Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 78 of 250
Found at i:24872612 original size:81 final size:81
Alignment explanation
Indices: 24872495--24872692 Score: 301
Period size: 81 Copynumber: 2.4 Consensus size: 81
24872485 GTAATTTCAC
* * * *
24872495 AATCGAGGGTAAAACGATAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCGAA-GG
1 AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAATGGTAATTTTGTAAATC-AAGGG
24872558 TGAAACAGTAATTCTATA
64 TGAAACAGTAATTCTATA
*
24872576 AATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCAAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCAAGGGTG
*
24872641 AAACGGTAATTCTATA
66 AAACAGTAATTCTATA
*
24872657 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGG
24872693 CATTTCAGTA
Statistics
Matches: 107, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
80 2 0.02
81 104 0.97
82 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCAAGGGTG
AAACAGTAATTCTATA
Found at i:24881442 original size:47 final size:47
Alignment explanation
Indices: 24881368--24881521 Score: 263
Period size: 47 Copynumber: 3.3 Consensus size: 47
24881358 TCCTTCGGGA
*
24881368 CTTATCACATATATACACTTTCCCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*** *
24881415 CTTATCACATATATACACTTTCACATTCATCACATTTTCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24881462 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24881509 CTTATCACATATA
1 CTTATCACATATA
24881522 CATATCTTGT
Statistics
Matches: 98, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 98 1.00
ACGTcount: A:0.29, C:0.30, G:0.06, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24883387 original size:13 final size:13
Alignment explanation
Indices: 24883369--24883393 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24883359 TACTAAATTT
24883369 TCATGGATTCAAA
1 TCATGGATTCAAA
24883382 TCATGGATTCAA
1 TCATGGATTCAA
24883394 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:24887619 original size:61 final size:61
Alignment explanation
Indices: 24887524--24887646 Score: 201
Period size: 61 Copynumber: 2.0 Consensus size: 61
24887514 ACTGTAATTG
* * * *
24887524 TGTTGATAGATCTAGGATCGACTCATTCTTATGTATGTGAAACTTTTGTATCTAGTGAGAC
1 TGTTGATAGATCCAGGATCGACACATTCTTATGTATGTGAAACTTTAGTATCTAGTAAGAC
*
24887585 TGTTGATAGATCCAGTATCGACACATTCTTATGTATGTGAAACTTTAGTATCTAGTAAGAC
1 TGTTGATAGATCCAGGATCGACACATTCTTATGTATGTGAAACTTTAGTATCTAGTAAGAC
24887646 T
1 T
24887647 TTGCCTGTAG
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
61 57 1.00
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.38
Consensus pattern (61 bp):
TGTTGATAGATCCAGGATCGACACATTCTTATGTATGTGAAACTTTAGTATCTAGTAAGAC
Found at i:24887825 original size:21 final size:21
Alignment explanation
Indices: 24887801--24887845 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
24887791 GAATTTGATA
*
24887801 TAATTCTGGGTACGGATTGGT
1 TAATTCTGGGTACAGATTGGT
24887822 TAATTCTGGGTACAGATTGGT
1 TAATTCTGGGTACAGATTGGT
24887843 TAA
1 TAA
24887846 CACTGCATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.24, C:0.09, G:0.29, T:0.38
Consensus pattern (21 bp):
TAATTCTGGGTACAGATTGGT
Found at i:24892950 original size:41 final size:41
Alignment explanation
Indices: 24892899--24892982 Score: 116
Period size: 41 Copynumber: 2.0 Consensus size: 41
24892889 TCTATTGCAA
* * * *
24892899 ATTTTTCAATTTAATATTATAATATCTGAA-GCTATTTTGCC
1 ATTTTCCAATTTAATACTACAATATCT-AAGGCAATTTTGCC
24892940 ATTTTCCAATTTAATACTACAATATCTAAGGCAATTTTGCC
1 ATTTTCCAATTTAATACTACAATATCTAAGGCAATTTTGCC
24892981 AT
1 AT
24892983 AATTTTAATG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
40 2 0.05
41 36 0.95
ACGTcount: A:0.33, C:0.15, G:0.07, T:0.44
Consensus pattern (41 bp):
ATTTTCCAATTTAATACTACAATATCTAAGGCAATTTTGCC
Found at i:24895378 original size:30 final size:31
Alignment explanation
Indices: 24895334--24895410 Score: 81
Period size: 31 Copynumber: 2.5 Consensus size: 31
24895324 AATTTGATAA
24895334 ATAAA-TTTTAATTTTGTGC-AAT-TATACAT
1 ATAAACTTTT-ATTTTGTGCAAATGTATACAT
*
24895363 ATTAAACTTTTATTTTGGTTCAAATGTATACAT
1 A-TAAACTTTTATTTT-GTGCAAATGTATACAT
*
24895396 A-AAACTTTGATTTTG
1 ATAAACTTTTATTTTG
24895411 ATTTAATTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
29 1 0.02
30 10 0.24
31 19 0.46
32 3 0.07
33 8 0.20
ACGTcount: A:0.35, C:0.08, G:0.09, T:0.48
Consensus pattern (31 bp):
ATAAACTTTTATTTTGTGCAAATGTATACAT
Found at i:24896730 original size:46 final size:48
Alignment explanation
Indices: 24896672--24896893 Score: 201
Period size: 46 Copynumber: 4.7 Consensus size: 48
24896662 ATTCGTGGGT
* **
24896672 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCA-T-ATTCTGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACTGAGACTGA
* *
24896718 GAGCCAGTGTAAGACCATGTTTGGGACATGACATCGG-CATTGAGAC-GA
1 GAGCCAGTGTAAGA-CATGTCTGGGACATG-CATCGGCCACTGAGACTGA
* * ** * *
24896766 GTGCTAGTACAAGACATGTGTGGGACATGCATCGGCCTC-GAGACAT-A
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACTGAGAC-TGA
* *
24896813 -AGCCAGTGTAAGACATGTCGGGGACATGCATCGGCTAC-GAGA-TGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACTGAGACTGA
* *
24896858 TAGTCAGTGTAAGACCATGTCTGGGACATGACATCG
1 GAGCCAGTGTAAGA-CATGTCTGGGACATG-CATCG
24896894 ACTCGAGATA
Statistics
Matches: 144, Mismatches: 21, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 70 0.49
47 46 0.32
48 24 0.17
49 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (48 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACTGAGACTGA
Found at i:24896901 original size:47 final size:47
Alignment explanation
Indices: 24896677--24896941 Score: 149
Period size: 47 Copynumber: 5.7 Consensus size: 47
24896667 TGGGTGAGCT
* * ** *
24896677 AGTGTAAGA-CATGTCTGGGACATGCATCGGC-C-ATATTCTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGACTCGAGATGAT-A-AGTC
* * * *
24896723 AGTGTAAGACCATGTTTGGGACATGACATCGGCATTGAGACG---AGTGC
1 AGTGTAAGACCATGTCTGGGACATG-CATCGAC-TCGAGATGATAAGT-C
** * * * *
24896770 TAGTACAAGA-CATGTGTGGGACATGCATCGGCCTCGAGA-CATAAGCC
1 -AGTGTAAGACCATGTCTGGGACATGCATC-GACTCGAGATGATAAGTC
* *
24896817 AGTGTAAGA-CATGTCGGGGACATGCATCGGCTACGAGATGAT-AGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGACT-CGAGATGATAAGTC
*
24896863 AGTGTAAGACCATGTCTGGGACATGACATCGACTCGAGAT-ATGAG-C
1 AGTGTAAGACCATGTCTGGGACATG-CATCGACTCGAGATGATAAGTC
* * * *
24896909 TAGTATAAGACCGTGTCTAGTACATGGCATCGA
1 -AGTGTAAGACCATGTCTGGGACAT-GCATCGA
24896942 TACCTTACCC
Statistics
Matches: 175, Mismatches: 26, Indels: 35
0.74 0.11 0.15
Matches are distributed among these distances:
45 3 0.02
46 64 0.37
47 82 0.47
48 24 0.14
51 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGACTCGAGATGATAAGTC
Found at i:24896934 original size:140 final size:141
Alignment explanation
Indices: 24896677--24896940 Score: 320
Period size: 140 Copynumber: 1.9 Consensus size: 141
24896667 TGGGTGAGCT
* * ** *
24896677 AGTGTAAGACATGTCTGGGACATGCATCGGCCATATTCTGAGAGCCAGTGTAAGACCATGTTTGG
1 AGTGTAAGACATGTCGGGGACATGCATCGGCCAGATGATGAGAGCCAGTGTAAGACCATGTCTGG
* * * * *
24896742 GACATGACATCGGCATTGAGACGAGTGCTAGTACAAGACATGTGTGGGACAT-GCATCGGCCTCG
66 GACATGACATCGACATCGAGACGAGAGCTAGTACAAGACATGTCTAGGACATGGCATCGGCCTCG
24896806 AGACATAAGCC
131 AGACATAAGCC
* * *
24896817 AGTGTAAGACATGTCGGGGACATGCATCGGCTACGA-GATGATAGTCAGTGTAAGACCATGTCTG
1 AGTGTAAGACATGTCGGGGACATGCATCGGCCA-GATGATGAGAGCCAGTGTAAGACCATGTCTG
* * * *
24896881 GGACATGACATCGAC-TCGAGA-TATGAGCTAGTATAAGACCGTGTCTAGTACATGGCATCG
65 GGACATGACATCGACATCGAGACGA-GAGCTAGTACAAGA-CATGTCTAGGACATGGCATCG
24896941 ATACCTTACC
Statistics
Matches: 103, Mismatches: 17, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
138 1 0.01
139 17 0.17
140 78 0.76
141 7 0.07
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (141 bp):
AGTGTAAGACATGTCGGGGACATGCATCGGCCAGATGATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGACATCGACATCGAGACGAGAGCTAGTACAAGACATGTCTAGGACATGGCATCGGCCTCG
AGACATAAGCC
Found at i:24899004 original size:942 final size:942
Alignment explanation
Indices: 24897181--24899065 Score: 3592
Period size: 942 Copynumber: 2.0 Consensus size: 942
24897171 ATTGATAAAT
24897181 TGTTGTTGTATACTAACTTATATGCAACTTACTAAGTTGTTATGCTTACTCCCCTCTCTTTTCAT
1 TGTTGTTGTATACTAACTTATATGCAACTTACTAAGTTGTTATGCTTACTCCCCTCTCTTTTCAT
24897246 TTTCTTACAGTGCCGCCTAATTAGCTCAAGGATCACCGGAAGTTAGAGATATCGATCACACTATC
66 TTTCTTACAGTGCCGCCTAATTAGCTCAAGGATCACCGGAAGTTAGAGATATCGATCACACTATC
*
24897311 AACTGAAGCATTCAATATAGTTGGATTTATATTTTTGAATTTGGCATGTATAGGATTTAGACTTT
131 AACTGAAACATTCAATATAGTTGGATTTATATTTTTGAATTTGGCATGTATAGGATTTAGACTTT
24897376 CTTATTTTGTGTCATTGGGGTTTGGCCATATATATTAGCTTGGGTTGGAAACCCTTCAATTTGTA
196 CTTATTTTGTGTCATTGGGGTTTGGCCATATATATTAGCTTGGGTTGGAAACCCTTCAATTTGTA
24897441 TTAAGCCTTGAATGATGGCTAACATTCATTTGAATTTATAAAAGATGCATTATCATGGGCTTATT
261 TTAAGCCTTGAATGATGGCTAACATTCATTTGAATTTATAAAAGATGCATTATCATGGGCTTATT
24897506 TTGGTATTGGTTGGTATTTGTGTAGAACTACATATGTAAGGGTGGCAATAGGGATTGGTAAATAG
326 TTGGTATTGGTTGGTATTTGTGTAGAACTACATATGTAAGGGTGGCAATAGGGATTGGTAAATAG
24897571 CCTTATATTGTCTACACGGGTAGGCACACGGGCATGTGACTTGGCCGTGTGAGACACACGATCTT
391 CCTTATATTGTCTACACGGGTAGGCACACGGGCATGTGACTTGGCCGTGTGAGACACACGATCTT
*
24897636 TCCCATGGGCGTGTGGTCAGGACGCGTGTCCCCTGCACATAAAATTTTTAAGTCAATATGCATGA
456 TCCCATGGGCGTGTGGTCAGGACGCGTGTCCCCTGCACATAAAAATTTTAAGTCAATATGCATGA
* *
24897701 TAATAAACACACGAGTAGAGACACGGCTATGTGTATTAGCCGTGTGAAGGGCAAGGCCTAGCACA
521 TAATAAACACACGAGTAGAGACACGGCTATGTGTATTAGCCGTGTGAAGGGCAAGACCTAACACA
*
24897766 CGGGTGTGTGCCTTGGCCGTGTGATATTTGGGGTTGCTAATGTCAAAAACAGAATGTCCATATTT
586 CGGGTGTGTGCCTTGGCCGTGTGATATTTGGGGTTGCTAACGTCAAAAACAGAATGTCCATATTT
*
24897831 TTGTACATAGGCTAGTACACGGGCGTGTCATGGCTGTGTGAAAGACACGGGCTAGGCACACGGGC
651 TTGTACATAGGCTAGTACACGGGCGTGTCATGGCTGTGTGAAAGACACGGGCCAGGCACACGGGC
* *
24897896 ATCTGCCAAGTCGTGTGAAAACCCCTGTAGGTGTGTATTTAAAATAAATTCCACACGATTGGAGG
716 ATCTGCCAAGTCGTGTGAAAACCCCTGTAGGTGTGTATTTAAAATAAATTCCACACGAGTGGAAG
*
24897961 ATACGAGGCATGTCCTTTTATTGCTTAGGCCGTGTAAGCCACACGGGCCATCAACACGACCATGT
781 ACACGAGGCATGTCCTTTTATTGCTTAGGCCGTGTAAGCCACACGGGCCATCAACACGACCATGT
*
24898026 TGAATTGGCCACACGGGCGTGTGCCTCTATGTCATGTGACATTTTTCTATAGTTGGCAAAAGTAC
846 TGAATTGGCCACACGGGCGTGTGCCTCTATGTCATGTGACATTTTTATATAGTTGGCAAAAGTAC
24898091 CCGAGTTGGTTCCGAATAATTTACGATGTGTG
911 CCGAGTTGGTTCCGAATAATTTACGATGTGTG
* *
24898123 TGTTGTTGTATACTTACTTATATGCAACTTACTAAGTTGTTATGCTTACTCCCTTCTCTTTTCAT
1 TGTTGTTGTATACTAACTTATATGCAACTTACTAAGTTGTTATGCTTACTCCCCTCTCTTTTCAT
24898188 TTTCTTACAGTGCCGCCTAATTAGCTCAAGGATCACCGGAAGTTAGAGATATCGATCACACTATC
66 TTTCTTACAGTGCCGCCTAATTAGCTCAAGGATCACCGGAAGTTAGAGATATCGATCACACTATC
24898253 AACTGAAACATTCAATATAGTTGGATTTATATTTTTGAATTTGGCATGTATAGGATTTAGACTTT
131 AACTGAAACATTCAATATAGTTGGATTTATATTTTTGAATTTGGCATGTATAGGATTTAGACTTT
*
24898318 CTTATTTTGTGTCATTGGGGTTTGGCCATATATATTAGCTTGGGTTGGAAACTCTTCAATTTGTA
196 CTTATTTTGTGTCATTGGGGTTTGGCCATATATATTAGCTTGGGTTGGAAACCCTTCAATTTGTA
24898383 TTAAGCCTTGAATGATGGCTAACATTCATTTGAATTTATAAAAGATGCATTATCATGGGCTTATT
261 TTAAGCCTTGAATGATGGCTAACATTCATTTGAATTTATAAAAGATGCATTATCATGGGCTTATT
24898448 TTGGTATTGGTTGGTATTTGTGTAGAACTACATATGTAAGGGTGGCAATAGGGATTGGTAAATAG
326 TTGGTATTGGTTGGTATTTGTGTAGAACTACATATGTAAGGGTGGCAATAGGGATTGGTAAATAG
24898513 CCTTATATTGTCTACACGGGTAGGCACACGGGCATGTGACTTGGCCGTGTGAGACACACGATCTT
391 CCTTATATTGTCTACACGGGTAGGCACACGGGCATGTGACTTGGCCGTGTGAGACACACGATCTT
*
24898578 TCCCATGGGCGTGTGGTCAGGACGCGTGTCCCCTGCACATAAAAATTTTAATTCAATATGCATGA
456 TCCCATGGGCGTGTGGTCAGGACGCGTGTCCCCTGCACATAAAAATTTTAAGTCAATATGCATGA
24898643 TAATAAACACACGAGTAGAGACACGGCTATGTGTATTAGCCGTGTGAAGGGCACA-ACCTAACAC
521 TAATAAACACACGAGTAGAGACACGGCTATGTGTATTAGCCGTGTGAAGGGCA-AGACCTAACAC
24898707 ACGGGTGTGTGCCTTGGCCGTGTGATATTTGGGGTTGCTAACGTCAAAAACAGAATGTCCATATT
585 ACGGGTGTGTGCCTTGGCCGTGTGATATTTGGGGTTGCTAACGTCAAAAACAGAATGTCCATATT
24898772 TTTGTACATAGGCTAGTACACGGGCGTGTCATGGCTGTGTGAAAGACACGGGCCAGGCACACGGG
650 TTTGTACATAGGCTAGTACACGGGCGTGTCATGGCTGTGTGAAAGACACGGGCCAGGCACACGGG
* * *
24898837 CATGTGCCAAGTCGTGTGACAACCCCTGTAGGTGTGTATTTAAAATAAATTCTACACGAGTGGAA
715 CATCTGCCAAGTCGTGTGAAAACCCCTGTAGGTGTGTATTTAAAATAAATTCCACACGAGTGGAA
24898902 GACACGAGGCATGTCCTTTTATTGCTTAGGCCGTGTAAGCCACACGGGCCATCAACACGACCATG
780 GACACGAGGCATGTCCTTTTATTGCTTAGGCCGTGTAAGCCACACGGGCCATCAACACGACCATG
24898967 TTGAATTGGCCACACGGGCGTGTGCCTCTATGTCATGTGACATTTTTATATAGTTGGCAAAAGTA
845 TTGAATTGGCCACACGGGCGTGTGCCTCTATGTCATGTGACATTTTTATATAGTTGGCAAAAGTA
*
24899032 CCCGAGTTGGTTCCGAATGATTTACGATGTGTG
910 CCCGAGTTGGTTCCGAATAATTTACGATGTGTG
24899065 T
1 T
24899066 TTTGGGCCTT
Statistics
Matches: 924, Mismatches: 18, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
942 923 1.00
943 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (942 bp):
TGTTGTTGTATACTAACTTATATGCAACTTACTAAGTTGTTATGCTTACTCCCCTCTCTTTTCAT
TTTCTTACAGTGCCGCCTAATTAGCTCAAGGATCACCGGAAGTTAGAGATATCGATCACACTATC
AACTGAAACATTCAATATAGTTGGATTTATATTTTTGAATTTGGCATGTATAGGATTTAGACTTT
CTTATTTTGTGTCATTGGGGTTTGGCCATATATATTAGCTTGGGTTGGAAACCCTTCAATTTGTA
TTAAGCCTTGAATGATGGCTAACATTCATTTGAATTTATAAAAGATGCATTATCATGGGCTTATT
TTGGTATTGGTTGGTATTTGTGTAGAACTACATATGTAAGGGTGGCAATAGGGATTGGTAAATAG
CCTTATATTGTCTACACGGGTAGGCACACGGGCATGTGACTTGGCCGTGTGAGACACACGATCTT
TCCCATGGGCGTGTGGTCAGGACGCGTGTCCCCTGCACATAAAAATTTTAAGTCAATATGCATGA
TAATAAACACACGAGTAGAGACACGGCTATGTGTATTAGCCGTGTGAAGGGCAAGACCTAACACA
CGGGTGTGTGCCTTGGCCGTGTGATATTTGGGGTTGCTAACGTCAAAAACAGAATGTCCATATTT
TTGTACATAGGCTAGTACACGGGCGTGTCATGGCTGTGTGAAAGACACGGGCCAGGCACACGGGC
ATCTGCCAAGTCGTGTGAAAACCCCTGTAGGTGTGTATTTAAAATAAATTCCACACGAGTGGAAG
ACACGAGGCATGTCCTTTTATTGCTTAGGCCGTGTAAGCCACACGGGCCATCAACACGACCATGT
TGAATTGGCCACACGGGCGTGTGCCTCTATGTCATGTGACATTTTTATATAGTTGGCAAAAGTAC
CCGAGTTGGTTCCGAATAATTTACGATGTGTG
Found at i:24904840 original size:53 final size:54
Alignment explanation
Indices: 24904772--24904978 Score: 209
Period size: 53 Copynumber: 3.8 Consensus size: 54
24904762 TTCCTTTTTA
* * *
24904772 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * *
24904825 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
*** * * * * * *
24904879 TGGGTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
24904934 AACTTACCAATGTCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
24904979 AAACCCTAAT
Statistics
Matches: 121, Mismatches: 31, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
53 46 0.38
54 36 0.30
55 39 0.32
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:24907968 original size:46 final size:46
Alignment explanation
Indices: 24907815--24908035 Score: 171
Period size: 46 Copynumber: 4.7 Consensus size: 46
24907805 ATTTGTGTGT
* * * **
24907815 GAGCTAGTGTAAGAGATGTCTGGGACATACATCGGCCAT--ATTCTGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CATCGAGAC-GA
* *
24907861 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCGAGACGA
* * * * *
24907909 GGGCTAGTATAAGACATGTTTGGGACATGCATCGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACG-A
* * *
24907956 -AGCCAGTGTAAGACATGTCCGGGACATGCATCGGC-TACAAGATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCAT-CGAGACGA
* * * *
24908001 TAGTCAATGCAAGACCATGTCTGGGACATGGCATC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
24908036 CACTTGATAT
Statistics
Matches: 142, Mismatches: 24, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
45 2 0.01
46 72 0.51
47 43 0.30
48 23 0.16
49 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGA
Found at i:24908372 original size:32 final size:32
Alignment explanation
Indices: 24908336--24908405 Score: 131
Period size: 32 Copynumber: 2.2 Consensus size: 32
24908326 TTGTTGTATA
24908336 CTTACTTATATACAACTTACTAAGCTGCTATG
1 CTTACTTATATACAACTTACTAAGCTGCTATG
*
24908368 CTTACTTATATGCAACTTACTAAGCTGCTATG
1 CTTACTTATATACAACTTACTAAGCTGCTATG
24908400 CTTACT
1 CTTACT
24908406 CCCTTCTCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.29, C:0.23, G:0.10, T:0.39
Consensus pattern (32 bp):
CTTACTTATATACAACTTACTAAGCTGCTATG
Found at i:24908373 original size:17 final size:17
Alignment explanation
Indices: 24908351--24908405 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 17
24908341 TTATATACAA
24908351 CTTACTAAGCTGCTATG
1 CTTACTAAGCTGCTATG
* ** *
24908368 CTTACTTATATGC-A-A
1 CTTACTAAGCTGCTATG
24908383 CTTACTAAGCTGCTATG
1 CTTACTAAGCTGCTATG
24908400 CTTACT
1 CTTACT
24908406 CCCTTCTCTT
Statistics
Matches: 28, Mismatches: 8, Indels: 4
0.70 0.20 0.10
Matches are distributed among these distances:
15 10 0.36
16 2 0.07
17 16 0.57
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (17 bp):
CTTACTAAGCTGCTATG
Found at i:24917601 original size:35 final size:35
Alignment explanation
Indices: 24917554--24917654 Score: 139
Period size: 35 Copynumber: 2.9 Consensus size: 35
24917544 CTATTTGGCT
24917554 TGTTTCGATTGGACTAGCTCTTATGAGCATTGACG
1 TGTTTCGATTGGACTAGCTCTTATGAGCATTGACG
* * *
24917589 TGTTTCGGTTGGACTAGCTCTTATGAGCGTTGGCG
1 TGTTTCGATTGGACTAGCTCTTATGAGCATTGACG
** * *
24917624 CATTTCAATTGGACTAGCTCTTGTGAGCATT
1 TGTTTCGATTGGACTAGCTCTTATGAGCATT
24917655 TGGTGTATTT
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 57 1.00
ACGTcount: A:0.18, C:0.18, G:0.27, T:0.38
Consensus pattern (35 bp):
TGTTTCGATTGGACTAGCTCTTATGAGCATTGACG
Found at i:24918352 original size:18 final size:18
Alignment explanation
Indices: 24918329--24918363 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
24918319 AGTTTATATG
24918329 AGCTTACTAAGCATTCAT
1 AGCTTACTAAGCATTCAT
24918347 AGCTTACTAAGCATTCA
1 AGCTTACTAAGCATTCA
24918364 CATAATTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.31
Consensus pattern (18 bp):
AGCTTACTAAGCATTCAT
Found at i:24921462 original size:20 final size:19
Alignment explanation
Indices: 24921439--24921505 Score: 55
Period size: 20 Copynumber: 3.4 Consensus size: 19
24921429 ACATTCGTGT
24921439 CCCTGTTCATACTTCGATAC
1 CCCTGTTCATACTTCG-TAC
* *
24921459 CCCTGTTTGCACA-TTCGTGC
1 CCCTG-TT-CATACTTCGTAC
* *
24921479 CCCTCTTCATACTTTGCTAC
1 CCCTGTTCATACTTCG-TAC
24921499 CCCTGTT
1 CCCTGTT
24921506 TGCACATTCG
Statistics
Matches: 36, Mismatches: 7, Indels: 8
0.71 0.14 0.16
Matches are distributed among these distances:
18 3 0.08
19 5 0.14
20 19 0.53
21 6 0.17
22 3 0.08
ACGTcount: A:0.13, C:0.37, G:0.12, T:0.37
Consensus pattern (19 bp):
CCCTGTTCATACTTCGTAC
Found at i:24921562 original size:20 final size:20
Alignment explanation
Indices: 24921458--24921607 Score: 92
Period size: 20 Copynumber: 7.5 Consensus size: 20
24921448 TACTTCGATA
*
24921458 CCCCTGTTTGCACATTCGTG
1 CCCCTATTTGCACATTCGTG
* * * *
24921478 CCCCT-CTT-CATACTTTGCTA
1 CCCCTATTTGCACA-TTCG-TG
* *
24921498 CCCCTGTTTGCACATTCGAG
1 CCCCTATTTGCACATTCGTG
* * * *
24921518 CCCTTGTTTGTAC-TTCGGTA
1 CCCCTATTTGCACATTC-GTG
*
24921538 TCCCTATTTGCACATTCGTG
1 CCCCTATTTGCACATTCGTG
* * *
24921558 CCCCTTTTTGTAC-TTCGGTA
1 CCCCTATTTGCACATTC-GTG
*
24921578 CCCCTATTTGCACATACGTG
1 CCCCTATTTGCACATTCGTG
24921598 CCCCTATTTG
1 CCCCTATTTG
24921608 TACTTAAGTA
Statistics
Matches: 96, Mismatches: 26, Indels: 16
0.70 0.19 0.12
Matches are distributed among these distances:
18 3 0.03
19 11 0.11
20 69 0.72
21 10 0.10
22 3 0.03
ACGTcount: A:0.13, C:0.33, G:0.15, T:0.38
Consensus pattern (20 bp):
CCCCTATTTGCACATTCGTG
Found at i:24921608 original size:40 final size:40
Alignment explanation
Indices: 24921424--24921623 Score: 229
Period size: 40 Copynumber: 5.0 Consensus size: 40
24921414 TTATTGAATG
* ** * *
24921424 TTTGCACATTCGTGTCCCTGTTCATACTTCGATACCCCTG
1 TTTGCACATTCGTGCCCCTGTTTGTACTTCGGTACCCCTA
* ** * * *
24921464 TTTGCACATTCGTGCCCCTCTTCATACTTTGCTACCCCTG
1 TTTGCACATTCGTGCCCCTGTTTGTACTTCGGTACCCCTA
* * *
24921504 TTTGCACATTCGAGCCCTTGTTTGTACTTCGGTATCCCTA
1 TTTGCACATTCGTGCCCCTGTTTGTACTTCGGTACCCCTA
*
24921544 TTTGCACATTCGTGCCCCTTTTTGTACTTCGGTACCCCTA
1 TTTGCACATTCGTGCCCCTGTTTGTACTTCGGTACCCCTA
* * **
24921584 TTTGCACATACGTGCCCCTATTTGTACTTAAGTACCCCTA
1 TTTGCACATTCGTGCCCCTGTTTGTACTTCGGTACCCCTA
24921624 AAATATATGA
Statistics
Matches: 139, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 139 1.00
ACGTcount: A:0.15, C:0.32, G:0.14, T:0.38
Consensus pattern (40 bp):
TTTGCACATTCGTGCCCCTGTTTGTACTTCGGTACCCCTA
Found at i:24921621 original size:20 final size:20
Alignment explanation
Indices: 24921558--24921623 Score: 69
Period size: 20 Copynumber: 3.3 Consensus size: 20
24921548 CACATTCGTG
* **
24921558 CCCCTTTTTGTACTTCGGTA
1 CCCCTATTTGTACTTAAGTA
* * * *
24921578 CCCCTATTTGCACATACGTG
1 CCCCTATTTGTACTTAAGTA
24921598 CCCCTATTTGTACTTAAGTA
1 CCCCTATTTGTACTTAAGTA
24921618 CCCCTA
1 CCCCTA
24921624 AAATATATGA
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.18, C:0.33, G:0.12, T:0.36
Consensus pattern (20 bp):
CCCCTATTTGTACTTAAGTA
Found at i:24923462 original size:29 final size:27
Alignment explanation
Indices: 24923444--24923513 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
24923434 ATATTAAGTC
24923444 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
24923471 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
24923499 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
24923514 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:24923507 original size:28 final size:28
Alignment explanation
Indices: 24923444--24923541 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
24923434 ATATTAAGTC
*
24923444 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
24923471 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
24923499 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
24923528 CGCACACTTAGTGC
1 CGCACACTTAGTGC
24923542 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:24927967 original size:40 final size:40
Alignment explanation
Indices: 24927912--24928055 Score: 198
Period size: 40 Copynumber: 3.6 Consensus size: 40
24927902 ATAACTTCGA
24927912 CTATATATGGCACTTAGTGTGTGATTCGACATAGCTTTGG
1 CTATATATGGCACTTAGTGTGTGATTCGACATAGCTTTGG
* **
24927952 CTATATATGGCACTTAGTATGTGATTCGACATAGCTTCAG
1 CTATATATGGCACTTAGTGTGTGATTCGACATAGCTTTGG
* * *
24927992 CTATATATGGCACTTAGTGTGCGATTTGAGATAGCTTTGG
1 CTATATATGGCACTTAGTGTGTGATTCGACATAGCTTTGG
* * * *
24928032 CTATGTACGACACTTAATGTGTGA
1 CTATATATGGCACTTAGTGTGTGA
24928056 GATATCGAGC
Statistics
Matches: 90, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.36
Consensus pattern (40 bp):
CTATATATGGCACTTAGTGTGTGATTCGACATAGCTTTGG
Found at i:24933960 original size:46 final size:46
Alignment explanation
Indices: 24933910--24934085 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
24933900 TGGTTGAGCA
*
24933910 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
24933956 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
24934003 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
24934049 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
24934086 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 64 0.59
47 28 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:24934066 original size:93 final size:93
Alignment explanation
Indices: 24933907--24934078 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
24933897 GGATGGTTGA
* ***
24933907 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
24933972 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
24934000 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
24934065 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
24934079 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:24937799 original size:46 final size:46
Alignment explanation
Indices: 24937746--24937836 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
24937736 TATATATACA
* *
24937746 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATATC
* * * *
24937792 CATCTCATACCCGTTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATAT
24937837 ATACACTTCC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.25, C:0.32, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:24937879 original size:22 final size:22
Alignment explanation
Indices: 24937853--24937928 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
24937843 TTCCACGTTC
24937853 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
24937875 ATCACATATATG-CATGT-T-CACATT
1 ATCACAT-T-GGCCAT-TCTGC-C-TT
*
24937899 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCTGCCTT
24937922 ATCACAT
1 ATCACAT
24937929 ATATGCATGT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:24937884 original size:47 final size:47
Alignment explanation
Indices: 24937810--24938237 Score: 660
Period size: 47 Copynumber: 9.1 Consensus size: 47
24937800 ACCCGTTTCG
* * * * * *
24937810 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
*
24937857 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
24937904 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
24937951 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
24937998 CATTGGCCATTCGGCATTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
24938045 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
24938092 CGTTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
24938139 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * **
24938186 CATTGGCCATTTGGCCTTATCTCATATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTA--TCACATATATGCATGTTCACATTCATCA
24938235 CAT
1 CAT
24938238 AAAATCCTAA
Statistics
Matches: 357, Mismatches: 21, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 330 0.92
49 26 0.07
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:24942752 original size:21 final size:21
Alignment explanation
Indices: 24942726--24942765 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
24942716 GATACATTAT
24942726 TTTGTTATT-ATTTTACTTAAG
1 TTTGTTATTGA-TTTACTTAAG
24942747 TTTGTTATTGATTTACTTA
1 TTTGTTATTGATTTACTTA
24942766 TTTAACCTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.23, C:0.05, G:0.10, T:0.62
Consensus pattern (21 bp):
TTTGTTATTGATTTACTTAAG
Found at i:24953588 original size:26 final size:26
Alignment explanation
Indices: 24953559--24953640 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
24953549 TGATACAAAT
24953559 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
24953585 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
24953611 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
24953637 TGAT
1 TGAT
24953641 GGGAATTTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:24955293 original size:27 final size:27
Alignment explanation
Indices: 24955244--24955384 Score: 189
Period size: 27 Copynumber: 5.2 Consensus size: 27
24955234 AGGAAGCATC
* *
24955244 CTGGTGGCTATGCTACA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGAT
*
24955271 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
*
24955298 CTGGTGGCTATGCCACGAT-TATCTGAT
1 CTGGTGGCTCTGCCAC-ATATATCTGAT
*
24955325 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
24955352 CTGGTGGCTCTGCCACA-ATATCTGTAT
1 CTGGTGGCTCTGCCACATATATCTG-AT
24955379 CTGGTG
1 CTGGTG
24955385 ACTTCATCAC
Statistics
Matches: 102, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
26 9 0.09
27 90 0.88
28 3 0.03
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:24955326 original size:54 final size:53
Alignment explanation
Indices: 24955244--24955384 Score: 228
Period size: 54 Copynumber: 2.6 Consensus size: 53
24955234 AGGAAGCATC
*
24955244 CTGGTGGCTATGCTACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
24955298 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
24955352 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
24955385 ACTTCATCAC
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 7 0.09
54 75 0.91
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:24964252 original size:33 final size:33
Alignment explanation
Indices: 24964160--24964252 Score: 97
Period size: 28 Copynumber: 3.0 Consensus size: 33
24964150 TAATAGTCTA
* * *
24964160 GGCCTGAGCCCTATTCAGTATCAGTACAGTCTG
1 GGCCTAAGCCCTATACAGTATCAGTACAGTGTG
* *
24964193 GGACTTAGCCCTATACAGTA--A-T--AGTGTG
1 GGCCTAAGCCCTATACAGTATCAGTACAGTGTG
*
24964221 GGCCTAAGCCCAATACAGTATCAGTACAGTGT
1 GGCCTAAGCCCTATACAGTATCAGTACAGTGT
24964253 AATGCAATTA
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
28 22 0.46
30 2 0.04
31 2 0.04
33 22 0.46
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (33 bp):
GGCCTAAGCCCTATACAGTATCAGTACAGTGTG
Found at i:24964629 original size:27 final size:27
Alignment explanation
Indices: 24964599--24965267 Score: 755
Period size: 27 Copynumber: 24.5 Consensus size: 27
24964589 CATAATCATG
* * *
24964599 ATTTTACCATATAGGGGTATTACGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
* *
24964626 ATTTTACCCTACGGGGGCATTACAGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
*
24964653 ATTTTACCCTACAGGGGCATTACAGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
*
24964680 ATTTTACCCTACAGGGGTATTACGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
* *
24964707 ATTTTACCCTATAGGGGCATTACGATC
1 ATTTTACCCTACAGGGGCATTACGGTC
* * *
24964734 ATTTTACCCTACAGGGGTATTATGGTA
1 ATTTTACCCTACAGGGGCATTACGGTC
* * *
24964761 ATTTTTCCCTGCAGAGGCATTACGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
* * * *
24964788 ATTTTACCCTGCAGAGGTATTATGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
* *
24964815 ATTTTACCCTATAGGGGCATTACGATC
1 ATTTTACCCTACAGGGGCATTACGGTC
* *
24964842 ATTGTACCCTACAGGGGTATTACGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
* * *
24964869 ATTGTATCCTACAGGGGTATTACGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
*
24964896 ATTTTA-CCTACAGGGGCATTACAGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
* * *
24964922 ATTTTACCCTACAAGGGCACTACGATC
1 ATTTTACCCTACAGGGGCATTACGGTC
* * **
24964949 ATTTTAACCTACAGGGGTATTACTATC
1 ATTTTACCCTACAGGGGCATTACGGTC
* * * *
24964976 ATTTTGCCTTACAGGGGTATTATGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
* *
24965003 ATTTTACCTTACAGGGGCATTACAGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
* *
24965030 ATTTTACCATACAGGGGCATTACGATC
1 ATTTTACCCTACAGGGGCATTACGGTC
24965057 ATTTTACCCTACAGGGGCATTACGGGTC
1 ATTTTACCCTACAGGGGCATTAC-GGTC
*
24965085 ATTTTATCCTACAGGGGCATTACGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
* **
24965112 ATTTTACCATTGAGGGGCATTACGACATCACGGTC
1 ATTTTACCCTACAGGGGCA-T------T-ACGGTC
* * *
24965147 ATTTTACCCTACAGTGGTATTATGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
* * *
24965174 ATTTTACGCTACAGGGGAATTACGATC
1 ATTTTACCCTACAGGGGCATTACGGTC
*
24965201 ATTTTACCCTACAGGGGCATTACGATC
1 ATTTTACCCTACAGGGGCATTACGGTC
* *
24965228 ATTTTACCCTATAGGGGTATTACGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
24965255 ATTTTACCCTACA
1 ATTTTACCCTACA
24965268 CAGCTCAGAT
Statistics
Matches: 547, Mismatches: 85, Indels: 20
0.84 0.13 0.03
Matches are distributed among these distances:
26 24 0.04
27 474 0.87
28 27 0.05
34 2 0.00
35 20 0.04
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.33
Consensus pattern (27 bp):
ATTTTACCCTACAGGGGCATTACGGTC
Found at i:24965190 original size:62 final size:62
Alignment explanation
Indices: 24965081--24965251 Score: 171
Period size: 62 Copynumber: 2.9 Consensus size: 62
24965071 GGGCATTACG
* ** *
24965081 GGTCATTTTATCCTACAGGGGCATTACGGTCATTTTACCATTGAGGGGCATTACGACATCAC
1 GGTCATTTTACCCTACAGGGGCATTACGGTCATTTTACCATACAGGGGAATTACGACATCAC
* * *
24965143 GGTCATTTTACCCTACAGTGGTATTATGGTCATTTTACGC-TACAGGGGAATTACG-----A-
1 GGTCATTTTACCCTACAGGGGCATTACGGTCATTTTAC-CATACAGGGGAATTACGACATCAC
* * * *
24965199 --TCATTTTACCCTACAGGGGCATTACGATCATTTTACCCTATAGGGGTATTACG
1 GGTCATTTTACCCTACAGGGGCATTACGGTCATTTTACCATACAGGGGAATTACG
24965252 GTCATTTTAC
Statistics
Matches: 94, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
53 1 0.01
54 45 0.48
57 1 0.01
62 46 0.49
63 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.33
Consensus pattern (62 bp):
GGTCATTTTACCCTACAGGGGCATTACGGTCATTTTACCATACAGGGGAATTACGACATCAC
Found at i:24965199 original size:144 final size:143
Alignment explanation
Indices: 24964999--24965262 Score: 413
Period size: 144 Copynumber: 1.8 Consensus size: 143
24964989 GGGGTATTAT
* *
24964999 GGTCATTTTACCTTACAGGGGCATTACAGTCATTTTACCATACAGGGGCATTACGATCATTTTAC
1 GGTCATTTTACCCTACAGGGGCATTACAGTCATTTTACCATACAGGGGAATTACGATCATTTTAC
* *
24965064 CCTACAGGGGCATTACGGGTCATTTTATCCTACAGGGGCATTACGGTCATTTTACCATTGAGGGG
66 CCTACAGGGGCATTAC-GATCATTTTACCCTACAGGGGCATTACGGTCATTTTACCATTGAGGGG
24965129 CATTACGACATCAC
130 CATTACGACATCAC
* * **
24965143 GGTCATTTTACCCTACAGTGGTATTATGGTCATTTTACGC-TACAGGGGAATTACGATCATTTTA
1 GGTCATTTTACCCTACAGGGGCATTACAGTCATTTTAC-CATACAGGGGAATTACGATCATTTTA
* *
24965207 CCCTACAGGGGCATTACGATCATTTTACCCTATAGGGGTATTACGGTCATTTTACC
65 CCCTACAGGGGCATTACGATCATTTTACCCTACAGGGGCATTACGGTCATTTTACC
24965263 CTACACAGCT
Statistics
Matches: 109, Mismatches: 10, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
143 35 0.32
144 73 0.67
145 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.33
Consensus pattern (143 bp):
GGTCATTTTACCCTACAGGGGCATTACAGTCATTTTACCATACAGGGGAATTACGATCATTTTAC
CCTACAGGGGCATTACGATCATTTTACCCTACAGGGGCATTACGGTCATTTTACCATTGAGGGGC
ATTACGACATCAC
Found at i:24965207 original size:89 final size:90
Alignment explanation
Indices: 24965055--24965225 Score: 247
Period size: 89 Copynumber: 1.9 Consensus size: 90
24965045 GGCATTACGA
* *
24965055 TCATTTTACCCTACAGGGGCATTACGGGTCATTTTATCCTACAGGGGCATTACGGTCATTTTACC
1 TCATTTTACCCTACAGGGGCATTACGGGTCATTTTATCCTACAGGGGAATTACGATCATTTTACC
**
24965120 ATTGAGGGGCATTACGACATCACGG
66 ATACAGGGGCATTACGACATCACGG
* * *
24965145 TCATTTTACCCTACAGTGGTATTA-TGGTCATTTTA-CGCTACAGGGGAATTACGATCATTTTAC
1 TCATTTTACCCTACAGGGGCATTACGGGTCATTTTATC-CTACAGGGGAATTACGATCATTTTAC
*
24965208 CCTACAGGGGCATTACGA
65 CATACAGGGGCATTACGA
24965226 TCATTTTACC
Statistics
Matches: 72, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
88 1 0.01
89 49 0.68
90 22 0.31
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.32
Consensus pattern (90 bp):
TCATTTTACCCTACAGGGGCATTACGGGTCATTTTATCCTACAGGGGAATTACGATCATTTTACC
ATACAGGGGCATTACGACATCACGG
Found at i:24967287 original size:25 final size:26
Alignment explanation
Indices: 24967259--24967318 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 26
24967249 TAATTAATAT
*
24967259 AAAATATTAATAATTCAAT-AAATTG
1 AAAATATTAATAATTAAATAAAATTG
* *
24967284 AAAA-ATTAAATGATTAAATAAAATTT
1 AAAATATT-AATAATTAAATAAAATTG
24967310 AAAAT-TTAA
1 AAAATATTAA
24967319 GAGAAAAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
24 3 0.10
25 15 0.52
26 11 0.38
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (26 bp):
AAAATATTAATAATTAAATAAAATTG
Found at i:24967715 original size:22 final size:22
Alignment explanation
Indices: 24967688--24967732 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
24967678 TCAAGTGATG
24967688 TTGCGGCTAAGAAGTTGAAGGC
1 TTGCGGCTAAGAAGTTGAAGGC
* * *
24967710 TTGCGGCTAGGGAGTTGAGGGC
1 TTGCGGCTAAGAAGTTGAAGGC
24967732 T
1 T
24967733 ATGGCACTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.20, C:0.13, G:0.42, T:0.24
Consensus pattern (22 bp):
TTGCGGCTAAGAAGTTGAAGGC
Found at i:24977005 original size:56 final size:56
Alignment explanation
Indices: 24976915--24977137 Score: 279
Period size: 56 Copynumber: 4.0 Consensus size: 56
24976905 ACCATGGCAT
** *
24976915 CGATATATGTGTGTGAGTAAGACCACGTTGAATACGTTGGCATCGATATGTGATTC
1 CGATATATGTGTACGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
* * *
24976971 CAATATATGTGTACGAGTAAGACTACGTTTAATACATTGGCATCGATATGTGATTC
1 CGATATATGTGTACGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
* * * *
24977027 CGATATATGTGTACAAGTAAGACGACGTTTAATATGTTGGCATTGATATGTGATTC
1 CGATATATGTGTACGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
* * ***
24977083 CGTTATATGTGTGCGAGTAAGACC-CTGTTTAGGCCAG-TGGCATCGATATGTGATT
1 CGATATATGTGTACGAGTAAGACCAC-GTTTAATAC-GTTGGCATCGATATGTGATT
24977138 ACATGTAAGA
Statistics
Matches: 144, Mismatches: 21, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
55 1 0.01
56 142 0.99
57 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.34
Consensus pattern (56 bp):
CGATATATGTGTACGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
Found at i:24978862 original size:12 final size:12
Alignment explanation
Indices: 24978843--24978872 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
24978833 TGAGGGACTA
24978843 GAGGAGAGATTT
1 GAGGAGAGATTT
*
24978855 GGGGAGAGATTT
1 GAGGAGAGATTT
24978867 GAGGAG
1 GAGGAG
24978873 TGGATCAAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.50, T:0.20
Consensus pattern (12 bp):
GAGGAGAGATTT
Found at i:24980783 original size:19 final size:20
Alignment explanation
Indices: 24980759--24980796 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
24980749 GGTACCACCA
24980759 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
24980778 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
24980797 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:24981133 original size:93 final size:93
Alignment explanation
Indices: 24981026--24981196 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
24981016 GCCCCTAAGT
* *
24981026 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
24981091 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
24981119 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
24981184 CGAGTTCGGATGC
66 CGAGTTCGGATGC
24981197 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:24981193 original size:46 final size:46
Alignment explanation
Indices: 24981021--24981193 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
24981011 AACCCGCCCC
* * * *
24981021 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* *
24981067 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
24981115 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
24981160 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
24981194 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:24988326 original size:19 final size:20
Alignment explanation
Indices: 24988302--24988339 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
24988292 GGTACCACCA
24988302 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
24988321 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
24988340 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:24988684 original size:93 final size:93
Alignment explanation
Indices: 24988569--24988739 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
24988559 GCTTCTAAGT
* * *
24988569 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACACAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
24988634 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
24988662 GAACTCGGACACAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACACAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
24988727 CGAGTTCGGATGC
66 CGAGTTCGGATGC
24988740 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACACAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:24988736 original size:46 final size:46
Alignment explanation
Indices: 24988564--24988736 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
24988554 AACCCGCTTC
* * * *
24988564 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* *
24988610 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* * *
24988658 TCA-CGAACTCGGACACAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
24988703 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
24988737 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:24989192 original size:30 final size:30
Alignment explanation
Indices: 24989158--24989217 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
24989148 ATTTAATACG
24989158 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
24989188 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
24989218 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:24990570 original size:34 final size:34
Alignment explanation
Indices: 24990523--24990595 Score: 103
Period size: 34 Copynumber: 2.1 Consensus size: 34
24990513 GCATTTCTGT
*
24990523 TACTGATAGTGTAACGGGCTAAGG-CCTATACTGA
1 TACTGATACTGTAACGGGCTAAGGCCCTA-ACTGA
* *
24990557 TACTGATACTGTAATGGGCTATGGCCCTAACTGA
1 TACTGATACTGTAACGGGCTAAGGCCCTAACTGA
24990591 TACTG
1 TACTG
24990596 GACTATCACT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
34 31 0.89
35 4 0.11
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (34 bp):
TACTGATACTGTAACGGGCTAAGGCCCTAACTGA
Found at i:24995165 original size:12 final size:12
Alignment explanation
Indices: 24995148--24995177 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
24995138 TTTCAACCAT
*
24995148 TTCAATTCTCAA
1 TTCAATACTCAA
24995160 TTCAATACTCAA
1 TTCAATACTCAA
24995172 TTCAAT
1 TTCAAT
24995178 GCCATTTACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.37, C:0.23, G:0.00, T:0.40
Consensus pattern (12 bp):
TTCAATACTCAA
Found at i:24997251 original size:23 final size:23
Alignment explanation
Indices: 24997225--24997270 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
24997215 TACAAGTTCT
*
24997225 ACTC-ATCCAGCCTCTACACTCCA
1 ACTCTATCCAACC-CTACACTCCA
*
24997248 ACTCTGTCCAACCCTACACTCCA
1 ACTCTATCCAACCCTACACTCCA
24997271 TATGGGGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.26, C:0.48, G:0.04, T:0.22
Consensus pattern (23 bp):
ACTCTATCCAACCCTACACTCCA
Found at i:24997804 original size:13 final size:13
Alignment explanation
Indices: 24997786--24997816 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
24997776 CACATGTCCG
24997786 TGTGGTTTACCCA
1 TGTGGTTTACCCA
*
24997799 TGTGGTTTACCCG
1 TGTGGTTTACCCA
24997812 TGTGG
1 TGTGG
24997817 GGCCCACAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.10, C:0.19, G:0.32, T:0.39
Consensus pattern (13 bp):
TGTGGTTTACCCA
Found at i:25001127 original size:27 final size:28
Alignment explanation
Indices: 25001097--25001150 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 28
25001087 ACATAGGGGC
25001097 AAAATAGTCATCTTACCATATA-AGGGA
1 AAAATAGTCATCTTACCATATATAGGGA
* *
25001124 AAAATAGTCATTTTATCATATATAGGG
1 AAAATAGTCATCTTACCATATATAGGG
25001151 GGTCTAGGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 20 0.83
28 4 0.17
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.31
Consensus pattern (28 bp):
AAAATAGTCATCTTACCATATATAGGGA
Found at i:25012052 original size:25 final size:28
Alignment explanation
Indices: 25012024--25012118 Score: 92
Period size: 27 Copynumber: 3.5 Consensus size: 28
25012014 ATAGTAAGTC
*
25012024 CGCACACTTAGTG-T-TAT-ATAAAACT
1 CGCACACTTAGTGCTACATAATAAAACT
*
25012049 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATAAAACT
* * *
25012077 -GCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCTA--CATAATAAAACT
25012105 CGCACACTTAGTGC
1 CGCACACTTAGTGC
25012119 CAATCTCATG
Statistics
Matches: 59, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
25 13 0.22
26 1 0.02
27 17 0.29
28 13 0.22
29 15 0.25
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATAAAACT
Found at i:25020104 original size:29 final size:29
Alignment explanation
Indices: 25020045--25020202 Score: 230
Period size: 29 Copynumber: 5.5 Consensus size: 29
25020035 ATAGTAAGTC
* *
25020045 CGCACACTTAGTG-TTATATAATAAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
25020073 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
25020102 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
25020131 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
* * * * *
25020160 TGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCT-TACATAATCAAACT
25020189 CGCACACTTAGTGC
1 CGCACACTTAGTGC
25020203 CAATCTCATG
Statistics
Matches: 120, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
28 13 0.11
29 104 0.87
30 3 0.03
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:25035852 original size:29 final size:29
Alignment explanation
Indices: 25035807--25035907 Score: 105
Period size: 29 Copynumber: 3.5 Consensus size: 29
25035797 TCATTTATAT
* * *
25035807 GGCCCTATTCACGTTCATATGGACCATCA
1 GGCCCAATTCACATTCATATGGCCCATCA
*
25035836 GGCCCAATTCACATTCATATGGCCCATTA
1 GGCCCAATTCACATTCATATGGCCCATCA
* * * *
25035865 GGCCC-AGTCTCATTTATATGGCCCATCT
1 GGCCCAATTCACATTCATATGGCCCATCA
* *
25035893 GTCCCAAATCACATT
1 GGCCCAATTCACATT
25035908 ACATTCATGC
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 22 0.37
29 37 0.63
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.29
Consensus pattern (29 bp):
GGCCCAATTCACATTCATATGGCCCATCA
Found at i:25038353 original size:43 final size:42
Alignment explanation
Indices: 25038294--25038460 Score: 160
Period size: 43 Copynumber: 3.9 Consensus size: 42
25038284 GATTACCGAG
* *
25038294 ATGTGTTTACATGTAAGACCATGTTTGGGACATTGGCAT-AGT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCA-T
* * * *
25038336 ATCGTGATTACGTGTAAGACCTTGTCTAGGACATTCAG-ATCATT
1 AT-GTGATTACATGTAAGACCATGTCTGGGACATT-GGCATCA-T
* * *
25038380 ATATGATTTCATGTAAGACCATATCTGGGACATTGGCATCCAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT-CAT
* * *
25038423 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT
25038461 TGTATGAGCT
Statistics
Matches: 102, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
42 9 0.09
43 86 0.84
44 7 0.07
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (42 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCAT
Found at i:25039223 original size:23 final size:22
Alignment explanation
Indices: 25039197--25039246 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 22
25039187 GTTATGTAAG
*
25039197 TTTGATGAT-TTTTGGCATATTGA
1 TTTGAT-ATGTTTTGGC-TATGGA
*
25039220 TTTGGTATGTTTTGGCTATGGA
1 TTTGATATGTTTTGGCTATGGA
25039242 TTTGA
1 TTTGA
25039247 GTAGTTAAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
22 11 0.48
23 12 0.52
ACGTcount: A:0.18, C:0.04, G:0.26, T:0.52
Consensus pattern (22 bp):
TTTGATATGTTTTGGCTATGGA
Found at i:25040521 original size:18 final size:18
Alignment explanation
Indices: 25040487--25040523 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
25040477 GTAGTAGCAA
**
25040487 TAAACAGTGCAGTAATAG
1 TAAACAGTGCAAAAATAG
25040505 TAAACAGTGCAAAAATAG
1 TAAACAGTGCAAAAATAG
25040523 T
1 T
25040524 GAATTGTAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.49, C:0.11, G:0.19, T:0.22
Consensus pattern (18 bp):
TAAACAGTGCAAAAATAG
Found at i:25040896 original size:27 final size:27
Alignment explanation
Indices: 25040852--25041064 Score: 198
Period size: 27 Copynumber: 8.0 Consensus size: 27
25040842 ACATAAGAGT
* * * *
25040852 AAAACAGTCATCTTACCATAAAAGGGC
1 AAAACAATCATTTTACCACAAAGGGGC
* **
25040879 AAAACAATCATTTCACCACATAA-GGTA
1 AAAACAATCATTTTACCACA-AAGGGGC
* * *
25040906 AAAATAATCATTTTACCTCATAGGGGC
1 AAAACAATCATTTTACCACAAAGGGGC
*
25040933 AAAACAATCATTTAACCAC-AAGGGGC
1 AAAACAATCATTTTACCACAAAGGGGC
* * *
25040959 AAAATAGTCATTTTACCACACAGGGGC
1 AAAACAATCATTTTACCACAAAGGGGC
* *
25040986 AATACAATCATTTTACCAC-AATGGGC
1 AAAACAATCATTTTACCACAAAGGGGC
* * * *
25041012 AAAATAGTTATTTTACCACACAGGGGC
1 AAAACAATCATTTTACCACAAAGGGGC
* *
25041039 AATAGAATCATTTTACCACAAAGGGG
1 AAAACAATCATTTTACCACAAAGGGG
25041065 GTCTATGTAC
Statistics
Matches: 146, Mismatches: 36, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
26 43 0.29
27 101 0.69
28 2 0.01
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.23
Consensus pattern (27 bp):
AAAACAATCATTTTACCACAAAGGGGC
Found at i:25040970 original size:80 final size:79
Alignment explanation
Indices: 25040875--25041063 Score: 200
Period size: 80 Copynumber: 2.4 Consensus size: 79
25040865 TACCATAAAA
* * * *
25040875 GGGCAAAACAATCATTTCACCACATAAGGTAAAAATAATCATTTTACCTCATAGGGGCAAAACAA
1 GGGCAAAACAATCATTTTACCACA-AAGGGAAAAACAATCATTTTACCACA-AGGGGCAAAACAA
25040940 TCATTTAACCACA-AG
64 TCATTTAACCACACAG
* * * * * * * *
25040955 GGGCAAAATAGTCATTTTACCACACAGGGGCAATACAATCATTTTACCACAATGGGCAAAATAGT
1 GGGCAAAACAATCATTTTACCACA-AAGGGAAAAACAATCATTTTACCACAAGGGGCAAAACAAT
* *
25041020 TATTTTACCACACAG
65 CATTTAACCACACAG
* *
25041035 GGGCAATAGAATCATTTTACCACAAAGGG
1 GGGCAAAACAATCATTTTACCACAAAGGG
25041064 GGTCTATGTA
Statistics
Matches: 89, Mismatches: 19, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
79 25 0.28
80 64 0.72
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.23
Consensus pattern (79 bp):
GGGCAAAACAATCATTTTACCACAAAGGGAAAAACAATCATTTTACCACAAGGGGCAAAACAATC
ATTTAACCACACAG
Found at i:25040986 original size:53 final size:53
Alignment explanation
Indices: 25040852--25041064 Score: 246
Period size: 53 Copynumber: 4.0 Consensus size: 53
25040842 ACATAAGAGT
* * * * * * * **
25040852 AAAACAGTCATCTTACCATAAAAGGGCAAAACAATCATTTCACCACATAAGGTA
1 AAAATAGTCATTTTACCACACAGGGGCAAAACAATCATTTTACCACA-AGGGGC
* * * *
25040906 AAAATAATCATTTTACCTCATAGGGGCAAAACAATCATTTAACCACAAGGGGC
1 AAAATAGTCATTTTACCACACAGGGGCAAAACAATCATTTTACCACAAGGGGC
* *
25040959 AAAATAGTCATTTTACCACACAGGGGCAATACAATCATTTTACCACAATGGGC
1 AAAATAGTCATTTTACCACACAGGGGCAAAACAATCATTTTACCACAAGGGGC
* * *
25041012 AAAATAGTTATTTTACCACACAGGGGCAATAGAATCATTTTACCACAAAGGGG
1 AAAATAGTCATTTTACCACACAGGGGCAAAACAATCATTTTACCAC-AAGGGG
25041065 GTCTATGTAC
Statistics
Matches: 138, Mismatches: 20, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
53 94 0.68
54 44 0.32
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.23
Consensus pattern (53 bp):
AAAATAGTCATTTTACCACACAGGGGCAAAACAATCATTTTACCACAAGGGGC
Found at i:25042430 original size:20 final size:20
Alignment explanation
Indices: 25042407--25042454 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
25042397 AGCTTCGTCT
25042407 AGCTCAACTCAGCTCATTTG
1 AGCTCAACTCAGCTCATTTG
*** *
25042427 AGCTCGTTTCAGCTCGTTTG
1 AGCTCAACTCAGCTCATTTG
25042447 AGCTCAAC
1 AGCTCAAC
25042455 CGAGCTTACT
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.21, C:0.29, G:0.19, T:0.31
Consensus pattern (20 bp):
AGCTCAACTCAGCTCATTTG
Found at i:25044953 original size:42 final size:42
Alignment explanation
Indices: 25044891--25044979 Score: 142
Period size: 42 Copynumber: 2.1 Consensus size: 42
25044881 ATATTATGAG
* * * *
25044891 AGAAAATGAGAGGATTTTGAATGAAATTGAGAGAAGAAACAA
1 AGAAAATGAGAGAATCTTGAATGAAATCGAGAAAAGAAACAA
25044933 AGAAAATGAGAGAATCTTGAATGAAATCGAGAAAAGAAACAA
1 AGAAAATGAGAGAATCTTGAATGAAATCGAGAAAAGAAACAA
25044975 AGAAA
1 AGAAA
25044980 TGAAAAAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.56, C:0.04, G:0.24, T:0.16
Consensus pattern (42 bp):
AGAAAATGAGAGAATCTTGAATGAAATCGAGAAAAGAAACAA
Found at i:25044958 original size:21 final size:21
Alignment explanation
Indices: 25044892--25044958 Score: 53
Period size: 21 Copynumber: 3.2 Consensus size: 21
25044882 TATTATGAGA
* *
25044892 GAAAATGAGAGGATTTTGAAT
1 GAAAATGAGAGAATATTGAAT
* * *** *
25044913 GAAATTGAGAGAAGAAACAAA
1 GAAAATGAGAGAATATTGAAT
*
25044934 GAAAATGAGAGAATCTTGAAT
1 GAAAATGAGAGAATATTGAAT
25044955 GAAA
1 GAAA
25044959 TCGAGAAAAG
Statistics
Matches: 31, Mismatches: 15, Indels: 0
0.67 0.33 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.52, C:0.03, G:0.25, T:0.19
Consensus pattern (21 bp):
GAAAATGAGAGAATATTGAAT
Found at i:25045048 original size:30 final size:30
Alignment explanation
Indices: 25044986--25045052 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
25044976 GAAATGAAAA
* * ** *
25044986 AAAAAGAAAATGAGATTGAGATTGAGAGTG
1 AAAAAGAAAATGAGATTCAAAAAGAGAATG
25045016 AAAAAGAAAATGAGATTCAAAAAGAGAATG
1 AAAAAGAAAATGAGATTCAAAAAGAGAATG
25045046 AAAAAGA
1 AAAAAGA
25045053 GTTTGAGAGA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.60, C:0.01, G:0.24, T:0.15
Consensus pattern (30 bp):
AAAAAGAAAATGAGATTCAAAAAGAGAATG
Found at i:25045100 original size:18 final size:19
Alignment explanation
Indices: 25045064--25045102 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
25045054 TTTGAGAGAG
*
25045064 AAAAAGAATGTGAACAAGA
1 AAAAAGAATGTGAAAAAGA
*
25045083 AAAAAGAGTG-GAAAAAGA
1 AAAAAGAATGTGAAAAAGA
25045101 AA
1 AA
25045103 TTGAGATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.67, C:0.03, G:0.23, T:0.08
Consensus pattern (19 bp):
AAAAAGAATGTGAAAAAGA
Found at i:25048762 original size:48 final size:48
Alignment explanation
Indices: 25048690--25049267 Score: 1039
Period size: 48 Copynumber: 12.0 Consensus size: 48
25048680 AGATAAATAT
* *
25048690 ATATGTATATGTGGTAAAGTCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
25048738 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
25048786 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
25048834 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
25048882 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
25048930 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
25048978 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
25049026 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
25049074 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
25049122 ATATGTGTATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
25049170 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
25049218 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
25049266 AT
1 AT
25049268 GTGTGTATAT
Statistics
Matches: 515, Mismatches: 15, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 515 1.00
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.30
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:25048955 original size:28 final size:28
Alignment explanation
Indices: 25048923--25049003 Score: 70
Period size: 28 Copynumber: 3.2 Consensus size: 28
25048913 TGTGAAATAT
25048923 GAATGAGATATGTATATGTGGTAAAGCC
1 GAATGAGATATGTATATGTGGTAAAGCC
* ***
25048951 GAATG-GCTA-G----TGT-G-AAATAT
1 GAATGAGATATGTATATGTGGTAAAGCC
25048971 GAATGAGATATGTATATGTGGTAAAGCC
1 GAATGAGATATGTATATGTGGTAAAGCC
25048999 GAATG
1 GAATG
25049004 GCTAGTGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 16
0.61 0.13 0.26
Matches are distributed among these distances:
20 8 0.22
21 4 0.11
22 4 0.11
26 4 0.11
27 4 0.11
28 13 0.35
ACGTcount: A:0.36, C:0.06, G:0.30, T:0.28
Consensus pattern (28 bp):
GAATGAGATATGTATATGTGGTAAAGCC
Found at i:25049458 original size:37 final size:37
Alignment explanation
Indices: 25049408--25049510 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
25049398 GGAAATATAT
*
25049408 TCCGGGTAAGACCCGATGACTACATGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
25049445 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
25049482 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
25049511 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:25050547 original size:20 final size:20
Alignment explanation
Indices: 25050524--25050571 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
25050514 AGCTCCGTCC
25050524 AGCTCAACTCAGCTCATTTG
1 AGCTCAACTCAGCTCATTTG
*** *
25050544 AGCTCGTTTCAGCTCGTTTG
1 AGCTCAACTCAGCTCATTTG
25050564 AGCTCAAC
1 AGCTCAAC
25050572 CGAGCTTACT
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.21, C:0.29, G:0.19, T:0.31
Consensus pattern (20 bp):
AGCTCAACTCAGCTCATTTG
Found at i:25059825 original size:27 final size:27
Alignment explanation
Indices: 25059795--25059972 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
25059785 ATATTGAGCC
* *
25059795 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
25059822 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
25059849 CGCACACTTAGTGCTACATAGTCAACCT
1 CGCACACTTAGTGCTACATAATCAA-CT
** ** *
25059877 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
25059904 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
25059931 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
25059958 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
25059973 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 104 0.81
28 25 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:25059934 original size:82 final size:81
Alignment explanation
Indices: 25059816--25059971 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 81
25059806 TGCTATATAA
* *
25059816 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTC-AACCTCGC
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCGAA--TCGC
25059880 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * **
25059898 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
25059962 CACTTAGTGC
65 CACTTAGTGC
25059972 TGTACAATTT
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
81 16 0.24
82 48 0.73
83 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:25069733 original size:27 final size:27
Alignment explanation
Indices: 25069703--25069877 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
25069693 ATATTGAGCC
* *
25069703 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
25069730 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
25069757 CGCACACTTAGTGCTACATAGT--ACT
1 CGCACACTTAGTGCTACATAATCAACT
** ** *
25069782 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
25069809 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
25069836 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
25069863 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
25069878 GTACAATTTA
Statistics
Matches: 125, Mismatches: 18, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
25 21 0.17
27 102 0.82
28 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:25069839 original size:79 final size:80
Alignment explanation
Indices: 25069724--25069876 Score: 211
Period size: 79 Copynumber: 1.9 Consensus size: 80
25069714 TGCTATATAA
* * *
25069724 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGT-ACTCGCACA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAATCGCACA
25069788 CTTAGTGCCGCATGG
66 CTTAGTGCCGCATGG
* * **
25069803 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTC-AATCGCA
25069867 CACTTAGTGC
64 CACTTAGTGC
25069877 TGTACAATTT
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
78 1 0.02
79 47 0.73
81 16 0.25
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.27
Consensus pattern (80 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAATCGCACA
CTTAGTGCCGCATGG
Found at i:25075817 original size:10 final size:10
Alignment explanation
Indices: 25075793--25075822 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
25075783 GATGGTTTAA
25075793 ATATATGTG-
1 ATATATGTGT
25075802 ATATATGTGT
1 ATATATGTGT
25075812 ATATATGTGT
1 ATATATGTGT
25075822 A
1 A
25075823 ATAAATCAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (10 bp):
ATATATGTGT
Found at i:25078513 original size:51 final size:50
Alignment explanation
Indices: 25078434--25078587 Score: 136
Period size: 50 Copynumber: 3.1 Consensus size: 50
25078424 ACGTTTCAAG
***
25078434 CATGAAGCATGAATGATTTCAATGCATAGAGATGTTCTTTATCA-TTCAAATA
1 CATG-AGCATGAATGATTTCAATGCATAG-GAACAT-TTTATCATTTCAAATA
* * * *
25078486 CATGAGCATGGATGGTTTCAACT-CATAGGAACATTTTCTCATTTCAAATG
1 CATGAGCATGAATGATTTCAA-TGCATAGGAACATTTTATCATTTCAAATA
* * * *
25078536 CATGAGCATGAATGATTTCAAAG-AAAGGAGACATTTTCTCA-TCCAAATA
1 CATGAGCATGAATGATTTCAATGCATAGGA-ACATTTTATCATTTCAAATA
25078585 CAT
1 CAT
25078588 TTGCATGGTT
Statistics
Matches: 85, Mismatches: 13, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
49 20 0.24
50 40 0.47
51 20 0.24
52 5 0.06
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (50 bp):
CATGAGCATGAATGATTTCAATGCATAGGAACATTTTATCATTTCAAATA
Found at i:25087747 original size:25 final size:25
Alignment explanation
Indices: 25087719--25087803 Score: 111
Period size: 26 Copynumber: 3.4 Consensus size: 25
25087709 CTAGAGGCCT
*
25087719 AGCCTCTTTTAAT-AACTGGGGCAAA
1 AGCC-CTTTTGATAAACTGGGGCAAA
25087744 AGCCCTTTTTGATAAACTGGGGCAAA
1 AGCCC-TTTTGATAAACTGGGGCAAA
*
25087770 AGCCCTTTTCGGTAAACTGGGGC-AA
1 AGCCCTTTT-GATAAACTGGGGCAAA
25087795 AGCCCTTTT
1 AGCCCTTTT
25087804 CTGTAACTAG
Statistics
Matches: 55, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
24 1 0.02
25 25 0.45
26 29 0.53
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Consensus pattern (25 bp):
AGCCCTTTTGATAAACTGGGGCAAA
Found at i:25087804 original size:25 final size:26
Alignment explanation
Indices: 25087732--25087827 Score: 126
Period size: 26 Copynumber: 3.8 Consensus size: 26
25087722 CTCTTTTAAT
* *
25087732 AACTGGGGCAAAAGCCCTTTTTGATA
1 AACTGGGGCAAAAGCCCTTTTCGGTA
25087758 AACTGGGGCAAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAAGCCCTTTTCGGTA
*
25087784 AACTGGGGC-AAAGCCCTTTTCTGT-
1 AACTGGGGCAAAAGCCCTTTTCGGTA
* *
25087808 AACTAGGGC-ATAGCCCTTTT
1 AACTGGGGCAAAAGCCCTTTT
25087828 GCACTTCCTC
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
24 18 0.28
25 14 0.22
26 33 0.51
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (26 bp):
AACTGGGGCAAAAGCCCTTTTCGGTA
Found at i:25094363 original size:34 final size:34
Alignment explanation
Indices: 25094325--25094397 Score: 101
Period size: 34 Copynumber: 2.1 Consensus size: 34
25094315 TTAGCCCCTC
*
25094325 TTTCAGTAGCAGTAGCAGTCTGGGCCTGAGCCCA
1 TTTCAGTAACAGTAGCAGTCTGGGCCTGAGCCCA
* * * *
25094359 TTTCAGTAATAGTGGTAGTCTGGGCCTTAGCCCA
1 TTTCAGTAACAGTAGCAGTCTGGGCCTGAGCCCA
25094393 TTTCA
1 TTTCA
25094398 CTATAGTATG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (34 bp):
TTTCAGTAACAGTAGCAGTCTGGGCCTGAGCCCA
Found at i:25097168 original size:21 final size:21
Alignment explanation
Indices: 25097126--25097168 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
25097116 TATCGTGGTA
*
25097126 GTGGTAGTAAAAGAGGTCATG
1 GTGGTAGTAAAAGAGGGCATG
25097147 GTGGTAG-AAAAGAGGGCGATG
1 GTGGTAGTAAAAGAGGGC-ATG
25097168 G
1 G
25097169 GACTAGATCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.33, C:0.05, G:0.44, T:0.19
Consensus pattern (21 bp):
GTGGTAGTAAAAGAGGGCATG
Found at i:25098906 original size:40 final size:40
Alignment explanation
Indices: 25098832--25099053 Score: 315
Period size: 40 Copynumber: 5.6 Consensus size: 40
25098822 AACCCAAGTA
* *
25098832 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* * *
25098871 CCTTCGAGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
25098911 CCTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
*
25098951 CCTTTGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* * *
25098991 CCTTCGGGACTTAGCCCGCATATAGTTACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
25099031 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
25099054 CATTCGAATA
Statistics
Matches: 163, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
39 14 0.09
40 143 0.88
41 6 0.04
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:25098964 original size:80 final size:80
Alignment explanation
Indices: 25098832--25099053 Score: 356
Period size: 80 Copynumber: 2.8 Consensus size: 80
25098822 AACCCAAGTA
* * *
25098832 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGAGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
25098896 TCAATAGCACAAAAG
66 TCAATAGCACAAAAG
*
25098911 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTTGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
25098976 TCAATAGCACAAATG
66 TCAATAGCACAAAAG
* ** *
25098991 CCTTCGGGACTTAGCCCGCATATAGTTACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
25099054 CATTCGAATA
Statistics
Matches: 132, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
79 13 0.10
80 119 0.90
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCAATAGCACAAAAG
Found at i:25102976 original size:43 final size:43
Alignment explanation
Indices: 25102926--25103048 Score: 149
Period size: 43 Copynumber: 2.9 Consensus size: 43
25102916 ATGATTTGTG
*
25102926 TAAGACCACATCTGGGAAGTTGGCATCGATTTGAGATATCGTC
1 TAAGACCACGTCTGGGAAGTTGGCATCGATTTGAGATATCGTC
* * * * *
25102969 TAAGACCACGTATGGGACGTTGGCATTGATTTCAGATATCGTG
1 TAAGACCACGTCTGGGAAGTTGGCATCGATTTGAGATATCGTC
* * *
25103012 TAAGACCACGTCTGGCACA-TTGGCATCAATTAGAGAT
1 TAAGACCACGTCTGGGA-AGTTGGCATCGATTTGAGAT
25103049 TTTGTTGAAG
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
43 66 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (43 bp):
TAAGACCACGTCTGGGAAGTTGGCATCGATTTGAGATATCGTC
Found at i:25114684 original size:64 final size:67
Alignment explanation
Indices: 25114589--25114738 Score: 182
Period size: 64 Copynumber: 2.3 Consensus size: 67
25114579 CATATAGTTC
* * * * *
25114589 AGCTTTCTTGTACACATGGTGAACACTTAGTACCACGCATGCGACCTAGCTACAT-AT-A-TCCT
1 AGCTCTCTTGTACACATGGTGAACACATAGTACCACCCACGCAACCTAGCTACATCATAAGTCCT
25114651 GT
66 GT
* *
25114653 AGCTCTCTTGT-CTACATGGTGTACACATAGTATCACCCACGCAACCTAGCTACATCATAATGTC
1 AGCTCTCTTGTAC-ACATGGTGAACACATAGTACCACCCACGCAACCTAGCTACATCATAA-GTC
*
25114717 TTGT
64 CTGT
25114721 AGCTCTCTTGTACACATG
1 AGCTCTCTTGTACACATG
25114739 ATGTGCACTC
Statistics
Matches: 72, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
63 1 0.01
64 46 0.64
65 2 0.03
66 1 0.01
68 21 0.29
69 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (67 bp):
AGCTCTCTTGTACACATGGTGAACACATAGTACCACCCACGCAACCTAGCTACATCATAAGTCCT
GT
Found at i:25115476 original size:30 final size:30
Alignment explanation
Indices: 25115442--25115502 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
25115432 TCCTTAACTC
25115442 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
25115472 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
25115502 A
1 A
25115503 GGCTTGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:25123190 original size:64 final size:64
Alignment explanation
Indices: 25123109--25123292 Score: 208
Period size: 67 Copynumber: 2.8 Consensus size: 64
25123099 AGACATTATG
* *
25123109 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
25123173 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
25123238 AA
63 AA
* * * * * *
25123240 AT-TGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGTATACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGC
25123293 CGAACTATAT
Statistics
Matches: 98, Mismatches: 19, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
63 20 0.20
64 21 0.21
65 8 0.08
66 17 0.17
67 32 0.33
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:25140223 original size:127 final size:127
Alignment explanation
Indices: 25139997--25140250 Score: 436
Period size: 127 Copynumber: 2.0 Consensus size: 127
25139987 TCATTAATAA
**
25139997 TGTAACATCCTGATTTTTGGATTTATTCGCGGTTTTCAATATTTTGTAAAGACTTTAAAATTTTG
1 TGTAACATCCTGATTTTCAGATTTATTCGCGGTTTTCAATATTTTGTAAAGACTTTAAAATTTTG
* * *
25140062 TATTTGGATGTGGAATTAATATTTTGAGTAGGTAAATGGGGTTATAGAGGGCCCATGTGTTG
66 TATTTGGATGTGAAATTAATATTTTGAGTAGGTAAATGGGCTTATAGAAGGCCCATGTGTTG
*
25140124 TGTAACATCCTGATTTTCAGATTTATTCGCGGTTTTCAATATTTTGTAAAGATTTTAAAATTTTG
1 TGTAACATCCTGATTTTCAGATTTATTCGCGGTTTTCAATATTTTGTAAAGACTTTAAAATTTTG
* *
25140189 TATTTGGATGTGAAATTTATCTTTTGAGTAGGTAAATGGGCTTATAGAAGGCCCATGTGTTG
66 TATTTGGATGTGAAATTAATATTTTGAGTAGGTAAATGGGCTTATAGAAGGCCCATGTGTTG
25140251 GCCAAAACCC
Statistics
Matches: 119, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
127 119 1.00
ACGTcount: A:0.26, C:0.09, G:0.22, T:0.43
Consensus pattern (127 bp):
TGTAACATCCTGATTTTCAGATTTATTCGCGGTTTTCAATATTTTGTAAAGACTTTAAAATTTTG
TATTTGGATGTGAAATTAATATTTTGAGTAGGTAAATGGGCTTATAGAAGGCCCATGTGTTG
Found at i:25148906 original size:27 final size:27
Alignment explanation
Indices: 25148875--25149052 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
25148865 TAAATTGTAC
25148875 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
25148902 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25148928 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
25148956 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
25148984 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25149011 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
25149038 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
25149053 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:25148989 original size:82 final size:81
Alignment explanation
Indices: 25148876--25149031 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
25148866 AAATTGTACA
* *
25148876 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
25148940 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
25148957 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
25149022 TGCGAGTTGA
65 TGCGAATTGA
25149032 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:25149043 original size:82 final size:81
Alignment explanation
Indices: 25148872--25149052 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
25148862 GATTAAATTG
* *
25148872 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
25148937 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
25148953 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
25149017 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
25149035 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
25149053 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:25151076 original size:19 final size:19
Alignment explanation
Indices: 25151048--25151085 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
25151038 ATGTGCTGCC
*
25151048 TTTGTGGCGTCTTTTCGTCT
1 TTTGTGGCGTATTTT-GTCT
25151068 TTTGT-GCGTATTTTGTCT
1 TTTGTGGCGTATTTTGTCT
25151086 CGTTCTGTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 8 0.47
20 5 0.29
ACGTcount: A:0.03, C:0.16, G:0.24, T:0.58
Consensus pattern (19 bp):
TTTGTGGCGTATTTTGTCT
Found at i:25167087 original size:132 final size:132
Alignment explanation
Indices: 25166898--25167187 Score: 404
Period size: 132 Copynumber: 2.2 Consensus size: 132
25166888 AAGATGGCGA
* * *
25166898 ATCTTATCTCCTTGAGGTAGTAG-GGAGCAGACTTTAGCCACCAGCCTTATCTCCCTGAGGTAGC
1 ATCTTATCTCCTTGAGATAGCAGTGGAGCAAACTTTAGCCACCAGCCTTATCTCCCTGAGGTAGC
** *
25166962 AAGGGAGCAGGCCAAAGATTGT-GTCCTATCTTCTTGAGGTAGCAAGGAAGCAGATTAAAAATTG
66 AAGGGAGCAGGCCAAAGATTGTAGTCCTATCTTCCCGAGGTAGC-AGGAAGCAGACTAAAAATTG
25167026 TAG
130 TAG
* * * * *
25167029 ATCTTATCTCCCTGAGATAGCAGTGGAGCAAATTTTAGCCACTAGCCTTATCTGCCTGAGGTAGT
1 ATCTTATCTCCTTGAGATAGCAGTGGAGCAAACTTTAGCCACCAGCCTTATCTCCCTGAGGTAGC
** * * * *
25167094 AAGGGAGCAGTTCAAAGATTGTAGTCTTATCTTCCCGAGGTATCAGGAAGCAGACTGAAGATTGT
66 AAGGGAGCAGGCCAAAGATTGTAGTCCTATCTTCCCGAGGTAGCAGGAAGCAGACTAAAAATTGT
25167159 AG
131 AG
25167161 ATCTTATCTCCTTGAGATAGCAGTGGA
1 ATCTTATCTCCTTGAGATAGCAGTGGA
25167188 ATAGATCAAT
Statistics
Matches: 139, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
131 20 0.14
132 102 0.73
133 17 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (132 bp):
ATCTTATCTCCTTGAGATAGCAGTGGAGCAAACTTTAGCCACCAGCCTTATCTCCCTGAGGTAGC
AAGGGAGCAGGCCAAAGATTGTAGTCCTATCTTCCCGAGGTAGCAGGAAGCAGACTAAAAATTGT
AG
Found at i:25167101 original size:176 final size:177
Alignment explanation
Indices: 25166766--25167103 Score: 421
Period size: 176 Copynumber: 1.9 Consensus size: 177
25166756 GATGGCGAAT
* * * * ** *
25166766 CTTATCTTCCTAAGGTAGCAATGGAGTAGGCCGAAGATTGTAGTTTTATATTCCTGATGTAGCAA
1 CTTATCTCCCTAAGGTAGCAAGGGAGCAGGCCAAAGATTGTAGTCCTATATTCCTGAGGTAGCAA
* * * ***
25166831 CGAAGTAGACTAAAGATTGTAGATCTTATCTCCCTGAGATAGCAGTGGAGCAGATCGAAGATGGC
66 CGAAGCAGACTAAAAATTGTAGATCTTATCTCCCTGAGATAGCAGTGGAGCAAATCGAAGACCAC
*
25166896 GAATCTTATCTCCTTGAGGTAGTAGGGAGCAGACTTTAGCCACCAGC
131 GAACCTTATCTCCTTGAGGTAGTAGGGAGCAGACTTTAGCCACCAGC
* * *
25166943 CTTATCTCCCTGAGGTAGCAAGGGAGCAGGCCAAAGATTGT-GTCCTATCTTCTTGAGGTAGCAA
1 CTTATCTCCCTAAGGTAGCAAGGGAGCAGGCCAAAGATTGTAGTCCTATATTCCTGAGGTAGCAA
* * ***
25167007 GGAAGCAGATTAAAAATTGTAGATCTTATCTCCCTGAGATAGCAGTGGAGCAAATTTTAG-CCAC
66 CGAAGCAGACTAAAAATTGTAGATCTTATCTCCCTGAGATAGCAGTGGAGCAAATCGAAGACCAC
* *
25167071 TAGCCTTATCTGCC-TGAGGTAGTAAGGGAGCAG
131 GAACCTTATCT-CCTTGAGGTAGT-AGGGAGCAG
25167104 TTCAAAGATT
Statistics
Matches: 135, Mismatches: 24, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
175 18 0.13
176 81 0.60
177 36 0.27
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.27
Consensus pattern (177 bp):
CTTATCTCCCTAAGGTAGCAAGGGAGCAGGCCAAAGATTGTAGTCCTATATTCCTGAGGTAGCAA
CGAAGCAGACTAAAAATTGTAGATCTTATCTCCCTGAGATAGCAGTGGAGCAAATCGAAGACCAC
GAACCTTATCTCCTTGAGGTAGTAGGGAGCAGACTTTAGCCACCAGC
Found at i:25167123 original size:44 final size:44
Alignment explanation
Indices: 25166943--25167182 Score: 152
Period size: 43 Copynumber: 5.5 Consensus size: 44
25166933 AGCCACCAGC
**
25166943 CTTATCTCCCTGAGGTAGCAAGGGAGCAGGCCAAAGATTGT-GT
1 CTTATCTCCCTGAGGTAGCAAGGGAGCAGTTCAAAGATTGTAGT
* * * * *
25166986 CCTATCTTCTTGAGGTAGCAAGGAAGCAGATT-AAAAATTGTAGAT
1 CTTATCTCCCTGAGGTAGCAAGGGAGCAG-TTCAAAGATTGTAG-T
* * ** **** *
25167031 CTTATCTCCCTGAGATAGC-AGTGGAGCAAATT-TTAGCCACTAGC
1 CTTATCTCCCTGAGGTAGCAAG-GGAGC-AGTTCAAAGATTGTAGT
* *
25167075 CTTATCTGCCTGAGGTAGTAAGGGAGCAGTTCAAAGATTGTAGT
1 CTTATCTCCCTGAGGTAGCAAGGGAGCAGTTCAAAGATTGTAGT
* * * *
25167119 CTTATCTTCCC-GAGGTATC-AGGAAGCAG-ACTGAAGATTGTAGAT
1 CTTATC-TCCCTGAGGTAGCAAGGGAGCAGTTC-AAAGATTGTAG-T
* *
25167163 CTTATCTCCTTGAGATAGCA
1 CTTATCTCCCTGAGGTAGCA
25167183 GTGGAATAGA
Statistics
Matches: 144, Mismatches: 41, Indels: 22
0.70 0.20 0.11
Matches are distributed among these distances:
42 1 0.01
43 57 0.40
44 54 0.38
45 31 0.22
46 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.28
Consensus pattern (44 bp):
CTTATCTCCCTGAGGTAGCAAGGGAGCAGTTCAAAGATTGTAGT
Found at i:25167393 original size:134 final size:134
Alignment explanation
Indices: 25167148--25167393 Score: 350
Period size: 134 Copynumber: 1.8 Consensus size: 134
25167138 AGGAAGCAGA
* * * *
25167148 CTGAAGATTGTAGATCTTATCTCCTTGAGATAGCAGTGGAATAGATCAATGATGACAAATCTTAT
1 CTGAAGATTGTAGATCTTATCTCCTTGAGATAGAAGTGGAACAGATCAAAGACGACAAATCTTAT
* * * *
25167213 CTTCTCGAGGCAGAAGGGGAGCAGATTTAAGCCACCAGTCTTATCTCTTTGAGGTAGCAAAGGAG
66 CTTCTCGAAGCAGAAGGGGAACAGATTTAAGCCACCAGCCTCATCTCTTTGAGGTAGCAAAGGAG
25167278 TAGG
131 TAGG
* *
25167282 CTGAAGATTGTAGATCTTATCTCTTTGAGATAGAAGTGGAGCAGATCAAAGACGACAAATCTTAT
1 CTGAAGATTGTAGATCTTATCTCCTTGAGATAGAAGTGGAACAGATCAAAGACGACAAATCTTAT
* * * *
25167347 CTTCTTGAAGTAGCAA-TGGAACAGATTTAGGCCACCAGCCTCATCTC
66 CTTCTCGAAGCAG-AAGGGGAACAGATTTAAGCCACCAGCCTCATCTC
25167394 CCTGAAGTAG
Statistics
Matches: 97, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
134 95 0.98
135 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (134 bp):
CTGAAGATTGTAGATCTTATCTCCTTGAGATAGAAGTGGAACAGATCAAAGACGACAAATCTTAT
CTTCTCGAAGCAGAAGGGGAACAGATTTAAGCCACCAGCCTCATCTCTTTGAGGTAGCAAAGGAG
TAGG
Found at i:25167421 original size:134 final size:133
Alignment explanation
Indices: 25167142--25167439 Score: 341
Period size: 134 Copynumber: 2.2 Consensus size: 133
25167132 GGTATCAGGA
* * * *
25167142 AGCAGACTGAAGATTGTAGATCTTATCTCCTTGAGATAGCAGTGGAATAGATCAATGATGACAAA
1 AGCAGACTGAAGATTGTAGATCTTATCTCCTTGAGATAGAAGTGGAACAGATCAAAGACGACAAA
* * * * ** *
25167207 TCTTATCTTCTCGAGGCAGAAGGGGAGCAGATTTAAGCCACCAGTCTTATCTCTTTGAGGTAGCA
66 TCTTATCTTCTCGAAGCAGAAGGGGAACAGATTTAAGCCACCAGCCTCATCTCCCTGAAGTAGC-
25167272 AAGG
130 AAGG
* * * *
25167276 AGTAGGCTGAAGATTGTAGATCTTATCTCTTTGAGATAGAAGTGGAGCAGATCAAAGACGACAAA
1 AGCAGACTGAAGATTGTAGATCTTATCTCCTTGAGATAGAAGTGGAACAGATCAAAGACGACAAA
* * * *
25167341 TCTTATCTTCTTGAAGTAGCAA-TGGAACAGATTTAGGCCACCAGCCTCATCTCCCTGAAGTAGC
66 TCTTATCTTCTCGAAGCAG-AAGGGGAACAGATTTAAGCCACCAGCCTCATCTCCCTGAAGTAGC
25167405 -AGTG
130 AAG-G
* *
25167409 AGGCAGATTGAAGATGGT-GAATCTTATCTCC
1 A-GCAGACTGAAGATTGTAG-ATCTTATCTCC
25167440 ATGTAGCAGC
Statistics
Matches: 136, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
132 2 0.01
133 3 0.02
134 129 0.95
135 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (133 bp):
AGCAGACTGAAGATTGTAGATCTTATCTCCTTGAGATAGAAGTGGAACAGATCAAAGACGACAAA
TCTTATCTTCTCGAAGCAGAAGGGGAACAGATTTAAGCCACCAGCCTCATCTCCCTGAAGTAGCA
AGG
Found at i:25169810 original size:21 final size:20
Alignment explanation
Indices: 25169781--25169828 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
25169771 AAAACAAATG
* *
25169781 AGCTGAAACGAGCTAAAATCA
1 AGCTCAAACAAGCTAAAA-CA
*
25169802 AGCTCAAACAAGCTAAAACG
1 AGCTCAAACAAGCTAAAACA
25169822 AGCTCAA
1 AGCTCAA
25169829 GTGAGCTGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.48, C:0.23, G:0.17, T:0.12
Consensus pattern (20 bp):
AGCTCAAACAAGCTAAAACA
Found at i:25171013 original size:32 final size:27
Alignment explanation
Indices: 25170949--25171036 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
25170939 CAGCATGGCT
* **
25170949 ACCAGAACAGATA-TTGTGACAGAATC
1 ACCAGAACAGATATTTGTGGCAGAGCC
*
25170975 ACCAGATACAAATA-TTGTGGCAGAGCC
1 ACCAGA-ACAGATATTTGTGGCAGAGCC
*
25171002 ACCAGAACAGATATTTGTGGCATAGCC
1 ACCAGAACAGATATTTGTGGCAGAGCC
25171029 ACCAGAAC
1 ACCAGAAC
25171037 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
26 12 0.22
27 42 0.78
ACGTcount: A:0.39, C:0.23, G:0.20, T:0.18
Consensus pattern (27 bp):
ACCAGAACAGATATTTGTGGCAGAGCC
Found at i:25181535 original size:50 final size:48
Alignment explanation
Indices: 25181472--25181661 Score: 166
Period size: 50 Copynumber: 3.8 Consensus size: 48
25181462 CGAAGCTATC
* * * *
25181472 TGATACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCAT
1 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CTAAACAT
* * * * *
25181521 CTGATACATGTAGTAGCCTGCA-TGTTGTACTACAGACGTGATCGAAGTCAT
1 -TGATACACGTAGTAGCCTGCACT-TAGTACTACACACGTGA-CTAA-ACAT
* * * * *
25181572 TGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAGT
1 TGA-TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTAAACA-T
*
25181622 ATGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTG
1 -TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTG
25181662 TATTCACAAT
Statistics
Matches: 110, Mismatches: 24, Indels: 12
0.75 0.16 0.08
Matches are distributed among these distances:
49 3 0.03
50 73 0.66
51 33 0.30
52 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (48 bp):
TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTAAACAT
Found at i:25181636 original size:101 final size:101
Alignment explanation
Indices: 25181475--25181661 Score: 261
Period size: 101 Copynumber: 1.9 Consensus size: 101
25181465 AGCTATCTGA
* * * *
25181475 TACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATCTGATACATGTAGTAGCCT
1 TACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCTCAACATATGATACACGTAGTAGCCT
* *
25181540 GCA-TGTTGTACTACAGACGTGATCGAAGTCATTGAG
66 GCACT-TAGTACTACACACGTGATCGAAGTCATTGAG
* * *
25181576 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-CTTAACAGTATGGTACACGTAGTAGCC
1 TACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCTCAACA-TATGATACACGTAGTAGCC
25181640 TGCACTTAGTACTACACACGTG
65 TGCACTTAGTACTACACACGTG
25181662 TATTCACAAT
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
100 5 0.07
101 69 0.92
102 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.26
Consensus pattern (101 bp):
TACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCTCAACATATGATACACGTAGTAGCCT
GCACTTAGTACTACACACGTGATCGAAGTCATTGAG
Found at i:25188760 original size:50 final size:50
Alignment explanation
Indices: 25188642--25188879 Score: 239
Period size: 50 Copynumber: 4.8 Consensus size: 50
25188632 AGCCGAAGCT
* * * * *
25188642 ATCTGATACGCATAGTAGCCTACACTTAGTACTACACATGCGACC-AACA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACC
* * * *
25188691 ATCCGATACACGTAGTAGCCTGTACTTAGTACTACACACGTGACCTCACC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACC
* * * *
25188741 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAA-CC
** * * *
25188792 AT-TGAGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTAA-C
1 ATCTGA-TACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACC
* * *
25188841 AGTGTGGTACATGTAGTAGCCTGCACTTAGTACTACACA
1 A-TCTGATACACGTAGTAGCCTGCACTTAGTACTACACA
25188880 GTTGTATTCA
Statistics
Matches: 156, Mismatches: 28, Indels: 9
0.81 0.15 0.05
Matches are distributed among these distances:
49 40 0.26
50 77 0.49
51 39 0.25
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACC
Found at i:25191383 original size:27 final size:26
Alignment explanation
Indices: 25191316--25191399 Score: 96
Period size: 27 Copynumber: 3.2 Consensus size: 26
25191306 ATGGCTACCG
* * *
25191316 GAACAGATATTGTGACAGAGTCACCG
1 GAACAGATATTGTGGCAGAGCCACCA
* *
25191342 GATACAAATAATGTGGCAGAGCCACCA
1 GA-ACAGATATTGTGGCAGAGCCACCA
*
25191369 GAACAGATATTTGTGGCATAGCCACCA
1 GAACAGATA-TTGTGGCAGAGCCACCA
25191396 GAAC
1 GAAC
25191400 GCTTCCTCCA
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
26 8 0.17
27 40 0.83
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (26 bp):
GAACAGATATTGTGGCAGAGCCACCA
Found at i:25193969 original size:21 final size:22
Alignment explanation
Indices: 25193933--25193984 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
25193923 TCACAATTCT
25193933 TTTTCTTTTCTCTTTCATTTTC-
1 TTTTC-TTTCTCTTTCATTTTCA
*
25193955 TTTTCTTTCTTTTTCATTTTCA
1 TTTTCTTTCTCTTTCATTTTCA
*
25193977 CTTTCTTT
1 TTTTCTTT
25193985 TTCCACTCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 15 0.56
22 12 0.44
ACGTcount: A:0.06, C:0.21, G:0.00, T:0.73
Consensus pattern (22 bp):
TTTTCTTTCTCTTTCATTTTCA
Found at i:25197269 original size:15 final size:15
Alignment explanation
Indices: 25197249--25197279 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
25197239 ACTTACAAAG
25197249 AAATAAAAAATAATT
1 AAATAAAAAATAATT
*
25197264 AAATAAAATATAATT
1 AAATAAAAAATAATT
25197279 A
1 A
25197280 TTCATATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (15 bp):
AAATAAAAAATAATT
Found at i:25197513 original size:10 final size:10
Alignment explanation
Indices: 25197500--25197544 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
25197490 AAAAGAAATA
*
25197500 AGCTGAAACG
1 AGCTAAAACG
*
25197510 AGCTAAAATCA
1 AGCTAAAA-CG
*
25197521 AGCTCAAACG
1 AGCTAAAACG
25197531 AGCTAAAACG
1 AGCTAAAACG
25197541 AGCT
1 AGCT
25197545 CAAGTGAGCT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
10 21 0.72
11 8 0.28
ACGTcount: A:0.44, C:0.22, G:0.20, T:0.13
Consensus pattern (10 bp):
AGCTAAAACG
Found at i:25197554 original size:20 final size:21
Alignment explanation
Indices: 25197495--25197547 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
25197485 AATGAAAAAG
*
25197495 AAAT-AAGCTGAAACGAGCTA
1 AAATCAAGCTCAAACGAGCTA
25197515 AAATCAAGCTCAAACGAGCTA
1 AAATCAAGCTCAAACGAGCTA
*
25197536 AAA-CGAGCTCAA
1 AAATCAAGCTCAA
25197548 GTGAGCTGGT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 12 0.40
21 18 0.60
ACGTcount: A:0.49, C:0.21, G:0.17, T:0.13
Consensus pattern (21 bp):
AAATCAAGCTCAAACGAGCTA
Found at i:25204705 original size:15 final size:15
Alignment explanation
Indices: 25204685--25204727 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
25204675 TGCTGTAAAT
25204685 TGGATTTCCTTATCA
1 TGGATTTCCTTATCA
* *
25204700 TGGATTTCTTTATCT
1 TGGATTTCCTTATCA
25204715 TGGATTTCCTTAT
1 TGGATTTCCTTAT
25204728 TCTGGGCTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.16, C:0.16, G:0.14, T:0.53
Consensus pattern (15 bp):
TGGATTTCCTTATCA
Found at i:25212402 original size:655 final size:656
Alignment explanation
Indices: 25210508--25212841 Score: 4508
Period size: 656 Copynumber: 3.6 Consensus size: 656
25210498 GGGTGTTACT
* *
25210508 GGGCGGATCTTCTACGATCTCTGACTCCTGTGCTAGCTAGACGACACTATAAGACAAAGGAGAGA
1 GGGCGGATCTTCTACGATCTCTGACTCCTTTGCTAGCTGGACGACACTATAAGACAAAGGAGAGA
25210573 AAAGAAAGTAAGCTTATAGCTTAGTAAGTAAGTATATAAATAACAAATAAGAAATCTAATATGTT
66 AAAGAAAGTAAGCTTATAGCTTAGTAAGTAAGTATATAAATAACAAATAAGAAATCTAATATGTT
25210638 TACAACATAACTCAATTATATCATATTTTTAATTTTATTGTTTACTCCAATTTGATCAAGCTGTC
131 TACAACATAACTCAATTATATCATATTTTTAATTTTATTGTTTACTCCAATTTGATCAAGCTGTC
*
25210703 CCTCCTGCGTCACGATCACTAAATAAATCATAACTCGAGTTACGAAACTCGAAATTCAAATCCGT
196 CCTCCTGCGTCATGATCACTAAATAAATCATAACTCGAGTTACGAAACTCGAAATTCAAATCCGT
25210768 AAAATTTCCCTAAATCTAGACTCATAAAACTTCTTACTAATTTTTTTCTAGAATTTTTGGTTCAG
261 AAAATTTCCCTAAATCTAGACTCATAAAACTTCTTACTAATTTTTTTCTAGAATTTTTGGTTCAG
* * *
25210833 CCAATTAGTAGAGTTTATTAGTTAAAGTTTCCCCTATTACACAGCACCCCTTACTCGTATCCGTC
326 CCAATTAGTAGAGTTTATTAGTTAAAGTTTCCCCTGTTACATAGCACCCCTTACCCGTATCCGTC
25210898 GCCGGAATAGGGTACGAGGTATTAACAAATTATAGTATATACTATTAAACAAAACCCAACAAAAA
391 GCCGGAATAGGGTACGAGGTATTAACAAATTATAGTATATACTATTAAACAAAACCCAACAAAAA
25210963 TATGGCGTGCAATTTGATCATTATAACATATGCCATTAACAATACAAACCAACTTCAAAGGCTTT
456 TATGGCGTGCAATTTGATCATTATAACATATGCCATTAACAATACAAACCAACTTCAAAGGCTTT
*
25211028 GTACAAAATGATTAGTTTGATACTATAAGTAGTAATTTGAACCTAGACAACTATGACACGTAACA
521 GTACAAAATGATTAGTTTGATACTATAAGTAGTAATTTGAACCTAGACAACTATGACACGTAAGA
*
25211093 AAATAACTAAGTCTACTATACATGCCATATTTCAAAATGTTGAGTTCAGATACCAAGAGTATTGA
586 AAATAACTAAGTCTGCTATACATGCCATATTTCAAAATGTTGAGTTCAGATACCAAGAGTATTGA
25211158 TAGTGC
651 TAGTGC
25211164 GGGCGGATCTTCTACGATCTCTGACTCCTTTGCTAGCTGGACGACACTATAAGACAAAGGAGAGA
1 GGGCGGATCTTCTACGATCTCTGACTCCTTTGCTAGCTGGACGACACTATAAGACAAAGGAGAGA
25211229 AAAGAAAGTAAGCTTATAGCTTAGTAAGTAAGTATATAAATAACAAATAAGAAATCTAATATGTT
66 AAAGAAAGTAAGCTTATAGCTTAGTAAGTAAGTATATAAATAACAAATAAGAAATCTAATATGTT
25211294 TACAACATAACTCAATTATATCATATTTTTAATTTTATTGTTTACTCCAATTTGATCAAGCTGTC
131 TACAACATAACTCAATTATATCATATTTTTAATTTTATTGTTTACTCCAATTTGATCAAGCTGTC
25211359 CCTCCTGCGTCATGATCACTAAATAAATCATAACTCGAGTTACGAAACTCGAAATTCAAATCCGT
196 CCTCCTGCGTCATGATCACTAAATAAATCATAACTCGAGTTACGAAACTCGAAATTCAAATCCGT
*
25211424 ATAATTTCCCTAAATCTAGACTCATAAAACTTCTTACTAATTTTTTTCTAGAATTTTTGGTTCAG
261 AAAATTTCCCTAAATCTAGACTCATAAAACTTCTTACTAATTTTTTTCTAGAATTTTTGGTTCAG
25211489 CCAATTAGTAGAGTTTATTAGTTAAAGTTTCCCCTGTTACATAGCACCCCTTACCCGTATCCGTC
326 CCAATTAGTAGAGTTTATTAGTTAAAGTTTCCCCTGTTACATAGCACCCCTTACCCGTATCCGTC
25211554 GCCGGAATAGGGTACGAGGTATTAACAAATTATAGTATATACTATTAAACAAAACCCAACAAAAA
391 GCCGGAATAGGGTACGAGGTATTAACAAATTATAGTATATACTATTAAACAAAACCCAACAAAAA
25211619 TATGGCGTGCAATTTGATCATTATAACATATGCCATTAACAATACAAACCAACTTCAAAGGCTTT
456 TATGGCGTGCAATTTGATCATTATAACATATGCCATTAACAATACAAACCAACTTCAAAGGCTTT
25211684 GTACAAAATGATTAGTTTGATACTATAAGTAGTAATTTGAACCTAGACAACTATGACACGTAAGA
521 GTACAAAATGATTAGTTTGATACTATAAGTAGTAATTTGAACCTAGACAACTATGACACGTAAGA
25211749 AAATAACTAAGTCTGCTATACATGCCATATTTCAAAATGTTGAGTTCAGATACCAAGAGTATTGA
586 AAATAACTAAGTCTGCTATACATGCCATATTTCAAAATGTTGAGTTCAGATACCAAGAGTATTGA
25211814 TAGTGC
651 TAGTGC
25211820 GGGCGGATCTTCTACGATCTCTGACTCCTTTGCTAGCTGGACGACACTATAAGACAAAGGAGAGA
1 GGGCGGATCTTCTACGATCTCTGACTCCTTTGCTAGCTGGACGACACTATAAGACAAAGGAGAGA
25211885 AAAGAAAGTAAGCTTATAGCTTAGTAAGTAAGTATATAAATAACAAATAAGAAATCTAATATGTT
66 AAAGAAAGTAAGCTTATAGCTTAGTAAGTAAGTATATAAATAACAAATAAGAAATCTAATATGTT
25211950 TACAACATAACTCAATTATATCATATTTTTAA-TTTATTGTTTACTCCAATTTGATCAAGCTGTC
131 TACAACATAACTCAATTATATCATATTTTTAATTTTATTGTTTACTCCAATTTGATCAAGCTGTC
25212014 CCTCCTGCGTCATGATCACTAAATAAATCATAACTCGAGTTACGAAACTCGAAATTCAAATCCGT
196 CCTCCTGCGTCATGATCACTAAATAAATCATAACTCGAGTTACGAAACTCGAAATTCAAATCCGT
25212079 AAAATTTCCCTAAATCTAGACTCATAAAACTTCTTACTAATTTTTTTCTAGAATTTTTGGTTCAG
261 AAAATTTCCCTAAATCTAGACTCATAAAACTTCTTACTAATTTTTTTCTAGAATTTTTGGTTCAG
25212144 CCAATTAGTAGAGTTTATTAGTTAAAGTTTCCCCTGTTACATAGCACCCCTTACCCGTATCCGTC
326 CCAATTAGTAGAGTTTATTAGTTAAAGTTTCCCCTGTTACATAGCACCCCTTACCCGTATCCGTC
25212209 GCCGGAATAGGGTACGAGGTATTAACAAATTATAGTATATACTATTAAACAAAACCCAACAAAAA
391 GCCGGAATAGGGTACGAGGTATTAACAAATTATAGTATATACTATTAAACAAAACCCAACAAAAA
25212274 TATGGCGTGCAATTTGATCATTATAACATATGCCATTAACAATACAAACCAACTTCAAAGGCTTT
456 TATGGCGTGCAATTTGATCATTATAACATATGCCATTAACAATACAAACCAACTTCAAAGGCTTT
25212339 GTACAAAATGATTAGTTTGATACTATAAGTAGTAATTTGAACCTAGACAACTATGACACGTAAGA
521 GTACAAAATGATTAGTTTGATACTATAAGTAGTAATTTGAACCTAGACAACTATGACACGTAAGA
25212404 AAATAACTAAGTCTGCTATACATGCCATATTTCAAAATGTTGAGTTCAGATACCAAGAGTATTGA
586 AAATAACTAAGTCTGCTATACATGCCATATTTCAAAATGTTGAGTTCAGATACCAAGAGTATTGA
25212469 TAGTGC
651 TAGTGC
*
25212475 GGGCGGATCTTCTACGATCTCTGACTCCTTTGCTAGCTGGACCACACTATAAGACAAAGGAGAGA
1 GGGCGGATCTTCTACGATCTCTGACTCCTTTGCTAGCTGGACGACACTATAAGACAAAGGAGAGA
25212540 AAAGAAAGTAAGCTTATAGCTTAGTAAGTAAGTATATAAATAACAAATAAGAAATCTAATATGTT
66 AAAGAAAGTAAGCTTATAGCTTAGTAAGTAAGTATATAAATAACAAATAAGAAATCTAATATGTT
*
25212605 TACAACATAACTCAATTATATCATATTTTTAATTTTATTGTTTACTCCAATTTGATCAAGTTGTC
131 TACAACATAACTCAATTATATCATATTTTTAATTTTATTGTTTACTCCAATTTGATCAAGCTGTC
* *
25212670 CCTCCTGCGTCATGATCACTAAAATAAATCATAACTCGAGTTACGAAACTCAAAATTCAAATCTG
196 CCTCCTGCGTCATGATCACT-AAATAAATCATAACTCGAGTTACGAAACTCGAAATTCAAATCCG
* *
25212735 TAAAATTTCCCTGAATCTAGACTCATAAAAATTCTTACTAATTTTTTTCTAGAATTTTTGGTTCA
260 TAAAATTTCCCTAAATCTAGACTCATAAAACTTCTTACTAATTTTTTTCTAGAATTTTTGGTTCA
*
25212800 GCCAATTAGTACAGTTTATTAGTTAAAGTTTCCCCTGTTACA
325 GCCAATTAGTAGAGTTTATTAGTTAAAGTTTCCCCTGTTACA
25212842 CAGCTCAATT
Statistics
Matches: 1659, Mismatches: 17, Indels: 3
0.99 0.01 0.00
Matches are distributed among these distances:
655 653 0.39
656 860 0.52
657 146 0.09
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.32
Consensus pattern (656 bp):
GGGCGGATCTTCTACGATCTCTGACTCCTTTGCTAGCTGGACGACACTATAAGACAAAGGAGAGA
AAAGAAAGTAAGCTTATAGCTTAGTAAGTAAGTATATAAATAACAAATAAGAAATCTAATATGTT
TACAACATAACTCAATTATATCATATTTTTAATTTTATTGTTTACTCCAATTTGATCAAGCTGTC
CCTCCTGCGTCATGATCACTAAATAAATCATAACTCGAGTTACGAAACTCGAAATTCAAATCCGT
AAAATTTCCCTAAATCTAGACTCATAAAACTTCTTACTAATTTTTTTCTAGAATTTTTGGTTCAG
CCAATTAGTAGAGTTTATTAGTTAAAGTTTCCCCTGTTACATAGCACCCCTTACCCGTATCCGTC
GCCGGAATAGGGTACGAGGTATTAACAAATTATAGTATATACTATTAAACAAAACCCAACAAAAA
TATGGCGTGCAATTTGATCATTATAACATATGCCATTAACAATACAAACCAACTTCAAAGGCTTT
GTACAAAATGATTAGTTTGATACTATAAGTAGTAATTTGAACCTAGACAACTATGACACGTAAGA
AAATAACTAAGTCTGCTATACATGCCATATTTCAAAATGTTGAGTTCAGATACCAAGAGTATTGA
TAGTGC
Found at i:25213640 original size:68 final size:68
Alignment explanation
Indices: 25213493--25213648 Score: 149
Period size: 68 Copynumber: 2.2 Consensus size: 68
25213483 AGCCGATTTT
* * * * *
25213493 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACTCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATA
*
25213558 TATC
65 TATA
* *
25213562 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
25213624 ATATAGTA
62 ATATA-TA
25213632 TCTCGTAGC-CTTCTTGT
1 TCTCGTAGCTC-TCTTGT
25213649 ACACATGATG
Statistics
Matches: 73, Mismatches: 8, Indels: 13
0.78 0.09 0.14
Matches are distributed among these distances:
67 1 0.01
68 33 0.45
69 7 0.10
70 6 0.08
71 26 0.36
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATAT
ATA
Found at i:25217072 original size:37 final size:37
Alignment explanation
Indices: 25217011--25217157 Score: 235
Period size: 37 Copynumber: 4.0 Consensus size: 37
25217001 TACGTATGAT
* *
25217011 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
25217046 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
25217083 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
* *
25217120 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
25217157 C
1 C
25217158 GAAGCTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 92 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:25217199 original size:52 final size:52
Alignment explanation
Indices: 25217120--25217290 Score: 279
Period size: 52 Copynumber: 3.2 Consensus size: 52
25217110 TAAGTGTAGC
* * *
25217120 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
25217173 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* *
25217225 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
25217277 CACTTTGTCACTTG
1 CACTTT-TCACTTG
25217291 ATCAGAAGTA
Statistics
Matches: 111, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
52 96 0.86
53 15 0.14
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
Found at i:25223073 original size:68 final size:69
Alignment explanation
Indices: 25222924--25223081 Score: 164
Period size: 68 Copynumber: 2.3 Consensus size: 69
25222914 CTATCCGATT
* * *
25222924 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACTCATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTTGGAATCACACATGCGACCTAGCTACA
*
25222989 TTTA
66 TATA
* * *
25222993 TCTCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-T-GTATCACACATGTGACCTAGCT
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTTGGAATCACACATGCGACCTAGCT
25223054 ACTATATA
63 AC-ATATA
25223062 GTATCTCGTAGC-CTTCTTGT
1 -TATCTCGTAGCTC-TCTTGT
25223082 ACACATGATG
Statistics
Matches: 75, Mismatches: 8, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
67 1 0.01
68 33 0.44
69 9 0.12
70 6 0.08
71 26 0.35
ACGTcount: A:0.21, C:0.27, G:0.16, T:0.36
Consensus pattern (69 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTTGGAATCACACATGCGACCTAGCTACA
TATA
Found at i:25226650 original size:45 final size:45
Alignment explanation
Indices: 25226504--25227029 Score: 270
Period size: 45 Copynumber: 11.8 Consensus size: 45
25226494 AGGGGTGTTA
*
25226504 CAAGATCTTATCTCCCTG-AGTTGCAGTGGAGCAGA-TCGAAAAT-G
1 CAAG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAGATAG
* ** * * * * **
25226548 AAAAACCTTATCTCTCTAAAGTTGCAGTAGAGTAGGTTGAAG-TAG
1 -CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAG
25226593 CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAG
1 CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAG
* * *
25226638 CAAGTATTATCTCCCTGAAGTTGTAGTGGAGTAGACTGAAGATAG
1 CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAG
* * *** * **
25226683 C-AGATCTTATCTTCCTTAAGTTATTGTGAAATAGA-TCGAAGATAG
1 CAAG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAGATAG
** * * * * **
25226728 CAAACCTTATCTCTCTGAAATTGCGGTAGAGCAGGTTGAAG-TAG
1 CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAG
* * * *
25226772 CAAGTATTATCTCCCTCAAGTTGTAGTGGAGCAGACTGAAGACCA-
1 CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGA-TAG
** * * * * *
25226817 CAAACCTTATCTCCCTGAAGTTGCAGTGAAGCAG-GTTAAAAGTAC
1 CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGA-TAG
* * * * * * * *
25226862 CAACTCTTACCTACTTGAAGTTCCAGTGGAGTAGATTGAAGCTA-
1 CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAG
* * * * **
25226906 CAAATCTCT-TCTCCCTGAAATTACATTGGAGCAGA-TCGAAGCCA-
1 CAAGTCT-TATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAGATAG
* * * * * * * *
25226950 CAATTCTTATCTCTCTGAAGTTGTAGTAGAGAAAGA-TAAAAATACA
1 CAAGTCTTATCTCCCTGAAGTTGCAGTGGAG-CAGACTGAAGATA-G
** *
25226996 CAAACCTTATTTCCCTGAAGTTGCAGTGGAGCAG
1 CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG
25227030 GTTGAAATTA
Statistics
Matches: 358, Mismatches: 105, Indels: 36
0.72 0.21 0.07
Matches are distributed among these distances:
43 2 0.01
44 140 0.39
45 184 0.51
46 32 0.09
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (45 bp):
CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAG
Found at i:25226768 original size:90 final size:89
Alignment explanation
Indices: 25226550--25226843 Score: 263
Period size: 89 Copynumber: 3.3 Consensus size: 89
25226540 CGAAAATGAA
25226550 AAACCTTATCTCTCT-AAAGTTGCAGTAGAGTAGGTTGAAGTAGCAAGTCTTATCTCCCTGAAGT
1 AAACCTTATCTCTCTGAAA-TTGCAGTAGAGTAGGTTGAAGTAGCAAGTCTTATCTCCCTGAAGT
* * *
25226614 TGCAGTGGAGCAGACTGAAGATAGC
65 TACAGTGAAACAGACTGAAGATAGC
*** * * * * ** * *
25226639 AAGTATTATCTCCCTGAAGTTGTAGTGGAGTAGACTGAAGATAGC-AGATCTTATCTTCCTTAAG
1 AAACCTTATCTCTCTGAAATTGCAGTAGAGTAGGTTGAAG-TAGCAAG-TCTTATCTCCCTGAAG
** *
25226703 TTATTGTGAAATAGA-TCGAAGATAGC
64 TTACAGTGAAACAGACT-GAAGATAGC
* * * *
25226729 AAACCTTATCTCTCTGAAATTGCGGTAGAGCAGGTTGAAGTAGCAAGTATTATCTCCCTCAAGTT
1 AAACCTTATCTCTCTGAAATTGCAGTAGAGTAGGTTGAAGTAGCAAGTCTTATCTCCCTGAAGTT
** * * *
25226794 GTAGTGGAGCAGACTGAAGACCA-C
66 ACAGTGAAACAGACTGAAGA-TAGC
* *
25226818 AAACCTTATCTCCCTGAAGTTGCAGT
1 AAACCTTATCTCTCTGAAATTGCAGT
25226844 GAAGCAGGTT
Statistics
Matches: 158, Mismatches: 40, Indels: 14
0.75 0.19 0.07
Matches are distributed among these distances:
89 87 0.55
90 71 0.45
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (89 bp):
AAACCTTATCTCTCTGAAATTGCAGTAGAGTAGGTTGAAGTAGCAAGTCTTATCTCCCTGAAGTT
ACAGTGAAACAGACTGAAGATAGC
Found at i:25226901 original size:134 final size:131
Alignment explanation
Indices: 25226511--25226902 Score: 342
Period size: 134 Copynumber: 2.9 Consensus size: 131
25226501 TTACAAGATC
* * * * * *
25226511 TTATCTCCCTGAGTTGCAGTGGAGCAGA-TCGAAAATGAAAAACCTTATCTCTCTAAAGTTGCAG
1 TTATCTCCCTAAGTTGTAGTGGAGCAGACT-GAAGA-CACAAACCTTATCTCCCTAAAGTTGCAG
* * * *
25226575 T-AGAGTAGGTTGAAGTAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC
64 TGA-AGTAGGTTGAAGTACCAACTCTTATCT-CTTGAAGTTGCAGTGGAGCAGATTGAAGATAGC
25226639 AAGTA
127 AAGTA
* * * * * * ***
25226644 TTATCTCCCTGAAGTTGTAGTGGAGTAGACTGAAGATAGCAGATCTTATCTTCCTTAAGTTATTG
1 TTATCTCCCT-AAGTTGTAGTGGAGCAGACTGAAGACA-CAAACCTTATCTCCCTAAAGTTGCAG
* * * * * * * *
25226709 TGAAATAGATCGAAGATAGCAAAC-CTTATCTCTCTGAAATTGCGGTAGAGCAGGTTGAAG-TAG
64 TGAAGTAGGTTGAAG-TA-CCAACTCTTATCTCT-TGAAGTTGCAGTGGAGCAGATTGAAGATAG
25226772 CAAGTA
126 CAAGTA
*
25226778 TTATCTCCCTCAAGTTGTAGTGGAGCAGACTGAAGACCACAAACCTTATCTCCCTGAAGTTGCAG
1 TTATCTCCCT-AAGTTGTAGTGGAGCAGACTGAAGA-CACAAACCTTATCTCCCTAAAGTTGCAG
* * * * *
25226843 TGAAGCAGGTTAAAAGTACCAACTCTTACCTACTTGAAGTTCCAGTGGAGTAGATTGAAG
64 TGAAGTAGGTT-GAAGTACCAACTCTTATCT-CTTGAAGTTGCAGTGGAGCAGATTGAAG
25226903 CTACAAATCT
Statistics
Matches: 199, Mismatches: 49, Indels: 21
0.74 0.18 0.08
Matches are distributed among these distances:
133 15 0.08
134 144 0.72
135 38 0.19
136 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (131 bp):
TTATCTCCCTAAGTTGTAGTGGAGCAGACTGAAGACACAAACCTTATCTCCCTAAAGTTGCAGTG
AAGTAGGTTGAAGTACCAACTCTTATCTCTTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAGT
A
Found at i:25227001 original size:179 final size:179
Alignment explanation
Indices: 25226815--25227148 Score: 483
Period size: 179 Copynumber: 1.9 Consensus size: 179
25226805 GACTGAAGAC
25226815 CACAAACCTTATCTCCCTGAAGTTGCAGTGAAGCAGGTTAAAAGTACCAACTCTTACCTACTTGA
1 CACAAACCTTATCTCCCTGAAGTTGCAGTGAAGCAGGTTAAAAGTACCAACTCTTACCTACTTGA
* ** *
25226880 AGTTCCAGTGGAGTAGATTGAAGCTACAAATCTCTTCTCCCTGAAATTACATTGGAGCAGATCGA
66 ACTTCCAGCAGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATTACATTGGAGCAGATCGA
*
25226945 AGC-CACAATTCTTAT-CTCTCTGAAGTTGTAGTAGAGAAAGATAAAAATA
131 AGCAC-CAATTCCTATAC-CTCTGAAGTTGTAGTAGAGAAAGATAAAAATA
* * * * * * *
25226994 CACAAACCTTATTTCCCTGAAGTTGCAGTGGAGCAGGTTGAAATTACCAATTCTTATCTCCTTGA
1 CACAAACCTTATCTCCCTGAAGTTGCAGTGAAGCAGGTTAAAAGTACCAACTCTTACCTACTTGA
* * * * *
25227059 ACTTTCAGCAGAGTAGATCGAAGCTACAAATCTTTTTTCCCTGAAGTTACATTGGAGCGGATCGA
66 ACTTCCAGCAGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATTACATTGGAGCAGATCGA
25227124 AGCACCAATTCCTATACCTCTGAAG
131 AGCACCAATTCCTATACCTCTGAAG
25227149 ATACAATAGA
Statistics
Matches: 136, Mismatches: 17, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
179 134 0.99
180 2 0.01
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (179 bp):
CACAAACCTTATCTCCCTGAAGTTGCAGTGAAGCAGGTTAAAAGTACCAACTCTTACCTACTTGA
ACTTCCAGCAGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATTACATTGGAGCAGATCGA
AGCACCAATTCCTATACCTCTGAAGTTGTAGTAGAGAAAGATAAAAATA
Found at i:25227115 original size:89 final size:87
Alignment explanation
Indices: 25226828--25227116 Score: 240
Period size: 89 Copynumber: 3.2 Consensus size: 87
25226818 AAACCTTATC
* * * * * * * *
25226828 TCCCTGAAGTTGCAGTGAAGCAGGTTAAAAGTACCAACTCTTACCTACTTGAAGTTCCAGTGGAG
1 TCCCTGAAGTTACAGTGGAGCAGGTTGAAACTACCAATTCTTATCT-CTTGAAGTTTCAGTAGAG
* *
25226893 TAGATTGAAGCTACAAATCTCTTC
65 TAGA-TGAAGCTACAAATCTTTTT
* * * * * *
25226917 TCCCTGAAATTACATTGGAGCAGATCGAAGCCA-CAATTCTTATCTCTCTGAAGTTGT-AGTAGA
1 TCCCTGAAGTTACAGTGGAGCAGGTTGAAACTACCAATTCTTATCTCT-TGAAGTT-TCAGTAGA
* * ** * *
25226980 GAAAGATAAAAATACACAAACCTTATT
64 G-TAGATGAAGCT--ACAAATCTTTTT
* * * *
25227007 TCCCTGAAGTTGCAGTGGAGCAGGTTGAAATTACCAATTCTTATCTCCTTGAACTTTCAGCAGAG
1 TCCCTGAAGTTACAGTGGAGCAGGTTGAAACTACCAATTCTTATCT-CTTGAAGTTTCAGTAGAG
25227072 TAGATCGAAGCTACAAATCTTTTT
65 TAGAT-GAAGCTACAAATCTTTTT
*
25227096 TCCCTGAAGTTACATTGGAGC
1 TCCCTGAAGTTACAGTGGAGC
25227117 GGATCGAAGC
Statistics
Matches: 151, Mismatches: 40, Indels: 18
0.72 0.19 0.09
Matches are distributed among these distances:
87 2 0.01
88 27 0.18
89 55 0.36
90 38 0.25
91 27 0.18
92 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.29
Consensus pattern (87 bp):
TCCCTGAAGTTACAGTGGAGCAGGTTGAAACTACCAATTCTTATCTCTTGAAGTTTCAGTAGAGT
AGATGAAGCTACAAATCTTTTT
Found at i:25228041 original size:3 final size:3
Alignment explanation
Indices: 25228028--25228222 Score: 148
Period size: 3 Copynumber: 65.3 Consensus size: 3
25228018 TTGAGTTTTA
* * *
25228028 TAT TCAT TAT TAT TA- TATT TAT TAT TAT CT-C TGT TAT TAT T-T CTGT
1 TAT T-AT TAT TAT TAT TA-T TAT TAT TAT -TAT TAT TAT TAT TAT -TAT
* * * *
25228074 TAT TAC TGT TAC TAT TAT TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * * *
25228122 TAT TAT TAT TAT TAC CAC TAT TAT TAT TAT T-T TAT CAC TAC TGT CAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
25228169 TAT TAT TA- TAG TAT TAT TAG TAT TAT TAT TAC TAT TAT TTT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
25228216 TAT TAT T
1 TAT TAT T
25228223 TTTAAAACCA
Statistics
Matches: 152, Mismatches: 31, Indels: 18
0.76 0.15 0.09
Matches are distributed among these distances:
2 8 0.05
3 137 0.90
4 7 0.05
ACGTcount: A:0.29, C:0.07, G:0.04, T:0.61
Consensus pattern (3 bp):
TAT
Done.