAAATTATGTAAATTATGTAAGATATGATATAT
23274184 AT
66 AT
*
23274186 TTATGT-A-TTATGTAAGTTATGTAAATCATGTAAATTATGTAAATTATGTAAGATATGATATAT
1 TTATGTAAGTTATGTAAATTATGTAAATCATGTAAATTATGTAAATTATGTAAGATATGATATAT
23274249 AT
66 AT
23274251 TTATGT
1 TTATGT
23274257 TGATGGGATT
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
65 57 0.89
66 1 0.02
67 6 0.09
ACGTcount: A:0.37, C:0.01, G:0.14, T:0.47
Consensus pattern (67 bp):
TTATGTAAGTTATGTAAATTATGTAAATCATGTAAATTATGTAAATTATGTAAGATATGATATAT
AT
Found at i:23274602 original size:16 final size:16
Alignment explanation
Indices: 23274578--23274616 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
23274568 TTCGTGATTA
*
23274578 AATTAAAATAAAATAT
1 AATTTAAATAAAATAT
* *
23274594 AATTTAAATATAATTT
1 AATTTAAATAAAATAT
23274610 AATTTAA
1 AATTTAA
23274617 TTAGGTAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
AATTTAAATAAAATAT
Found at i:23274675 original size:85 final size:87
Alignment explanation
Indices: 23274504--23274677 Score: 271
Period size: 90 Copynumber: 2.0 Consensus size: 87
23274494 TTTGAACAAT
23274504 ATTTAAAAATACATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTT
1 ATTTAAAAATACATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTT
*
23274569 TCGTGATTAAATTAAAATAAAATATA
66 TCGCG----AATTAAAATAAAATATA
* *
23274595 ATTTAAATATA-ATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAATTATTTT
1 ATTTAAAAATACATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTT
23274659 TCGCG-ATTAAAATAAAATA
66 TCGCGAATTAAAATAAAATA
23274678 AAATAAAATA
Statistics
Matches: 80, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
85 14 0.17
90 56 0.70
91 10 0.12
ACGTcount: A:0.53, C:0.03, G:0.07, T:0.37
Consensus pattern (87 bp):
ATTTAAAAATACATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTT
TCGCGAATTAAAATAAAATATA
Found at i:23274714 original size:105 final size:105
Alignment explanation
Indices: 23274586--23274950 Score: 593
Period size: 105 Copynumber: 3.6 Consensus size: 105
23274576 TAAATTAAAA
* *
23274586 TAAAATATAA-TTTAAATATAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACA
1 TAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACA
*
23274650 AATTATTTTTCGCGATTAAAATAAAATAAAATAAAATATT
66 AAATATTTTTCGCGATTAAAATAAAATAAAATAAAATATT
*
23274690 TAAAATAAATCTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACA
1 TAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACA
* *
23274755 AAATATTTTT--CG--T-AATTAAATTAAAATAAAATATT
66 AAATATTTTTCGCGATTAAAATAAAATAAAATAAAATATT
* *
23274790 TAAAATAAAACTTTAAATACAATTTACTTTAATTAGGTAATTTAAAAATAAAATAAAAGTACACA
1 TAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACA
*
23274855 AAATATTTTTCGTGATTAAAATAAAATAAAATAAAATATT
66 AAATATTTTTCGCGATTAAAATAAAATAAAATAAAATATT
23274895 TAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAA-TT-AAAATAAAATAAAA
1 TAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAA
23274951 CTTTAGCGGC
Statistics
Matches: 242, Mismatches: 13, Indels: 13
0.90 0.05 0.05
Matches are distributed among these distances:
100 92 0.38
101 1 0.00
102 1 0.00
103 16 0.07
104 11 0.05
105 121 0.50
ACGTcount: A:0.55, C:0.04, G:0.05, T:0.36
Consensus pattern (105 bp):
TAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACA
AAATATTTTTCGCGATTAAAATAAAATAAAATAAAATATT
Found at i:23274911 original size:205 final size:195
Alignment explanation
Indices: 23274510--23274950 Score: 708
Period size: 205 Copynumber: 2.2 Consensus size: 195
23274500 CAATATTTAA
*
23274510 AAATAC-ATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTG
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTA
*
23274574 ATTAAATTAAAATAAAATATAATTTAAATATAATTTAATTTAATTAGGTAATTTAAAAATAAAAT
66 ATTAAATTAAAATAAAATATAATTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAAT
* * *
23274639 AAAAGTAGACAAATTATTTTTCGCGATTAAAATAAAATAAAATAAAATATTTAAAATAAATCTTT
131 AAAAGTACACAAAATATTTTTCGCGATTAAAATAAAATAAAATAAAATATTTAAAATAAAACTTT
23274704 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTA
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTA
*
23274769 ATTAAATTAAAATAAAATATTTAAAATAAAACTTTAAATACAATTTACTTTAATTAGGTAATTTA
66 ATTAAATTAAAAT-AAA-A--T---AT--AA-TTTAAATACAATTTAATTTAATTAGGTAATTTA
*
23274834 AAAATAAAATAAAAGTACACAAAATATTTTTCGTGATTAAAATAAAATAAAATAAAATATTTAAA
121 AAAATAAAATAAAAGTACACAAAATATTTTTCGCGATTAAAATAAAATAAAATAAAATATTTAAA
23274899 ATAAAACTTT
186 ATAAAACTTT
23274909 AAATACAATTTAATTTAATTAGGTAA-TT-AAAATAAAATAAAA
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAA
23274951 CTTTAGCGGC
Statistics
Matches: 229, Mismatches: 7, Indels: 13
0.92 0.03 0.05
Matches are distributed among these distances:
194 6 0.03
195 70 0.31
196 3 0.01
197 1 0.00
199 1 0.00
202 2 0.01
203 14 0.06
204 4 0.02
205 128 0.56
ACGTcount: A:0.55, C:0.04, G:0.05, T:0.36
Consensus pattern (195 bp):
AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTA
ATTAAATTAAAATAAAATATAATTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAAT
AAAAGTACACAAAATATTTTTCGCGATTAAAATAAAATAAAATAAAATATTTAAAATAAAACTTT
Found at i:23277946 original size:15 final size:15
Alignment explanation
Indices: 23277911--23277958 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
23277901 CTTAAACCCC
* *
23277911 AACCCTTAAACCATA
1 AACCCATAATCCATA
*
23277926 AA-CCATAATCCCTA
1 AACCCATAATCCATA
23277940 AACCCATAATCCATA
1 AACCCATAATCCATA
23277955 AACC
1 AACC
23277959 TTAAAATAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 11 0.39
15 17 0.61
ACGTcount: A:0.46, C:0.35, G:0.00, T:0.19
Consensus pattern (15 bp):
AACCCATAATCCATA
Found at i:23277963 original size:22 final size:21
Alignment explanation
Indices: 23277914--23277999 Score: 68
Period size: 22 Copynumber: 4.0 Consensus size: 21
23277904 AAACCCCAAC
*
23277914 CCTTAAACCATAAACCATAAT
1 CCTTAAACCATAAACCATAAA
* *
23277935 CCCTAAACCCATAATCCATAAA
1 CCTTAAA-CCATAAACCATAAA
*
23277957 CCTTAAA--ATAGTAACTCATACA
1 CCTTAAACCATA--AAC-CATAAA
* *
23277979 CTTTAAACCCTAAACCATAAA
1 CCTTAAACCATAAACCATAAA
23278000 TCTAAACTAT
Statistics
Matches: 50, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
19 3 0.06
21 13 0.26
22 32 0.64
24 2 0.04
ACGTcount: A:0.47, C:0.29, G:0.01, T:0.23
Consensus pattern (21 bp):
CCTTAAACCATAAACCATAAA
Found at i:23278134 original size:7 final size:7
Alignment explanation
Indices: 23278109--23278196 Score: 74
Period size: 7 Copynumber: 12.3 Consensus size: 7
23278099 ATTAATTAAG
23278109 CCCTAAA
1 CCCTAAA
*
23278116 CTCCTAAT
1 C-CCTAAA
23278124 CCCTAAA
1 CCCTAAA
23278131 CCCTAAA
1 CCCTAAA
23278138 CCCTAAA
1 CCCTAAA
23278145 CCCCT-AA
1 -CCCTAAA
23278152 CCCTTAAA
1 CCC-TAAA
*
23278160 -CCTTAA
1 CCCTAAA
23278166 CACCTAAA
1 C-CCTAAA
*
23278174 CCTTAAA
1 CCCTAAA
*
23278181 CCC-CAA
1 CCCTAAA
23278187 CCCTTAAA
1 CCC-TAAA
23278195 CC
1 CC
23278197 ACCCTTAAAC
Statistics
Matches: 65, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
6 11 0.17
7 32 0.49
8 22 0.34
ACGTcount: A:0.38, C:0.43, G:0.00, T:0.19
Consensus pattern (7 bp):
CCCTAAA
Found at i:23278151 original size:29 final size:28
Alignment explanation
Indices: 23278109--23278175 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 28
23278099 ATTAATTAAG
*
23278109 CCCTAAACTCCTAATCCC-TAAACCCTAAA
1 CCCTAAACCCCTAA-CCCTTAAA-CCTAAA
*
23278138 CCCTAAACCCCTAACCCTTAAACCTTAA
1 CCCTAAACCCCTAACCCTTAAACCTAAA
23278166 CACCTAAACC
1 C-CCTAAACC
23278176 TTAAACCCCA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 9 0.26
29 25 0.74
ACGTcount: A:0.37, C:0.43, G:0.00, T:0.19
Consensus pattern (28 bp):
CCCTAAACCCCTAACCCTTAAACCTAAA
Found at i:23278219 original size:25 final size:25
Alignment explanation
Indices: 23278174--23278221 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
23278164 AACACCTAAA
*
23278174 CCTTAAACCCCAACCCTTAAACCAC
1 CCTTAAACCACAACCCTTAAACCAC
*
23278199 CCTTAAACCATAATCCC-TAAACC
1 CCTTAAACCACAA-CCCTTAAACC
23278222 CATAAGCCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 17 0.85
26 3 0.15
ACGTcount: A:0.38, C:0.44, G:0.00, T:0.19
Consensus pattern (25 bp):
CCTTAAACCACAACCCTTAAACCAC
Found at i:23278665 original size:115 final size:116
Alignment explanation
Indices: 23278451--23278666 Score: 276
Period size: 115 Copynumber: 1.9 Consensus size: 116
23278441 CGTTTTTTGT
* * * *
23278451 GGTGTTTTTCAAAAAGCGCCGCTAATGCAACTAAAAGCTCAGAAAAAAACGATGGTGTTTTGCAA
1 GGTGTTTTTCAAAAAGCGCCACTAAAGCAACTAAAAGCTCAGAAAAAAACGACGGAGTTTTGCAA
** * **
23278516 AATTCTTTAGCGGTGTTTTTCAAAAAGCGTCGCTAATACTCGATCTTTAAC
66 AATTCTTTAGCAATGTTTTTCAAAAAACACCGCTAATACTCGATCTTTAAC
* *
23278567 GGTGTTTTT-AAAAGGCGCCACTAAAGCCACTAAAAGCTCA-ATAAAAAACGACGGAGTTTTGCA
1 GGTGTTTTTCAAAAAGCGCCACTAAAGCAACTAAAAGCTCAGA-AAAAAACGACGGAGTTTTGCA
**
23278630 AAATTCTTTTTCAAAT-TTTTTCAAAAAACACCGCTAA
65 AAATTCTTTAGC-AATGTTTTTCAAAAAACACCGCTAA
23278667 AGATCAAGCA
Statistics
Matches: 85, Mismatches: 13, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
114 1 0.01
115 74 0.87
116 10 0.12
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (116 bp):
GGTGTTTTTCAAAAAGCGCCACTAAAGCAACTAAAAGCTCAGAAAAAAACGACGGAGTTTTGCAA
AATTCTTTAGCAATGTTTTTCAAAAAACACCGCTAATACTCGATCTTTAAC
Found at i:23278783 original size:39 final size:40
Alignment explanation
Indices: 23278647--23278785 Score: 167
Period size: 40 Copynumber: 3.5 Consensus size: 40
23278637 TTTTCAAATT
* * * *
23278647 TTTTC-AAAAAACACCGCTAA-AGATCAAGCATTAGCGGCA
1 TTTTCTAAAAAGCACCGCTAATA-CTCAATCTTTAGCGGCA
* * *
23278686 TTTTATAAAAAGCACTGCTAATACTCGATCTTTAGCGGCA
1 TTTTCTAAAAAGCACCGCTAATACTCAATCTTTAGCGGCA
23278726 TTTTCTAAAAAGCACCGCTAATACTCAATCTTTAGCGGCA
1 TTTTCTAAAAAGCACCGCTAATACTCAATCTTTAGCGGCA
* *
23278766 -TTTCTAAAGAGCGCCGCTAA
1 TTTTCTAAAAAGCACCGCTAA
23278786 AGCCACTAAA
Statistics
Matches: 86, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 22 0.26
40 63 0.73
41 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (40 bp):
TTTTCTAAAAAGCACCGCTAATACTCAATCTTTAGCGGCA
Found at i:23282619 original size:119 final size:120
Alignment explanation
Indices: 23282413--23282635 Score: 283
Period size: 119 Copynumber: 1.9 Consensus size: 120
23282403 TCCTCGTTCA
*
23282413 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* * *
23282478 TTAGTAACTCGCATAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTAGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCACC
* * **
23282533 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * * *
23282595 ATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 ATATAGTAAC-TAGCACAAATGCCTTCGGGAATTAACCCGGA
23282636 CATCATTCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
118 4 0.05
119 65 0.74
120 19 0.22
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTAGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCACC
Found at i:23282635 original size:40 final size:40
Alignment explanation
Indices: 23282411--23282635 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
23282401 GCTCCTCGTT
* *
23282411 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
23282451 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
23282491 TAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
23282531 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
23282570 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
23282611 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
23282636 CATCATTCAA
Statistics
Matches: 160, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
38 2 0.01
39 30 0.19
40 116 0.73
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:23287764 original size:49 final size:48
Alignment explanation
Indices: 23287709--23287942 Score: 234
Period size: 49 Copynumber: 4.7 Consensus size: 48
23287699 ATCTGGTACG
* *
23287709 CATAGTAGCCTGTACTTAGTACTACACATTCGACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATT-GACCAATTATCCGATACA
* * ** *
23287758 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACA-TTGACC-AATTATCCGATACA
* ** * * * * *
23287808 CGTAGTAGCCTGTGCTTAGTACTACACACGTGATCGAAGTTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACA-TTGA-CCAA-TTATCCGATACA
* *
23287859 CATAGTAGCCTACACTTAGTACTACACATACGACCAATTATCCGATACA
1 CATAGTAGCCTGCACTTAGTACTACACAT-TGACCAATTATCCGATACA
*
23287908 CATAGTAGCCTACACTTAGTACTACACATGTGACC
1 CATAGTAGCCTGCACTTAGTACTACACAT-TGACC
23287943 TCATAATAGA
Statistics
Matches: 153, Mismatches: 27, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
49 72 0.47
50 47 0.31
51 34 0.22
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (48 bp):
CATAGTAGCCTGCACTTAGTACTACACATTGACCAATTATCCGATACA
Found at i:23287881 original size:101 final size:97
Alignment explanation
Indices: 23287709--23287942 Score: 270
Period size: 100 Copynumber: 2.4 Consensus size: 97
23287699 ATCTGGTACG
* * *
23287709 CATAGTAGCCTGTACTTAGTACTACACATTCGACCAATTATCCGGTACACGTAGTAGCCTGCACT
1 CATAGTAGCCTGTACTTAGTACTACACAGT-GACCAATTATCCGGTACACATAGTAGCCTACACT
** *
23287774 TAGTACTACACACGTGACCTAACCATCTGATACA
65 TAGTACTACACACACGACC-AACCATCCGATACA
* * * * *
23287808 CGTAGTAGCCTGTGCTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTACA
1 CATAGTAGCCTGTACTTAGTACTACACA-GTGA-CCAA-TTATCCGGTACACATAGTAGCCTACA
* **
23287873 CTTAGTACTACACATACGACCAATTATCCGATACA
63 CTTAGTACTACACACACGACCAACCATCCGATACA
**
23287908 CATAGTAGCCTACACTTAGTACTACACATGTGACC
1 CATAGTAGCCTGTACTTAGTACTACACA-GTGACC
23287943 TCATAATAGA
Statistics
Matches: 112, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
99 29 0.26
100 43 0.38
101 40 0.36
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (97 bp):
CATAGTAGCCTGTACTTAGTACTACACAGTGACCAATTATCCGGTACACATAGTAGCCTACACTT
AGTACTACACACACGACCAACCATCCGATACA
Found at i:23290467 original size:15 final size:14
Alignment explanation
Indices: 23290434--23290478 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 14
23290424 CAAGCCTAGA
23290434 ATAAGGAAATCCAAT
1 ATAAGGAAATCC-AT
*
23290449 ATAAAGAAATCCAT
1 ATAAGGAAATCCAT
23290463 GATAAGGAAATACCAT
1 -ATAAGGAAAT-CCAT
23290479 TTACAGCACT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
14 2 0.08
15 20 0.77
16 4 0.15
ACGTcount: A:0.53, C:0.13, G:0.13, T:0.20
Consensus pattern (14 bp):
ATAAGGAAATCCAT
Found at i:23293399 original size:93 final size:93
Alignment explanation
Indices: 23293287--23293458 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
23293277 CGCCCATAAG
*
23293287 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAG-TCAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
23293351 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
**
23293380 CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTCAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
23293445 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
23293459 TCAATCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 3 0.04
93 72 0.96
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTCAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:23293474 original size:46 final size:46
Alignment explanation
Indices: 23293280--23293460 Score: 190
Period size: 46 Copynumber: 3.9 Consensus size: 46
23293270 TGTAACCCGC
* * *
23293280 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACGCTCGCAT
* *
23293326 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* * * **
23293376 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
23293419 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
23293461 AATCATCCTA
Statistics
Matches: 109, Mismatches: 18, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 4 0.04
46 65 0.60
47 30 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:23296411 original size:49 final size:49
Alignment explanation
Indices: 23296358--23296530 Score: 233
Period size: 49 Copynumber: 3.5 Consensus size: 49
23296348 CTGGTACGCA
23296358 TAGTAGCCTGCACTTAGTACTACACATTCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATTCGACCAATTATCCGGTACACG
* ** * *
23296407 TAGTAGCCTGCACTTAGTACTACACACGT-GACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACA-TTCGACC-AATTATCCGGTACACG
* *
23296457 TAGTAG-CTGCGCTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATTCGACCAATTATCCGGTACACG
* *
23296505 TATTAGCCTACACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
23296531 CGTGACCTCA
Statistics
Matches: 105, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
48 17 0.16
49 69 0.66
50 19 0.18
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATTCGACCAATTATCCGGTACACG
Found at i:23296488 original size:98 final size:99
Alignment explanation
Indices: 23296358--23296538 Score: 319
Period size: 98 Copynumber: 1.8 Consensus size: 99
23296348 CTGGTACGCA
* *
23296358 TAGTAGCCTGCACTTAGTACTACACATTCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTACACTTA
23296423 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGTGACCTAACCATCTGATACACG
* *
23296457 TAGTAG-CTGCGCTTAGTACTACACATGCGACCAATTATCCGGTACACGTATTAGCCTACACTTA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTACACTTA
23296521 GTACTACACACGTGACCT
66 GTACTACACACGTGACCT
23296539 CACAATAGAT
Statistics
Matches: 78, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
98 72 0.92
99 6 0.08
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTACACTTA
GTACTACACACGTGACCTAACCATCTGATACACG
Found at i:23308417 original size:16 final size:16
Alignment explanation
Indices: 23308392--23308434 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
23308382 ATGAATCGGC
*
23308392 AAAAGTTGAAATGCCG
1 AAAAGCTGAAATGCCG
23308408 AAAAGCTGAAATGCCG
1 AAAAGCTGAAATGCCG
*
23308424 AAAAGCCGAAA
1 AAAAGCTGAAA
23308435 GTTGGGCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.49, C:0.16, G:0.23, T:0.12
Consensus pattern (16 bp):
AAAAGCTGAAATGCCG
Found at i:23308701 original size:29 final size:28
Alignment explanation
Indices: 23308669--23308768 Score: 103
Period size: 29 Copynumber: 3.5 Consensus size: 28
23308659 GGGCCTAATG
23308669 GGCCATATGAATGTGAATTGGGACTAGTA
1 GGCCATATGAATGTGAATTGGG-CTAGTA
* * * *
23308698 GGCCATAAGAATATGAATTGGGCAAGATG
1 GGCCATATGAATGTGAATTGGGCTAG-TA
* *
23308727 GGCTATATGAATGAG-ATTGGGCCTAGTA
1 GGCCATATGAATGTGAATTGGG-CTAGTA
*
23308755 GGCCATATGCATGT
1 GGCCATATGAATGT
23308769 ATGTAGGGGT
Statistics
Matches: 56, Mismatches: 13, Indels: 5
0.76 0.18 0.07
Matches are distributed among these distances:
28 21 0.38
29 35 0.62
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.26
Consensus pattern (28 bp):
GGCCATATGAATGTGAATTGGGCTAGTA
Found at i:23315269 original size:15 final size:16
Alignment explanation
Indices: 23315223--23315269 Score: 53
Period size: 15 Copynumber: 3.0 Consensus size: 16
23315213 TCTTCATAAA
*
23315223 CATATATCATTCATTT
1 CATATATCAGTCATTT
23315239 CATTATATCAGT-ATTT
1 CA-TATATCAGTCATTT
*
23315255 CATATACCA-TCATTT
1 CATATATCAGTCATTT
23315270 TCAGGAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
14 1 0.04
15 10 0.37
16 8 0.30
17 8 0.30
ACGTcount: A:0.32, C:0.19, G:0.02, T:0.47
Consensus pattern (16 bp):
CATATATCAGTCATTT
Found at i:23315689 original size:23 final size:24
Alignment explanation
Indices: 23315645--23315689 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
23315635 TGGGCTATAT
*
23315645 CAGGAAACTCATAAGAGTTTAAAA
1 CAGGAAACTCATAAGAGCTTAAAA
*
23315669 CAGGAAGCTCAT-AGAGCTTAA
1 CAGGAAACTCATAAGAGCTTAA
23315690 CAGGTGGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.44, C:0.16, G:0.20, T:0.20
Consensus pattern (24 bp):
CAGGAAACTCATAAGAGCTTAAAA
Found at i:23315714 original size:24 final size:24
Alignment explanation
Indices: 23315687--23315736 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
23315677 TCATAGAGCT
23315687 TAACAGGTGGAAACACAAAAATTA
1 TAACAGGTGGAAACACAAAAATTA
23315711 TAACAGGTGGAAACACAAAAATTA
1 TAACAGGTGGAAACACAAAAATTA
23315735 TA
1 TA
23315737 TACTTTTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.54, C:0.12, G:0.16, T:0.18
Consensus pattern (24 bp):
TAACAGGTGGAAACACAAAAATTA
Found at i:23315813 original size:19 final size:18
Alignment explanation
Indices: 23315764--23315800 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
23315754 CTTTACTTAC
23315764 ATATTATAAAATAATTAA
1 ATATTATAAAATAATTAA
23315782 ATATTATAAAATAATTAA
1 ATATTATAAAATAATTAA
23315800 A
1 A
23315801 ATGTGTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
ATATTATAAAATAATTAA
Found at i:23317126 original size:17 final size:18
Alignment explanation
Indices: 23317104--23317137 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23317094 CACATTGAAG
23317104 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
23317121 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
23317138 CATCAAAAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:23318173 original size:28 final size:28
Alignment explanation
Indices: 23318133--23318223 Score: 101
Period size: 28 Copynumber: 3.2 Consensus size: 28
23318123 ATCCACACTT
* * *
23318133 ATTCATTTGGCCCCTTAGGCCCAATCCC
1 ATTCATATGGCCCATTAGGCCCAATCAC
* *
23318161 ATTCATATGGCCCATTAGTCCTAATCAC
1 ATTCATATGGCCCATTAGGCCCAATCAC
* * *
23318189 ATTCATATGGCCCGTCAGGCCTAATCAC
1 ATTCATATGGCCCATTAGGCCCAATCAC
*
23318217 AATCATA
1 ATTCATA
23318224 GTCATGCAAT
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 54 1.00
ACGTcount: A:0.26, C:0.32, G:0.13, T:0.29
Consensus pattern (28 bp):
ATTCATATGGCCCATTAGGCCCAATCAC
Found at i:23319226 original size:23 final size:24
Alignment explanation
Indices: 23319186--23319232 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
23319176 TTAGCCTAGA
*
23319186 ATCCCCAAAATCGGCAATTTGGCT
1 ATCCCCAAAATCGCCAATTTGGCT
*
23319210 ATCCCCAAATTC-CCAATTTGGCT
1 ATCCCCAAAATCGCCAATTTGGCT
23319233 CCACTTCTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 10 0.48
24 11 0.52
ACGTcount: A:0.28, C:0.32, G:0.13, T:0.28
Consensus pattern (24 bp):
ATCCCCAAAATCGCCAATTTGGCT
Found at i:23328352 original size:40 final size:40
Alignment explanation
Indices: 23328131--23328348 Score: 350
Period size: 40 Copynumber: 5.5 Consensus size: 40
23328121 AAACCAAGTA
* *
23328131 CCTTCGGGAATTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
23328170 CCTTCGGGATTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
23328210 CCTTCGCGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
23328250 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
23328290 CCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
23328330 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
23328349 TTATCATCCG
Statistics
Matches: 168, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 14 0.08
40 154 0.92
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:23331149 original size:40 final size:40
Alignment explanation
Indices: 23331103--23331327 Score: 254
Period size: 40 Copynumber: 5.6 Consensus size: 40
23331093 CTTGTGCAAG
* * * *
23331103 GCCTTCGGGTCTTAGCCCGAATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
23331143 GCCTTCGGGACTTAGCCCGGATATAGTCCCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
23331183 GCCTTCGGGTTTTAGCCCGAATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
23331223 GCCTTCGGGTCTTAGCCTGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * * *
23331263 GCCTTCGGATCTTAGTCCGGTTGTAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
23331304 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
23331328 CATTCGAATA
Statistics
Matches: 151, Mismatches: 31, Indels: 5
0.81 0.17 0.03
Matches are distributed among these distances:
39 1 0.01
40 122 0.81
41 28 0.19
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:23331198 original size:80 final size:80
Alignment explanation
Indices: 23331103--23331327 Score: 281
Period size: 80 Copynumber: 2.8 Consensus size: 80
23331093 CTTGTGCAAG
* *
23331103 GCCTTCGGGTCTTAGCCCGAATGTGGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA
1 GCCTTCGGGTCTTAGCCCGAATGTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
23331168 GTC-CCTAGCACAAAT
66 G-CAACTAGCACAAAT
* * * * * *
23331183 GCCTTCGGGTTTTAGCCCGAATATAATCGCTAGCACAAATGCCTTCGGGTCTTAGCCTGGATATA
1 GCCTTCGGGTCTTAGCCCGAATGTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
* *
23331248 GCAACTCGCACGAAT
66 GCAACTAGCACAAAT
* * ** *
23331263 GCCTTCGGATCTTAGTCCGGTTGTAGTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGAATGTAGTCA-CTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
23331328 CATTCGAATA
Statistics
Matches: 121, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
79 1 0.01
80 88 0.73
81 32 0.26
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCCTTCGGGTCTTAGCCCGAATGTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
GCAACTAGCACAAAT
Found at i:23339694 original size:40 final size:40
Alignment explanation
Indices: 23339617--23339794 Score: 279
Period size: 40 Copynumber: 4.5 Consensus size: 40
23339607 AAACCAAGTA
* * *
23339617 CCTTCGGGAATTAG-CCAGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
23339656 CCTTCGGGATTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
23339696 CCTTCGCGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
23339736 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
23339776 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
23339795 TTATCATCCG
Statistics
Matches: 129, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 14 0.11
40 115 0.89
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:23343594 original size:39 final size:39
Alignment explanation
Indices: 23343551--23343670 Score: 231
Period size: 39 Copynumber: 3.1 Consensus size: 39
23343541 TACTTACACA
*
23343551 TAGTCCCTTATTTGAGTGTACGAAGCCCAAAACATACTT
1 TAGTCCCTTATTTGAGTCTACGAAGCCCAAAACATACTT
23343590 TAGTCCCTTATTTGAGTCTACGAAGCCCAAAACATACTT
1 TAGTCCCTTATTTGAGTCTACGAAGCCCAAAACATACTT
23343629 TAGTCCCTTATTTGAGTCTACGAAGCCCAAAACATACTT
1 TAGTCCCTTATTTGAGTCTACGAAGCCCAAAACATACTT
23343668 TAG
1 TAG
23343671 AAAGGGTTCG
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (39 bp):
TAGTCCCTTATTTGAGTCTACGAAGCCCAAAACATACTT
Found at i:23352188 original size:19 final size:22
Alignment explanation
Indices: 23352142--23352188 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
23352132 AAAAATGATA
23352142 ATTATTAATATATAATTATATCC
1 ATTA-TAATATATAATTATATCC
23352165 ATTATAATATAT-ATTA-AT-C
1 ATTATAATATATAATTATATCC
23352184 ATTAT
1 ATTAT
23352189 CAATTTTAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 2 0.08
21 4 0.17
22 8 0.33
23 4 0.17
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49
Consensus pattern (22 bp):
ATTATAATATATAATTATATCC
Found at i:23352287 original size:22 final size:24
Alignment explanation
Indices: 23352242--23352287 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
23352232 TAATCTTTAA
23352242 TATATAATTATATCTATTATAATT
1 TATATAATTATATCTATTATAATT
23352266 TATAT-ATTA-ATCT-TTATCAATT
1 TATATAATTATATCTATTAT-AATT
23352288 AGCATAGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 4 0.19
22 8 0.38
23 4 0.19
24 5 0.24
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (24 bp):
TATATAATTATATCTATTATAATT
Found at i:23358432 original size:11 final size:11
Alignment explanation
Indices: 23358416--23358443 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
23358406 ATTGTTGCGG
23358416 AAGCGTTTCAA
1 AAGCGTTTCAA
23358427 AAGCGTTTCAA
1 AAGCGTTTCAA
23358438 AAGCGT
1 AAGCGT
23358444 AATGTTTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (11 bp):
AAGCGTTTCAA
Found at i:23362144 original size:43 final size:43
Alignment explanation
Indices: 23362072--23362155 Score: 125
Period size: 42 Copynumber: 2.0 Consensus size: 43
23362062 TGGACCTTTC
* *
23362072 TCAGATCACCGGCATTTTGCCTGTTAGGCTCG-AGGCCCGATA
1 TCAGATCACCGGCATTTAGCCTGCTAGGCTCGAAGGCCCGATA
*
23362114 TCAGTTCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGA
1 TCAGATCACCGGCATT-TAGCCTGCTAGGCTCGAAGGCCCGA
23362156 ATAGTATCTC
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
42 15 0.41
43 14 0.38
44 8 0.22
ACGTcount: A:0.20, C:0.30, G:0.26, T:0.24
Consensus pattern (43 bp):
TCAGATCACCGGCATTTAGCCTGCTAGGCTCGAAGGCCCGATA
Found at i:23362185 original size:45 final size:45
Alignment explanation
Indices: 23362072--23362203 Score: 139
Period size: 45 Copynumber: 3.0 Consensus size: 45
23362062 TGGACCTTTC
* * *
23362072 TCAGATCACCGGCATT-TTGCCTGTTAGGCTCG-AGGCCCG-ATA
1 TCAGTTCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA
23362114 TCAGTTCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA
1 TCAGTTCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA
* ** * *
23362159 GT-A-TCTCACTGGCATTATAGTTTGCTAAGCTCAAAGGCCCGAATA
1 -TCAGT-TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA
23362204 ATCAAGTCAA
Statistics
Matches: 77, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
42 15 0.19
43 14 0.18
44 8 0.10
45 39 0.51
46 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (45 bp):
TCAGTTCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA
Found at i:23362586 original size:43 final size:43
Alignment explanation
Indices: 23362533--23362687 Score: 285
Period size: 43 Copynumber: 3.6 Consensus size: 43
23362523 CAGGCATTAC
23362533 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCA-TGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACT-AA
23362576 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
*
23362619 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGTACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
23362662 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
23362688 TAATGCCAGC
Statistics
Matches: 110, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
43 109 0.99
44 1 0.01
ACGTcount: A:0.30, C:0.33, G:0.25, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
Found at i:23375198 original size:47 final size:47
Alignment explanation
Indices: 23375130--23375706 Score: 922
Period size: 47 Copynumber: 12.3 Consensus size: 47
23375120 ACAAGATATG
*
23375130 TATATGTGATAAGGCCTAATGGCCAATGGGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
23375177 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
23375224 TATATGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCT-AATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
23375271 TATATGAGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
23375318 TATATGTGATAAAGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
23375365 TATATGTGATAAGGCCGAATGGTCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
23375412 TATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
23375459 TATATGTGATAAAGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
23375506 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
23375553 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * *
23375600 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * *
23375647 TATATATGATAAGGCCGAATGGGCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
23375694 TAAATGTGATAAG
1 TATATGTGATAAG
23375707 TCCCGAAGGG
Statistics
Matches: 489, Mismatches: 39, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
46 1 0.00
47 486 0.99
48 2 0.00
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:23375255 original size:22 final size:22
Alignment explanation
Indices: 23375180--23375255 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
23375170 AAGTGTATAT
*
23375180 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCTGAATGGCCA
* ***
23375202 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCTG-AA-TGGCCA
23375226 TATGTGATAAGGCTGAATGGCCA
1 -ATGTGATAAGGCTGAATGGCCA
23375249 ATGTGAT
1 ATGTGAT
23375256 GAATGTGAAA
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCTGAATGGCCA
Found at i:23379745 original size:48 final size:48
Alignment explanation
Indices: 23379702--23380018 Score: 375
Period size: 48 Copynumber: 6.6 Consensus size: 48
23379692 TAATGCTATG
* * * *
23379702 TCCCAGACATGGTCTTATACGGGACCTCATATCAATGCCAATGCCATA
1 TCCCAGATATGGTCTTATACGGGATCTCATATCGATGCCGATGCCATA
* * * * *
23379750 TTCCAGATATGGTCTTACATGGGATCTCATA-CTGATGTCGATGCCATG
1 TCCCAGATATGGTCTTATACGGGATCTCATATC-GATGCCGATGCCATA
* * * *
23379798 TCCCAAACATGGTCTTATACGGGACCTCTTATCGATGCCGATGCCATA
1 TCCCAGATATGGTCTTATACGGGATCTCATATCGATGCCGATGCCATA
* * * *
23379846 TCCAAAATATGGTCTTACACGGGATCTCATCTCGATGCCGATGCCATA
1 TCCCAGATATGGTCTTATACGGGATCTCATATCGATGCCGATGCCATA
* ** * *
23379894 TACCAGATATGGTCTTATATAGGATCTCTTATCGATGCTGATGCCATA
1 TCCCAGATATGGTCTTATACGGGATCTCATATCGATGCCGATGCCATA
* ** * *
23379942 TCCCAGATATGGTCTTACACGAAATCTCATCTCGATGTCGATGCCATA
1 TCCCAGATATGGTCTTATACGGGATCTCATATCGATGCCGATGCCATA
23379990 TCCCAGATATGGTCTTATACGGGATCTCA
1 TCCCAGATATGGTCTTATACGGGATCTCA
23380019 ATATTCACAT
Statistics
Matches: 221, Mismatches: 46, Indels: 4
0.82 0.17 0.01
Matches are distributed among these distances:
47 1 0.00
48 219 0.99
49 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (48 bp):
TCCCAGATATGGTCTTATACGGGATCTCATATCGATGCCGATGCCATA
Found at i:23379800 original size:96 final size:96
Alignment explanation
Indices: 23379702--23380018 Score: 422
Period size: 96 Copynumber: 3.3 Consensus size: 96
23379692 TAATGCTATG
* *
23379702 TCCCAGACATGGTCTTATACGGGACCTCATATCAATGCCAATGCCATATTCCAGATATGGTCTTA
1 TCCCAGACATGGTCTTATACGGGACCTCATATCGATGCCGATGCCATATTCCAGATATGGTCTTA
* *
23379767 CATGGGATCTCATACT-GATGTCGATGCCATG
66 CACGGGATCTCAT-CTCGATGTCGATGCCATA
* * *
23379798 TCCCAAACATGGTCTTATACGGGACCTCTTATCGATGCCGATGCCATA-TCCAAAATATGGTCTT
1 TCCCAGACATGGTCTTATACGGGACCTCATATCGATGCCGATGCCATATTCC-AGATATGGTCTT
*
23379862 ACACGGGATCTCATCTCGATGCCGATGCCATA
65 ACACGGGATCTCATCTCGATGTCGATGCCATA
* * ** * * * *
23379894 TACCAGATATGGTCTTATATAGGATCTCTTATCGATGCTGATGCCATATCCCAGATATGGTCTTA
1 TCCCAGACATGGTCTTATACGGGACCTCATATCGATGCCGATGCCATATTCCAGATATGGTCTTA
**
23379959 CACGAAATCTCATCTCGATGTCGATGCCATA
66 CACGGGATCTCATCTCGATGTCGATGCCATA
* *
23379990 TCCCAGATATGGTCTTATACGGGATCTCA
1 TCCCAGACATGGTCTTATACGGGACCTCA
23380019 ATATTCACAT
Statistics
Matches: 194, Mismatches: 24, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
95 5 0.03
96 187 0.96
97 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (96 bp):
TCCCAGACATGGTCTTATACGGGACCTCATATCGATGCCGATGCCATATTCCAGATATGGTCTTA
CACGGGATCTCATCTCGATGTCGATGCCATA
Found at i:23380149 original size:6 final size:6
Alignment explanation
Indices: 23380138--23380167 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
23380128 ATAAAGACAA
23380138 ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT
23380168 TTCATGCAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (6 bp):
ATACAT
Found at i:23384926 original size:106 final size:106
Alignment explanation
Indices: 23384740--23384951 Score: 415
Period size: 106 Copynumber: 2.0 Consensus size: 106
23384730 TATGATGGGT
23384740 CAAAGAAGAAACAAAGTGTTTCACCCTATTTACTATGCAAGTAGAACTGTGACGGAAGCCCAACT
1 CAAAGAAGAAACAAAGTGTTTCACCCTATTTACTATGCAAGTAGAACTGTGACGGAAGCCCAACT
23384805 CAATCATACGATAACTGAAAAGGAACTCTTTGCTATAGTTG
66 CAATCATACGATAACTGAAAAGGAACTCTTTGCTATAGTTG
23384846 CAAAGAAGAAACAAAGTGTTTCACCCTATTTACTATGCAAGTAGAACTGTGACGGAAGCCCAACT
1 CAAAGAAGAAACAAAGTGTTTCACCCTATTTACTATGCAAGTAGAACTGTGACGGAAGCCCAACT
*
23384911 CAATCATACGGTAACTGAAAAGGAACTCTTTGCTATAGTTG
66 CAATCATACGATAACTGAAAAGGAACTCTTTGCTATAGTTG
23384952 TTGCTTTTGA
Statistics
Matches: 105, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
106 105 1.00
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (106 bp):
CAAAGAAGAAACAAAGTGTTTCACCCTATTTACTATGCAAGTAGAACTGTGACGGAAGCCCAACT
CAATCATACGATAACTGAAAAGGAACTCTTTGCTATAGTTG
Found at i:23386827 original size:27 final size:27
Alignment explanation
Indices: 23386796--23386908 Score: 133
Period size: 27 Copynumber: 4.2 Consensus size: 27
23386786 ACGAAGCGTC
**
23386796 CTGGTGGCTAAGCCACAATTATCT-TAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
23386823 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACAT-TATCTGTAT
*
23386850 CTGGTGGCTCTGCCATGATTATCTGTAT
1 CTGGTGGCTCTGCCA-CATTATCTGTAT
* *
23386878 CTGGTGACTCTGTCACATTATCTGT-T
1 CTGGTGGCTCTGCCACATTATCTGTAT
23386904 CTGGT
1 CTGGT
23386909 AGCCAAGCTG
Statistics
Matches: 76, Mismatches: 6, Indels: 9
0.84 0.07 0.10
Matches are distributed among these distances:
26 8 0.11
27 51 0.67
28 17 0.22
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTATCTGTAT
Found at i:23392920 original size:8 final size:8
Alignment explanation
Indices: 23392907--23392938 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
23392897 CTAGATCGGC
23392907 AAAAGCCG
1 AAAAGCCG
23392915 AAAAGCCG
1 AAAAGCCG
*
23392923 AAATGCCG
1 AAAAGCCG
23392931 AAAAGCCG
1 AAAAGCCG
23392939 GTATTTTGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:23393368 original size:27 final size:26
Alignment explanation
Indices: 23393328--23393439 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
23393318 AGGAAGCGTC
*
23393328 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
23393355 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
23393382 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * * *
23393410 CTAGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
23393436 CTGG
1 CTGG
23393440 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 6 0.08
27 52 0.70
28 16 0.22
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:23393432 original size:54 final size:54
Alignment explanation
Indices: 23393328--23393439 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
23393318 AGGAAGCGTC
* *
23393328 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTGTT
* * *
23393382 CTGGTGGCTCTGCCACGATTATCTGTATCTAGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTAGTGACTCTGCCACATATATCTGTT
23393436 CTGG
1 CTGG
23393440 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 35 0.67
55 17 0.33
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTGTT
Found at i:23401733 original size:295 final size:295
Alignment explanation
Indices: 23401204--23407002 Score: 11002
Period size: 295 Copynumber: 19.8 Consensus size: 295
23401194 ACCAGACATG
23401204 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
1 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
*
23401269 TAGGATGGGTGACCTCCT-GGAAGTCCTCGTGTTGCACCCTACCAATTTTATATCTCATTAAATT
66 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCCAATTTTATATCTCATTAAATT
23401333 TTTTTCTATTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAAA
131 TTTTTCTATTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAAA
23401398 CGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATATA
196 CGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATATA
23401463 AATAGAATGCGCAAGAATTGACGGGTGCGATCATA
261 AATAGAATGCGCAAGAATTGACGGGTGCGATCATA
23401498 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
1 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
23401563 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCCAATTTTATATCTCATTAAATT
66 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCCAATTTTATATCTCATTAAA-T
23401628 TTTTTTCTA-TTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAA
130 TTTTTTCTATTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAA
23401692 ACGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATC-GGGGTAGCCTTTATAT
195 ACGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATAT
23401756 AAATAGAATGCGCAAGAATTGACGGGTGCGATCATA
260 AAATAGAATGCGCAAGAATTGACGGGTGCGATCATA
23401792 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
1 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
*
23401857 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCAATTTTATATCTCATTAAATT
66 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCCAATTTTATATCTCATTAAATT
23401922 TTTTTCTATTTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAA
131 TTTTTCTA-TTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAA
23401987 ACGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATAT
195 ACGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATAT
23402052 AAATAGAATGCGCAAGAATTGACGGGTGCGATCATA
260 AAATAGAATGCGCAAGAATTGACGGGTGCGATCATA
23402088 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTA-
1 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
* *
23402152 T----T-AG-GA--TCCTGGGAAGTCCTCGTGTTGCACCCTACCAATTTTATATCTCATTAAATT
66 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCCAATTTTATATCTCATTAAATT
23402209 TTTTTCTATTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAAA
131 TTTTTCTATTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAAA
23402274 CGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATATA
196 CGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATATA
23402339 AATAGAATGCGCAAGAATTGACGGGTGCGATCATA
261 AATAGAATGCGCAAGAATTGACGGGTGCGATCATA
*
23402374 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTTGTAC
1 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
*
23402439 TA-GTTGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCC-TCCAATTTTATATCTCATTAAATT
66 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCCAATTTTATATCTCATTAAA-T
23402502 TTTTTTCTATTTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGA
130 TTTTTTCTA-TTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGA
23402567 AACGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATA
194 AACGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATA
23402632 TAAATAGAATGCGCAAGAATTGACGGGTGCGATCATA
259 TAAATAGAATGCGCAAGAATTGACGGGTGCGATCATA
23402669 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
1 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
*
23402734 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCA-CCTCTCCTATTTTATATCTCATTAAAT
66 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCT-TCCAATTTTATATCTCATTAAAT
*
23402798 TTTTTTCTATTTTTTTATATCTCATCGTATAACTAATTAGTTATTTACGGAATAAATCACTCGAA
130 TTTTTTCTATTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAA
23402863 ACGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATAT
195 ACGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATAT
23402928 AAATAGAATGCGCAAGAATTGACGGGTGCGATCATA
260 AAATAGAATGCGCAAGAATTGACGGGTGCGATCATA
23402964 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
1 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
*
23403029 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTACCAATTTTATATCTCATTAAATT
66 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCCAATTTTATATCTCATTAAATT
23403094 TTTTTCTATTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAAA
131 TTTTTCTATTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAAA
23403159 CGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATATA
196 CGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATATA
23403224 AATAGAATGCGCAAGAATTGACGGGTGCGATCATA
261 AATAGAATGCGCAAGAATTGACGGGTGCGATCATA
23403259 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
1 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
23403324 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCC-TCCAATTTTATATCTCATTAAATT
66 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCCAATTTTATATCTCATTAAA-T
*
23403388 TTTTTTATATTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAA
130 TTTTTTCTATTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAA
23403453 ACGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATAT
195 ACGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATAT
23403518 AAATAGAATGCGCAAGAATTGACGGGTGCGATCATA
260 AAATAGAATGCGCAAGAATTGACGGGTGCGATCATA
23403554 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
1 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
*
23403619 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTACCAATTTTATATCTCATTAAATT
66 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCCAATTTTATATCTCATTAAATT
23403684 TTTTTCTATTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAAA
131 TTTTTCTATTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAAA
23403749 CGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATATA
196 CGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATATA
23403814 AATAGAATGCGCAAGAATTGACGGGTGCGATCATA
261 AATAGAATGCGCAAGAATTGACGGGTGCGATCATA
23403849 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
1 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
23403914 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCCAATTTTATATCTCATTAAATT
66 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCCAATTTTATATCTCATTAAA-T
23403979 TTTTTTCTATTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAA
130 TTTTTTCTATTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAA
23404044 ACGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATAT
195 ACGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATAT
23404109 AAATAGAATGCGCAAGAATTGACGGGTGCGATCATA
260 AAATAGAATGCGCAAGAATTGACGGGTGCGATCATA
23404145 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTA-
1 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
* **
23404209 T----T-AG-GA--TCCTGGGAAGTCCTCGTGTTGCACCCTTTAAATTTTATATCTCATTAAATT
66 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCCAATTTTATATCTCATTAAATT
23404266 TTTTTCTATTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAAA
131 TTTTTCTATTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAAA
23404331 CGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATATA
196 CGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATATA
23404396 AATAGAATGCGCAAGAATTGACGGGTGCGATCATA
261 AATAGAATGCGCAAGAATTGACGGGTGCGATCATA
23404431 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
1 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
23404496 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCCAATTTTATATCTCATTAAATT
66 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCCAATTTTATATCTCATTAAA-T
23404561 TTTTTTCT-TTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAA
130 TTTTTTCTATTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAA
23404625 ACGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATAT
195 ACGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATAT
23404690 AAATAGAATGCGCAAGAATTGACGGGTGCGATCATA
260 AAATAGAATGCGCAAGAATTGACGGGTGCGATCATA
23404726 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
1 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
23404791 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCC-TCCAATTTTATATCTCATTAAATT
66 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCCAATTTTATATCTCATTAAATT
23404855 TTTTTCT-TTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAAA
131 TTTTTCTATTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAAA
23404919 CGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATATA
196 CGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATATA
23404984 AATAGAATGCGCAAGAATTGACGGGTGCGATCATA
261 AATAGAATGCGCAAGAATTGACGGGTGCGATCATA
23405019 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
1 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
*
23405084 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTACCAATTTTATATCTCATTAAATT
66 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCCAATTTTATATCTCATTAAATT
23405149 TTTTTCTATTTTTTTTATATCTCATCG-TTAACTAATTAGTTATTTACGGAATAAATCACTCGAA
131 TTTTTCTA-TTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAA
23405213 ACGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCC-TT-TAT
195 ACGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATAT
23405276 AAATAGAATGCGCAAGAATTGACGGGTGCGATCATA
260 AAATAGAATGCGCAAGAATTGACGGGTGCGATCATA
23405312 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
1 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
*
23405377 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCAATTTTATATCTCATTAAATT
66 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCCAATTTTATATCTCATTAAATT
23405442 TTTTTCTATTTTTTTATATCTCATCG-TTAACTAATTAGTTATTTACGGAATAAATCACTCGAAA
131 TTTTTCTATTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAAA
23405506 CGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATATA
196 CGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATATA
23405571 AATAGAATGCGCAAGAATTGACGGGTGCGATCATA
261 AATAGAATGCGCAAGAATTGACGGGTGCGATCATA
23405606 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGTAGTAGTA
1 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAG-AGTAGTA
23405671 CTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCC-TCCAATTTTATA--TCATTAAAT
65 CTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCCAATTTTATATCTCATTAAA-
23405733 TTTTTTTCTA-TTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGA
129 TTTTTTTCTATTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGA
23405797 AACGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATA
194 AACGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATA
23405862 TAAATAGAATGCGCAAGAATTGACGGGTGCGATCATA
259 TAAATAGAATGCGCAAGAATTGACGGGTGCGATCATA
23405899 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
1 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
*
23405964 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTACCAATTTTATATCTCATTAAATT
66 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCCAATTTTATATCTCATTAAATT
23406029 TTTTTCTATTTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAA
131 TTTTTCTA-TTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAA
23406094 ACGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATAT
195 ACGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATAT
23406159 AAATAGAATGCGCAAGAATTGACGGGTGCGATCATA
260 AAATAGAATGCGCAAGAATTGACGGGTGCGATCATA
23406195 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
1 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
23406260 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCC-TCCAATTTTATATCTCATTAAATT
66 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCCAATTTTATATCTCATTAAA-T
23406324 TTTTTTCTATTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAA
130 TTTTTTCTATTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAA
23406389 ACGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATAT
195 ACGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATAT
23406454 AAATAGAATGCGCAAGAATTGACGGGTGCGATCATA
260 AAATAGAATGCGCAAGAATTGACGGGTGCGATCATA
23406490 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGT--TAC
1 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
23406553 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCC-TCCAATTTTATATCTCATTAAATT
66 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCCAATTTTATATCTCATTAAA-T
23406617 TTTTTTCTATTTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGA
130 TTTTTTCTA-TTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGA
23406682 AACGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAA-CGCGATCAGGGGTAGCCTTTATA
194 AACGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATA
23406746 TAAATAGAATGCGCAAGAATTGACGGGTGCGATCATA
259 TAAATAGAATGCGCAAGAATTGACGGGTGCGATCATA
23406783 CCAGCACTAATGCACCGGATCCCATCAGAACT-CGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
1 CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
23406847 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCCAATTTTATATCTCATTAAATT
66 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCCAATTTTATATCTCATTAAATT
23406912 TTTTTCTA-TTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAAA
131 TTTTTCTATTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAAA
23406976 CGTTATTTGGTCGTATTT-AATTCAAAT
196 CGTTATTTGGTCGTATTTAAATTCAAAT
23407003 CAGGCGCATG
Statistics
Matches: 5424, Mismatches: 31, Indels: 103
0.98 0.01 0.02
Matches are distributed among these distances:
286 451 0.08
287 106 0.02
289 4 0.00
290 3 0.00
291 13 0.00
292 290 0.05
293 865 0.16
294 640 0.12
295 2309 0.43
296 722 0.13
297 21 0.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (295 bp):
CCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCCAATTTTATATCTCATTAAATT
TTTTTCTATTTTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGGAATAAATCACTCGAAA
CGTTATTTGGTCGTATTTAAATTCAAATTCGAGGCTCAAGCGCGATCAGGGGTAGCCTTTATATA
AATAGAATGCGCAAGAATTGACGGGTGCGATCATA
Done.