Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 76 of 250
Found at i:24124458 original size:40 final size:40
Alignment explanation
Indices: 24124380--24124560 Score: 178
Period size: 40 Copynumber: 4.6 Consensus size: 40
24124370 GCTACTCGTT
*
24124380 CAAATGCCTTC-GGACATAGCCCG--TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATT-TAGTAACTCGCA
*
24124418 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATTTAGTAACTCGCA
* * *
24124458 CCAATGCCTTCGGG-CTTAGCCCGGAATTAAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GAATTTAGTAACTCGCA
* * * * * *
24124498 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGAATTTAGTAAC-TCGCA
24124539 CAAA-GCCTTC-GGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
24124561 GACATCATTC
Statistics
Matches: 120, Mismatches: 16, Indels: 13
0.81 0.11 0.09
Matches are distributed among these distances:
38 11 0.09
39 27 0.22
40 65 0.54
41 17 0.14
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGAATTTAGTAACTCGCA
Found at i:24126477 original size:46 final size:46
Alignment explanation
Indices: 24126410--24126584 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
24126400 TGTAACCCGC
*
24126410 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* * *
24126456 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * * *
24126506 -C-TCA-CGAACTCGGACTCAACTCAACAAGTTCAGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
24126549 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
24126585 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 59 0.57
47 25 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:24126529 original size:93 final size:93
Alignment explanation
Indices: 24126417--24126588 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
24126407 CGCCCATAAG
* * * *
24126417 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACAAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
24126482 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
24126510 CGAACTCGGACTCAACTCAACAAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACAAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
24126575 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
24126589 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACAAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:24133987 original size:46 final size:47
Alignment explanation
Indices: 24133920--24134047 Score: 206
Period size: 46 Copynumber: 2.8 Consensus size: 47
24133910 TGTAACCCAC
* * *
24133920 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGA-GTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGACATTCGCAT
24133966 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGACATTCGCAT
*
24134012 CCATAAGTGCACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
24134048 ATGCTCAACC
Statistics
Matches: 76, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
45 3 0.04
46 72 0.95
47 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.22, T:0.20
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGACATTCGCAT
Found at i:24136764 original size:40 final size:40
Alignment explanation
Indices: 24136669--24136918 Score: 292
Period size: 40 Copynumber: 6.3 Consensus size: 40
24136659 ACCCAAGTAT
* *** * *
24136669 CTTCGGGATTTAG-CCGGATATAACCACTTGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* * * * *
24136707 CGTCGGGTCTTAGCCCGGATATGGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* *
24136747 CTTCGGGACTTGGCCCGGATATAGTAACTCGTACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
*
24136787 CTTCGAGACTTAGCCCGGA-ATTAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGC
24136827 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* * * *
24136867 CTTCGGGACTTAGCCCGGA-ATTAATCACTAGCACAAATGT
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGC
24136907 CTTCGGGACTTA
1 CTTCGGGACTTA
24136919 ACCCCGTTAG
Statistics
Matches: 184, Mismatches: 23, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
38 10 0.05
39 18 0.10
40 155 0.84
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
Found at i:24142529 original size:47 final size:47
Alignment explanation
Indices: 24142470--24143051 Score: 885
Period size: 47 Copynumber: 12.4 Consensus size: 47
24142460 GATGTACAAG
* ** *
24142470 GTGTGTATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
24142517 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * *
24142564 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * *
24142611 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
24142658 GTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
24142705 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
24142752 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
24142799 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
24142846 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * * *
24142893 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * ** * *
24142940 GTGTATATATGAGATAAGACCTAATGGCTGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
24142987 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
24143034 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
24143052 TCCCGAAGGG
Statistics
Matches: 501, Mismatches: 34, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 501 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:24142694 original size:22 final size:22
Alignment explanation
Indices: 24142666--24142788 Score: 63
Period size: 22 Copynumber: 5.3 Consensus size: 22
24142656 AAGTGTGTAT
24142666 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
24142688 ATGTGATGAATG-TGAAAGTGTG-TA
1 ATGTGAT-AAGGCCG-AA-TG-GCCA
*
24142712 TATGTGATAAGGCCTAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* * ***
24142735 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
24142759 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
24142782 ATGTGAT
1 ATGTGAT
24142789 GAATGTGAAA
Statistics
Matches: 71, Mismatches: 18, Indels: 24
0.63 0.16 0.21
Matches are distributed among these distances:
22 23 0.32
23 16 0.23
24 16 0.23
25 16 0.23
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:24146414 original size:8 final size:8
Alignment explanation
Indices: 24146401--24146430 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
24146391 CTAGATCGGC
24146401 AAAAGCCG
1 AAAAGCCG
24146409 AAAAGCCG
1 AAAAGCCG
*
24146417 AAATGCCG
1 AAAAGCCG
24146425 AAAAGC
1 AAAAGC
24146431 TGGCATTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.23, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:24146881 original size:27 final size:26
Alignment explanation
Indices: 24146843--24146929 Score: 113
Period size: 27 Copynumber: 3.3 Consensus size: 26
24146833 TGGAGGAAGC
24146843 GTTCTGGTGGCTAC-GCCACAAATATCT
1 GTTCTGGTGGCT-CTGCCAC-AATATCT
24146870 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
24146896 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
24146923 GTTCTGG
1 GTTCTGG
24146930 CAGCCATGCT
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
26 14 0.26
27 40 0.74
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:24151556 original size:17 final size:18
Alignment explanation
Indices: 24151526--24151561 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
24151516 TATGAGAAAG
24151526 AAAAGAAAAATGAAATGA
1 AAAAGAAAAATGAAATGA
*
24151544 AAAAG-AAATTGAAATGA
1 AAAAGAAAAATGAAATGA
24151561 A
1 A
24151562 GAATGAGAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.14
Consensus pattern (18 bp):
AAAAGAAAAATGAAATGA
Found at i:24166570 original size:21 final size:23
Alignment explanation
Indices: 24166533--24166585 Score: 74
Period size: 22 Copynumber: 2.3 Consensus size: 23
24166523 AATCACAACT
24166533 TTTAGACACCATAAA-TTGCAGCA
1 TTTA-ACACCATAAATTTGCAGCA
*
24166556 TTTAACACC-TAAATTTTCAGCA
1 TTTAACACCATAAATTTGCAGCA
24166578 TTTAACAC
1 TTTAACAC
24166586 ATATAATGGT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 4 0.14
22 20 0.71
23 4 0.14
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.32
Consensus pattern (23 bp):
TTTAACACCATAAATTTGCAGCA
Found at i:24168495 original size:26 final size:26
Alignment explanation
Indices: 24168429--24168489 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
24168419 TATTTAAAAG
24168429 AATTA-GATAAAATTTGAAATCTTGAA
1 AATTATGA-AAAATTTGAAATCTTGAA
* *
24168455 AATTATTAAAAATTTGAAATCTTTAA
1 AATTATGAAAAATTTGAAATCTTGAA
24168481 AATT-TGAAA
1 AATTATGAAA
24168490 TTATTTAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 4 0.13
26 26 0.84
27 1 0.03
ACGTcount: A:0.51, C:0.03, G:0.08, T:0.38
Consensus pattern (26 bp):
AATTATGAAAAATTTGAAATCTTGAA
Found at i:24168496 original size:17 final size:17
Alignment explanation
Indices: 24168440--24168497 Score: 64
Period size: 16 Copynumber: 3.4 Consensus size: 17
24168430 ATTAGATAAA
*
24168440 ATTTGAAATCTTGAAAATT
1 ATTTAAAAT-TTG-AAATT
*
24168459 ATTAAAAATTTGAAA-T
1 ATTTAAAATTTGAAATT
*
24168475 CTTTAAAATTTGAAATT
1 ATTTAAAATTTGAAATT
24168492 ATTTAA
1 ATTTAA
24168498 TATATAAATT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
16 14 0.42
17 9 0.27
18 3 0.09
19 7 0.21
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.43
Consensus pattern (17 bp):
ATTTAAAATTTGAAATT
Found at i:24169225 original size:14 final size:15
Alignment explanation
Indices: 24169206--24169234 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
24169196 TAAACTCCAA
24169206 CCCTAAA-CCATAAT
1 CCCTAAACCCATAAT
24169220 CCCTAAACCCATAAT
1 CCCTAAACCCATAAT
24169235 TCATCATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.41, C:0.38, G:0.00, T:0.21
Consensus pattern (15 bp):
CCCTAAACCCATAAT
Found at i:24169282 original size:14 final size:14
Alignment explanation
Indices: 24169265--24169318 Score: 54
Period size: 14 Copynumber: 3.9 Consensus size: 14
24169255 CTAATTAACT
*
24169265 CCTAAACCTTAAAC
1 CCTAAACCATAAAC
* * *
24169279 CCTAAATCATATAT
1 CCTAAACCATAAAC
*
24169293 CATAAACCATAAAC
1 CCTAAACCATAAAC
*
24169307 CCTAAACTATAA
1 CCTAAACCATAA
24169319 TGATAATTAA
Statistics
Matches: 30, Mismatches: 10, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.24
Consensus pattern (14 bp):
CCTAAACCATAAAC
Found at i:24169529 original size:7 final size:7
Alignment explanation
Indices: 24169461--24169565 Score: 59
Period size: 7 Copynumber: 14.9 Consensus size: 7
24169451 ATTAATTAAT
24169461 CTAAACC
1 CTAAACC
*
24169468 TTAAACTC
1 CTAAAC-C
*
24169476 CTAATCC
1 CTAAACC
*
24169483 CTAATCC
1 CTAAACC
24169490 CTAAACC
1 CTAAACC
* *
24169497 ATAAGCC
1 CTAAACC
* *
24169504 TTAAATC
1 CTAAACC
**
24169511 CTAAAAT
1 CTAAACC
*
24169518 ATAAACC
1 CTAAACC
24169525 CTAAACC
1 CTAAACC
* *
24169532 CTTACCC
1 CTAAACC
*
24169539 CTAAACT
1 CTAAACC
*
24169546 TTAAACC
1 CTAAACC
24169553 CT-AACC
1 CTAAACC
24169559 CTTAAAC
1 C-TAAAC
24169566 TGTAATCCCT
Statistics
Matches: 71, Mismatches: 24, Indels: 5
0.71 0.24 0.05
Matches are distributed among these distances:
6 5 0.07
7 58 0.82
8 8 0.11
ACGTcount: A:0.40, C:0.34, G:0.01, T:0.25
Consensus pattern (7 bp):
CTAAACC
Found at i:24169566 original size:21 final size:21
Alignment explanation
Indices: 24169526--24169577 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
24169516 ATATAAACCC
* *
24169526 TAAACCCTTACCCCTAAACTT
1 TAAACCCTAACCCCTAAACTG
*
24169547 TAAACCCTAACCCTTAAACTG
1 TAAACCCTAACCCCTAAACTG
*
24169568 TAATCCCTAA
1 TAAACCCTAA
24169578 GCCCATAATC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.37, C:0.35, G:0.02, T:0.27
Consensus pattern (21 bp):
TAAACCCTAACCCCTAAACTG
Found at i:24171693 original size:45 final size:46
Alignment explanation
Indices: 24171619--24171794 Score: 205
Period size: 45 Copynumber: 3.8 Consensus size: 46
24171609 TGTAACCCAC
*
24171619 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
* * *
24171665 CCATAAGTGAACTC-GACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-TTCGCAT
* *** * **
24171710 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTC-GACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
*
24171756 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG
24171795 CTCAACCATC
Statistics
Matches: 105, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
45 56 0.53
46 31 0.30
47 18 0.17
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
Found at i:24171738 original size:92 final size:92
Alignment explanation
Indices: 24171627--24171795 Score: 277
Period size: 92 Copynumber: 1.8 Consensus size: 92
24171617 ACCCATAAGT
***
24171627 GAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTC-GACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTC-GACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
24171691 CGAGCTCGGATGCCTAGTTACATCTCTC
65 CGAGCTCGGATGCCTAGTTACATCTCTC
*
24171719 GAACTCGGACTCAACTCAACGAGTTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
24171784 GAGTTCGGATGC
66 GAGCTCGGATGC
24171796 TCAACCATCC
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
91 22 0.31
92 49 0.69
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTC
Found at i:24174203 original size:15 final size:15
Alignment explanation
Indices: 24174179--24174226 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
24174169 AGGAAACCGA
24174179 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
24174194 ATAGAGAAATCC-AG
1 ATAAAGAAATCCAAG
*
24174208 AATAAAGAAACCCAAG
1 -ATAAAGAAATCCAAG
24174224 ATA
1 ATA
24174227 CGATACTATG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 2 0.07
15 24 0.86
16 2 0.07
ACGTcount: A:0.58, C:0.15, G:0.15, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:24177284 original size:93 final size:93
Alignment explanation
Indices: 24177158--24177328 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
24177148 GCCCATAAGT
*
24177158 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAAATCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAAATCAA
24177223 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
24177251 GAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAAATCAA
*
24177316 CGAGTTCGGATGC
66 CGAGCTCGGATGC
24177329 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAAATCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:24177325 original size:46 final size:46
Alignment explanation
Indices: 24177150--24177325 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
24177140 TGTAACCCGC
*
24177150 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
24177196 CCATAAGTGAACTCGGACTCAAATCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** * *
24177242 ACATCTCTCGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
24177289 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
24177326 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
46 68 0.63
47 30 0.28
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:24180344 original size:16 final size:16
Alignment explanation
Indices: 24180323--24180357 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
24180313 ACTGTTACGA
* *
24180323 AAATATATATTTTTAT
1 AAATATAAAATTTTAT
24180339 AAATATAAAATTTTAT
1 AAATATAAAATTTTAT
24180355 AAA
1 AAA
24180358 GATTATAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
AAATATAAAATTTTAT
Found at i:24180850 original size:43 final size:43
Alignment explanation
Indices: 24180793--24180879 Score: 131
Period size: 43 Copynumber: 2.0 Consensus size: 43
24180783 AAAGTTGTCA
* *
24180793 ACATTTACTGTATAAAATA-TTTTAAAAATGATTAAAATTATAT
1 ACATCTACCGTATAAAATATTTTTAAAAAT-ATTAAAATTATAT
*
24180836 ACATCTACCGTATAAAATATTTTTAAAACTATTAAAATTATAT
1 ACATCTACCGTATAAAATATTTTTAAAAATATTAAAATTATAT
24180879 A
1 A
24180880 TTTTCTGAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
43 31 0.77
44 9 0.22
ACGTcount: A:0.48, C:0.08, G:0.03, T:0.40
Consensus pattern (43 bp):
ACATCTACCGTATAAAATATTTTTAAAAATATTAAAATTATAT
Found at i:24181420 original size:34 final size:34
Alignment explanation
Indices: 24181376--24181441 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
24181366 CAGGAAAAGA
24181376 AGTTACATTATTTCATTAATTATTAAATTATAGC
1 AGTTACATTATTTCATTAATTATTAAATTATAGC
* *
24181410 AGTTAGATTATTTTATTAATTATTAAATTATA
1 AGTTACATTATTTCATTAATTATTAAATTATA
24181442 AGTTCCTTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.39, C:0.05, G:0.06, T:0.50
Consensus pattern (34 bp):
AGTTACATTATTTCATTAATTATTAAATTATAGC
Found at i:24183218 original size:29 final size:29
Alignment explanation
Indices: 24183178--24183236 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
24183168 AAGGACTAAA
24183178 TTGCTATTTTTATAGTAGAGGAGCTAATT
1 TTGCTATTTTTATAGTAGAGGAGCTAATT
24183207 TTGCTATTTTTATAGTAGAGGAGCTAATT
1 TTGCTATTTTTATAGTAGAGGAGCTAATT
24183236 T
1 T
24183237 ACTCCTAAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.27, C:0.07, G:0.20, T:0.46
Consensus pattern (29 bp):
TTGCTATTTTTATAGTAGAGGAGCTAATT
Found at i:24185368 original size:13 final size:14
Alignment explanation
Indices: 24185338--24185375 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
24185328 GTTTACATGT
* *
24185338 AAAAGATTTTATGA
1 AAAATATTTTACGA
24185352 AAAATATTTTACGA
1 AAAATATTTTACGA
24185366 AAAATATTTT
1 AAAATATTTT
24185376 CTACATTTCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.50, C:0.03, G:0.08, T:0.39
Consensus pattern (14 bp):
AAAATATTTTACGA
Found at i:24194110 original size:20 final size:21
Alignment explanation
Indices: 24194081--24194132 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
24194071 CGGGTTAGGG
24194081 ACACGGGCGTGTC-CCAAAGC
1 ACACGGGCGTGTCTCCAAAGC
*
24194101 ACACGAGCGTG-CTCCAAAGC
1 ACACGGGCGTGTCTCCAAAGC
*
24194121 ATACGGGCGTGT
1 ACACGGGCGTGT
24194133 GCATTGTCTC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 1 0.04
20 26 0.96
ACGTcount: A:0.25, C:0.31, G:0.31, T:0.13
Consensus pattern (21 bp):
ACACGGGCGTGTCTCCAAAGC
Found at i:24200882 original size:29 final size:29
Alignment explanation
Indices: 24200840--24200921 Score: 146
Period size: 29 Copynumber: 2.8 Consensus size: 29
24200830 TATATATGTG
24200840 AATTATCGAGCACTAAGTGTGCGAAGTAA
1 AATTATCGAGCACTAAGTGTGCGAAGTAA
24200869 AATTATCGAGCACTAAGTGTGCGAAGTAA
1 AATTATCGAGCACTAAGTGTGCGAAGTAA
* *
24200898 AACTACCGAGCACTAAGTGTGCGA
1 AATTATCGAGCACTAAGTGTGCGA
24200922 TCTCATTGCA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (29 bp):
AATTATCGAGCACTAAGTGTGCGAAGTAA
Found at i:24203884 original size:10 final size:10
Alignment explanation
Indices: 24203871--24203905 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
24203861 GCCCATTTCA
24203871 GCCCATAGAG
1 GCCCATAGAG
24203881 GCCCATAGAG
1 GCCCATAGAG
24203891 GCCCAT-GACG
1 GCCCATAGA-G
24203901 GCCCA
1 GCCCA
24203906 AGCCCATGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 2 0.08
10 22 0.92
ACGTcount: A:0.26, C:0.37, G:0.29, T:0.09
Consensus pattern (10 bp):
GCCCATAGAG
Found at i:24204166 original size:49 final size:49
Alignment explanation
Indices: 24204094--24204210 Score: 198
Period size: 49 Copynumber: 2.4 Consensus size: 49
24204084 GTTACAGAAT
** *
24204094 GGTGTACGGTTACACACCTACATTCATCATTGAACATAGAGTAAGGTTG
1 GGTGTACGACTACACACCTACATTCATCATTGAACACAGAGTAAGGTTG
*
24204143 GGTGTACGACTACACACCTACATTCATCATTGCACACAGAGTAAGGTTG
1 GGTGTACGACTACACACCTACATTCATCATTGAACACAGAGTAAGGTTG
24204192 GGTGTACGACTACACACCT
1 GGTGTACGACTACACACCT
24204211 TGATTTGCGA
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 64 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (49 bp):
GGTGTACGACTACACACCTACATTCATCATTGAACACAGAGTAAGGTTG
Found at i:24204870 original size:27 final size:27
Alignment explanation
Indices: 24204797--24204873 Score: 109
Period size: 27 Copynumber: 2.9 Consensus size: 27
24204787 GACAGAGAGA
* *
24204797 AGGGGTATTACGATCACTTTACCCTAC
1 AGGGGCATTACGATCATTTTACCCTAC
*
24204824 AGGGGCTTTACGATCATTTTACCCTAC
1 AGGGGCATTACGATCATTTTACCCTAC
* *
24204851 AGGGGCATTACGGTCTTTTTACC
1 AGGGGCATTACGATCATTTTACC
24204874 TATTAGGTGT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.22, C:0.25, G:0.21, T:0.32
Consensus pattern (27 bp):
AGGGGCATTACGATCATTTTACCCTAC
Found at i:24204965 original size:27 final size:27
Alignment explanation
Indices: 24204932--24205195 Score: 122
Period size: 27 Copynumber: 9.7 Consensus size: 27
24204922 TCTACAACCC
*
24204932 AAGGGTATTTCAGTAATTTTGCAAACT
1 AAGGGTATTTCAGTAATTTTGCAAATT
*
24204959 AATGGTATTTCTA-TAATTTATG-AAAGTT
1 AAGGGTATTTC-AGTAATTT-TGCAAA-TT
*
24204987 AAGGGTATTTCTGTAATTTT-CTAAATT
1 AAGGGTATTTCAGTAATTTTGC-AAATT
* ** *
24205014 AAGGGTATTTCAGTACTTTTTTAAATC
1 AAGGGTATTTCAGTAATTTTGCAAATT
* ** * * *
24205041 AGGGGTATTTTGGTAACTTTACAAATC
1 AAGGGTATTTCAGTAATTTTGCAAATT
** * * * *
24205068 GTGGGTATTTCGGTAATTTTACAAGTC
1 AAGGGTATTTCAGTAATTTTGCAAATT
* ** ** *
24205095 AAAGGTATTTC-GATAATTTTATAGGTC
1 AAGGGTATTTCAG-TAATTTTGCAAATT
* * **
24205122 GAGGGTATTTTAGTAATTTCACAAATT
1 AAGGGTATTTCAGTAATTTTGCAAATT
* ** * *
24205149 AGGGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTCAGTAATTTTGCAAATT
* **
24205176 AGGGGTATTTTGGTAATTTT
1 AAGGGTATTTCAGTAATTTT
24205196 ATAAACCAAG
Statistics
Matches: 190, Mismatches: 38, Indels: 18
0.77 0.15 0.07
Matches are distributed among these distances:
26 1 0.01
27 165 0.87
28 24 0.13
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (27 bp):
AAGGGTATTTCAGTAATTTTGCAAATT
Found at i:24205074 original size:54 final size:53
Alignment explanation
Indices: 24205016--24205247 Score: 185
Period size: 54 Copynumber: 4.3 Consensus size: 53
24205006 TCTAAATTAA
* ** * *
24205016 GGGTATTTCAGTACTTTTTTAAATCAGGGGTATTTTGGTAACTTTACAAATCG
1 GGGTATTTCAGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAATCG
* * * * * * **
24205069 TGGGTATTTCGGTAATTTTACAAGTCAAAGGTATTTCGATAATTTTATAGGTCG
1 -GGGTATTTCAGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAATCG
* * * * *
24205123 AGGGTATTTTAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTAG
1 -GGGTATTTCAGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAA-TCG
** * * * ** *
24205178 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTCTACCCTATAG
1 GGGTATTTCAGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTA-CAAATCG
*
24205232 GGGTATTTCAATAATT
1 GGGTATTTCAGTAATT
24205248 CTACCCTATA
Statistics
Matches: 137, Mismatches: 39, Indels: 4
0.76 0.22 0.02
Matches are distributed among these distances:
54 133 0.97
55 4 0.03
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (53 bp):
GGGTATTTCAGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAATCG
Found at i:24205102 original size:81 final size:81
Alignment explanation
Indices: 24204989--24205220 Score: 206
Period size: 81 Copynumber: 2.9 Consensus size: 81
24204979 TGAAAGTTAA
* * * * *
24204989 GGGTATTTCTGTAATTTT-CTAAATTAAGGGTATTTC-AGTACTTTTTTAAATC-AGGGGTATTT
1 GGGTATTTCGGTAATTTTAC-AAATCAAAGGTATTTCGA-TAATTTTATAAATCGA-GGGTATTT
* *
24205051 TGGTAACTTT-ACAAA-TCG
63 TAGTAA-TTTCACAAATTAG
* **
24205069 TGGGTATTTCGGTAATTTTACAAGTCAAAGGTATTTCGATAATTTTATAGGTCGAGGGTATTTTA
1 -GGGTATTTCGGTAATTTTACAAATCAAAGGTATTTCGATAATTTTATAAATCGAGGGTATTTTA
24205134 GTAATTTCACAAATTAG
65 GTAATTTCACAAATTAG
* ** * * * * *
24205151 GGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTG
1 GGGTATTTCGGTAATTTTACAAATC-AAAGGTATTTCGATAATTTTATAAATCGAGGGTATTTTA
24205215 GTAATT
65 GTAATT
24205221 CTACCCTATA
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
80 4 0.03
81 115 0.93
82 5 0.04
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (81 bp):
GGGTATTTCGGTAATTTTACAAATCAAAGGTATTTCGATAATTTTATAAATCGAGGGTATTTTAG
TAATTTCACAAATTAG
Found at i:24205196 original size:27 final size:27
Alignment explanation
Indices: 24205041--24205220 Score: 150
Period size: 27 Copynumber: 6.7 Consensus size: 27
24205031 TTTTTAAATC
*
24205041 AGGGGTATTTTGGTAACTTTACAAA-T
1 AGGGGTATTTTGGTAATTTTACAAACT
* * *
24205067 CGTGGGTATTTCGGTAATTTTAC-AAGT
1 AG-GGGTATTTTGGTAATTTTACAAACT
** * * * **
24205094 CAAAGGTATTTCGATAATTTTA-TAGGT
1 -AGGGGTATTTTGGTAATTTTACAAACT
* * * *
24205121 CGAGGGTATTTTAGTAATTTCACAAATT
1 AG-GGGTATTTTGGTAATTTTACAAACT
24205149 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
* *
24205176 AGGGGTATTTTGGTAATTTTATAAACC
1 AGGGGTATTTTGGTAATTTTACAAACT
*
24205203 AAGGGTATTTTGGTAATT
1 AGGGGTATTTTGGTAATT
24205221 CTACCCTATA
Statistics
Matches: 123, Mismatches: 25, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
26 3 0.02
27 117 0.95
28 3 0.02
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:24205235 original size:27 final size:27
Alignment explanation
Indices: 24205148--24205293 Score: 102
Period size: 27 Copynumber: 5.4 Consensus size: 27
24205138 TTTCACAAAT
* **
24205148 TAGGGGTATTTTGGTAATTTTA-CAAA
1 TAGGGGTATTTTGGTAATTCTACCCTA
* *
24205174 CTAGGGGTATTTTGGTAATTTTATAAACC-A
1 -TAGGGGTATTTTGGTAA--TTCT-ACCCTA
24205204 -A-GGGTATTTTGGTAATTCTACCCTA
1 TAGGGGTATTTTGGTAATTCTACCCTA
***
24205229 TAGGGGTATTTCAATAATTCTACCCTA
1 TAGGGGTATTTTGGTAATTCTACCCTA
* ** *
24205256 TAAGGGTATTTCAGTAATTCTACCTTA
1 TAGGGGTATTTTGGTAATTCTACCCTA
* *
24205283 CAAGGGTATTT
1 TAGGGGTATTT
24205294 CAGTAATGCT
Statistics
Matches: 101, Mismatches: 11, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
24 3 0.03
25 4 0.04
26 1 0.01
27 86 0.85
28 1 0.01
29 3 0.03
30 2 0.02
31 1 0.01
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (27 bp):
TAGGGGTATTTTGGTAATTCTACCCTA
Found at i:24205294 original size:27 final size:27
Alignment explanation
Indices: 24205202--24205311 Score: 139
Period size: 27 Copynumber: 4.1 Consensus size: 27
24205192 TTTTATAAAC
**
24205202 CAAGGGTATTTTGGTAATTCTACCCTA
1 CAAGGGTATTTCAGTAATTCTACCCTA
* * *
24205229 TAGGGGTATTTCAATAATTCTACCCTA
1 CAAGGGTATTTCAGTAATTCTACCCTA
* *
24205256 TAAGGGTATTTCAGTAATTCTACCTTA
1 CAAGGGTATTTCAGTAATTCTACCCTA
* *
24205283 CAAGGGTATTTCAGTAATGCTAGCCTA
1 CAAGGGTATTTCAGTAATTCTACCCTA
24205310 CA
1 CA
24205312 GATATGAGAT
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 71 1.00
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.35
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTCTACCCTA
Found at i:24217711 original size:22 final size:22
Alignment explanation
Indices: 24217663--24217712 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
24217653 AAGCTTTATT
* * * *
24217663 AAGCTGAATGGGAAGCTCTTTC
1 AAGCTAAACGGGAAGCTCATAC
*
24217685 TAGCTAAACGGGAAGCTCATAC
1 AAGCTAAACGGGAAGCTCATAC
24217707 AAGCTA
1 AAGCTA
24217713 TGGTGAGTCC
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (22 bp):
AAGCTAAACGGGAAGCTCATAC
Found at i:24219597 original size:64 final size:66
Alignment explanation
Indices: 24219424--24219671 Score: 224
Period size: 64 Copynumber: 3.8 Consensus size: 66
24219414 CATAATTTTG
* * * *
24219424 GCTCTCTTGTAC-ACATAGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTA-TCTCG
1 GCTCTCTTGT-CTACATGGTGTACACATAGTACCACCCATGTGACCTAGCTACAGTATATTCTCG
24219485 TA
65 TA
* * * * ** *
24219487 GCTCTCTTGTCTACATGGTGTCCACCTGGAACCACGTATGCGACCTAGCTACA-TATATTC-CGT
1 GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGTGACCTAGCTACAGTATATTCTCGT
24219550 A
66 A
* * *
24219551 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGTAACCTAGCTACATTATAATGTCTC
1 GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGTGACCTAGCTACAGTAT-AT-TCTC
24219616 GTA
64 GTA
* * * **
24219619 GCTCTCTTGTAC-ACATGATGTGCAC-TCAGCACCATACATGTGACCTAGCTACA
1 GCTCTCTTGT-CTACATGGTGTACACAT-AGTACCACCCATGTGACCTAGCTACA
24219672 TACCATCTGT
Statistics
Matches: 149, Mismatches: 26, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
62 1 0.01
63 38 0.26
64 51 0.34
65 7 0.05
66 2 0.01
67 3 0.02
68 46 0.31
69 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (66 bp):
GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGTGACCTAGCTACAGTATATTCTCGT
A
Found at i:24229083 original size:14 final size:14
Alignment explanation
Indices: 24229064--24229091 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
24229054 TAATTCCGGG
24229064 CTAAATCCGGGTTA
1 CTAAATCCGGGTTA
24229078 CTAAATCCGGGTTA
1 CTAAATCCGGGTTA
24229092 AGTCCCGAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (14 bp):
CTAAATCCGGGTTA
Found at i:24229162 original size:40 final size:40
Alignment explanation
Indices: 24229084--24229167 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
24229074 GTTACTAAAT
* ** *
24229084 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATAA
* *
24229124 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTATAA
24229164 CCGG
1 CCGG
24229168 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 1 0.03
40 36 0.97
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATAA
Found at i:24239245 original size:93 final size:93
Alignment explanation
Indices: 24239133--24239304 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
24239123 CGCCCATAAG
*
24239133 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
24239197 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
24239226 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
24239291 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
24239305 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:24239299 original size:46 final size:46
Alignment explanation
Indices: 24239126--24239301 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
24239116 TGTAACCCGC
* *
24239126 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
24239172 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
24239222 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
24239265 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
24239302 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:24251781 original size:92 final size:92
Alignment explanation
Indices: 24251638--24251806 Score: 216
Period size: 93 Copynumber: 1.8 Consensus size: 92
24251628 ATTGACAACA
* * * *
24251638 TTTATCTGGAAACCCGTTGTACATTCATAACCTACTGACAATGTATGAACCTGCAAGTA-TTGGT
1 TTTATCTGCAAACCCGTTGTACATTCACAACCTACTGACAATGTATGAACCTACAA-CACTT-GT
*
24251702 GGTTTATCCACAAATTTTACTAGCACACT
64 GGTTCATCCACAAATTTTACTAGCACACT
* ** * *
24251731 TTTATCTGCAACCCCGTTGTGTATTCACAA-CTACTGACACTGTATTAACCTACAACACTTGTGG
1 TTTATCTGCAAACCCGTTGTACATTCACAACCTACTGACAATGTATGAACCTACAACACTTGTGG
24251795 TTCATCCACAAA
66 TTCATCCACAAA
24251807 CTAGAGTGTC
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
91 16 0.25
92 24 0.37
93 25 0.38
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.33
Consensus pattern (92 bp):
TTTATCTGCAAACCCGTTGTACATTCACAACCTACTGACAATGTATGAACCTACAACACTTGTGG
TTCATCCACAAATTTTACTAGCACACT
Found at i:24257539 original size:19 final size:19
Alignment explanation
Indices: 24257515--24257559 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
24257505 GCAAAAGCTA
24257515 AAAAATTACTTTTGAATTC
1 AAAAATTACTTTTGAATTC
* * *
24257534 AAAAA-TATTTTTGACTTT
1 AAAAATTACTTTTGAATTC
24257552 AAAAATTA
1 AAAAATTA
24257560 TGGTCCCAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 15 0.68
19 7 0.32
ACGTcount: A:0.47, C:0.07, G:0.04, T:0.42
Consensus pattern (19 bp):
AAAAATTACTTTTGAATTC
Found at i:24257702 original size:12 final size:14
Alignment explanation
Indices: 24257682--24257720 Score: 55
Period size: 12 Copynumber: 2.9 Consensus size: 14
24257672 AGAAAAAAAA
24257682 TATTTTAATTTTTC
1 TATTTTAATTTTTC
*
24257696 -A-TTTAATTTCTC
1 TATTTTAATTTTTC
24257708 TATTTTAATTTTT
1 TATTTTAATTTTT
24257721 AAATTTCTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
12 10 0.48
13 2 0.10
14 9 0.43
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (14 bp):
TATTTTAATTTTTC
Found at i:24271446 original size:20 final size:20
Alignment explanation
Indices: 24271421--24271463 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
24271411 CAACCCAATT
*
24271421 TTTTATTTTTCT-TTATTTTA
1 TTTTATTTTT-TATTACTTTA
24271441 TTTTATTTTTTATTACTTTA
1 TTTTATTTTTTATTACTTTA
24271461 TTT
1 TTT
24271464 GGATATTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 1 0.05
20 20 0.95
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTTATTTTTTATTACTTTA
Found at i:24273585 original size:24 final size:25
Alignment explanation
Indices: 24273552--24273599 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 25
24273542 TTAATTAGAT
24273552 AAATATTATTTTATTAATATTTTAA
1 AAATATTATTTTATTAATATTTTAA
*
24273577 AAATA-TATTTTATTATTATTTTA
1 AAATATTATTTTATTAATATTTTA
24273600 TTAGTATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (25 bp):
AAATATTATTTTATTAATATTTTAA
Found at i:24274905 original size:24 final size:24
Alignment explanation
Indices: 24274873--24274943 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
24274863 ATGTCAGGAG
24274873 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
24274897 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
24274921 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
24274944 GGAAATCTAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.35, C:0.01, G:0.38, T:0.25
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:24274955 original size:48 final size:48
Alignment explanation
Indices: 24274873--24274966 Score: 111
Period size: 48 Copynumber: 1.9 Consensus size: 48
24274863 ATGTCAGGAG
** * *
24274873 AGGATTTAGGAGTTGATAAGGGATAGGATTTAGGAGTTGAT-AAGGGAT
1 AGGATTTAGGAGCAGATAAGGGA-AGGATCTAGGAGCTGATCAAGGGAT
24274921 AGGATTTAGGAGCAGATAAGGG-AGGAAATCTAGGAGCTGATCAAGG
1 AGGATTTAGGAGCAGATAAGGGAAGG--ATCTAGGAGCTGATCAAGG
24274967 AACAAGAGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
46 3 0.08
48 32 0.82
49 4 0.10
ACGTcount: A:0.35, C:0.04, G:0.37, T:0.23
Consensus pattern (48 bp):
AGGATTTAGGAGCAGATAAGGGAAGGATCTAGGAGCTGATCAAGGGAT
Found at i:24276416 original size:27 final size:26
Alignment explanation
Indices: 24276358--24276470 Score: 136
Period size: 27 Copynumber: 4.2 Consensus size: 26
24276348 AGGAAGCGTC
* *
24276358 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
24276386 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
24276413 CTGGTGGTTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
24276441 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
24276467 CTGG
1 CTGG
24276471 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
26 7 0.09
27 38 0.50
28 31 0.41
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:24276443 original size:55 final size:54
Alignment explanation
Indices: 24276358--24276470 Score: 156
Period size: 55 Copynumber: 2.1 Consensus size: 54
24276348 AGGAAGCGTC
*
24276358 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* * * *
24276413 CTGGTGGTTCTGCCAC-GATTATCTGTATCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTG-ATCTGGTGACTCTGCCACATTATCTGTT
24276467 CTGG
1 CTGG
24276471 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
54 20 0.38
55 32 0.62
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:24279243 original size:94 final size:95
Alignment explanation
Indices: 24279133--24279334 Score: 289
Period size: 94 Copynumber: 2.1 Consensus size: 95
24279123 GTTATGTGAG
* * *
24279133 AGCCAGTATAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGGGCTAGTGTAAGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATAGAGACGAGGGCCAGTGTAAGACATG
*
24279198 TCTGGGACATGCATCAGCCAC-ATTATGAT
66 TCTGGGACATGCATCAGCCACGATGATGAT
* * * * * *
24279227 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCGTAGAGATGAGTGCCAGTGTTAGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATAGAGACGAGGGCCAGTGTAAGACATG
* *
24279292 TCTGGGACATGCATCGGCCTCGATGATGAT
66 TCTGGGACATGCATCAGCCACGATGATGAT
24279322 AGCCAGTGTAAGA
1 AGCCAGTGTAAGA
24279335 TGTGTCTAGG
Statistics
Matches: 95, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
94 75 0.79
95 20 0.21
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (95 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATAGAGACGAGGGCCAGTGTAAGACATG
TCTGGGACATGCATCAGCCACGATGATGAT
Found at i:24279320 original size:47 final size:46
Alignment explanation
Indices: 24279129--24279491 Score: 200
Period size: 47 Copynumber: 7.7 Consensus size: 46
24279119 TTGGGTTATG
* * * * *
24279129 TGAGAGCCAGTATAAGACCATGTCTGGGACATGGCATCGACATTGAGA
1 TGAGTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGA
* * * * * *
24279177 CGAGGGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATTA
1 TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GA
* * *
24279223 TGA-TAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCGTAGAGA
1 TGAGT-GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGA
*
24279271 TGAGTGCCAGTGTTAGACATGTCTGGGACATGCATCGGCCTCGATGA
1 TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GA
** * * * *
24279318 TGA-TAGCCAGTGTAAGATGTGTCTAGGACATGTATTGG-CT-AAGTA
1 TGAGT-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAG-A
* * * * * * ** *
24279363 T-CGTGCTAGTGTAAGGCATGTTTGGGCCATGCATCAGCACGTATACA
1 TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGC-C-TCGAGA
* * * * * *
24279410 TGAGAGCTAGTATAAGACCATGTCTGGGATATGGCAACGGCCTCGATA
1 TGAGTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGA
*
24279458 -GAGATAGCCAGCGTAAGACCATGTCTGGGACATG
1 TGAG-T-GCCAGTGTAAGA-CATGTCTGGGACATG
24279492 GCAGCGGCAA
Statistics
Matches: 236, Mismatches: 60, Indels: 38
0.71 0.18 0.11
Matches are distributed among these distances:
44 24 0.10
45 5 0.02
46 35 0.15
47 78 0.33
48 51 0.22
49 37 0.16
50 6 0.03
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA
Found at i:24284768 original size:75 final size:75
Alignment explanation
Indices: 24284654--24284803 Score: 230
Period size: 75 Copynumber: 2.0 Consensus size: 75
24284644 AAAGAAAACC
* * *
24284654 AGGATTATTCCCTTATTAATAAAGAAGGTAAACGAAAAGTTAGAAAAATGAATTATATTCTTTCC
1 AGGATTATTCCCATACTAATAAAGAAGGCAAACGAAAAGTTAGAAAAATGAATTATATTCTTTCC
24284719 AAAAGAATAT
66 AAAAGAATAT
* * *
24284729 AGGATTATTCTCATACTAATAGAA-AAGGCAAATGGAAAGTTAGAAAAATGAATTATATTCTTTC
1 AGGATTATTCCCATACTAATA-AAGAAGGCAAACGAAAAGTTAGAAAAATGAATTATATTCTTTC
24284793 CAAAAGAATAT
65 CAAAAGAATAT
24284804 TAATTTCCAT
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
75 66 0.97
76 2 0.03
ACGTcount: A:0.47, C:0.09, G:0.14, T:0.30
Consensus pattern (75 bp):
AGGATTATTCCCATACTAATAAAGAAGGCAAACGAAAAGTTAGAAAAATGAATTATATTCTTTCC
AAAAGAATAT
Found at i:24285028 original size:71 final size:71
Alignment explanation
Indices: 24284951--24285090 Score: 219
Period size: 71 Copynumber: 2.0 Consensus size: 71
24284941 TATTAATTTT
* *
24284951 CATGTCTTTTATATTTTGACTG-AATTAATTAATATAAATGTTTATATTAATAAATTAGGTAAAA
1 CATGTCTTTTACA-TTTGACCGAAATTAATTAATATAAATGTTTATATTAATAAATTAGGTAAAA
*
24285015 TATATTC
65 CATATTC
* *
24285022 CATGTCTTTTACATTTGACCGAAATTAATTAATATAACTGTTTATATTAATAAATTCGGTAAAAC
1 CATGTCTTTTACATTTGACCGAAATTAATTAATATAAATGTTTATATTAATAAATTAGGTAAAAC
24285087 ATAT
66 ATAT
24285091 ACAATTAATA
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
70 7 0.11
71 56 0.89
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.44
Consensus pattern (71 bp):
CATGTCTTTTACATTTGACCGAAATTAATTAATATAAATGTTTATATTAATAAATTAGGTAAAAC
ATATTC
Found at i:24285060 original size:209 final size:211
Alignment explanation
Indices: 24284808--24285228 Score: 674
Period size: 209 Copynumber: 2.0 Consensus size: 211
24284798 GAATATTAAT
* * *
24284808 TTCCATGTCTTTTTATATTTTGATCGAAATTAATTAATATAACT-TTTCATATTAATAAAGTCAT
1 TTCCATGTCTTTTTACATTTTGACCGAAATTAATTAATATAACTGTTT-ATATTAATAAAGTCAG
* * *
24284872 TAAAATATATACAATTAATATCTT-GTATGAATCAAATTCATATATTAATTATATTTTTTTCCGA
65 TAAAACATATACAATTAATAT-TTCGTATGAATCAAATTCATATATTAATTATA-TTCTTTCCAA
24284936 AAGAATATTAATTTTCATGTCTTTTATATTTTGACTG-AATTAATTAATATAAATGTTTATATTA
128 AAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAAATTAATTAATATAAATGTTTATATTA
*
24285000 ATAAATT-AGGTAAAATATA
193 ATAAATTCA-ATAAAATATA
* *
24285019 TTCCATGTC-TTTTACA-TTTGACCGAAATTAATTAATATAACTGTTTATATTAATAAATTCGGT
1 TTCCATGTCTTTTTACATTTTGACCGAAATTAATTAATATAACTGTTTATATTAATAAAGTCAGT
24285082 AAAACATATACAATTAATATTTCGTATGAATCAAATTCATATATTAATTATATTCTTTCCAAAAG
66 AAAACATATACAATTAATATTTCGTATGAATCAAATTCATATATTAATTATATTCTTTCCAAAAG
*
24285147 AATATTAATTTTCATGTCTTTTATATTTTGACTGAAATTAATTAATATAATTGTTTATATTAATA
131 AATATTAATTTTCATGTCTTTTATATTTTGACTGAAATTAATTAATATAAATGTTTATATTAATA
24285212 AATTCAATAAAATATA
196 AATTCAATAAAATATA
24285228 T
1 T
24285229 ACAATTAATA
Statistics
Matches: 196, Mismatches: 10, Indels: 10
0.91 0.05 0.05
Matches are distributed among these distances:
208 47 0.24
209 130 0.66
210 10 0.05
211 9 0.05
ACGTcount: A:0.40, C:0.09, G:0.06, T:0.45
Consensus pattern (211 bp):
TTCCATGTCTTTTTACATTTTGACCGAAATTAATTAATATAACTGTTTATATTAATAAAGTCAGT
AAAACATATACAATTAATATTTCGTATGAATCAAATTCATATATTAATTATATTCTTTCCAAAAG
AATATTAATTTTCATGTCTTTTATATTTTGACTGAAATTAATTAATATAAATGTTTATATTAATA
AATTCAATAAAATATA
Found at i:24285124 original size:138 final size:137
Alignment explanation
Indices: 24285019--24285272 Score: 348
Period size: 138 Copynumber: 1.8 Consensus size: 137
24285009 GTAAAATATA
**
24285019 TTCCATGTCTTTTACA-TTTGACCGAAATTAATTAATATAACTGTTTATATTAATAAATTCGGTA
1 TTCCATGTCTTTTACATTTTGACCGAAATTAATTAATATAACTGTTTATATTAATAAATTCAATA
* * **
24285083 AAACATATACAATTAATATTTCGTATGAATCAAATTCATATATTAATTATATTCTTTCCAAAAGA
66 AAACATATACAATTAATATTTCGTATAAATCAAATTCATATA-TAATTATATTATTAACAAAAGA
*
24285148 ATATTAAT
130 AAATTAAT
* * * *
24285156 TTTCATGTCTTTTATATTTTGACTGAAATTAATTAATATAATTGTTTATATTAATAAATTCAATA
1 TTCCATGTCTTTTACATTTTGACCGAAATTAATTAATATAACTGTTTATATTAATAAATTCAATA
* * * *
24285221 AAATATATACAATTAATATTTTGTATAAATTAAATTCAGATATTAATTATAT
66 AAACATATACAATTAATATTTCGTATAAATCAAATTCATATA-TAATTATAT
24285273 CTATGTTCTC
Statistics
Matches: 105, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
137 14 0.13
138 91 0.87
ACGTcount: A:0.41, C:0.09, G:0.06, T:0.44
Consensus pattern (137 bp):
TTCCATGTCTTTTACATTTTGACCGAAATTAATTAATATAACTGTTTATATTAATAAATTCAATA
AAACATATACAATTAATATTTCGTATAAATCAAATTCATATATAATTATATTATTAACAAAAGAA
AATTAAT
Found at i:24286005 original size:27 final size:27
Alignment explanation
Indices: 24285967--24286023 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
24285957 TAATATTGTG
24285967 ACTATTACACAATAATCCAAGAAACAT
1 ACTATTACACAATAATCCAAGAAACAT
24285994 ACTATTACACAATAATCCAAGAAACAT
1 ACTATTACACAATAATCCAAGAAACAT
24286021 ACT
1 ACT
24286024 CATAGCGGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.51, C:0.23, G:0.04, T:0.23
Consensus pattern (27 bp):
ACTATTACACAATAATCCAAGAAACAT
Found at i:24289516 original size:20 final size:20
Alignment explanation
Indices: 24289491--24289530 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
24289481 CAGCTTGTGT
24289491 GAGCAGCTCATGTAGCTACA
1 GAGCAGCTCATGTAGCTACA
24289511 GAGCAGCTCATGTAGCTACA
1 GAGCAGCTCATGTAGCTACA
24289531 CCTTGACTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.25, G:0.25, T:0.20
Consensus pattern (20 bp):
GAGCAGCTCATGTAGCTACA
Found at i:24297576 original size:46 final size:46
Alignment explanation
Indices: 24297509--24297686 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
24297499 TGTAACCCGC
* * *
24297509 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
* * *
24297555 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-TTCGCAT
* *** * * **
24297601 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
*
24297648 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG
24297687 CCCAAATATC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
46 71 0.68
47 34 0.32
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
Found at i:24297645 original size:93 final size:93
Alignment explanation
Indices: 24297516--24297688 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
24297506 CGCCCATAAG
* * ***
24297516 CGAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
24297581 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
*
24297609 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
24297674 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
24297689 CAAATATCCC
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:24305655 original size:44 final size:44
Alignment explanation
Indices: 24305592--24305680 Score: 144
Period size: 44 Copynumber: 2.0 Consensus size: 44
24305582 ACCTGTTGAG
*
24305592 TCTACCGAATTTATAATTAAAGTGTCAAAT-TCATTAGGAAAGCA
1 TCTACCAAATTTATAATTAAAGTGTCAAATCT-ATTAGGAAAGCA
*
24305636 TCTACCAAATTTATGATTAAAGTGTCAAATCTATTAGGAAAGCA
1 TCTACCAAATTTATAATTAAAGTGTCAAATCTATTAGGAAAGCA
24305680 T
1 T
24305681 GTGATAGTTG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 41 0.98
45 1 0.02
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (44 bp):
TCTACCAAATTTATAATTAAAGTGTCAAATCTATTAGGAAAGCA
Found at i:24312159 original size:30 final size:30
Alignment explanation
Indices: 24312125--24312202 Score: 86
Period size: 30 Copynumber: 2.6 Consensus size: 30
24312115 TGAGCTAAAA
*
24312125 TGAGCTAAGCTTTAGC-CCTAGACCTAAAGT
1 TGAGCTAAGGTTTAGCTCCTA-ACCTAAAGT
* * * * *
24312155 TGAGCTGAGGTTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCCTAACCTAAAGT
24312185 TGAGCTAAGGTTTAGCTC
1 TGAGCTAAGGTTTAGCTC
24312203 GTGAGTTGAA
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
30 34 0.89
31 4 0.11
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCCTAACCTAAAGT
Found at i:24314359 original size:12 final size:12
Alignment explanation
Indices: 24314342--24314384 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
24314332 CTCTCAAACA
24314342 CTTTTTCATTCT
1 CTTTTTCATTCT
*
24314354 CTTTTTCAATCT
1 CTTTTTCATTCT
* * *
24314366 CATTTTCTTTTT
1 CTTTTTCATTCT
24314378 CTTTTTC
1 CTTTTTC
24314385 TTTTTTTTTT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.09, C:0.23, G:0.00, T:0.67
Consensus pattern (12 bp):
CTTTTTCATTCT
Found at i:24315453 original size:11 final size:11
Alignment explanation
Indices: 24315434--24315467 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
24315424 AAGTTTTCAC
24315434 TTCAATTTTTT
1 TTCAATTTTTT
*
24315445 TTCAGTTTTTT
1 TTCAATTTTTT
*
24315456 TTGAATTTTTT
1 TTCAATTTTTT
24315467 T
1 T
24315468 CGAAATTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.15, C:0.06, G:0.06, T:0.74
Consensus pattern (11 bp):
TTCAATTTTTT
Found at i:24320485 original size:18 final size:18
Alignment explanation
Indices: 24320462--24320497 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
24320452 TTTAATGTGT
*
24320462 TATAAATTACATAATATA
1 TATAAATAACATAATATA
24320480 TATAAATAACATAATATA
1 TATAAATAACATAATATA
24320498 AAGTATTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (18 bp):
TATAAATAACATAATATA
Found at i:24321507 original size:16 final size:15
Alignment explanation
Indices: 24321486--24321541 Score: 62
Period size: 15 Copynumber: 3.7 Consensus size: 15
24321476 CAAGAGAAAG
24321486 TAATTTAAAATTAAAA
1 TAATTTAAAA-TAAAA
24321502 TAATTT-AAATAAAA
1 TAATTTAAAATAAAA
* *
24321516 CAA-CTAACAATAAAA
1 TAATTTAA-AATAAAA
24321531 TAATTTAAAAT
1 TAATTTAAAAT
24321542 TAAACCCGAG
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
13 1 0.03
14 8 0.24
15 15 0.45
16 9 0.27
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.32
Consensus pattern (15 bp):
TAATTTAAAATAAAA
Found at i:24325555 original size:16 final size:16
Alignment explanation
Indices: 24325530--24325569 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
24325520 AGTTTGAACG
*
24325530 TTAAATTAGGGTATGT
1 TTAAAATAGGGTATGT
24325546 TTAAAATAGGGTATGT
1 TTAAAATAGGGTATGT
24325562 TTAAAATA
1 TTAAAATA
24325570 AGTAAATCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (16 bp):
TTAAAATAGGGTATGT
Found at i:24332768 original size:14 final size:14
Alignment explanation
Indices: 24332751--24332790 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
24332741 CGAATGGAAT
*
24332751 GGTAGGAACGAAAG
1 GGTAGGAACAAAAG
24332765 GGTAGGAACAAAAG
1 GGTAGGAACAAAAG
* *
24332779 GATATGAACAAA
1 GGTAGGAACAAA
24332791 TTGGTCGGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.50, C:0.07, G:0.33, T:0.10
Consensus pattern (14 bp):
GGTAGGAACAAAAG
Found at i:24338581 original size:93 final size:93
Alignment explanation
Indices: 24338453--24338623 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
24338443 GCCCATAAGT
* * *
24338453 GAACTCGGACTCAATTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
24338518 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
24338546 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
24338611 CGAGTTCGGATGC
66 CGAGTTCGGATGC
24338624 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:24338620 original size:46 final size:46
Alignment explanation
Indices: 24338445--24338620 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
24338435 TGTAACCCGC
* * * *
24338445 CCATAAGTGAACTCGGACTCAATTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
24338491 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
24338541 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
24338584 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
24338621 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:24342093 original size:54 final size:54
Alignment explanation
Indices: 24342018--24342225 Score: 197
Period size: 53 Copynumber: 3.9 Consensus size: 54
24342008 TTGGTAAGAT
*
24342018 AAGGATATCATGTAAGACCATGCCAAGGCATGACATTGATAAGTTCTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGACATGACATTGATAAGTTCTATAAGGC
* * * *
24342072 AAGGAAATCTTGTAAGACCATGTCAAGACATGGA-ATTGATGAGTTACTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGACAT-GACATTGATAAGTT-CTATAAGGC
** * * * * * *
24342127 AAAGG-TCGCATGTAAGACTATGCAAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATATCATGTAAGACCATGCCAAGACATGACATTGATAAGTTCTATAAGGC
* * * * * *
24342180 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATATCATGTAAGACCATGCCAAGACATGACATTGATAAGTTC
24342226 AAAAAGGAAA
Statistics
Matches: 125, Mismatches: 24, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
52 4 0.03
53 39 0.31
54 39 0.31
55 39 0.31
56 4 0.03
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATATCATGTAAGACCATGCCAAGACATGACATTGATAAGTTCTATAAGGC
Found at i:24342143 original size:55 final size:53
Alignment explanation
Indices: 24342026--24342212 Score: 186
Period size: 55 Copynumber: 3.5 Consensus size: 53
24342016 ATAAGGATAT
* * *
24342026 CATGTAAGACCATGCCAAGGCAT-GACATTGATAAGTTCTATAAGGCAAGGAAAT-
1 CATGTAAGACCATGTCAAGACATGGA-ATTGATGAGTTCTATAAGGCAAGG--ATC
*
24342080 CTTGTAAGACCATGTCAAGACATGGAATTGATGAGTTACTATAAGGCAAAGG-TC
1 CATGTAAGACCATGTCAAGACATGGAATTGATGAGTT-CTATAAGGC-AAGGATC
* * * *
24342134 GCATGTAAGACTATG-CAAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATAC
1 -CATGTAAGACCATGTC-AAGACATGGAATTGATGAGTTCTATAAGGCAAGGAT-C
*
24342188 CACGTAAGACCATGTCAAGACATGG
1 CATGTAAGACCATGTCAAGACATGG
24342213 CAATGGTAAG
Statistics
Matches: 112, Mismatches: 12, Indels: 19
0.78 0.08 0.13
Matches are distributed among these distances:
52 4 0.04
53 29 0.26
54 34 0.30
55 41 0.37
56 4 0.04
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (53 bp):
CATGTAAGACCATGTCAAGACATGGAATTGATGAGTTCTATAAGGCAAGGATC
Found at i:24346114 original size:48 final size:48
Alignment explanation
Indices: 24346048--24346768 Score: 1254
Period size: 48 Copynumber: 15.1 Consensus size: 48
24346038 GTGGAAATTG
*
24346048 ATGTACGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
24346096 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
24346144 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
24346192 ATGTATGAGATAAGTATATGTGGTAAACCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
24346240 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
24346288 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
24346336 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
24346384 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
24346432 ATGTATGAGATATGTATATGTGGTAAAGCGGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
24346480 ATGTATGAGATAAGTATATGTGGTAAAGCGGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
24346528 ATGTATGAGATAAGTATATGTGGTAAAGCGGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
24346576 ATGTATGAGATATGTATATGTGGTAAAGCTGAATGGCGAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
24346624 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGTTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
24346672 A--TAT---ATATGAGATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATG-TATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
24346716 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
24346764 ATGTA
1 ATGTA
24346769 GGCGATGTGT
Statistics
Matches: 648, Mismatches: 19, Indels: 12
0.95 0.03 0.02
Matches are distributed among these distances:
43 5 0.01
44 33 0.05
46 6 0.01
48 599 0.92
49 5 0.01
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.30
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:24347023 original size:37 final size:37
Alignment explanation
Indices: 24346915--24347023 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
24346905 GGAAATATAT
*
24346915 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
24346952 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
24346989 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
24347024 CATCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:24350338 original size:44 final size:44
Alignment explanation
Indices: 24350290--24350378 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
24350280 GCTAATAAAG
24350290 TATAAACAGTTGAAGATATTAACAATTGAAGTATCCATTATGAT
1 TATAAACAGTTGAAGATATTAACAATTGAAGTATCCATTATGAT
* *
24350334 TATAAATAGTTGAAGATATTGACAATTGAAGTATCCATTATGAT
1 TATAAACAGTTGAAGATATTAACAATTGAAGTATCCATTATGAT
24350378 T
1 T
24350379 CAGCTTGGTT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.42, C:0.08, G:0.15, T:0.36
Consensus pattern (44 bp):
TATAAACAGTTGAAGATATTAACAATTGAAGTATCCATTATGAT
Found at i:24350846 original size:16 final size:16
Alignment explanation
Indices: 24350825--24350858 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
24350815 ATTCAGAGTG
24350825 TAAATTTTAGTTGTTA
1 TAAATTTTAGTTGTTA
24350841 TAAATTTTAGTTGTTA
1 TAAATTTTAGTTGTTA
24350857 TA
1 TA
24350859 GTTGGAAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (16 bp):
TAAATTTTAGTTGTTA
Found at i:24353119 original size:55 final size:54
Alignment explanation
Indices: 24352985--24353187 Score: 223
Period size: 54 Copynumber: 3.8 Consensus size: 54
24352975 GCATTGGCAC
* * ** *
24352985 TAAGACAAGAATACCATGTAAGACCATGCCAAGGTATGGCATTGATAAGTTCTA
1 TAAGGCAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTA
* * ** *
24353039 TAAGGCAAGGAAATCATGTAAGACCATGTTAAGACAGGGCATTGATGAGTTACTA
1 TAAGGCAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTA
* * *
24353094 TAAGGCAAAGG-TCCCATGTAAGACCATGCCAA-AGCATGGCATTGGTGAGGTC-A
1 TAAGGC-AAGGATACCATGTAAGACCATGCCAAGA-CATGGCATTGATGAGTTCTA
* *
24353147 TAAGGCAAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 TAAGGCAAGGATACCATGTAAGACCATGCCAAGACATGGCA
24353188 ATGGTAAGTT
Statistics
Matches: 123, Mismatches: 21, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
52 4 0.03
53 32 0.26
54 44 0.36
55 39 0.32
56 4 0.03
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
TAAGGCAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTA
Found at i:24357184 original size:53 final size:54
Alignment explanation
Indices: 24357055--24357196 Score: 169
Period size: 53 Copynumber: 2.6 Consensus size: 54
24357045 TACAAGGCAT
* * * * * *
24357055 GTAAGACCATGTCAAGACATGGCATTGATAAACTACGATAAGGCAAAGATCCCAT
1 GTAAGACCATGTCAAGACATGGCAATGGT-AAGTTCGATAAGGCAAAGATACCAC
* * * *
24357110 GTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGCAAGGATACCAC
1 GTAAGACCATGTCAAGACATGGCAATGGTAAGTTCGATAAGGCAAAGATACCAC
*
24357163 GTAAAACCATGTCAAGACATGGCAATGGTAAGTT
1 GTAAGACCATGTCAAGACATGGCAATGGTAAGTT
24357197 TGGAAAGGAA
Statistics
Matches: 73, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
53 45 0.62
54 3 0.04
55 25 0.34
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (54 bp):
GTAAGACCATGTCAAGACATGGCAATGGTAAGTTCGATAAGGCAAAGATACCAC
Found at i:24361467 original size:15 final size:14
Alignment explanation
Indices: 24361441--24361470 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
24361431 ATCATTTAAC
24361441 ATGTAATTAACATA
1 ATGTAATTAACATA
24361455 ATGTAAGTTAACATA
1 ATGTAA-TTAACATA
24361470 A
1 A
24361471 ATGCTATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.50, C:0.07, G:0.10, T:0.33
Consensus pattern (14 bp):
ATGTAATTAACATA
Found at i:24364721 original size:23 final size:22
Alignment explanation
Indices: 24364689--24364732 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
24364679 TATAATCCAT
* *
24364689 ACCAAATCATGCCAAATCATAA
1 ACCAAATCATACCAAAACATAA
24364711 ACCAAAGTCATACCAAAACATA
1 ACCAAA-TCATACCAAAACATA
24364733 TGTTTCATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.52, C:0.27, G:0.05, T:0.16
Consensus pattern (22 bp):
ACCAAATCATACCAAAACATAA
Found at i:24368233 original size:44 final size:43
Alignment explanation
Indices: 24368170--24368328 Score: 155
Period size: 43 Copynumber: 3.7 Consensus size: 43
24368160 TATGTGATAT
*
24368170 CGTGTAAGACCATGTCTGGGATGTTGGCATCGACT-TTTGTTTTA
1 CGTGTAAGACCATGTCTGGGACGTTGGCATCGA-TATTTG-TTTA
* *
24368214 CGTGTAAGACCATGTCTGGGACATTGGCATC-ATATTTAATTT-
1 CGTGTAAGACCATGTCTGGGACGTTGGCATCGATATTT-GTTTA
* * * * *
24368256 CGTGTAAGACCCTGTTTGAGACAG-TGGCATCGATGTTTGATTA
1 CGTGTAAGACCATGTCTGGGAC-GTTGGCATCGATATTTGTTTA
* * *
24368299 CATGTAAGACCACGTCTAGGACGTTGGCAT
1 CGTGTAAGACCATGTCTGGGACGTTGGCAT
24368329 TGTATATGCT
Statistics
Matches: 93, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
42 30 0.32
43 34 0.37
44 29 0.31
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGTTTA
Found at i:24368308 original size:43 final size:42
Alignment explanation
Indices: 24368170--24368315 Score: 134
Period size: 42 Copynumber: 3.4 Consensus size: 42
24368160 TATGTGATAT
* * *
24368170 CGTGTAAGACCATGTCTGGGA-TGTTGGCATCGACTTTTGTTTTA
1 CGTGTAAGACCATGTCTGAGACAG-TGGCATCGA-TTTTG-ATTA
* * * *
24368214 CGTGTAAGACCATGTCTGGGACATTGGCATC-ATATTTAATTT
1 CGTGTAAGACCATGTCTGAGACAGTGGCATCGAT-TTTGATTA
* *
24368256 CGTGTAAGACCCTGTTTGAGACAGTGGCATCGATGTTTGATTA
1 CGTGTAAGACCATGTCTGAGACAGTGGCATCGAT-TTTGATTA
* *
24368299 CATGTAAGACCACGTCT
1 CGTGTAAGACCATGTCT
24368316 AGGACGTTGG
Statistics
Matches: 83, Mismatches: 16, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
42 30 0.36
43 25 0.30
44 28 0.34
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGAGACAGTGGCATCGATTTTGATTA
Found at i:24378261 original size:27 final size:27
Alignment explanation
Indices: 24378231--24378408 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
24378221 ATATTGAGCC
* * *
24378231 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
24378258 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
24378285 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
24378313 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
24378340 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
24378367 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
24378394 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24378409 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:24378324 original size:55 final size:55
Alignment explanation
Indices: 24378231--24378408 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
24378221 ATATTGAGCC
* * *
24378231 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
24378285 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
24378340 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
24378394 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24378409 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:24378370 original size:82 final size:81
Alignment explanation
Indices: 24378252--24378407 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
24378242 TGCTATACAA
* * *
24378252 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
24378317 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
24378334 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
24378398 CACTTAGTGC
65 CACTTAGTGC
24378408 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:24386128 original size:27 final size:27
Alignment explanation
Indices: 24386098--24386275 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
24386088 ATATTGAGCC
* * *
24386098 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
24386125 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
24386152 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
24386180 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
24386207 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
24386234 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
24386261 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24386276 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:24386191 original size:55 final size:55
Alignment explanation
Indices: 24386098--24386275 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
24386088 ATATTGAGCC
* * *
24386098 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
24386152 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
24386207 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
24386261 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24386276 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:24386237 original size:82 final size:81
Alignment explanation
Indices: 24386119--24386274 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
24386109 TGCTATACAA
* * *
24386119 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
24386184 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
24386201 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
24386265 CACTTAGTGC
65 CACTTAGTGC
24386275 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:24422410 original size:27 final size:27
Alignment explanation
Indices: 24422375--24422524 Score: 135
Period size: 27 Copynumber: 5.6 Consensus size: 27
24422365 TTGAGTCCGC
* *
24422375 CACTCAGTGCTATATAATCAACTCGCA
1 CACTTAGTGCTACATAATCAACTCGCA
* *
24422402 CACTTAGTGCTACGTAATCAAATCGCA
1 CACTTAGTGCTACATAATCAACTCGCA
*
24422429 CACTTAGTGCTACATAGTCAAACTCGCA
1 CACTTAGTGCTACATAATC-AACTCGCA
** ** *
24422457 CACTTA-TGGCCGCATGGTCAATTCGCA
1 CACTTAGT-GCTACATAATCAACTCGCA
* **
24422484 CACTTAGTGC-ATCATATTCATTTCGCA
1 CACTTAGTGCTA-CATAATCAACTCGCA
24422511 CACTTAGTGC-ACAT
1 CACTTAGTGCTACAT
24422525 TAGTCATGCA
Statistics
Matches: 104, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
26 3 0.03
27 79 0.76
28 22 0.21
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CACTTAGTGCTACATAATCAACTCGCA
Found at i:24422531 original size:27 final size:26
Alignment explanation
Indices: 24422392--24422566 Score: 141
Period size: 27 Copynumber: 6.8 Consensus size: 26
24422382 TGCTATATAA
* * *
24422392 TCAACTCGCACACTTAGTGCTACGTAA
1 TCAATTCGCACACTTAGTGC-ACATAG
*
24422419 TCAAATCGCACACTTAGTGCTACATAG
1 TCAATTCGCACACTTAGTGC-ACATAG
* * *
24422446 TCAAACTCGCACACTTA-TGGCCGCATGG
1 TC-AATTCGCACACTTAGT-G-CACATAG
*
24422474 TCAATTCGCACACTTAGTGCATCATAT
1 TCAATTCGCACACTTAGTGCA-CATAG
*
24422501 TCATTTCGCACACTTAGTGCACATTAG
1 TCAATTCGCACACTTAGTGCACA-TAG
24422528 TC-A-T-GCACAC-TA-TG--CATAG
1 TCAATTCGCACACTTAGTGCACATAG
*
24422547 TCAAATCGCACACTTAGTGC
1 TCAATTCGCACACTTAGTGC
24422567 TGTACAATTT
Statistics
Matches: 123, Mismatches: 13, Indels: 26
0.76 0.08 0.16
Matches are distributed among these distances:
19 5 0.04
20 3 0.02
21 1 0.01
22 8 0.07
23 4 0.03
24 8 0.07
25 1 0.01
26 3 0.02
27 68 0.55
28 21 0.17
29 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (26 bp):
TCAATTCGCACACTTAGTGCACATAG
Found at i:24430590 original size:27 final size:27
Alignment explanation
Indices: 24430553--24430753 Score: 251
Period size: 27 Copynumber: 7.4 Consensus size: 27
24430543 TAAATTGTAC
24430553 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
24430580 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
24430607 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24430633 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
24430661 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
24430689 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24430716 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
24430743 AGCACTGAGTG
1 AGCACTAAGTG
24430754 AGCGGACTCA
Statistics
Matches: 152, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
27 129 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:24437445 original size:46 final size:46
Alignment explanation
Indices: 24437395--24437569 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
24437385 TGATTGAGCA
24437395 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
24437441 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
24437486 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
24437534 -CCTGAGCT-GTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
24437570 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 9, Indels: 21
0.79 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 32 0.29
46 33 0.30
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:24447931 original size:68 final size:67
Alignment explanation
Indices: 24447859--24448008 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
24447849 CATCATGTGT
* * * *
24447859 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
24447921 ATGTAG
62 ATGTAG
** * *
24447927 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
24447992 AG
66 AG
24447994 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
24448009 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:24447964 original size:64 final size:64
Alignment explanation
Indices: 24447883--24448066 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
24447873 AGACATTATG
* *
24447883 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
24447947 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
24448012 AA
63 AA
* * * *
24448014 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
24448067 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:24451951 original size:28 final size:29
Alignment explanation
Indices: 24451909--24452023 Score: 121
Period size: 28 Copynumber: 4.1 Consensus size: 29
24451899 AGCATGACTG
*
24451909 TAAATGTGATTTGGGCCTAGT-GGCCATA
1 TAAATGTGATTTGGGCCTAATGGGCCATA
* *
24451937 TCAATGTGATTTGGGCCTAATGGGCCACA
1 TAAATGTGATTTGGGCCTAATGGGCCATA
** *
24451966 TAAATGT-AAATGAGCCTAATGGGCCATA
1 TAAATGTGATTTGGGCCTAATGGGCCATA
* *
24451994 TGAAA-GAGA-TTGGGCCTAGTGGGCCATA
1 T-AAATGTGATTTGGGCCTAATGGGCCATA
24452022 TA
1 TA
24452024 TAGGTATGTT
Statistics
Matches: 72, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
27 1 0.01
28 55 0.76
29 16 0.22
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27
Consensus pattern (29 bp):
TAAATGTGATTTGGGCCTAATGGGCCATA
Found at i:24459371 original size:28 final size:28
Alignment explanation
Indices: 24459339--24459394 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
24459329 GGTGAAAGGT
24459339 GAGGTTTCGATTTCGGTAGAGATATGTA
1 GAGGTTTCGATTTCGGTAGAGATATGTA
* *
24459367 GAGGTTTCGATTTTGGTGGAGATATGTA
1 GAGGTTTCGATTTCGGTAGAGATATGTA
24459395 TTAAGCATGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.23, C:0.05, G:0.34, T:0.38
Consensus pattern (28 bp):
GAGGTTTCGATTTCGGTAGAGATATGTA
Found at i:24459532 original size:16 final size:16
Alignment explanation
Indices: 24459508--24459558 Score: 75
Period size: 16 Copynumber: 3.2 Consensus size: 16
24459498 GTAGATCGAC
* *
24459508 AAATCCCAAAAAGTCG
1 AAATGCCAAAAAGCCG
*
24459524 AAATGCCAAAAAACCG
1 AAATGCCAAAAAGCCG
24459540 AAATGCCAAAAAGCCG
1 AAATGCCAAAAAGCCG
24459556 AAA
1 AAA
24459559 GTTTGGCTGC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.55, C:0.24, G:0.14, T:0.08
Consensus pattern (16 bp):
AAATGCCAAAAAGCCG
Found at i:24459813 original size:28 final size:28
Alignment explanation
Indices: 24459773--24459884 Score: 120
Period size: 28 Copynumber: 4.0 Consensus size: 28
24459763 CATGACTATA
24459773 AATGTGATTTGGGCCTAGT-GGCCATATG
1 AATGTGA-TTGGGCCTAGTGGGCCATATG
* * *
24459801 AATGTGATTTGGGCCTAATGGGCCACATA
1 AATGTGA-TTGGGCCTAGTGGGCCATATG
*
24459830 AATGTGAATGGGCCT-GATGGGCCATATG
1 AATGTGATTGGGCCTAG-TGGGCCATATG
* * *
24459858 AAAGAGATTGGGCCTAGTAGGCCATAT
1 AATGTGATTGGGCCTAGTGGGCCATAT
24459885 ATAAGTATGT
Statistics
Matches: 70, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
28 55 0.79
29 15 0.21
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (28 bp):
AATGTGATTGGGCCTAGTGGGCCATATG
Found at i:24459881 original size:56 final size:57
Alignment explanation
Indices: 24459770--24459881 Score: 140
Period size: 57 Copynumber: 2.0 Consensus size: 57
24459760 GAGCATGACT
* * * *
24459770 ATAAATGTGATTTGGGCCTAGTGGCCATATGAATGTGATTTGGGCCTAATGGGCCAC
1 ATAAATGTGATATGGGCCTAGTGGCCATATGAAAGAGATTTGGGCCTAATAGGCCAC
*
24459827 ATAAATGTGA-ATGGGCCT-GATGGGCCATATGAAAGAGA-TTGGGCCTAGTAGGCCA
1 ATAAATGTGATATGGGCCTAG-T-GGCCATATGAAAGAGATTTGGGCCTAATAGGCCA
24459882 TATATAAGTA
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
55 1 0.02
56 23 0.48
57 24 0.50
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (57 bp):
ATAAATGTGATATGGGCCTAGTGGCCATATGAAAGAGATTTGGGCCTAATAGGCCAC
Found at i:24464314 original size:40 final size:40
Alignment explanation
Indices: 24464259--24464352 Score: 120
Period size: 40 Copynumber: 2.4 Consensus size: 40
24464249 CAACTATTTG
24464259 TGGCACTTAGTGTGTGATTCGAC-ATAACTTC-GTCTATATA
1 TGGCACTTAGTGTGTGATTCG-CGATAACTTCAG-CTATATA
* * *
24464299 TGGCACTTAGTGTGTGATTTGCGATAGCTTCAGCTATGTA
1 TGGCACTTAGTGTGTGATTCGCGATAACTTCAGCTATATA
*
24464339 TGACACTTAGTGTG
1 TGGCACTTAGTGTG
24464353 CGAGATATCG
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
39 1 0.02
40 46 0.96
41 1 0.02
ACGTcount: A:0.22, C:0.16, G:0.24, T:0.37
Consensus pattern (40 bp):
TGGCACTTAGTGTGTGATTCGCGATAACTTCAGCTATATA
Found at i:24465897 original size:20 final size:20
Alignment explanation
Indices: 24465872--24465912 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
24465862 CTAGGACTAA
24465872 CGTAGCATTTACGAGTCTAG
1 CGTAGCATTTACGAGTCTAG
24465892 CGTAGCATTTACGAGTCTAG
1 CGTAGCATTTACGAGTCTAG
24465912 C
1 C
24465913 TATACATGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.29
Consensus pattern (20 bp):
CGTAGCATTTACGAGTCTAG
Found at i:24471544 original size:135 final size:135
Alignment explanation
Indices: 24471302--24471572 Score: 488
Period size: 135 Copynumber: 2.0 Consensus size: 135
24471292 TTTTGGTAAG
* *
24471302 TGATTTTTAGTGAAAATGCAAAATAGGGATTAAATTGTGAAATGTAAAAACTTTGTGGTTCAATT
1 TGATTTTTAGTGAAAATGCAAAATAGGGATTAAATTGTGAAATGTAAAAACTTTGTGGTTAAAAT
* *
24471367 ATGAAATAAATTAAAAATATGGGCTGCTAGGGGCCTTATGGTAATTCGGCTAAGCATGGGTGTTG
66 ATGAAATAAATTAAAAATATGGGCTGCTAAGGGCCTTATGGTAATTCGGCTAACCATGGGTGTTG
24471432 TGAAA
131 TGAAA
*
24471437 TGATTTTTAGTGAAAATGCAAAATAGGGATTAAATTGTGAAATGTGAAAACTTTGTGGTTAAAAT
1 TGATTTTTAGTGAAAATGCAAAATAGGGATTAAATTGTGAAATGTAAAAACTTTGTGGTTAAAAT
*
24471502 ATGAAATAAATTGAAAATATGGGCTGCTAAGGGCCTTATGGTAATTCGGCTAACCATGGGTGTTG
66 ATGAAATAAATTAAAAATATGGGCTGCTAAGGGCCTTATGGTAATTCGGCTAACCATGGGTGTTG
24471567 TGAAA
131 TGAAA
24471572 T
1 T
24471573 TTGCATGAAT
Statistics
Matches: 130, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
135 130 1.00
ACGTcount: A:0.36, C:0.07, G:0.24, T:0.32
Consensus pattern (135 bp):
TGATTTTTAGTGAAAATGCAAAATAGGGATTAAATTGTGAAATGTAAAAACTTTGTGGTTAAAAT
ATGAAATAAATTAAAAATATGGGCTGCTAAGGGCCTTATGGTAATTCGGCTAACCATGGGTGTTG
TGAAA
Found at i:24472021 original size:40 final size:40
Alignment explanation
Indices: 24471903--24472023 Score: 134
Period size: 40 Copynumber: 3.0 Consensus size: 40
24471893 CGACGACAAA
* * * *
24471903 TCGGCTATTTGTGGCACTTAGTGTACGATTCAACATAGCT
1 TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCT
** * * *
24471943 TCTACTATACATGGCACCTAGTGTGCGATTCGATATAGCT
1 TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCT
* * *
24471983 TCGGCTATATATGGCACTTAGTGTGTGATTTGAGATAGCT
1 TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCT
24472023 T
1 T
24472024 TGGCATTGTA
Statistics
Matches: 65, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36
Consensus pattern (40 bp):
TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCT
Found at i:24472088 original size:28 final size:28
Alignment explanation
Indices: 24472035--24472090 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
24472025 GGCATTGTAC
*
24472035 GACACTTAGTCTGCGAGATATCGAGTAT
1 GACACTTAGTCTGCGAGACATCGAGTAT
* * *
24472063 GACACTTAGTGTGCTAGACATTGAGTAT
1 GACACTTAGTCTGCGAGACATCGAGTAT
24472091 TCAACAGTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (28 bp):
GACACTTAGTCTGCGAGACATCGAGTAT
Found at i:24472631 original size:21 final size:21
Alignment explanation
Indices: 24472605--24472644 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
24472595 TTTATGGTTA
24472605 ATATTATAAGATTTGTGGATT
1 ATATTATAAGATTTGTGGATT
24472626 ATATTATAAGATTTGTGGA
1 ATATTATAAGATTTGTGGA
24472645 ATTGGTGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.20, T:0.45
Consensus pattern (21 bp):
ATATTATAAGATTTGTGGATT
Found at i:24475462 original size:28 final size:28
Alignment explanation
Indices: 24475428--24475502 Score: 89
Period size: 28 Copynumber: 2.7 Consensus size: 28
24475418 GGGCCCCTTT
*
24475428 AGGCCCAATCTCATTCATATGGTCCATC
1 AGGCCCAATCTCATTCATATGGCCCATC
* * *
24475456 GGGCCCAAT-TACTTTCATATGGCCCGTC
1 AGGCCCAATCT-CATTCATATGGCCCATC
*
24475484 AGGCCCAATCACATTCATA
1 AGGCCCAATCTCATTCATA
24475503 GTCATGAAAT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
27 1 0.03
28 37 0.97
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (28 bp):
AGGCCCAATCTCATTCATATGGCCCATC
Found at i:24483326 original size:50 final size:49
Alignment explanation
Indices: 24483251--24483476 Score: 274
Period size: 50 Copynumber: 4.5 Consensus size: 49
24483241 TGAGTACACG
* ** *
24483251 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACCGTTAAGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTT-GGTCACA
* * * *
24483301 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCA-ATGGCTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATGG-TT-GGTCACA
* * *
24483352 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGT-TGGTCACA
* * *
24483402 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTGGTCACA
24483451 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
24483477 TGCATATCAG
Statistics
Matches: 153, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 31 0.20
50 80 0.52
51 42 0.27
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTGGTCACA
Found at i:24483422 original size:101 final size:99
Alignment explanation
Indices: 24483247--24483476 Score: 300
Period size: 101 Copynumber: 2.3 Consensus size: 99
24483237 ATTGTGAGTA
* *
24483247 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACCGTTAAGTCACATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACCGTGAAGTCACATGTGTAGTACT
*
24483312 AAGTGCAGGCTACTATGCGTACTC-AATGGCTTCGAT
66 AAGTGCAGGCTACTACGCGTAC-CGAATGG-TT-GAT
* ** * *
24483348 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACGTGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACCGTGAAGTCACATGTGTAGTACT
* * * *
24483413 AAGTGCAGGCTACTACGTGTACCGGATTGTTGGT
66 AAGTGCAGGCTACTACGCGTACCGAATGGTTGAT
* *
24483447 CGCATGTGTAGTACTAAGTGCAGGCTACTA
1 CACGTGTGTAGTACTAAGTGCAGGCTACTA
24483477 TGCATATCAG
Statistics
Matches: 114, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
99 30 0.26
100 3 0.03
101 81 0.71
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (99 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACCGTGAAGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCGAATGGTTGAT
Found at i:24488876 original size:23 final size:23
Alignment explanation
Indices: 24488846--24488892 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
24488836 AAACTGAAGA
*
24488846 GAAAGTAAAAGTGATTCGTGATT
1 GAAAGTAAAAGTGATTCGTAATT
24488869 GAAAGTAAAAGTGATTCGTAATT
1 GAAAGTAAAAGTGATTCGTAATT
24488892 G
1 G
24488893 TCTGAAAGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.40, C:0.04, G:0.26, T:0.30
Consensus pattern (23 bp):
GAAAGTAAAAGTGATTCGTAATT
Found at i:24490740 original size:51 final size:50
Alignment explanation
Indices: 24490616--24490848 Score: 260
Period size: 51 Copynumber: 4.6 Consensus size: 50
24490606 TGAGTACAAG
* * ** *
24490616 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-AT-ACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAATGACT-TCGA-TCACA
24490666 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACTTCGATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTAC-CAATGACTTCGATCACA
* *
24490717 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGGCTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTAC-CAATGACTTCGATCACA
* * * * *
24490768 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTG--TT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACC--AATGACTTCGATCACA
*
24490817 TGTGTAGTACTAAGTGCAAGCTACTATGCGTA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTA
24490849 TCAGATAGCT
Statistics
Matches: 162, Mismatches: 16, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
49 33 0.20
50 34 0.21
51 85 0.52
52 7 0.04
53 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAATGACTTCGATCACA
Found at i:24490841 original size:100 final size:101
Alignment explanation
Indices: 24490666--24490861 Score: 265
Period size: 100 Copynumber: 1.9 Consensus size: 101
24490656 TTAAGTCGCA
*
24490666 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACTTCGATCACATGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCAATGA-TTCGATCACATGTGTAGTACTAAG
* *
24490731 TGCAGGCTACTATGCGTACTCA-ATGGCTTCGATCACG
65 TGCAAGCTACTATGCGTA-TCAGATAGCTTCGATCACG
* * * *
24490768 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CGGATTG-TT-GGTCGCATGTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTC--AATGATTCGATCACATGTGTAGTACTAA
24490830 GTGCAAGCTACTATGCGTATCAGATAGCTTCG
64 GTGCAAGCTACTATGCGTATCAGATAGCTTCG
24490862 GCTATAAGTG
Statistics
Matches: 84, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
99 3 0.04
100 44 0.52
101 3 0.04
102 31 0.37
103 3 0.04
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (101 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCAATGATTCGATCACATGTGTAGTACTAAGT
GCAAGCTACTATGCGTATCAGATAGCTTCGATCACG
Found at i:24495841 original size:46 final size:46
Alignment explanation
Indices: 24495775--24495907 Score: 214
Period size: 46 Copynumber: 2.9 Consensus size: 46
24495765 AAAGTGTAGT
*
24495775 GTTCATT-TATACCGAGGTTCCTATCATCCTTGATAGTGGGTCGAG
1 GTTCATTATATACCAAGGTTCCTATCATCCTTGATAGTGGGTCGAG
* *
24495820 GTTCATTATATAACAAGGTTCCTATCATCCTTGATAGTAGGTCGAG
1 GTTCATTATATACCAAGGTTCCTATCATCCTTGATAGTGGGTCGAG
* *
24495866 GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGT
1 GTTCATTATATACCAAGGTTCCTATCATCCTTGATAGTGGGT
24495908 AGATGTTTTT
Statistics
Matches: 80, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
45 7 0.09
46 73 0.91
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.36
Consensus pattern (46 bp):
GTTCATTATATACCAAGGTTCCTATCATCCTTGATAGTGGGTCGAG
Found at i:24501162 original size:39 final size:39
Alignment explanation
Indices: 24501108--24501184 Score: 154
Period size: 39 Copynumber: 2.0 Consensus size: 39
24501098 ATGCGGAACA
24501108 CATATTAATGATGTTCAAACTATGACATAATTAAAGACT
1 CATATTAATGATGTTCAAACTATGACATAATTAAAGACT
24501147 CATATTAATGATGTTCAAACTATGACATAATTAAAGAC
1 CATATTAATGATGTTCAAACTATGACATAATTAAAGAC
24501185 ACAAACTAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.44, C:0.13, G:0.10, T:0.32
Consensus pattern (39 bp):
CATATTAATGATGTTCAAACTATGACATAATTAAAGACT
Found at i:24515842 original size:33 final size:33
Alignment explanation
Indices: 24515800--24515865 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
24515790 CTAAACCCTT
*
24515800 ATGCAAATTATTGGAGAAGTACACGACGTTCAA
1 ATGCAAATTATTGGAGAAGGACACGACGTTCAA
24515833 ATGCAAATTATTGGAGAAGGACACGACGTTCAA
1 ATGCAAATTATTGGAGAAGGACACGACGTTCAA
24515866 GTTCGATGAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.23
Consensus pattern (33 bp):
ATGCAAATTATTGGAGAAGGACACGACGTTCAA
Found at i:24518861 original size:21 final size:20
Alignment explanation
Indices: 24518813--24518861 Score: 50
Period size: 19 Copynumber: 2.5 Consensus size: 20
24518803 TAAGACCTAA
*
24518813 TTTTCACTT-AATTTTTAAT
1 TTTTCAATTCAATTTTTAAT
*
24518832 TTTT--TTTCAATTATTTAAT
1 TTTTCAATTCAATT-TTTAAT
24518851 TTTTCAATTCA
1 TTTTCAATTCA
24518862 TTGAATTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
17 2 0.08
18 4 0.17
19 14 0.58
21 4 0.17
ACGTcount: A:0.27, C:0.10, G:0.00, T:0.63
Consensus pattern (20 bp):
TTTTCAATTCAATTTTTAAT
Found at i:24518868 original size:17 final size:16
Alignment explanation
Indices: 24518834--24518868 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
24518824 TTTTTAATTT
*
24518834 TTTTTCAATTATTTAA
1 TTTTTCAATTATTGAA
24518850 TTTTTCAATTCATTGAA
1 TTTTTCAATT-ATTGAA
24518867 TT
1 TT
24518869 ATTAGTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.29, C:0.09, G:0.03, T:0.60
Consensus pattern (16 bp):
TTTTTCAATTATTGAA
Found at i:24527317 original size:39 final size:39
Alignment explanation
Indices: 24527273--24527393 Score: 188
Period size: 39 Copynumber: 3.1 Consensus size: 39
24527263 AATTATATTA
* *
24527273 CCAGCACAAAGCCTGCGGGACTTTAGCTCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
24527312 CCAGCACGAAGCCTGCGGGATTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* * *
24527351 CCAGCACGAAGCCTGCGGGTCTTTAGCCCAGATACGTTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
24527390 CCAG
1 CCAG
24527394 TGTCTTGCTT
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Done.