Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 80 of 250
Found at i:25359462 original size:40 final size:42
Alignment explanation
Indices: 25359418--25359564 Score: 144
Period size: 40 Copynumber: 3.5 Consensus size: 42
25359408 CCCCCCCTTT
25359418 CCCCTCCCTCCCTCCTCCC-CCC-CCTACCCCTCCTCTTCTC
1 CCCCTCCCTCCCTCCTCCCTCCCTCCTACCCCTCCTCTTCTC
* * * *
25359458 CCCCTCTCTCTCTCCTCCCTCCCTCGCTTCCCC-CCTCTCCTC
1 CCCCTCCCTCCCTCCTCCCTCCCTC-CTACCCCTCCTCTTCTC
* * *
25359500 TCCCTCCCCTCCCTCCCCCCCTCCCTCCTACCTCATCCTC-TCTC
1 CCCCT-CCCTCCCT-CCTCCCTCCCTCCTACC-CCTCCTCTTCTC
*
25359544 CCCCTCTC-CCCTCCT-CCTCCC
1 CCCCTCCCTCCCTCCTCCCTCCC
25359565 CCCACCCTCC
Statistics
Matches: 86, Mismatches: 14, Indels: 14
0.75 0.12 0.12
Matches are distributed among these distances:
40 23 0.27
41 5 0.06
42 17 0.20
43 18 0.21
44 19 0.22
45 4 0.05
ACGTcount: A:0.02, C:0.70, G:0.01, T:0.27
Consensus pattern (42 bp):
CCCCTCCCTCCCTCCTCCCTCCCTCCTACCCCTCCTCTTCTC
Found at i:25359907 original size:63 final size:62
Alignment explanation
Indices: 25359838--25360302 Score: 188
Period size: 61 Copynumber: 7.1 Consensus size: 62
25359828 TCTCTCCCTT
25359838 CTCCCCCCTCTCCCCCTCCCTCCCTCCCCTCCCCTCCCCCCCTTTCTCTCCCCTCCCCCTCCC
1 CTCCCCCCTC-CCCCCTCCCTCCCTCCCCTCCCCTCCCCCCCTTTCTCTCCCCTCCCCCTCCC
* * * * ** * *
25359901 CT-CCCCCTCCCCCCTTTCCTTCC-CCCCTCTCCTACCCCCCTCCCTCTCTCCT-CTCCTCCC
1 CTCCCCCCTCCCCCC-TCCCTCCCTCCCCTCCCCTCCCCCCCTTTCTCTCCCCTCCCCCTCCC
*
25359961 TACTCGCCCCCATCCCTCCCTACCCTACCC-CCCCTCCCCTATCTCCCCTCCTCTTTCCCTCCCC
1 --CTC-CCCCC-TCCC-CCCT-CCCT-CCCTCCCCT-CCC---CTCCCC-CC-CTTTCTCTCCCC
*
25360025 TCTCCCCT-AC
53 TC-CCCCTCCC
* *** *
25360035 CTCCCCCCCTCCCTCCC-CCC-CTCTCCCCTACCCCTCCCCCCCCCCCTCCCCCTCCTCCCCCTC
1 CT-CCCCCCTCCC-CCCTCCCTCCCTCCCCT-CCCCTCCCCCCCTTTCT-CTCC-CCTCCCCCTC
25360098 CC
61 CC
* * * *
25360100 CCCCCCCCTCTCTTACCCC-CCTCTCTACTCCCCTCCCCCTTCCCCCTCTTCTCCCTATCCCC-C
1 CTCCCCCCTC-C---CCCCTCC-CTC-CCTCCCCT-CCCC-TCCCCCCCTT-T--CTCTCCCCTC
25360163 CCCCTCCC
55 CCCCTCCC
* * * *
25360171 C-CTCCCCTCCCCTCTCCCTACTCCTTCCCCTCCCCT-CTCCCC--TCTC-CCCC-CCCTCTCCC
1 CTCCCCCCTCCCCCCTCCCT-C-CC-TCCCCTCCCCTCCCCCCCTTTCTCTCCCCTCCCCCT-CC
25360230 C
62 C
* * * *
25360231 CTACTACCCCTCCCTCCTCCCTCCCCTCTCCTCTCCCCTCCCCCCCCTTCCCTACCCCTCCCCC-
1 CT-C-CCCCCTCCCCCCTCCCT-CCCTC-CC-CTCCCCTCCCCCCCTTTCTCT-CCCCTCCCCCT
*
25360295 CTC
60 CCC
25360298 CTCCC
1 CTCCC
25360303 TTTACCCCAT
Statistics
Matches: 303, Mismatches: 51, Indels: 94
0.68 0.11 0.21
Matches are distributed among these distances:
59 9 0.03
60 13 0.04
61 31 0.10
62 21 0.07
63 26 0.09
64 28 0.09
65 23 0.08
66 16 0.05
67 27 0.09
68 22 0.07
69 9 0.03
70 18 0.06
71 30 0.10
72 11 0.04
73 12 0.04
74 3 0.01
75 4 0.01
ACGTcount: A:0.03, C:0.72, G:0.00, T:0.24
Consensus pattern (62 bp):
CTCCCCCCTCCCCCCTCCCTCCCTCCCCTCCCCTCCCCCCCTTTCTCTCCCCTCCCCCTCCC
Found at i:25360031 original size:7 final size:7
Alignment explanation
Indices: 25360019--25360302 Score: 61
Period size: 7 Copynumber: 39.7 Consensus size: 7
25360009 TCCTCTTTCC
25360019 CTCCCCT
1 CTCCCCT
25360026 CTCCCCT
1 CTCCCCT
25360033 ACCTCCCC-
1 --CTCCCCT
*
25360041 CCCTCCCT
1 CTC-CCCT
*
25360049 CCCCCCCT
1 -CTCCCCT
25360057 CTCCCCT
1 CTCCCCT
*
25360064 -ACCCCT
1 CTCCCCT
25360070 C-CCCC-
1 CTCCCCT
*
25360075 CCCCCCT
1 CTCCCCT
25360082 C-CCCCT
1 CTCCCCT
25360088 CCTCCCC-
1 -CTCCCCT
*
25360095 CTCCCCC
1 CTCCCCT
*
25360102 CCCCCCT
1 CTCCCCT
25360109 CTCTTACCC-
1 CTC---CCCT
25360118 C-CCTCTCT
1 CTCC-C-CT
25360126 ACTCCCCT
1 -CTCCCCT
25360134 C-CCCCT
1 CTCCCCT
25360140 -TCCCCCT
1 CT-CCCCT
25360147 CTTCTCCCT
1 C-TC-CCCT
*
25360156 ATCCCC-
1 CTCCCCT
25360162 C-CCCCT
1 CTCCCCT
25360168 C-CCCCT
1 CTCCCCT
25360174 CCCCTCCCCT
1 ---CTCCCCT
25360184 CT-CCCT
1 CTCCCCT
*
25360190 ACTCCTTCCC
1 -CTCC--CCT
25360200 CTCCCCT
1 CTCCCCT
25360207 CTCCCCT
1 CTCCCCT
25360214 CT-CCC-
1 CTCCCCT
25360219 C-CCCCT
1 CTCCCCT
25360225 CTCCCCCT
1 CT-CCCCT
25360233 ACTACCCCT
1 -CT-CCCCT
25360242 C-CCTCCT
1 CTCC-CCT
25360249 CCCTCCCCT
1 --CTCCCCT
25360258 CT--CCT
1 CTCCCCT
25360263 CTCCCCT
1 CTCCCCT
* *
25360270 CCCCCCC
1 CTCCCCT
*
25360277 CTTCCCT
1 CTCCCCT
*
25360284 -ACCCCT
1 CTCCCCT
*
25360290 CCCCCCT
1 CTCCCCT
25360297 CCTCCC
1 -CTCCC
25360303 TTTACCCCAT
Statistics
Matches: 211, Mismatches: 20, Indels: 91
0.66 0.06 0.28
Matches are distributed among these distances:
5 15 0.07
6 52 0.25
7 72 0.34
8 25 0.12
9 33 0.16
10 14 0.07
ACGTcount: A:0.03, C:0.74, G:0.00, T:0.23
Consensus pattern (7 bp):
CTCCCCT
Found at i:25360060 original size:128 final size:123
Alignment explanation
Indices: 25359824--25360060 Score: 275
Period size: 128 Copynumber: 1.9 Consensus size: 123
25359814 CCTACCCCCC
* *
25359824 CTCCTCTCTCCCTTCTCCCCCCTCTCCCCCTCCCTCCCTCCCCTCCCCTCCCCCCCTTTCTCTCC
1 CTCCTCTCTCCCTACTCCCCCCTCTCCCCCTCCCTCCCTCCCCTCCCCTCCCCCCCTCTCTCTCC
* * * *
25359889 CCTCCCCCTCCCCTCCCCCTCCCCCCTTTCCTTCCCCCCTCTCCTACCCCCCTCCCTCT
66 CCTCCCCCTCCCCT-CACCTCCCCCCCTCCCTCCCCCCCTCTCCTACCCCCCTCCCTCT
* *
25359948 CTCCTCTCCTCCCTACTCGCCCCCATC-CCTCCCTACCCTACCC-CCCCTCCCCTATCTCCCCTC
1 CTCCTCT-CTCCCTACTC-CCCCC-TCTCC-CCCT-CCCT-CCCTCCCCTCCCCT-CCCCCCCTC
*
25360011 -CTCTTTCCCTCCCCTCTCCCCT-ACCTCCCCCCCTCCCTCCCCCCCTCTCC
59 TCTC-TCCCCTCCCC-CTCCCCTCACCTCCCCCCCTCCCTCCCCCCCTCTCC
25360061 CCTACCCCTC
Statistics
Matches: 95, Mismatches: 9, Indels: 14
0.81 0.08 0.12
Matches are distributed among these distances:
124 7 0.07
125 9 0.09
126 7 0.07
127 6 0.06
128 41 0.43
129 18 0.19
130 7 0.07
ACGTcount: A:0.03, C:0.70, G:0.00, T:0.26
Consensus pattern (123 bp):
CTCCTCTCTCCCTACTCCCCCCTCTCCCCCTCCCTCCCTCCCCTCCCCTCCCCCCCTCTCTCTCC
CCTCCCCCTCCCCTCACCTCCCCCCCTCCCTCCCCCCCTCTCCTACCCCCCTCCCTCT
Found at i:25360069 original size:128 final size:122
Alignment explanation
Indices: 25359824--25360298 Score: 269
Period size: 128 Copynumber: 3.8 Consensus size: 122
25359814 CCTACCCCCC
* *
25359824 CTCCTCTCTCCCTTCTCCCCCCTCTCCCCCTCCCTCCCTCCCCTCCCCTCCCCCCCTTTCTCTCC
1 CTCCTCTCTCCCTACTCCCCCCTCTCCCCCTCCCTCCCTCCCCTCCCCTCCCCCCCTCTCTCTCC
* * * *
25359889 CCTCCCCCTCCCCTCCCCCTCCCCCCTTTCCTTCCCCCCTCTCCTACCCCCCTCCCTCT
66 CCTCCCCCTCCCCT-CACCTCCCCCCCTCCCTCCCCCCCTCTCCTA-CCCCCTCCCTCT
* *
25359948 CTCCTCTCCTCCCTACTCGCCCCCATC-CCTCCCTACCCTACCC-CCCCTCCCCTATCTCCCCTC
1 CTCCTCT-CTCCCTACTC-CCCCC-TCTCC-CCCT-CCCT-CCCTCCCCTCCCCT-CCCCCCCTC
*
25360011 -CTCTTTCCCTCCCCTCTCCCCT-ACCTCCCCCCCTCCCTCCCCCCCTCTCCCCTA-CCCCT-CC
59 TCTC-TCCCCTCCCC-CTCCCCTCACCTCCCCCCCTCCCTCCCCCCCTCT--CCTACCCCCTCCC
25360072 -C-
120 TCT
* * * * *
25360073 C-CC-C-C-CCCT-C-CCCCTC-CTCCCCCTCCC-CCCCCCCCTCTCTTACCCCCCTCTCTACTC
1 CTCCTCTCTCCCTACTCCCCCCTCTCCCCCTCCCTCCCTCCCCTCCCCTCCCCCCCTCTCT-CTC
** *
25360130 CCCTCCCCCTTCCCCCTCTTCTCCCTATCCCC-CCC-CCTCCCCCTCCCCT-CCCCTCTCCCTAC
65 CCCTCCCCC-T-CCCCTCACCTCCC---CCCCTCCCTCC-CCCCCTCTCCTACCCC-CTCCCT-C
25360192 T
122 T
* * * *
25360193 CCTTCCCCTC-CCCT-CTCCCCTCTCCCCCCCCTCTCCCCCTACTACCCCTCCCTCCTCCCTCCC
1 -C-TCCTCTCTCCCTACTCCCCCCT-CTCCCCCTC-CCTCC--CT-CCCCT-CC-CCTCCC-CCC
*
25360256 CTCTCCTCTCCCCTCCCCC-CCCTTC-CCTACCCCTCCC-CCCTCC
56 CTCT-CTCTCCCCTCCCCCTCCCCTCACCT-CCCC-CCCTCCCTCC
25360299 TCCCTTTACC
Statistics
Matches: 278, Mismatches: 25, Indels: 88
0.71 0.06 0.23
Matches are distributed among these distances:
112 11 0.04
113 20 0.07
114 9 0.03
115 16 0.06
116 6 0.02
117 16 0.06
118 5 0.02
119 2 0.01
120 4 0.01
121 2 0.01
123 3 0.01
124 10 0.04
125 16 0.06
126 14 0.05
127 8 0.03
128 52 0.19
129 20 0.07
130 14 0.05
131 6 0.02
132 5 0.02
133 13 0.05
134 1 0.00
135 4 0.01
136 19 0.07
137 2 0.01
ACGTcount: A:0.03, C:0.72, G:0.00, T:0.25
Consensus pattern (122 bp):
CTCCTCTCTCCCTACTCCCCCCTCTCCCCCTCCCTCCCTCCCCTCCCCTCCCCCCCTCTCTCTCC
CCTCCCCCTCCCCTCACCTCCCCCCCTCCCTCCCCCCCTCTCCTACCCCCTCCCTCT
Found at i:25360213 original size:188 final size:187
Alignment explanation
Indices: 25359821--25360297 Score: 455
Period size: 188 Copynumber: 2.5 Consensus size: 187
25359811 TACCCTACCC
* * *
25359821 CCCCTCCTCTCTCCCTTCTCCCCCCTCTCCCCCTCCCTCCCTCCC-CTCCCCTCCCC-CCCTTTC
1 CCCCTCCCCTCTCCCCTCTCCCCCCTCTCCCCCTCCCTCCCCCCCTCTCCCCTCCCCTCCC---C
* *
25359884 TCTCCCCT--CCCCCTCCCCTCCCCCTCCCCCCTTTCCTTCCCCCCTCTCCTACCCCCCTCCCTC
63 TCTCCCCTCCCCCCCTCCCCTCCCCC-CCCCCCTCTCCTTCCCCCCTCTCCTACCCCCCTCCCCC
*
25359947 TCTCCTCTCCTCCCTACTCGCCCCCATCCCTCCCTACCCTACCCCCCCTCCCCTATCTCCCCT
127 TCCCCTCTCCTCCCTACTCGCCCCCA-CCCTCCC-ACCCTACCCCCCCTCCCCTATCTCCCCT
* ** *
25360010 CCTCTTTCC-CTCCCCTCTCCCCTACCTCCCCCCCTCCCTCCCCCCCTCTCCCCTACCCCTCCCC
1 CCCCTCCCCTCTCCCCTCTCCCC--CCTCTCCCCCTCCCTCCCCCCCTCTCCCCT-CCCCTCCCC
* * *
25360074 CCCCCCCTCCCCCTCCTCCCCCTCCCCCCCCCCCTCT-CTTACCCCCCTCT-CTACTCCCCTCCC
63 TCTCCCCTCCCCC-CCT-CCCCTCCCCCCCCCCCTCTCCTT-CCCCCCTCTCCTACCCCCCTCCC
* *
25360137 CCTTCCCCCTCTTCTCCCTA-TC-CCCCC-CCCT-CC-CCCTCCCCTCCCCTCTCCCTA-CT-CC
125 CC-T-CCCCTCTCCTCCCTACTCGCCCCCACCCTCCCACCCTACCC-CCCCTC-CCCTATCTCCC
*
25360195 TT
186 CT
* *
25360197 CCCCTCCCCTCTCCCCTCTCCCCCCCCTCTCCCCCT-ACTACCCCTCCCTC-CTCCCTCCCCTCT
1 CCCCTCCCCTCTCCCCTCT--CCCCCCTCTCCCCCTCCCT-CCCC-CCCTCTC-CCCTCCCCTCC
* *
25360260 CCTCTCCCCTCCCCCCCCTTCCCTACCCCTCCCCCCTC
61 CCTCTCCCCT-CCCCCCCTCCCCT-CCCCCCCCCCCTC
25360298 CTCCCTTTAC
Statistics
Matches: 240, Mismatches: 26, Indels: 45
0.77 0.08 0.14
Matches are distributed among these distances:
187 22 0.09
188 73 0.30
189 26 0.11
190 35 0.15
191 7 0.03
192 28 0.12
193 26 0.11
194 23 0.10
ACGTcount: A:0.03, C:0.72, G:0.00, T:0.25
Consensus pattern (187 bp):
CCCCTCCCCTCTCCCCTCTCCCCCCTCTCCCCCTCCCTCCCCCCCTCTCCCCTCCCCTCCCCTCT
CCCCTCCCCCCCTCCCCTCCCCCCCCCCCTCTCCTTCCCCCCTCTCCTACCCCCCTCCCCCTCCC
CTCTCCTCCCTACTCGCCCCCACCCTCCCACCCTACCCCCCCTCCCCTATCTCCCCT
Found at i:25360681 original size:64 final size:64
Alignment explanation
Indices: 25360613--25360827 Score: 168
Period size: 64 Copynumber: 3.4 Consensus size: 64
25360603 CTCCCTACCC
*
25360613 CCCCCCTC-CTCCCTCTCCTCTCCCCTCCCTTCCCCCTTCCTACCCTACCCTCCTCCCCTCTTCT
1 CCCCCCTCTCTCCCTCTCCTCTCCCCCCCCTTCCCCCTTCCTACCCTACCC-CCTCCCCTCTTCT
* * *
25360677 -CCCCCTCTCTCCC-CTCCCCCTCCCCCCCCTCCCCTCCTTACT-CCCTACCCCC-CCTTCCTCT
1 CCCCCCTCTCTCCCTCT-CCTCTCCCCCCCCTTCCC-CCTTCCTACCCTACCCCCTCC--CCTCT
25360738 TC-
62 TCT
* *
25360740 CCCCACCTCTCTTCCTCT-CT-TCCCCCCCCTCTCCTCCC-TCCTTACCCTCCCCCCTACCCC-C
1 CCCC-CCTCTCTCCCTCTCCTCTCCCCCCCCT-TCC-CCCTTCC-TACCCTACCCCCT-CCCCTC
25360801 --CT
61 TTCT
* * *
25360803 -CCCTCTCTCCCCCCCTCCTCTCCCC
1 CCCCCCTCTCTCCCTCTCCTCTCCCC
25360828 TCCTCCCCTC
Statistics
Matches: 121, Mismatches: 13, Indels: 35
0.72 0.08 0.21
Matches are distributed among these distances:
61 9 0.07
62 8 0.07
63 28 0.23
64 45 0.37
65 27 0.22
66 2 0.02
67 2 0.02
ACGTcount: A:0.03, C:0.70, G:0.00, T:0.27
Consensus pattern (64 bp):
CCCCCCTCTCTCCCTCTCCTCTCCCCCCCCTTCCCCCTTCCTACCCTACCCCCTCCCCTCTTCT
Found at i:25360954 original size:84 final size:81
Alignment explanation
Indices: 25360761--25364440 Score: 348
Period size: 82 Copynumber: 44.2 Consensus size: 81
25360751 TTCCTCTCTT
* *
25360761 CCCCCCCCT-CTCCTCCCTCCTTACCCTCCCCCCTACCCCCCTCCCTCTCTCCCCCCCTCCTCTC
1 CCCCCCCCTCCTCCTCCC-CCCTCCCCTCCCCCCTACCCCCCTCCCTCTCTCCCCCCCTCCTCTC
25360825 CCCTCCTCCCCTCTCCC
65 CCCTCCTCCCCTCTCCC
* * * * * *
25360842 ACCCCTCCTAACCTCCTCCTCTCC-CCCCTCCTCCTTACCCCCC-CTCCTCCTCTCCCTCCCTCC
1 CCCCCCCCT--CCTCCTCC-CCCCTCCCCTCCCCCCTACCCCCCTC-CCT-CTCTCCCCCCCTCC
25360905 TCTCCCTCCTCCCTCCCC-CTCCC
61 TCT-CC-CCT-CCTCCCCTCTCCC
* * * ***
25360928 CCCCCCCCTCCTTCTCCCCCCTCCCCTCTCCCTCT-CCCTCCTCCCTC-C-CCTTACCTCC-CTT
1 CCCCCCCCTCCTCCTCCCCCCTCCCCTC-CCCCCTACCCCCCTCCCTCTCTCCCCCCCTCCTC-T
25360989 CCCCTCC-CCCCT-TCCC
64 CCCCTCCTCCCCTCTCCC
* * * * *
25361005 TCCCTTACCTCCCCCCCCCTCCCTACCTCTCCCTCTCCCCCTAACCTCCCTCCCTCTC-CTCTCC
1 -CCC---CC-CCCTCCTCCTCCC-CCCTC-CCCTC-CCCCCT-ACCCCCCTCCCTCTCTC-CCCC
* * *
25361069 CCT-CTC-CCCCCCCT-TCCTCT-TC
56 CCTCCTCTCCCCTCCTCCCCTCTCCC
* * * * * * *
25361091 CTCCTCCCTACTCTTCCCCCCTCTCTCTCTCCTCCCTCCCCCCCTCCCCTTAATCCTCCCCCCCT
1 CCCCCCCCTCCTCCTCCCCCCTC-C-C-CTCCCCCCTACCCCCCT-CCC-T-CT-CTCCCCCCCT
* **
25361156 CC-CTTTCCC-CCTCCTCCTACT-AA
59 CCTC-TCCCCTCCTCC-CCT-CTCCC
*** * * *
25361179 CCCCTTTCTCCCTCTTCCCCCC-CCCCTCCTCCCCT-CCCCCC-CCCTCCCTCCCCTCCTCCCCT
1 CCCCCCCCT-CCTCCTCCCCCCTCCCCTCC-CCCCTACCCCCCTCCCTCTCTCCCC-CC-CTCCT
25361241 CTTCCCCTCCTCCCCTCCTCCC
62 C-TCCCCTCCTCCCCT-CTCCC
* * *
25361263 CCCCCTTTACCTCTACCTCCTTCCCCCC-CCCC-CTCACCT-CCCCCCGCCCTCTC-CCCCTCCC
1 CCCCC----CC-CT-CCTCC-TCCCCCCTCCCCTCCCCCCTACCCCCCTCCCTCTCTCCCC-CCC
* *
25361324 TCC-CTCCTCTCCTTCCCTC-CCTTTC
58 TCCTCTCCCCTCCTCCCCTCTCC---C
* * * * * * * *
25361349 TCGCCCTTCCCTACCTCCCTTCCCCCTTCTCT-CTCCTTACCCCCC-CCC-CTAATCCCCTCCTA
1 -C-CCC-CCCCT-CCT-CCTCCCCCCTCCCCTCCCCCCTACCCCCCTCCCTCT-CTCCCCCCCT-
* * * *
25361411 CCCCCCCCCTCCTCCCCCCTCCT
59 CCTCTCCCCTCCTCCCCTCTCCC
* *** * * * * *
25361434 CTCTTACTTCC-CCTCTCCCCT-CCC-CCCCCCTACCCCCCTCCCCCCCCCCCTCCCCTCTCTCT
1 CCCCCCCCTCCTCCTCCCCCCTCCCCTCCCCCCTACCCCCCTCCCTCTCTCCC-CCCCTC-CTCT
**
25361496 CTACTACC-CCCCTCT-CC
64 CCCCT-CCTCCCCTCTCCC
* * * * * *
25361513 CTCTCCCGTCCTCCT-CCCCTTCCCTCTCCCCACCT-CTCCCCTCCCTC-C-CCGCCCCTCCTAC
1 CCCCCCCCTCCTCCTCCCCCCTCCC-CTCCCC-CCTACCCCCCTCCCTCTCTCCCCCCCTCCT-C
*
25361574 TTCTCC-CCTCCCTCTCTCCC
63 -TCCCCTCCTCCC-CTCTCCC
* ** * * * ** *
25361594 CTCTTCTCTCCCCCTCTCCCCTCTCTGGCTTCTCCCCCCT-CTACCCTCCCCCTCTACCCCCCCT
1 CCCCCCCCTCCTCCTC-CCCC-CTC---C-CCTCCCCCCTACCCCCCTCCCTCTCT-CCCCCCCT
*
25361658 ACC-C-CCCCTCCCCTCCCTCCTCTTCC
59 -CCTCTCCCCT--CCT-CC-CCTCTCCC
* * * *
25361684 CCCCCCCC-CCT-CTACTCTCCCTCCCCT--CCTCTACCTCTCCCGCCC-C-CTCCCCCTCTCCT
1 CCCCCCCCTCCTCCT-C-CCCCCTCCCCTCCCCCCTACC-C-CCCTCCCTCTCTCCCCCCCTCCT
*
25361743 C-CCCCATCCTTCCC-C-CCC
62 CTCCCC-TCCTCCCCTCTCCC
* * * *
25361761 CCCTCCCCTCCTCC-CCCCTCCCCCCCTACCCCCTCCTCCCCTCTCCCCTCTCTCCCCCCTCTAC
1 CCCCCCCCTCCTCCTCCCC-CCTCCCCTCCCCCCTAC-CCCC-CT-CCCTCTCTCCCCCC-CT--
* * *
25361825 CCCCCTCCCCCCCTCTCCCCTCTCCTT
59 -CCTCT-CCCCTC-CTCCCCTCTCC-C
* * * * * *
25361852 CACCCCCCTCCTCCTACCCTCTTCCCTCCTCCTCCCT-CCCCCC-CCC-CCCTACCCCTCCCTAG
1 CCCCCCCCTCCTCCT-CCCCCCT-CC-CCTCCCCCCTACCCCCCTCCCTCTCT-CCCC-CCCT-C
*
25361914 C-CGCCCCTCCTCCCCTCTCCC
60 CTCTCCCCTCCTCCCCTCTCCC
* * *
25361935 CCTCCCCCCTTCCT-CTCCTCGCCCTCCCCTCCCTCCTCCCACCTCCTCCCTCCCTACCCCCCCT
1 CC-CCCCCC-TCCTCCTCC-C-CCCTCCCCTCCCCCCTACC-CC-CCTCCCTCTCT-CCCCCCCT
*
25361999 CCTCCTCTCCTTCCTCCCC-C-CCC
59 CCT-CTC-CCCTCCTCCCCTCTCCC
* * * *
25362022 TTTTCCCCCCC-CCTCCTCCCCCCT-ACCTACCTCC--CCCCCCTACCC-CTCTCCCTACCCC-C
1 ---CCCCCCCCTCCTCCTCCCCCCTCCCCTCCCCCCTACCCCCCT-CCCTCTCTCCC--CCCCTC
**
25362081 CT-TCGTCT-C-CCCCTCTCCC
60 CTCTCCCCTCCTCCCCTCTCCC
** * * * * *
25362100 CCCTACCCT-CTTCTCCCCCCCTCCCCTTCCCCCTCCCCCCCTCCCCCTCTCCCCCTCTCCTC-C
1 CCCCCCCCTCCTCCT-CCCCCCTCCCCTCCCCCCTACCCCCCTCCCTCTCTCCCCCCCTCCTCTC
* *
25362163 CCCTCCTCCCCCCTCTC
65 CCCTCCTCCCCTCTCCC
* * * * *
25362180 CCTCTCCCT-CTCCCCCCTCCCTCCTCCTACCCCCCT-CCCCCC-CACTC-CT-CCCTCCTCCTT
1 CCCCCCCCTCCTCCTCCC-CCCTCC-CCT-CCCCCCTACCCCCCTCCCTCTCTCCCCCCCTCC-T
*
25362240 CCCCCGCTCCTCTCCCTCTCCTC
62 CTCCC-CTCCTC-CCCTCTCC-C
* * * *
25362263 ACTCCTCCCT-CTCC-CCCTCCTCCCCCTCCCCTCTACCTCCCC-CCC-C-CTCCCCCCC-CC-C
1 -CCCCCCCCTCCTCCTCCCCCCT-CCCCTCCCCCCTACC-CCCCTCCCTCTCTCCCCCCCTCCTC
*
25362321 TCCTCC-CCTCTCC-CTCCC
63 TCC-CCTCCTCCCCTCTCCC
*** * ** * *
25362339 CCCCCCCCT-CT-CTCCCTTATTCCCT-CTACCTACTCTCCCCTCCC-CTCTCCCCCCTTCCCCT
1 CCCCCCCCTCCTCCTCCCCCCTCCCCTCCCCCCTAC-C-CCCCTCCCTCTCTCCCCCCCTCCTCT
25362400 CACCCTCCCTATCCCCCCTCTCCTC
64 C-CCCT-CC--T--CCCCTCTCC-C
* * *
25362425 CCTCTCCCT-CTCCTCCCCCCCTCCCC-CCTCCCTTTACCCTCCCTCCCCCTCTACCCTCCCCCC
1 CCCCCCCCTCCTCCT-CCCCCCTCCCCTCC-CCC-CTACCC-CCCT--CCCTCT---CTCCCCCC
* *
25362488 CCCCTTCTCCCC-CCTCCGCTACCTCCC
57 CTCC-TCTCCCCTCCTCCCCT--CTCCC
* * * * * **
25362515 CCCCCCCC-CCTCCTCCCCCCCTTCCCTCCCTCTTTCTACCTATCCC-C-C-CCCCTTCCCTCC-
1 CCCCCCCCTCCTCCT-CCCCCCTCCCCTCCCCCCTAC-CCCCCTCCCTCTCTCCCC--CCCTCCT
* * *
25362575 C-CCCATTACTCCCCCCTCCC
62 CTCCC-CTCCTCCCCTCTCCC
* * * * *
25362595 CCTCCTCCCTCTTCC-CCCCCCTCTCCTACCCTCTCCTA--CCCCTACCC-CTCCCCTCCCCCTA
1 CC-CCCCCCTCCTCCTCCCCCCTCCCCT-CCC-C-CCTACCCCCCT-CCCTCTCTCC-CCCCCTC
* *
25362656 CTCTCCCC-CCGACCCTCACTCCC
60 CTCTCCCCTCC-TCCC-CTCTCCC
* * * *
25362679 CCCTCCTCCCTCC-CCTCCCCCTCCCCCTCCTCCCTCCCTCCCCCCTCTCCCCCTCTCCCCTCC-
1 CCC-CC-CCCTCCTCCT-CCCC-CCTCC-CCTCCC-CCCTACCCCC-CTCCCTCTCTCCCCCCCT
* * *
25362742 CCTCGGCCCC-CCTACCCTCTACC
59 CCTC-TCCCCTCCTCCCCTCTCCC
* * * * * *
25362765 CCCCCCCCTCC-CCT--CCCCT-CCCTCTCCCCT-CTCCCCTCCCTC-C-CTCTCCCTCTTCTAC
1 CCCCCCCCTCCTCCTCCCCCCTCCCCTCCCCCCTACCCCCCTCCCTCTCTCCCCCCCTCCTCTCC
25362823 CCTCCTCGTCCCATC-CCC
66 CCTCCTC--CCC-TCTCCC
* * ** ** *** *
25362841 CCTCCTCCTAATAATCTTACCTACCCCTCCCCCC--CCTCCCTCTCCCCCTC-CCCTACCCCTCC
1 CCCCCCCCTCCTCCTCCCCCCT-CCCCTCCCCCCTACC-CCC-CTCCCTCTCTCCC--CCCCT-C
* *
25362903 CTTCTCCCTCTCCCTCCCTTCGCTTCCT
60 C-TCTCCC-CT-CCTCCC--CTC-TCCC
* * * *
25362931 CCCTCCTCTCTCTCC-CCTCTCCCTCCCCTCCCCTCCCT-CCCCCCTCCCCCTCCCCCCCCCCTC
1 CCCCCCCCTC-CTCCTCC-C-CCCTCCCCT-CCC-CCCTACCCCCCTCCCTCT-CTCCCCCCCTC
*
25362994 CTCT-CCCTCTCTCTCCTCTCCC
60 CTCTCCCCTC-CTCCCCTCTCCC
* * * * * *
25363016 CCCCCCCCTCTTCCTACTCCCTCTCCTTCCCCCTCT-CCCCCCTCCC-CTCCTCTCCCTCTCC-C
1 CCCCCCCCTCCTCCTCCCCCCTC-CCCTCCCCC-CTACCCCCCTCCCTCT-CTCCCCCCCTCCTC
*
25363078 TACCCTCC-CCTCC-C-CCC
63 TCCCCTCCTCC-CCTCTCCC
* ** * * * *
25363095 CCCTCCCCTCCTCTCTTACCCCTCCCCTCCCTTCCTTCTCACCTACTCACTCTCCTCTCCCTCCC
1 CCCCCCCCTCCTC-CTCCCCCCTCCCCTCCC-CCCTAC-C-CC-CCTC-C-CT-CTCTCCCCCCC
25363160 -CCTCT-CCC-CC-CCCCTCTCCC
58 TCCTCTCCCCTCCTCCCCTCTCCC
* * * * ** * *
25363180 CCCTCACCTCCTCCCCCCTCCCTACTCCTCCCCCCCCCCCCTCCCTCCCCCTACTCTCCCCC-CC
1 CCCCCCCCTCCTCCTCCC-CCCT-CCCCT-CCCCCCTACCC-CCCTCCCTCT-CTCCCCCCCTCC
*
25363244 TCT-CCCTCCT-CCCTC-CGTC
61 TCTCCCCTCCTCCCCTCTC-CC
* * * * * * *
25363263 CTCCCCCCTCCTAC-CCCTCCTCTCCCT-CCCCCTCCCCCCCTTCGTTTCTCCCTCTCCCCTCCC
1 CCCCCCCCTCCTCCTCCCCCCTC-CCCTCCCCCCTACCCCCCTCCCTCTCT-CC-C-CCCCT-CC
* *
25363326 TATTCCTCCTTCCTCCCTTCCTCCTC
61 T-CTCC-CC-TCCTCCCCT-CTCC-C
* * * * *
25363352 CCTCCCCCT-CTCTCTCCGCTCCCCCCCCTCCCCCCCTTCCGCCC-CCCTC-CTATCCCCCCTCC
1 CCCCCCCCTCCTC-CTCC-C-CCCTCCCCT-CCCCCCTACCCCCCTCCCTCTCT-CCCCCCCTCC
25363414 -CTCCCCTCTCTCCCTCTCTCTCC
61 TCTCCCCTC-CTCCC-CTCTC-CC
* * * *
25363437 CTCTCCCTCCTCCT-CTCCCCCCTCTACTCCTCCTCTCTACTCCCCCTCCCTCCTCTACCCCTCC
1 C-C-CCCCCCTCCTCCTCCCCCCTC--C-CCTCCCCCCTAC-CCCCCTCCCT-CTCT-CCCCCCC
25363501 TCC-CTCCTCCTCCCTCCCTACTCTCTCTC
58 TCCTCTCC-CCT-CCTCCC--CTCTC-C-C
* * * * *
25363530 CTCCCTCCTCC-CCTCCTCCCC-CCCCTCCTCCTCTTCTCTCCCC-CCC-CTAC-CCTCCCCCTA
1 CCCCCCCCTCCTCCTCC-CCCCTCCCCTCC-CCCCTAC-C-CCCCTCCCTCT-CTCC-CCCCCTC
*
25363590 C-CTCCCCTCTCTCTCCCT-TCCT
60 CTCTCCCCTC-CTC-CCCTCTCCC
* * * *
25363612 CCCTCCCCTCC-CTTCCCCCCTCCCCCTCCCTCCCT-CCCTTCCCTCTCCTCCCTCCCCTCCCCC
1 CCCCCCCCTCCTCCTCCCCCCT-CCCCTCCC-CCCTACCC--CCCTC-CCTCTCTCCCC-CCCTC
* * *
25363675 CCCTCTCCCTCCTCCCCCCTACC
60 CTCTC-CCCTCCTCCCCTCTCCC
* * * * * * * *
25363698 CTCTCCTCTCCTCTTCCCCCCT-CCCTCCTCTCTCCCCTCCCTACCCCTCTTTCCCCCCCCTACC
1 CCCCCCCCTCCTCCTCCCCCCTCCCCTCCCCCCTACCC-CCCT--CCCTCTCT-CCCCCCCT-CC
** *
25363762 TCTCCTTTTTCCTCCCCTCCCCC
61 TCTCC--CCTCCTCCCCTCTCCC
* *
25363785 TCCCCCTCCCTCCCTCCTGTCCCCCC-CCCCTCCTCCCCCTCCCCTCCCCCTCCCTTTACTCCCC
1 -CCCCC-CCCT-CCTCC--TCCCCCCTCCCCT-C-CCCCCT--AC-CCCCCTCCCTCT-CT-CCC
* *
25363849 TCCCCTTCCCCCCCCCTCTCCTCCCCTTCCTCCC
54 -CCCC-T-CCTCTCCC-CTCCTCCCC-T-CTCCC
* **** * * * * *
25363883 CCCCCACCT-CTCCT-CTTTATCACC-CCCCCTTACCCCCC-CCCT-ACTCCTCTCCTCCT-TCC
1 CCCCCCCCTCCTCCTCCCCCCTCCCCTCCCCCCTACCCCCCTCCCTCTCTCCCCCCCTCCTCTCC
*
25363942 CCTCC-ACCC-C-CCC
66 CCTCCTCCCCTCTCCC
* * * * * *
25363955 CGCCCTCC-CCTCC-CCCCCTTCCTCTCCCCTCT-CTCCCCTACCTCTCCTCTCCCCCCCTCC-C
1 CCCCCCCCTCCTCCTCCCCCCTCCCCTCCCCCCTACCCCCCT-CC-CT-CTCTCCCCCCCTCCTC
25364016 -CCCC-CC-CCCTCTCATCCC
63 TCCCCTCCTCCC-CTC-TCCC
* **** * * * *
25364034 CCCTTACTCCCTCC-CC-CCCCCCTCCCCTTTTTCCT-CTCCCCTCCCTCTC-CTCCGCC-CCTG
1 CCC---CCCCCTCCTCCTCCCCCCTCCCCTCCCCCCTACCCCCCTCCCTCTCTCCCCCCCTCCTC
* *
25364094 TCCCC-CCT-CTCT-TTCC
63 TCCCCTCCTCCCCTCTCCC
* * * * *
25364110 CCCCCTCCTCCCCCT-CCTCTTCTCCC-CCCCCCT-CCCTCCT-CCTCCTTCTCCCCCCC-CCTC
1 CCCCCCCCTCCTCCTCCCCCCTC-CCCTCCCCCCTACCCCCCTCCCT-C-TCTCCCCCCCTCCTC
*
25364170 CCCCCGTCCTCCTACCTAC-CCC
63 TCCCC-TCCTCC--CCT-CTCCC
* * * * *
25364192 TACCTTCCCCCTTCT-CTCACCCCC-CCCCT-CCTCCT--CCTCCTCCCCCTCTCCCCCCC-CCT
1 --CC-CCCCCCTCCTCCTC-CCCCCTCCCCTCCCCCCTACCCCCCTCCCTCTCTCCCCCCCTCCT
*
25364251 CTCCCC-CC-CTCC-CT-CC
62 CTCCCCTCCTCCCCTCTCCC
* * * * *
25364267 TCCCCTCCTCCTCCTACCCCCTACTCTCCCTCCCCCTTCCCTCTCCCCTCCCTCTCTCCCCTCC-
1 CCCCCCCCTCCTCCT-CCCCC--CTC-CCCTCCCCCCT-AC-C-CCCCTCCCTCTCTCCCCCCCT
* *
25364331 CCTCCCCCCCCCTCTCCC-CTCCC
59 CCTCTCCCCTCCTC-CCCTCTCCC
* ** * * *
25364354 CCCTCCCCT-CTCCTCCCCTATCCCCTCCCCCC--CTCCTCTCCC-CTC-CCCCCCCTCC-CCCC
1 CCCCCCCCTCCTCCTCCCCCCTCCCCTCCCCCCTACCCCCCTCCCTCTCTCCCCCCCTCCTCTCC
*
25364413 CCCCCTCCCC-CTCCC
66 CCTCCTCCCCTCTCCC
* *
25364428 CCCCTCTCTCCTC
1 CCCCCCCCTCCTC
25364441 TAATCAAGTC
Statistics
Matches: 2634, Mismatches: 524, Indels: 888
0.65 0.13 0.22
Matches are distributed among these distances:
72 29 0.01
73 34 0.01
74 51 0.02
75 68 0.03
76 70 0.03
77 82 0.03
78 84 0.03
79 136 0.05
80 143 0.05
81 151 0.06
82 236 0.09
83 200 0.08
84 213 0.08
85 194 0.07
86 201 0.08
87 150 0.06
88 128 0.05
89 131 0.05
90 97 0.04
91 63 0.02
92 58 0.02
93 29 0.01
94 26 0.01
95 18 0.01
96 24 0.01
97 14 0.01
98 4 0.00
ACGTcount: A:0.03, C:0.71, G:0.01, T:0.25
Consensus pattern (81 bp):
CCCCCCCCTCCTCCTCCCCCCTCCCCTCCCCCCTACCCCCCTCCCTCTCTCCCCCCCTCCTCTCC
CCTCCTCCCCTCTCCC
Found at i:25361094 original size:78 final size:73
Alignment explanation
Indices: 25360900--25361094 Score: 181
Period size: 78 Copynumber: 2.6 Consensus size: 73
25360890 CCTCTCCCTC
* *
25360900 CCTCCTCTCCCTCCTCC-CTCCCC-CTCCCCCCCC-CCC-TCCTTCTCCCCCCTCCCCTCTCCCT
1 CCTCC-CTCCCT-CTCCTCTCCCCTCTCCCCCCCCTCCCTTCCTCCCCCCCCCTCCCCTCTCCCT
*
25360961 CTCCCTCCTC
64 CTCCCTCCTA
*
25360971 CCTCCCCTTACCTC-CCT-TCCCCTC-CCCCCTTCCCTCCCTTACCTCCCCCCCCCTCCCTACCT
1 CCT-CCC-TCCCTCTCCTCTCCCCTCTCCCCC--CCCTCCCTT-CCTCCCCCCCCCT-CC--CCT
25361033 CTCCCTCTCCC-CCTAA
58 CTCCCTCTCCCTCCT-A
25361049 CCTCCCTCCCTCTCCTCTCCCCTCTCCCCCCCCTTCCTCTTCCTCC
1 CCTCCCTCCCTCTCCTCTCCCCTCTCCCCCCCC-TCC-CTTCCTCC
25361095 TCCCTACTCT
Statistics
Matches: 101, Mismatches: 5, Indels: 29
0.75 0.04 0.21
Matches are distributed among these distances:
70 12 0.12
71 6 0.06
72 9 0.09
73 3 0.03
74 1 0.01
75 11 0.11
76 7 0.07
77 12 0.12
78 32 0.32
79 8 0.08
ACGTcount: A:0.03, C:0.71, G:0.00, T:0.27
Consensus pattern (73 bp):
CCTCCCTCCCTCTCCTCTCCCCTCTCCCCCCCCTCCCTTCCTCCCCCCCCCTCCCCTCTCCCTCT
CCCTCCTA
Found at i:25361508 original size:61 final size:67
Alignment explanation
Indices: 25361389--25361519 Score: 170
Period size: 61 Copynumber: 2.0 Consensus size: 67
25361379 CTCTCCTTAC
*
25361389 CCCCCCCCCTAATCCCCTCCTACCCCCCCCCTCCTCCCCCCTCCTCTCTTACTTCCCCTCTCCC-
1 CCCCCCCCCTAATCCCCTCCTACCCCCCCCCTCCTCCCCCCTCCTCTCTTACTCCCCCTCTCCCT
25361453 CT
66 CT
*
25361455 CCCCCCCCCT-A-CCCC-CCT-CCCCCCCCC-CCTCCCCTCT-CTCTC-TACTACCCCCCTCTCC
1 CCCCCCCCCTAATCCCCTCCTACCCCCCCCCTCCTCCCCCCTCCTCTCTTACT--CCCCCTCTCC
25361513 CTCT
64 CTCT
25361517 CCC
1 CCC
25361520 GTCCTCCTCC
Statistics
Matches: 60, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
59 4 0.07
60 5 0.08
61 19 0.32
62 14 0.23
63 3 0.05
64 4 0.07
65 1 0.02
66 10 0.17
ACGTcount: A:0.05, C:0.73, G:0.00, T:0.22
Consensus pattern (67 bp):
CCCCCCCCCTAATCCCCTCCTACCCCCCCCCTCCTCCCCCCTCCTCTCTTACTCCCCCTCTCCCT
CT
Found at i:25362017 original size:23 final size:23
Alignment explanation
Indices: 25361976--25362067 Score: 69
Period size: 24 Copynumber: 3.8 Consensus size: 23
25361966 CCTCCTCCCA
25361976 CCTCCTCCCTCCCTACCCCCCCT
1 CCTCCTCCCTCCCTACCCCCCCT
* *
25361999 CCTCCTCTCCTTCCTCCCCCCCCT
1 CCTCCTC-CCTCCCTACCCCCCCT
** * *
25362023 TTTCC-CCCCCCCTCCTCCCCCCT
1 CCTCCTCCCTCCCTAC-CCCCCCT
*
25362046 ACCTACCTCCCCCCCCTACCCC
1 -CCT-CCT-CCCTCCCTACCCC
25362068 TCTCCCTACC
Statistics
Matches: 54, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
22 7 0.13
23 15 0.28
24 18 0.33
25 2 0.04
26 3 0.06
27 9 0.17
ACGTcount: A:0.04, C:0.73, G:0.00, T:0.23
Consensus pattern (23 bp):
CCTCCTCCCTCCCTACCCCCCCT
Found at i:25362030 original size:135 final size:136
Alignment explanation
Indices: 25361738--25362072 Score: 302
Period size: 139 Copynumber: 2.4 Consensus size: 136
25361728 CCCTCCCCCT
*
25361738 CTCCTCCCCCATCCTTCCCCCCCCCCTCCCCTCCTCCCCCCTCCCCCCCTACCCCCTCCTCCCCT
1 CTCCTCCCCC--CTTTCCCCCCCCCCTCCCCTCCTCCCCCCTCCCCCCCTACCCCCTCCTCCCCT
*
25361803 CTCCCCTCTCTCCCCCCTCTACCCCCCTCCCCCCCTCTCCCCTCTCCTTCACCCCCCTCCTCCTA
64 CTCCCCTCTCTCCCCCCTC-ACCCCCCTCCCCCCCTCTCCCCTCTCCTACACCCCCCTCCTCCTA
25361868 CCCTCTTCC
128 CCCTCTTCC
* **
25361877 CTCCTCCTCCCTCCCCCCCCCCCCTACCCCTCCCTAGCCGCCCCTCCTCCCCTCT-CCCCCTCC-
1 CTCCTCCCCCCTTTCCCCCCCCCCT-CCCCT-CCT--CC-CCCCTCC-CCCC-CTACCCCCTCCT
* *
25361940 CCCCT-TCCTCTC-CT-CGCCCTC-CCCTCCCTCCTCCCACCTC-CTCCCTC-CCTAC-CCCCCC
59 CCCCTCTCCCCTCTCTCCCCCCTCACCC-CCCTCC-CCC-CCTCTC-CCCTCTCCTACACCCCCC
*
25361998 TCCTCCT-CTC-CTT-C
120 TCCTCCTACCCTCTTCC
**
25362012 CTCC-CCCCCCTTTTCCCCCCCCCTCCTCCCC-CCTACCTACCTCCCCCCCCTACCCCTCTCC
1 CTCCTCCCCCC-TTT-CCCCCCCC-CCTCCCCTCCT-CCCCCCT-CCCCCCCTACCCC-CTCC
25362073 CTACCCCCCT
Statistics
Matches: 165, Mismatches: 14, Indels: 40
0.75 0.06 0.18
Matches are distributed among these distances:
131 2 0.01
132 11 0.07
133 8 0.05
134 8 0.05
135 6 0.04
136 15 0.09
137 20 0.12
138 24 0.15
139 26 0.16
140 11 0.07
141 8 0.05
142 12 0.07
143 12 0.07
144 2 0.01
ACGTcount: A:0.04, C:0.73, G:0.01, T:0.23
Consensus pattern (136 bp):
CTCCTCCCCCCTTTCCCCCCCCCCTCCCCTCCTCCCCCCTCCCCCCCTACCCCCTCCTCCCCTCT
CCCCTCTCTCCCCCCTCACCCCCCTCCCCCCCTCTCCCCTCTCCTACACCCCCCTCCTCCTACCC
TCTTCC
Found at i:25362380 original size:147 final size:144
Alignment explanation
Indices: 25362122--25362496 Score: 321
Period size: 146 Copynumber: 2.6 Consensus size: 144
25362112 CTCCCCCCCT
* *
25362122 CCCCT-TCCCCCTCC-CCCCCTCCCCCT-CTCCCCCTCTCCTCCCCCTCCTCCCCCCTCTCCCTC
1 CCCCTCTCCCCCTCCTCCCCCTCCCCCTCCTCCCCC-CCCCTCCCCC-CC-CCCTCCTC-CCCTC
* *
25362184 TCCCTCTCCCCCCTCCCTC-CTCCTACCCCCCTCCCCCCCACTCCTCCCTCCTCCT-TCCCCCGC
62 TCCCTC-CCCCCCCCCCTCTCTCCTACCCCCCTCCCACCCACTCCTCCCTCC-CCTCTCCCCC-C
*
25362247 -T--CCTCTCCCTCTCCTCACTCC
124 TTCCCCTCACCCTC-CCT-A-TCC
*
25362268 TCCCTCTCCCCCTCCTCCCCCTCCCCTCTACCTCCCCCCCCCTCCCCCCCCCCTCCTCCCCTCTC
1 CCCCTCTCCCCCTCCTCCCCCTCCCC-CT-CCTCCCCCCCCCTCCCCCCCCCCTCCTCCCCTCTC
** * *
25362333 CCTCCCCCCCCCCCTCTCTCCCTTA-TTCCCT-CTACCTACT-CTCCCCTCCCCTCTCCCCCCTT
64 CCTCCCCCCCCCCCTCTCT-CC-TACCCCCCTCCCACCCACTCCT-CCCTCCCCTCTCCCCCCTT
25362395 CCCCTCACCCTCCCTATCC
126 CCCCTCACCCTCCCTATCC
*** *
25362414 CCCCTCTCCTCCCT-CTCCCTCTCCTCCCCC-CCTCCCCCCTCCCTTTACCCTCCCT-C-CCCCT
1 CCCCTCTCC-CCCTCCT-CC-C-CCTCCCCCTCCTCCCCCC-CCCTCCCCCCCCCCTCCTCCCCT
*
25362475 CTACCCTCCCCCCCCCCTTCTC
61 CT-CCCTCCCCCCCCCCCTCTC
25362497 CCCCCTCCGC
Statistics
Matches: 194, Mismatches: 16, Indels: 38
0.78 0.06 0.15
Matches are distributed among these distances:
145 7 0.04
146 62 0.32
147 59 0.30
148 28 0.14
149 22 0.11
150 9 0.05
151 7 0.04
ACGTcount: A:0.03, C:0.72, G:0.00, T:0.25
Consensus pattern (144 bp):
CCCCTCTCCCCCTCCTCCCCCTCCCCCTCCTCCCCCCCCCTCCCCCCCCCCTCCTCCCCTCTCCC
TCCCCCCCCCCCTCTCTCCTACCCCCCTCCCACCCACTCCTCCCTCCCCTCTCCCCCCTTCCCCT
CACCCTCCCTATCC
Found at i:25362527 original size:102 final size:103
Alignment explanation
Indices: 25362311--25362532 Score: 219
Period size: 102 Copynumber: 2.2 Consensus size: 103
25362301 CCCCCCCCCT
* *
25362311 CCCCCCCCCCT-CCTCCCCTCTCCCTCCCCCCCCCCCTCTCTCCCTTATTCCCTCTACCTACTCT
1 CCCCCCCCCCTCCCTCCCCTCTCCCTCCCCCCCCCCCTCTCTCCCTTATACCCTCTACCCACTCT
* * * *
25362375 CCCCTCCCCTCTCCCCCCTTCCCCTCACCCTCCCTATC
66 ACCCTCCCCTCTCCCCCCTTCCCCCCACCCTACCTACC
* * *
25362413 CCCCCTCTCCTCCCTCTCCCTCT-CCTCCCCCCCTCCCC-C-CTCCCTT-TACCCTCCCT-CCCC
1 CCCCCCCCCCTCCCTC-CCCTCTCCCTCCCCCCC-CCCCTCTCTCCCTTATACCCT--CTACCCA
* * *
25362473 CTCTACCCTCCCC-C-CCCCCTTCTCCCCCCTCCGCTACCTCCC
62 CTCTACCCTCCCCTCTCCCCCCT-TCCCCCCACC-CTACCTACC
25362515 CCCCCCCCCCT-CCTCCCC
1 CCCCCCCCCCTCCCTCCCC
25362533 CCCTTCCCTC
Statistics
Matches: 99, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
100 9 0.09
101 18 0.18
102 45 0.45
103 17 0.17
104 10 0.10
ACGTcount: A:0.04, C:0.73, G:0.00, T:0.23
Consensus pattern (103 bp):
CCCCCCCCCCTCCCTCCCCTCTCCCTCCCCCCCCCCCTCTCTCCCTTATACCCTCTACCCACTCT
ACCCTCCCCTCTCCCCCCTTCCCCCCACCCTACCTACC
Found at i:25362546 original size:146 final size:141
Alignment explanation
Indices: 25362089--25362546 Score: 303
Period size: 147 Copynumber: 3.2 Consensus size: 141
25362079 CCCTTCGTCT
* * * *
25362089 CCCCCTCTCCCCCCTACCCTCTTCTCCCCCCCTCCCCT-TCCCCCTCC-CCCCCTCCCC-CT--C
1 CCCCCTCTCCCCCCTTCCCTC-CCT-CACTCCT-CCCTATCCCCCTCCTCCCCCTCCCCTCTACC
* * *
25362149 TCCCCCTCTCCTCCCCCTCCTCCCCCCTCTCCCTCTCCCTCTCCCCCCTCCCTC-CT-CCT-AC-
63 TCCCCC-CCCCTCCCCC-CC-CCCTCCTC-CCCTCTCCCTC-CCCCCCCCCCTCTCTCCCTCACT
* **
25362210 CCCCCT-CCCCCCCACTCCTCC
123 CCCGCTACCTACCC-C-CC-CC
* *
25362231 CTCCTCCTTCCCCCGCTCCTCTCCCTCTCCTCACTCCTCCCTCTCCCCCTCCTCCCCCTCCCCTC
1 C-CC-CC-TCTCCC-C-CCT-TCCCTC-CCTCACTCCTCCCTATCCCCCTCCTCCCCCTCCCCTC
* *
25362296 TACCTCCCCCCCCCTCCCCCCCCCCTCCTCCCCTCTCCCTCCCCCCCCCCCTCTCTCCCTTATTC
59 TACCTCCCCCCCCCTCCCCCCCCCCTCCTCCCCTCTCCCTCCCCCCCCCCCTCTCTCCCTCACTC
* * *
25362361 CCTCTACCTACTCTCCCC
124 CCGCTACCTACCCCCCCC
*
25362379 TCCCCTCTCCCCCCTT--C-CCCTCAC-CCTCCCTATCCCCC-CTCTCCTCCCTCTCCCTCT-CC
1 CCCCCTCTCCCCCCTTCCCTCCCTCACTCCTCCCTATCCCCCTC-CTCC-CCCTC-CCCTCTACC
25362438 TCCCCCCCTCC-CCCCTCCCTTTACCCTCCCTCCCCCTCTACCCT-CCCCCCCCCCT-TCTCCC-
63 TCCCCCCC-CCTCCCC-CCC----CCCT-CCT-CCCCTCT-CCCTCCCCCCCCCCCTCTCTCCCT
*
25362499 CCCT-CCGCTACCT-CCCCCCCC
119 CACTCCCGCTACCTACCCCCCCC
25362520 CCCCCTCCTCCCCCCCTTCCCTCCCTC
1 CCCCCT-CT-CCCCCCTTCCCTCCCTC
25362547 TTTCTACCTA
Statistics
Matches: 259, Mismatches: 24, Indels: 62
0.75 0.07 0.18
Matches are distributed among these distances:
136 1 0.00
137 17 0.07
138 25 0.10
139 12 0.05
140 1 0.00
141 11 0.04
142 12 0.05
143 18 0.07
144 12 0.05
145 29 0.11
146 27 0.10
147 32 0.12
148 30 0.12
149 7 0.03
150 14 0.05
151 11 0.04
ACGTcount: A:0.03, C:0.73, G:0.00, T:0.24
Consensus pattern (141 bp):
CCCCCTCTCCCCCCTTCCCTCCCTCACTCCTCCCTATCCCCCTCCTCCCCCTCCCCTCTACCTCC
CCCCCCCTCCCCCCCCCCTCCTCCCCTCTCCCTCCCCCCCCCCCTCTCTCCCTCACTCCCGCTAC
CTACCCCCCCC
Found at i:25362643 original size:52 final size:50
Alignment explanation
Indices: 25362587--25363746 Score: 165
Period size: 49 Copynumber: 23.1 Consensus size: 50
25362577 CCATTACTCC
25362587 CCCCTCCCCCTCCTCCCTCTTCCCCCCCCTCTCCTACCCTCTCCTACCCCTA
1 CCCCTCCCCCTCCTCCCTCTTCCCCCCCCTCTCCT-CCCTCTCCT-CCCCTA
* *
25362639 CCCCT-CCCCTCC-CCCTACTCTCCCCCCGACCCTCACTCCCCCCTCCTCCCTCCCCTC
1 CCCCTCCCCCTCCTCCCT-CT-T-CCCCC--CCCT--CTCCTCCCT-CT-CCTCCCCTA
25362696 CCCCTCCCCCTCCTCCCTC--CCTCCCCCCTCT-C-CCC-CT-CTCCCCT-
1 CCCCTCCCCCTCCTCCCTCTTCC-CCCCCCTCTCCTCCCTCTCCTCCCCTA
* * *
25362740 CCCCTCGGCCCC-CCTACCCTCTACCCCCCCCCCT-C-CCCTCCCCTCCCTCT-
1 CCCCTC--CCCCTCCT-CCCTCTTCCCCCCCCTCTCCTCCCTCTCCTCCC-CTA
* *
25362790 CCCCTCTCCCCTCCCTCCCTC-TCCCTCTTCTACCCTCCTCGTCCC-ATCC-CCCCT-
1 CCCCTC-CCCCT-CCTCCCTCTTCCC-C--C--CCCT-CTCCTCCCTCTCCTCCCCTA
*** *
25362844 CCTCCTAATAATCTTACCTACCC-C-TCCCCCCCCTC-CCTCTCC-C-CCTCCCCTA
1 CC-CC---TCCCCCT-CCT-CCCTCTTCCCCCCCCTCTCCTC-CCTCTCCTCCCCTA
* * * * * * *
25362896 CCCCT--CCCTTCTCCCTC-TCCCTCCCTTCGCTTCCTCCCTCCTCTCTCT-
1 CCCCTCCCCCTCCTCCCTCTTCCCCCCCCTCTCCTCC-CTCTCCTC-CCCTA
* *
25362944 CCCCTCTCCCTCCCCTCCC-C-TCCCTCCCCC-CTCC-CCCTC-CC-CCCC-C
1 CCCCTC-CCC-CTCCTCCCTCTTCCC-CCCCCTCTCCTCCCTCTCCTCCCCTA
* * * * * *
25362990 CCTCCTCTCCCTCTCTCTCCTCTCCCCCCCCCCCT-CTTCCTACTCCCTCTCCTTC
1 CC-CCTCCCCCTC-CTC-CCTCTTCCCCCCCCTCTCCTCCCT-CT-CCTC-CCCTA
* * * *
25363045 CCCCTCTCCCC-CCTCCC-C-TCCTCTCCCTCTCCCTACCCTCCCCTCCCC-C
1 CCCCTC-CCCCTCCTCCCTCTTCCCCCCCCTCT-CCT-CCCTCTCCTCCCCTA
*
25363094 CCCCT-CCCCTCCT--CTCTTACCCCTCCCCTC-CCTTCCT-T-CTCACCTACTCA
1 CCCCTCCCCCTCCTCCCTCTT-CCCC-CCCCTCTCCTCCCTCTCCTC-CC--CT-A
* * * *
25363144 CTCTCCTCTCCCTCC-CCCTCTCCCCCCCCCTCTCCCCCCTCACCTCCTCC--
1 C-C-CCTCCCCCTCCTCCCTCTTCCCCCCCCTCTCCTCCCTCTCCTCC-CCTA
* * *
25363194 CCCCTCCCTACTCCTCCC-C--CCCCCCCCTC-CCTCCCCCTACTCTCCC--
1 CCCCTCCC-CCTCCTCCCTCTTCCCCCCCCTCTCCTCCCTCTCCTC-CCCTA
* * * *
25363240 CCCCTCTCCCTCCTCCCTCCGTCCTCCCCC-CTCCTACCC-CTCCTCTCCCTC
1 CCCCTCCCCCTCCTCCCT-CTTCCCCCCCCTCTCCT-CCCTCTCCTC-CCCTA
* * * * * * *
25363291 CCCCTCCCCC-CCTTCGT-TT-CTCCCTCTCCCCTCCCTATTCCTCCTTCCTC
1 CCCCTCCCCCTCCTCCCTCTTCCCCCCCCTCTCCTCCCT-CTCCTCC--CCTA
* * * * * *
25363341 CCTTCCTCCTCCCTCC-CCCTC-TCTCTCCGCTC-CC-CCCCCTCCCCCCCTT
1 CC--CCTCC-CCCTCCTCCCTCTTCCCCCCCCTCTCCTCCCTCTCCTCCCCTA
* * * *
25363390 CCGC-CCCCCTCCTATCCCCCCTCCCTCCCCTCT-CTCCCTCT-CTCTCCCT-
1 CCCCTCCCCCTCC--TCCCTCTTCCCCCCCCTCTCCTCCCTCTCCTC-CCCTA
* * * * * * *
25363439 CTCCCTCCTCCTCTCCCCCCTCTACTCCTCCTCTCTACTCCCCCTCCCTCCTCTA
1 C-CCCTCC-CC-CTCCTCCCTCTTC-CCCCCCCTCTCCTCCCTCT-CCTCCCCTA
** *
25363494 CCCCTCCTCCCTCCT-CCTC--CCTCCCTACTCTCTCTCCTCCCTCCTCCCCT-
1 CCCCTCC-CCCTCCTCCCTCTTCC-CCCCCCTCTC-CTCC-CTCTCCTCCCCTA
* *
25363544 CCTCCCCCCCCTCCTCCTCTTCTCTCCCCCCCCTAC-CCTCCCCCTACCTCCCCT-
1 CC-CCTCCCCCTCCTCC-C-TCT-TCCCCCCCCT-CTCCTCCCTCT-CCTCCCCTA
*
25363598 CTCTCTCCCTTCCTCCCTCCC-C-TCCCTTCCCCC-CTCC-CCCTC-CCT-CCCT-
1 C-CCCTCCC--CCT-CCTCCCTCTTCCC--CCCCCTCTCCTCCCTCTCCTCCCCTA
* * * *
25363647 CCCTTCCCTCTCCTCCCTC-CCCTCCCCCCCCT-CTCCCTCCTCC-CCCCTA
1 CCCCTCCCCCTCCTCCCTCTTCC-CCCCCCTCTCCTCCCT-CTCCTCCCCTA
* * *
25363696 -CCCT-CTCCT-CT-CCTCTTCCCCCCTCC-CTCCTCTCTCCCCT-CCCTA
1 CCCCTCCCCCTCCTCCCTCTTCCCCCC-CCTCTCCTCCCTCTCCTCCCCTA
25363741 CCCCTC
1 CCCCTC
25363747 TTTCCCCCCC
Statistics
Matches: 833, Mismatches: 118, Indels: 319
0.66 0.09 0.25
Matches are distributed among these distances:
44 9 0.01
45 72 0.09
46 73 0.09
47 57 0.07
48 60 0.07
49 91 0.11
50 91 0.11
51 76 0.09
52 75 0.09
53 63 0.08
54 64 0.08
55 35 0.04
56 14 0.02
57 34 0.04
58 15 0.02
59 4 0.00
ACGTcount: A:0.03, C:0.70, G:0.01, T:0.26
Consensus pattern (50 bp):
CCCCTCCCCCTCCTCCCTCTTCCCCCCCCTCTCCTCCCTCTCCTCCCCTA
Found at i:25362958 original size:71 final size:66
Alignment explanation
Indices: 25356769--25359221 Score: 329
Period size: 66 Copynumber: 36.7 Consensus size: 66
25356759 CTTCCCCTAT
* * *
25356769 CTCCCCTCCCCCTCCTCTTCCCCCTCCTCCTCCCCTCTCCC-CCT-CCCTTCTTTCCTACCCCTC
1 CTCCCCT-CCCCTCC-CTTCTCCCT-CTCC-CCCCTC-CCCTCCTCCCCCTCTCT-CT-CCCCT-
25356832 CCCCCTCCCCC
58 -CCCCT-CCCC
** *
25356843 CTCTACTCCCCTCCCTCTCCTCCCCTCCCCCCCCTCCCCTACCTCCTCCCTCTC-C-CCCTCTCC
1 CTCCCCTCCCCTCCCT-T-CT-CCCTCTCCCCCCTCCCCT-CCTCC-CCCTCTCTCTCCC-CTCC
25356906 CC-CCTCC
60 CCTCC-CC
* * * **
25356913 CTCTCCTCTCCTCCCCTAACCCTCTCCCCTCC-CCCC-CCT-CCCCTCT-TC-CCCCTCCCCCTC
1 CTCCCCTCCCCTCCCTTCTCCCTCTCCCC-CCTCCCCTCCTCCCCCTCTCTCTCCCCT-CCCCTC
25356973 CCC
64 CCC
** * * * *
25356976 C-CCTCCTACCCCTCCCCCCTCTCT-TCCCCTCC-CCGCC-CCTCCCCCTCCCCCTCCCC-CCTA
1 CTCC-CCT-CCCCTCCCTTCTCCCTCTCCCC-CCTCC-CCTCCTCCCCCTCTCTCTCCCCTCC-C
25357036 CTCCCC
61 CTCCCC
* * * * * * * *
25357042 C-CTCCTACCCCTTTCCTCCCCCCCCTACCCCC-CCCTTCCTCCCTCC-CTTCTACTTCCCCCCC
1 CTCCCCT-CCCC-TCCCTTCTCCCTCTCCCCCCTCCCCTCCTCCC-CCTC-TCT-C-T-CCCCTC
25357104 CCCTCCCC
59 CCCTCCCC
* * * * * *
25357112 TCTCCCC-CCCCTCCC--CTCCCCCCCCCCCCTCCCCCTCCTCCTCCCCCTACCCTCCCCTACGC
1 -CTCCCCTCCCCTCCCTTCTCCCTCTCCCCCCT-CCCCTCCTCC-CCCTCT-CTCTCCCCTCCCC
25357174 -CCCC
62 TCCCC
* *
25357178 C-CCCCTCCCTACTCCCCTTCCCCCTAC-CCCCCCTCCCCCTCCCCTCCCCC-C-C-CTCCCCCC
1 CTCCCCTCCC--CT-CCCTTCTCCCT-CTCCCCCCT-CCCCT--CCTCCCCCTCTCTCTCCCCTC
*
25357238 CCCTCTCC
59 CCCTCCCC
*
25357246 C-CCCCT-CCCTCCC-TCTCCCTCTCCCCCC-CCCCTTC-CCCCCTC-CTCTCCCCTCCCTCCTC
1 CTCCCCTCCCCTCCCTTCTCCCTCTCCCCCCTCCCCTCCTCCCCCTCTCTCTCCCCT-CC-CCTC
25357305 CCC
64 CCC
** * * **
25357308 CTCCCCCTACTCCC-CCCCCCTCCC-C-CCTCCCTCCCTCTCCTCCCCCTC-CTCCCCCCCTCTT
1 CT-CCCCT-C-CCCTCCCTTCTCCCTCTCCCCCCTCCC-CTCCTCCCCCTCTCT-CTCCCCTCCC
25357369 CTCCCTC
61 CTCCC-C
* *
25357376 CTCCCCGTCTCCC-CCC-TCTCCCCCTCCTCCTCC-ACCCTCC-CTCCCCTC-CT-TCCCTCTCC
1 CTCCCC-TC-CCCTCCCTTCTCCCTCTCC-CC-CCTCCCCTCCTC-CCCCTCTCTCTCCC-CTCC
*
25357435 CCCCCCC
60 CCTCCCC
* * * * * * *
25357442 CTCTCC-CCCCTCCC--CCCCCCCTCCCCCCTCCCTTCCT--TCTTCT-TCTCCCTCTTCTCCTT
1 CTCCCCTCCCCTCCCTTCTCCCTCTCCCCCCTCCCCTCCTCCCCCTCTCTCTCCC-C-TC-CCCT
25357501 ACCTCC
63 -CC-CC
* * * * * * *
25357507 CTACCCCTACCCCCCCCCTCCCCCTCCCTCCCCCTTCGCTCCTCTCCCCT-TC-C-CCCCCCCCC
1 CT-CCCCT-CCCCTCCCTTCTCCCTCTC-CCCCCTCCCCTCCTC-CCCCTCTCTCTCCCCTCCCC
*
25357569 TCCCT
62 TCCCC
* * *
25357574 CTCCTAC-CCCCTCCCTTCCCTTCCCTC-CTCCCCTCCCCTCCTCTCCCCTCCCCCTCTTCCCCT
1 CTCC-CCTCCCCTCCCTT--C-TCCCTCTCCCCCCTCCCCTCCTC-CCCCT--CTCTC-TCCCCT
25357637 CCCC-CCCC
58 CCCCTCCCC
* *
25357645 TCTCCCCCCCCCT-CC-TC-CCCTCCTCCCCCCTTCCCCTCC-CCTCCTCTCTCCTCCCCCTCTC
1 -CTCCCCTCCCCTCCCTTCTCCCT-CTCCCCCC-TCCCCTCCTCCCCCTCTCT-CT-CCCCTC-C
*
25357706 CC-CCTC
60 CCTCCCC
25357712 CTCCCC-CCCC-CCC-TCT--CT-TCCCCCC-CCCCTCCTCCTACCC-CTCTC-CCCCTCCTTAC
1 CTCCCCTCCCCTCCCTTCTCCCTCTCCCCCCTCCCCTCCTCC--CCCTCTCTCTCCCCTCC---C
25357768 CTCCCC
61 CTCCCC
* * * * * * *
25357774 C-CCCC-CCCCTCTC-TCT-CC-CTCCCTCCTCCCGTACCCCCCCCCCTCCCTCCTCTCCCCTCC
1 CTCCCCTCCCCTCCCTTCTCCCTCTCCCCCCTCCCCT-CCTCCCCCTCTCTCTCCCCTCCCCTCC
25357834 TCC
65 -CC
* * *
25357837 TCTCCCCT-ACC-CCC-TCTTCCC-C-CCCCCCTTCCC-CCTCTCCCT-TCTC-CTCCCTCCCCT
1 -CTCCCCTCCCCTCCCTTC-TCCCTCTCCCCCCTCCCCTCCTCCCCCTCTCTCTC-CCCTCCCCT
*
25357894 --CT
63 CCCC
* *
25357896 CTCCCC-CCTCCTCCCCTC-CCCTCTCCCCCAC-CCCCTTTCCCTCCCCCTACCCTCTCCCCT-C
1 CTCCCCTCC-CCTCCCTTCTCCCTCTCCCCC-CTCCCC--T-CCTCCCCCT-CTCTCTCCCCTCC
25357957 CCTCCCC
60 CCTCCCC
* * * *
25357964 CTACTCTCTCTCCTCC-CCCCTCCCCTCTCTCCCCCCCCTCCCCTCC-CCCCCCCTC-CCCCCCT
1 CT-C-C-C-CTCC-CCTCCCTTCTCC-CTCT--CCCCCCTCCCCTCCTCCCCCTCTCTCTCCCCT
*
25358026 CCCCCTCTCC
58 -CCCCTCCCC
* *
25358036 TTCTCCCTCCCCTCCC--C-CCCCCTCCCCCC-CCCC-CC-CCCCCTACTC-C-CCCCTCCTACG
1 CTC-CCCTCCCCTCCCTTCTCCCTCTCCCCCCTCCCCTCCTCCCCCT-CTCTCTCCCCTCC--C-
25358093 TCTCCCTC
61 -CTCCC-C
* * * * * *
25358101 CTCCCCTCCCCCCCCTCCTCCCT-TTCCCTC-CCCCT-CTACCTCCCTAC-C-CCCCCCTCCTCT
1 CTCCCCTCCCCTCCCTTCTCCCTCTCCCCCCTCCCCTCCT-CC-CCCT-CTCTCTCCCCTCCCCT
*
25358161 CCTC
63 CCCC
* ** * *
25358165 CTCCTC-CCCCTCTATTCTCCCCCTCCTCCCTACCCCTCCCTTACTCCTCCTCTTCTCTACCTCC
1 CTCCCCTCCCCTCCCTTCTCCCTCTCCCCCCT-CCCCT-CC-T-C-CC-CCTC-TCTCT-CC-CC
* *
25358229 TCCCTTACCC
57 TCCCCTCCCC
* * *
25358239 CTCCTCCCTCCTTCCTTCCC-CCCCCTCTCTCCCTCCCTCCCCGTCCCCCCTCCTC-CTCTTCCC
1 CT-C-CCCTCC--CC-TCCCTTCTCC-CTCTCCC-CCCTCCCC-TCCTCCC-CCTCTCTC-T-CC
25358302 TCCTCCCCCTCCCC
55 -CCT-CCCCTCCCC
* * * * * * *
25358316 CCCCCCCCCCCTCCCCTC-CCCCCTCCTCCCT-CCCTCCTCCTCCCTCCCTCCTCTCTCCCTACT
1 CTCCCCTCCCCTCCCTTCTCCCTCTCCCCCCTCCCCTCCTCC-CCCT--CT-CTCTC-CCCTCCC
25358379 CTCCCC
61 CTCCCC
* ** * * *
25358385 CCCCCCTACCCCTCCCCCCT-CCTC-CCCCCCGCCTCCCTCCCTCCCCCTCCCTCTCCCTTCCCC
1 CTCCCCT-CCCCTCCCTTCTCCCTCTCCCCCC-TC-CCCT-CCTCCCCCTCTCTCTCCCCTCCCC
25358448 T--CC
62 TCCCC
* * *
25358451 CTCCGCTCCTCCT-CC-TCTCCCTCCTCTCCTCC-CCCCTCCTCCTCCCTTCTACCCTCCCC-CT
1 CTCCCCTCC-CCTCCCTTCTCCCT-CTC-CCCCCTCCCCTCCTCC-CCC-TCT-CTCTCCCCTC-
* *
25358512 CACTTCCC
59 CCCTCCCC
** * * * *
25358520 CTCTTCTCCCCTCCCTCCT-CCTC-CCCCTCTCCCCTACCCTACACC-C-CTC-CCCCTCCCCTC
1 CTCCCCTCCCCTCCCTTCTCCCTCTCCCCCCTCCCCT--CCTCCCCCTCTCTCTCCCCTCCCCTC
25358580 CCC
64 CCC
* * * *
25358583 C-CTCCCTCCCCCTCCC--CTTCCTACCCCCCCCTTCCCTCCTTCTCCCTCCTACTCTCCTCCTT
1 CTC-CCCT-CCCCTCCCTTCTCCCT-CTCCCCCCTCCCCTCC-TCCCCCT-CT-CTCTCC-CC--
* * *
25358645 TTCCCTACCT
57 TCCCCTCCCC
* * * *
25358655 CTCCCCCTCTCC-CCCTATTTCCCTCTCTACCCCC-CCCCT--TACCCCTC-CCCT-CCCTACCC
1 CT-CCCCTCCCCTCCCT-TCTCCCTCTC--CCCCCTCCCCTCCTCCCCCTCTCTCTCCCCT-CCC
*
25358714 TCTCTCC
61 -CTCCCC
* * * * *
25358721 CTCTCTTCCCC-CCCTCCT-ACT-TCCCCCC-CCCCT-CT-CCCCTCTCCCTCCTCCTCTCCCTC
1 CTCCCCTCCCCTCCCTTCTCCCTCTCCCCCCTCCCCTCCTCCCCCTCTCTCTCC-CCTC-CCCTC
25358780 CCC
64 CCC
* * *
25358783 C-CTCCC-CCCCTCCTCTTC-CCC-CTCCCTCCC-CCCCTCCTTCTACTCTCTCCCCTCTCCCTC
1 CTC-CCCTCCCCTCC-CTTCTCCCTCTCCC-CCCTCCCCTCC-TC-CCCCTCT-CTCTC-CCCTC
25358843 TCCCTCCCC
59 -CCCTCCCC
* * * *
25358852 CTCCCCTCTCCCCTCCCTACCTACCCTC-CCCCTCCTACCCTTCTCCCCC-C-CTCCCCCCT-CC
1 CT-CCC-CTCCCCTCCCT-TCT-CCCTCTCCCC-CCTCCCCTCCTCCCCCTCTCTCTCCCCTCCC
25358913 CTCCCTC
61 CTCCC-C
* * * *
25358920 C-CCCC-CCCCTCCCTCCTCCC-CTCCCCCC-CCTCTTCGTCCCCCTC-CCCTCCCCTACTCCCC
1 CTCCCCTCCCCTCCCTTCTCCCTCTCCCCCCTCC-CCTCCTCCCCCTCTCTCT-CCC--CT--CC
25358980 CCTTCCCC
60 CC-TCCCC
* *
25358988 CT-CCCTACCCCTCCC-TCTCCCTC-CCCTCTCC-CCCCTCCCCCCCCT-TCTCCCCCCTCCCC-
1 CTCCCCT-CCCCTCCCTTCTCCCTCTCCC-C-CCTCCCCTCCTCCCCCTCTCTCTCCCCTCCCCT
25359047 CCCTAC
63 CCC--C
* * * *
25359053 C-CCTCCTCCCCCTCCCCTCCTCCCT-TCCTCTCCTTCCCC-CCT-CCCCTC-C-CTCTCCTACC
1 CTCC-CCT-CCCCT-CCCTTCTCCCTCTCC-C-CCCTCCCCTCCTCCCCCTCTCTCTCCCCTCCC
25359112 C-CCCC
61 CTCCCC
* * * *
25359117 C-CCCCTCTCCC-CCCTCCTACCCT-TCCTCCCCTCCCCCCCT-CCCCTCTCCCTACCCTCCCC-
1 CTCCCCTC-CCCTCCCTTCT-CCCTCTCC-CCCCTCCCCTCCTCCCCCTCTCTCTCCCCTCCCCT
*
25359177 CCTC
63 CCCC
* * * *
25359181 CT-CCCTCCTCT-CCTCCTCCC-CT-CCCCCTCCTCTCTTCCCCC
1 CTCCCCTCCCCTCCCTTCTCCCTCTCCCCCCTCCCCTCCTCCCCC
25359222 CCCCCCTCCT
Statistics
Matches: 1797, Mismatches: 269, Indels: 639
0.66 0.10 0.24
Matches are distributed among these distances:
58 12 0.01
59 15 0.01
60 50 0.03
61 91 0.05
62 115 0.06
63 150 0.08
64 139 0.08
65 145 0.08
66 167 0.09
67 153 0.09
68 133 0.07
69 159 0.09
70 129 0.07
71 59 0.03
72 94 0.05
73 46 0.03
74 49 0.03
75 26 0.01
76 24 0.01
77 17 0.01
78 1 0.00
79 5 0.00
80 13 0.01
81 5 0.00
ACGTcount: A:0.02, C:0.73, G:0.00, T:0.24
Consensus pattern (66 bp):
CTCCCCTCCCCTCCCTTCTCCCTCTCCCCCCTCCCCTCCTCCCCCTCTCTCTCCCCTCCCCTCCC
C
Found at i:25363009 original size:100 final size:98
Alignment explanation
Indices: 25362864--25363840 Score: 339
Period size: 100 Copynumber: 9.6 Consensus size: 98
25362854 ATCTTACCTA
* *
25362864 CCCCT-CC-CCCCCCTCCCTCTCCCCCTCCCCTACCC-CTCC-CT-TCTCCCTCTCCCTCCCTTC
1 CCCCTCCCTCCCCCCTCCCCCTCCCCCCCCCCT-CCCTC-CCTCTCTCTCCCTCTCCCTCCCTTC
25362924 GCTTCCTCCCTCCTCTCTCTCCCCTCTCCCTCCCCT
64 -CTTCCTCCCTCCTCTCTCTCCCCTCTCCCTCCCCT
* **
25362960 CCCCTCCCTCCCCCCTCCCCCTCCCCCCCCCCTCCTCTCCCTCTCTCT-CCTCTCCCCCCCCCCC
1 CCCCTCCCTCCCCCCTCCCCCTCCCCCCCCCCTCC-CTCCCTCTCTCTCCCTCT-CCCTCCCTTC
*
25363024 TCTTCCT-ACTCC-CTCTCCTTCCCC-CTCTCC-CCCCT
64 -CTTCCTCCCTCCTCTCT-C-TCCCCTCTC-CCTCCCCT
*
25363059 CCCCTCCTCTCCCTCTCC-CTACCCTCCCCTCCCCCC-CCCTCCCCTCCTCTCTTACCC-CTCCC
1 CCCCTCC-CTCCC-C-CCTC-CCCCTCCCC-CCCCCCTCCCT-CCCT-CTCTC-T-CCCTCT-CC
* *
25363121 CTCCCTTCCTT-CTCACCTACTCACTCT--CCTCTCCCTCCCCCT
56 CTCCCTTCCTTCCTC-CCTCCTCTCTCTCCCCTCTCCCT-CCCCT
* * * * * *
25363163 CTCC-CCC-CCCCTCTCCCCCCTCACCTCCTCCC-CCCTCCCTACTC-CTCCC-C-CCCCCCCCT
1 CCCCTCCCTCCCCCCT-CCCCCTC-CCCCCCCCCTCCCTCCCT-CTCTCTCCCTCTCCCTCCCTT
* * *
25363222 CCCTCC-CCCTACTCTC-CCCCCCTCTCCCTCCTCCCT
63 CCTTCCTCCCTCCTCTCTCTCCCCTCTCCCT-C-CCCT
* * * *
25363258 CCGTCCTCCC-CCCTCCTACCCCTCCTCTCCCTCCCCCTCCCCCCCTTCGTTTCTCCCTCTCCCC
1 CC--CCTCCCTCCCCCCT--CCC-CCTC-CCCCCCCCCTCCCTCCC-TC-TCTCTCCCTCT-CCC
* * *
25363322 TCCCTATTCCTCCTTCCTCCCTTCCTCCTCCCTCCCCCTCTCTCTCCGCT
57 TCCC---T--TCCTTCCTCCC-TCCT-CTCTCT-CCCCTCTCCCTCCCCT
* * *
25363372 CCCCCCCCTCCCCCCCTTCCGCCCCCCTCCTATCCCCCCTCCCTCCC-CTCTCTCCCTCTCTCTC
1 CCCCTCCCT-CCCCCC-TCC-CCCTCC-CC---CCCCCCTCCCTCCCTCTCTCTCCCTCTCCCTC
*
25363436 CC-T-CTCCCT-CCTCCTCTC-C-CCCCTCTACTCCTCCTCTCT
59 CCTTCCTTCCTCCCTCCTCTCTCTCCCCTCT-C-CCTCC-C-CT
* * * *
25363475 ACTCC-CCCTCCCTCCTCTACCCCTCCTCCCTCCTCCTCCCTCCCTACTCTCTCTCCTCCCTCCT
1 -CCCCTCCCTCCC-CC-CTCCCCCTCC-CCC-CCCCCTCCCTCCCT-CTCTCTC-CCTCTC-CCT
* * * * *
25363539 CCCCTCCTCCCCCCCCTCCTCCTCTTCTCTCCC-CCCCCTACCCT
58 CCCTTCCT-TCCTCCCTCCT-CTC-TCTC-CCCTCTCCCTCCCCT
* * * *
25363583 CCCCCTACCTCCCCTCTCTCTCCCTTCCTCCCTCCCCTCCCTTCCC-C-C-CTCCCCCTCCCTCC
1 -CCCCTCCCTCCCC-C-CTC-CCCCTCC-CCCCCCCCTCCC-TCCCTCTCTCTCCCTCTCCCTCC
* *
25363645 CTCCCTTCC-CTCTCCTC-C-CTCCCCTC-CCC-CCCCT
60 CTTCCTTCCTCCCTCCTCTCTCTCCCCTCTCCCTCCCCT
* *
25363679 CTCCCT-CCTCCCCCCTACCCTCTCCTCTCCTCTTCCC-CCCTCCCTCCTCTCTCCC-CTCCCTA
1 C-CCCTCCCTCCCCCCT-CCCCCTCC-C-CC-C-CCCCTCCCTCCCT-CTCTCTCCCTCTCCCT-
* * * * * *
25363741 CCCCTCTTTCC-CCCCCCTAC-CTCT-CCTTTTTCCTCCCCT
58 CCCTTCCTTCCTCCCTCCT-CTCTCTCCCCTCTCCCTCCCCT
* *
25363780 CCCCCTCCC-CCTCCCTCCCTCCTGTCCCCCCCCCCT-CCTCCC-C-CTC-CCCTCCCCCTCCCT
1 -CCCCTCCCTCCCCCCTCCC-CC--TCCCCCCCCCCTCCCTCCCTCTCTCTCCCTCTCCCTCCCT
25363840 T
62 T
25363841 TACTCCCCTC
Statistics
Matches: 680, Mismatches: 91, Indels: 221
0.69 0.09 0.22
Matches are distributed among these distances:
92 1 0.00
93 17 0.03
94 30 0.04
95 24 0.04
96 29 0.04
97 21 0.03
98 60 0.09
99 62 0.09
100 75 0.11
101 41 0.06
102 54 0.08
103 47 0.07
104 34 0.05
105 24 0.04
106 17 0.03
107 4 0.01
108 13 0.02
109 21 0.03
110 18 0.03
111 8 0.01
112 17 0.03
113 23 0.03
114 15 0.02
115 3 0.00
116 22 0.03
ACGTcount: A:0.02, C:0.70, G:0.01, T:0.27
Consensus pattern (98 bp):
CCCCTCCCTCCCCCCTCCCCCTCCCCCCCCCCTCCCTCCCTCTCTCTCCCTCTCCCTCCCTTCCT
TCCTCCCTCCTCTCTCTCCCCTCTCCCTCCCCT
Found at i:25363101 original size:181 final size:180
Alignment explanation
Indices: 25362770--25363101 Score: 390
Period size: 181 Copynumber: 1.8 Consensus size: 180
25362760 CTACCCCCCC
* * * *
25362770 CCCTCCCCTCCCCTCCCTCTCCCCTCTCCCCTCCCTCCCTCTCCCTCTTCTACCCTCCTCGTCCC
1 CCCTCCCCTCCCCTCCCTCCCCCCTCTCCCCTCCCCCCCCCTCCCTCCTCTACCCTCCTCGTCCC
*
25362835 ATCCCCCCTCCTCCTAATAATCTTACCTACCCCTCCCCCCCCTCCCTCTCCCCCTCCCCTACCCC
66 ACCCCCCCTCCTCCTAATAATCTTACCTACCCCTCCCCCCCCTCCCTCTCCCCCTCCCCTACCCC
* *
25362900 TCCCTTCTCCCTCTCCCTCCCTTCGCTTCCTCCCTCCTCTCTCTCCCCTCT
131 TCCC-TCTCCCCCCCCCTCCCTTCGCTTCCTCCCTCCTCTCTCTCCCCTCT
*
25362951 CCCTCCCCTCCCCTCCCTCCCCCCTC-CCCCTCCCCCCCCCCTCCTCTCCCTCT-CTCTCCTC-T
1 CCCTCCCCTCCCCTCCCTCCCCCCTCTCCCCT-CCCCCCCCCTCC-CT-CCTCTACCCTCCTCGT
* * * ** * * *
25363013 CCCCCCCCCCCTCTTCCTACT-CCCTCT-CCTTCCCCCTCTCCCCCCTCCCCTCCTCTCCCTCTC
63 CCCACCCCCCCTCCTCCTAATAATCT-TACC-TACCCCTCCCCCCCCT-CCCT-CTCCCCCTC-C
25363076 CCTA-CCCTCCC-CTCCCCCCCCCTCCC
123 CCTACCCCTCCCTCTCCCCCCCCCTCCC
25363102 CTCCTCTCTT
Statistics
Matches: 127, Mismatches: 16, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
180 9 0.07
181 81 0.64
182 13 0.10
183 19 0.15
184 5 0.04
ACGTcount: A:0.03, C:0.70, G:0.01, T:0.27
Consensus pattern (180 bp):
CCCTCCCCTCCCCTCCCTCCCCCCTCTCCCCTCCCCCCCCCTCCCTCCTCTACCCTCCTCGTCCC
ACCCCCCCTCCTCCTAATAATCTTACCTACCCCTCCCCCCCCTCCCTCTCCCCCTCCCCTACCCC
TCCCTCTCCCCCCCCCTCCCTTCGCTTCCTCCCTCCTCTCTCTCCCCTCT
Found at i:25363125 original size:71 final size:68
Alignment explanation
Indices: 25362935--25364440 Score: 257
Period size: 71 Copynumber: 21.2 Consensus size: 68
25362925 CTTCCTCCCT
* **
25362935 CCTCTCTCTCCCCTCTCCCTCCCCTCCCCTCC-CTCCCCCCTCCCCCTCCCCCCCCCCTCCTCTC
1 CCTC-CTCTCCCCTC-CCCCCCCCTCCCCTCCTCTCTTCCC-CCCCCTCCCCCCCCCCTCCTCTC
25362999 CCTCTC
63 CCTCTC
* * * *
25363005 TCTCCTCTCCCC-CCCCCCCTCTTCCTACTCCCTCTCCTT-CCCCCTCTCCCCCCTCCCCTCCTC
1 CCTCCTCTCCCCTCCCCCCC-CCTCC-CCT-CCTCT-CTTCCCCCCCCTCCCCCC-CCCCTCCTC
25363068 TCCCTCTC
61 TCCCTCTC
** * *
25363076 CCTACC-CTCCCCTCCCCCCCCCTCCCCTCCTCTCTTACCCCTCCCCTCCCTTCCTTCTCACCTA
1 CCT-CCTCTCCCCTCCCCCCCCCTCCCCTCCTCTCTT-CCCC-CCCCTCCC--CCCCCCCTCCT-
*
25363140 CTCACTCTC
60 CTCCCTCTC
* * *
25363149 CTCTCCCTCCCCCTCTCCCCCCCCCTCTCCCCCCTCACCTCCTCCCCCCTCCCTACTCCTCCCCC
1 C-CT-CCTCTCCC-CTCCCCCCCCCTC-CCCTCCT---CT-CTTCCCCC-CCCT-C-CC-CCCCC
* * *
25363214 CCCCCCCTCCCTCCC
54 CCTCCTCTCCCTCTC
* * * * * **
25363229 CCTACTCTCCCC-CCCTCTCCCTCCTC-CCTC-CGTCCTCCCCCCT--CCTACCCCTCCTCTCCC
1 CCTCCTCTCCCCTCCCCCCCCCTCCCCTCCTCTCTTCC-CCCCCCTCCCCCCCCCCTCCTCTCCC
*
25363289 TCCC
65 TCTC
* * * * ** ** *
25363293 CCTCC-C-CCCCTTCGTTTCTCCCTCTCCCCTCC-CTATTCCTCCTTCCTCCCTTCCTCCTCCCT
1 CCTCCTCTCCCC-TC---CCCCCCCCTCCCCTCCTCTCTTCC-CCCCCCTCCCCCCCCCCT-CCT
*
25363355 CCCCCTCTC
60 CTCCCTCTC
* * * * * ** *
25363364 TCTCCGCTCCCCCCCCTCCCCCCCTTCCGCC-CCCCTCCTATCCCCCCTCCCTCCCCTCTCTCC-
1 CCTCCTCT-CCCCTCC-CCCCCCC-TCC-CCTCCTCTCTTCCCCCCCCTCCC-CCCC-CCCTCCT
*
25363427 CTCTCTCTC
60 CTCCCTCTC
* * * * **
25363436 CCTCTCCCTCCTCCTCTCCCCCCTCTACTCCTCCTCTCTACTCCCCCTCCCTCCTCTACCCCTCC
1 CCTC-CTCTCC-CCTC-CCCCCCCCT-CCCCTCCTCTCT--TCCCCC-CCCTCCCCCCCCCCTCC
*
25363501 TCCCTCCTCCTC
59 TCTC-CCT-CTC
* * * * **
25363513 CCTCCCTACTCTCTCTCCTCCCTCCTCCCCTCCTCCCCCCCCTCCTCCTCTTCTCTCCCCCCCCT
1 CCT-CCT-CTC-CCCTCCCCCCCCCTCCCCTCCTCTCTTCCC-CC-CC-C-TC-C-CCCCCCCCT
* *
25363578 ACC-CTCCCCCTA
57 -CCTCTCCCTCTC
* * * *
25363590 CCTCCCCTCTCTCTCCCTTCCTCCCTCCCCT-C-C-CTTCCCCCCTCC-CCCTCCCTCCCTCC-C
1 CCTCCTCTC-CCCTCCC--CCCCCCTCCCCTCCTCTCTTCCCCCC-CCTCCC-CCCCCCCTCCTC
25363650 TTCCCTCT-
61 -TCCCTCTC
* * * * *
25363658 CCTCC-CTCCCCTCCCCCCCCTCTCCCTCCTCCCCCCTACCCTCTCCTCTCCTCTTCCCCCCTCC
1 CCTCCTCTCCCCTCCCCCCCC-CT-CC-CCTCCTCTCTTCCC-C-CCCCTCC-C-CCCCCCCTCC
25363722 -CTCCTCTCTCC
59 TCTCC-CTCT-C
* * *
25363733 CCTCC-CTACCCCTCTTTCCCCCCCCTACCTCTCCT-T-TTTCCTCCCCTCCCCCTCCCCCTCC-
1 CCTCCTCT-CCCCTC---CCCCCCCCT-CCCCTCCTCTCTTCCCCCCCCTCCCCC-CCCCCTCCT
25363794 CTCCCTCCTGTC
60 CTCCCT-C--TC
* * * * *
25363806 CC-CCCCCCCTCCTCCCCCTCCCCTCCCCCTCC-CT-TT-ACTCCCCTCCCCTTCCCCCCCCCTC
1 CCTCCTCTCC-CCTCCCCC-CCCCT-CCCCTCCTCTCTTCCCCCCCCTCCCC--CCCCCCTCCTC
25363867 T-CCTC-C
61 TCCCTCTC
* * * * * * * * * *
25363873 CCTTC-CTCCCC-CCCCACCTCTCCTCT-TTATC-ACCCCCCCTTACCCCCCCCCT--ACT-CCT
1 CCTCCTCTCCCCTCCCCCCCCCTCCCCTCCTCTCTTCCCCCCCCTCCCCCCCCCCTCCTCTCCCT
25363931 CT-
66 CTC
* * *
25363933 CCTCCT-TCCCCTCCACCCCCCC-CGCCCTCC-C-C-T-CCCCCCCTTCCTCTCCCCT-CTCTCC
1 CCTCCTCTCCCCTCC-CCCCCCCTC-CCCTCCTCTCTTCCCCCCCCTCCCCCCCCCCTCCTCTCC
25363991 C-CTAC
64 CTCT-C
* * *
25363996 CTCTCCTCTCCCC-CCCTCCCCCC-CCCC-CCTCTCATCCCCCCTTACTCCCTCCCCCCCCCCTC
1 C-CTCCTCTCCCCTCCC-CCCCCCTCCCCTCCTCTCTTCCCCCC--CCTCCC-CCCCCCCTCCTC
*
25364058 -CCCTTTTTC
61 TCCC--TCTC
* * *
25364067 CTCTCCCCTCCCTCTCCTCCGCCCCTGTCCCC-CCTCTCTTTCCCCCCCTCCTCCCCCTCCTCTT
1 C-CTCCTCTCCC-CTCC-CC-CCCC-CTCCCCTCCTCTCTTCCCCCCCCTCC-CCCCC-CC-C-T
* * *
25364131 CTCCCCCCCCCTC
57 C-CTCTCCCTCTC
* * ** * ** *
25364144 CCTCCTCCTCCTTCTCCCCCCCCCTCCCC-CCGTCCTCCTACCTACCCCTACCTTCCCCCTTCTC
1 CCTCCT-CTCC-CCTCCCCCCCCCTCCCCTCC-T-CT-CTTCCCCCCCCTCCCCCCCCCCTCCTC
25364208 TCACC-C-C
61 TC-CCTCTC
* * * * *
25364215 CCCCCTCCTCCTCCTCCTCCCCCTCTCCCCCCCCCTC-T-CCCCCCCTCCCTCCTCCCCTCCTC-
1 CCTCCT-CTCC-CCTCC-CCCCCCCTCCCCTCCTCTCTTCCCCCCCCTCCC-CCCCCCCTCCTCT
*
25364277 CTCCTACCC
62 C-CCT-CTC
* *
25364286 CCTACTCT-CCCTCCCCCTTCCCTCTCCCCTCC-CTCTCTCCCCTCCCCTCCCCCCCCCTCTCCC
1 CCTCCTCTCCCCTCCCCC--CCC-CTCCCCTCCTCTCT-TCCCC-CCCCTCCCCCCCCC-CTCCT
*
25364349 CTCCCCCCTC
60 CT-CCCTCTC
* * *
25364359 CC-CTCTCCTCCCCTATCCCCTCCC-CCCCTCCTCTCCCCTCCCCCCCCT-CCCCCCCCC-CCTC
1 CCTC-CT-CTCCCCT-CCCCCCCCCTCCCCTCCTCT--CTTCCCCCCCCTCCCCCCCCCCTCCTC
*
25364420 CCCCTC-C
61 TCCCTCTC
* *
25364427 CCCCCTCTCTCCTC
1 CCTCCTCTCCCCTC
25364441 TAATCAAGTC
Statistics
Matches: 1057, Mismatches: 211, Indels: 340
0.66 0.13 0.21
Matches are distributed among these distances:
60 30 0.03
61 8 0.01
62 22 0.02
63 12 0.01
64 52 0.05
65 13 0.01
66 15 0.01
67 36 0.03
68 55 0.05
69 64 0.06
70 70 0.07
71 126 0.12
72 114 0.11
73 106 0.10
74 59 0.06
75 56 0.05
76 81 0.08
77 62 0.06
78 22 0.02
79 22 0.02
80 20 0.02
81 10 0.01
82 2 0.00
ACGTcount: A:0.03, C:0.71, G:0.01, T:0.26
Consensus pattern (68 bp):
CCTCCTCTCCCCTCCCCCCCCCTCCCCTCCTCTCTTCCCCCCCCTCCCCCCCCCCTCCTCTCCCT
CTC
Found at i:25363140 original size:108 final size:103
Alignment explanation
Indices: 25362865--25363256 Score: 257
Period size: 99 Copynumber: 3.9 Consensus size: 103
25362855 TCTTACCTAC
* * ** *
25362865 CCCTC-CCCCCCCTCCCTCTCCCCCTCCCCTACCCCTCCCT-TCTC-CCTCTCCCTCCCTTCGCT
1 CCCTCTCCCTCCCTCCC-CTCCCCC-CCCCT-CCCCTCCCTCTCTCTCCCCTCCC-CCCCCCCCT
*
25362927 -T-CCTCCCTC-CTCT-CTCTCCCCTCTCCCTCCCCTCCCCTCCCT
62 CTACCT-ACTCACTCTCCTC-CCCCTCT-CC-CCCCTCCCCTCCCT
* * * *
25362969 -CC-C-CCCTCCC-CCTC-CCCCCCCCCTCCTCTCCCTCTCTCTCCTCTCCCCCCCCCCCTCTTC
1 CCCTCTCCCTCCCTCCCCTCCCCCCCCCTCCCCTCCCTCTCTCTCCCCTCCCCCCCCCCCTCTAC
*
25363029 CTACTCCCTCTCCTTCCCCCTCTCCCCCCTCCCCTCCTCT
66 CTACTCACTCTCC-TCCCCCTCTCCCCCCTCCCCTCC-CT
* *
25363069 CCCTCTCCCTACCCTCCCCTCCCCCCCCCTCCCCT-CCTCTCT-TACCCCTCCCCTCCCTTCCTT
1 CCCTCTCCCT-CCCTCCCCTCCCCCCCCCTCCCCTCCCTCTCTCT-CCCCTCCCC-CCC-CCCCT
* *
25363132 CTCACCTACTCACTCTCCTCTCCCTC-CCCCTCT-CCC-CCC-
62 CT-ACCTACTCACTCTCCTCCCCCTCTCCCCCCTCCCCTCCCT
* * * *
25363171 CCCTCTCCC-CCCTCACCTCCTCCCCCCT-CCCT-ACTC-CTC-CCCC-CCCCCCCTCCCTC--C
1 CCCTCTCCCTCCCTCCCCTCCCCCCCCCTCCCCTCCCTCTCTCTCCCCTCCCCCCCCCCCTCTAC
* *
25363228 C-CCT-ACTCTCC-CCCCCTCTCCCTCCTCCC
66 CTACTCACTCTCCTCCCCCTCTCCCCCCTCCC
25363257 TCCGTCCTCC
Statistics
Matches: 243, Mismatches: 24, Indels: 56
0.75 0.07 0.17
Matches are distributed among these distances:
88 6 0.02
89 12 0.05
90 4 0.02
91 2 0.01
94 5 0.02
95 3 0.01
96 4 0.02
97 12 0.05
98 17 0.07
99 36 0.15
100 29 0.12
101 12 0.05
102 19 0.08
103 7 0.03
104 6 0.02
105 21 0.09
106 23 0.09
107 12 0.05
108 13 0.05
ACGTcount: A:0.03, C:0.72, G:0.00, T:0.26
Consensus pattern (103 bp):
CCCTCTCCCTCCCTCCCCTCCCCCCCCCTCCCCTCCCTCTCTCTCCCCTCCCCCCCCCCCTCTAC
CTACTCACTCTCCTCCCCCTCTCCCCCCTCCCCTCCCT
Found at i:25363413 original size:213 final size:224
Alignment explanation
Indices: 25363120--25363518 Score: 483
Period size: 213 Copynumber: 1.8 Consensus size: 224
25363110 TTACCCCTCC
* *
25363120 CCTCCCTTCCTTCTCACCTACTCACTCTCCTCTCCCTCCCCCTCTCCCCCCCCCTCTCCCCCCTC
1 CCTCCCTTCCTCCTCACCTACCCACTCTCCTCTCCCTCCCCCTCTCCCCCCCCCTCTCCCCCCTC
*
25363185 ACCTCCTCCCCCCTCCCTACTCCTC-CCCCCCCCCCCTCCCTCCCCCTACT-CTC-CCCCCCTCT
66 ACCTCCTCCCCCCTCCCT-CCCCTCTCCCCCCCCCCCTCCCTCCCCCTACTCCTCTCCCCCCTCT
* *
25363247 -C-CCTCCTCCCTCCGTCCTCCC-CCCT-C-CTACCCCTCCTCTC-CCTCC-CCCTCCCCCCCTT
130 ACTCCTCCTCCCTAC-TCC-CCCTCCCTCCTCTACCCCTCCTCCCTCCTCCTCCCTCCCCCCCTT
25363305 CGTTTCTCCCTCTCCCCTCCCTATTCCTCCTT
193 CGTTTCTCCCTCTCCCCTCCCTATTCCTCCTT
* *
25363337 CCTCCCTTCCTCCTC-CCT-CCCCCTCT-CTCTCCGCTCCCCC-C-CCTCCCCCCCT-TCCGCCC
1 CCTCCCTTCCTCCTCACCTACCCACTCTCCTCTCC-CTCCCCCTCTCC-CCCCCCCTCTCCCCCC
* * * * * *
25363396 -C-CCTCCTATCCCCCCTCCCTCCCCTCTCTCCCTCTCTCTCCCTCTCCCTCCTCCTCTCCCCCC
64 TCACCTCC--TCCCCCCTCCCTCCCCTCTCCCCCCCCCCCTCCCTCCCCCTACTCCTCTCCCCCC
*
25363459 TCTACTCCTCCTCTCTACTCCCCCTCCCTCCTCTACCCCTCCTCCCTCCTCCTCCCTCCC
127 TCTACTCCTCCTCCCTACTCCCCCTCCCTCCTCTACCCCTCCTCCCTCCTCCTCCCTCCC
25363519 TACTCTCTCT
Statistics
Matches: 154, Mismatches: 14, Indels: 25
0.80 0.07 0.13
Matches are distributed among these distances:
211 5 0.03
212 6 0.04
213 39 0.25
214 18 0.12
215 25 0.16
216 11 0.07
217 25 0.16
218 13 0.08
219 5 0.03
220 7 0.05
ACGTcount: A:0.03, C:0.69, G:0.01, T:0.27
Consensus pattern (224 bp):
CCTCCCTTCCTCCTCACCTACCCACTCTCCTCTCCCTCCCCCTCTCCCCCCCCCTCTCCCCCCTC
ACCTCCTCCCCCCTCCCTCCCCTCTCCCCCCCCCCCTCCCTCCCCCTACTCCTCTCCCCCCTCTA
CTCCTCCTCCCTACTCCCCCTCCCTCCTCTACCCCTCCTCCCTCCTCCTCCCTCCCCCCCTTCGT
TTCTCCCTCTCCCCTCCCTATTCCTCCTT
Found at i:25363450 original size:3 final size:3
Alignment explanation
Indices: 25363442--25363562 Score: 60
Period size: 3 Copynumber: 40.3 Consensus size: 3
25363432 TCTCCCTCTC
* * *
25363442 CCT CCT CCT -CT CC- CC- CCT -CT ACT CCT CCT CTCT ACT CCC CCT
1 CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT C-CT CCT CCT CCT
*
25363484 CCCT CCT -CT ACC- CCT CCT CCCT CCT CCT CCCT CCCT ACT -CT CTCT
1 -CCT CCT CCT -CCT CCT CCT -CCT CCT CCT -CCT -CCT CCT CCT C-CT
* *
25363529 CCT CCCT CCT CC- CCT CCT CCC CCC CCT CCT CCT C
1 CCT -CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT C
25363563 TTCTCTCCCC
Statistics
Matches: 96, Mismatches: 8, Indels: 28
0.73 0.06 0.21
Matches are distributed among these distances:
2 16 0.17
3 58 0.60
4 22 0.23
ACGTcount: A:0.03, C:0.68, G:0.00, T:0.29
Consensus pattern (3 bp):
CCT
Found at i:25363834 original size:26 final size:26
Alignment explanation
Indices: 25363772--25364430 Score: 151
Period size: 26 Copynumber: 24.7 Consensus size: 26
25363762 TCTCCTTTTT
* *
25363772 CCTCCCCTCCCCCTCCCCCTCC-CTC
1 CCTCCCCTCCCCCCCCCCCTCCTCCC
**
25363797 CCTCCTGT-CCCCCCCCCCTCCTCCC
1 CCTCCCCTCCCCCCCCCCCTCCTCCC
* ** *
25363822 CCTCCCCTCCCCCTCCCTTTACT-CC
1 CCTCCCCTCCCCCCCCCCCTCCTCCC
*
25363847 CCTCCCCTTCCCCCCCCCTCTCCT-CC
1 CCTCCCC-TCCCCCCCCCCCTCCTCCC
*
25363873 CCT-TCCTCCCCCCCCACCTCTCCTCTTTATCAC
1 CCTCCCCTCCCCCCCC-CC-CTCCTC-----C-C
** *
25363906 CC-CCCCTTACCCCCCCCCTACTCCTC
1 CCTCCCCTCCCCCCCCCCCTCCTCC-C
* *
25363932 TCCT-CCTTCCCCTCCACCCCC-CC-CGC
1 -CCTCCCCTCCCC-CC-CCCCCTCCTCCC
**
25363958 CCTCCCCTCCCCCCCTTCCT-CT-CC
1 CCTCCCCTCCCCCCCCCCCTCCTCCC
* ** * *
25363982 CCT-CTCT-CCCCTACCTCTCCTCTC
1 CCTCCCCTCCCCCCCCCCCTCCTCCC
25364006 CC-CCCCTCCCCCCCCCCCCTCTCATCCC
1 CCTCCCCT-CCCCCCCCCCCTC-C-TCCC
**
25364034 CC-CTTACTCCCTCCCCCCCC-CCTCCC
1 CCTC-CCCTCCC-CCCCCCCCTCCTCCC
* ** * * *
25364060 CTTTTTCCTCTCCCCTCCCTCTCCTCCG
1 C-CTCCCCTC-CCCCCCCCCCTCCTCCC
** * * *
25364088 CC-CCTGT-CCCCCCTCTCT-TTCCC
1 CCTCCCCTCCCCCCCCCCCTCCTCCC
* * *
25364111 CC-CCTCCT-CCCCCTCCTCTTCTCCC
1 CCTCC-CCTCCCCCCCCCCCTCCTCCC
* * *
25364136 CC-CCCCTCCCTCCTCCTCCTTCTCCC
1 CCTCCCCTCCC-CCCCCCCCTCCTCCC
* *
25364162 CC-CCCCTCCCCCCGTCCTCCTACCTACC
1 CCTCCCCTCCCCCC--CCCCCT-CCTCCC
* * *
25364190 CCTACCTTCCCCCTTCTCTCACC-CC-CCC
1 CCTCCCCTCCCCC--C-C-CCCCTCCTCCC
* *
25364218 CCTCCTCCTCCTCCTCCCCCT-CTCCC
1 CCTCC-CCTCCCCCCCCCCCTCCTCCC
25364244 CC-CCCCTCTCCCCCCCTCCCTCCT-CC
1 CCTCCCCTC-CCCCCCC-CCCTCCTCCC
* *
25364270 CCTCCTCCTCCTACCCCCTACTCTCCCTCCC
1 CCTCC-CCTCC--CCCCC-CCCCT-CCTCCC
* * *
25364301 CCTTCCCT-CTCCCCTCCCT-CTCTCC
1 CCTCCCCTCCCCCCCCCCCTCCTC-CC
*
25364326 CCTCCCCTCCCCCCCCCTCTCCCCTCCCC
1 CCTCCCCTCCCCCCCCC-C-CTCCT-CCC
25364355 CCTCCCCTCTCCTCCCCTATCCCCTCC-CCC
1 CCTCCCCTC-CC-CCCC---CCCCTCCTCCC
*
25364385 CCTCCTCTCCCCTCCCCCCCCTCC-CCC
1 CCTCCCCT-CCC-CCCCCCCCTCCTCCC
25364412 CC-CCCCTCCCCCTCCCCCC
1 CCTCCCCTCCCCC-CCCCCC
25364431 CTCTCTCCTC
Statistics
Matches: 470, Mismatches: 94, Indels: 140
0.67 0.13 0.20
Matches are distributed among these distances:
22 6 0.01
23 12 0.03
24 66 0.14
25 72 0.15
26 106 0.23
27 48 0.10
28 38 0.08
29 53 0.11
30 28 0.06
31 20 0.04
32 6 0.01
33 13 0.03
34 2 0.00
ACGTcount: A:0.03, C:0.73, G:0.01, T:0.24
Consensus pattern (26 bp):
CCTCCCCTCCCCCCCCCCCTCCTCCC
Found at i:25364224 original size:3 final size:3
Alignment explanation
Indices: 25364218--25364281 Score: 50
Period size: 3 Copynumber: 23.0 Consensus size: 3
25364208 TCACCCCCCC
* * *
25364218 CCT CCT CCT CCT CCT CCC CCT -CT CC- CC- CCC CCT -CT CC- CCC CCT
1 CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT
25364261 CCCT CCT CC- CCT CCT CCT CCT
1 -CCT CCT CCT CCT CCT CCT CCT
25364282 ACCCCCTACT
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
2 12 0.24
3 36 0.71
4 3 0.06
ACGTcount: A:0.00, C:0.75, G:0.00, T:0.25
Consensus pattern (3 bp):
CCT
Found at i:25364334 original size:69 final size:70
Alignment explanation
Indices: 25364217--25364413 Score: 199
Period size: 69 Copynumber: 2.8 Consensus size: 70
25364207 CTCACCCCCC
** * *
25364217 CCCTCCTCCTCCTCCTCCCCCTCTCCCCCCCCCTCT-CCC-CCCCTCCCTCCTCCCCTCCTCCTC
1 CCCT-CTCCTCC-CCTATCCCTCTCCCCCCCTCTCTCCCCTCCCCT-CCTCCCCCCCT-CTCC-C
25364280 CTACCCCCTA
61 CTACCCCCTA
* *
25364290 CTCTC-CCTCCCCCT-TCCCTCTCCCCTCCCTCTCTCCCCTCCCCTCC-CCCCCCCTCTCCCCTC
1 CCCTCTCCT-CCCCTATCCCTCTCCCC-CCCTCTCTCCCCTCCCCTCCTCCCCCCCTCTCCCCTA
*
25364352 CCCCCTC
64 CCCCCTA
*
25364359 CCCTCTCCTCCCCTATCCC-CTCCCCCCCTCCTCTCCCCTCCCCCCCCTCCCCCCC
1 CCCTCTCCTCCCCTATCCCTCTCCCCCCCT-CTCTCCCCT-CCCCTCCTCCCCCCC
25364414 CCCCTCCCCC
Statistics
Matches: 107, Mismatches: 8, Indels: 20
0.79 0.06 0.15
Matches are distributed among these distances:
68 4 0.04
69 33 0.31
70 27 0.25
71 27 0.25
72 8 0.07
73 8 0.07
ACGTcount: A:0.02, C:0.76, G:0.00, T:0.23
Consensus pattern (70 bp):
CCCTCTCCTCCCCTATCCCTCTCCCCCCCTCTCTCCCCTCCCCTCCTCCCCCCCTCTCCCCTACC
CCCTA
Found at i:25388819 original size:44 final size:44
Alignment explanation
Indices: 25388753--25388841 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
25388743 AATCGTTGAG
*
25388753 TTGAGTCCGAGTTCACTTATGGGTGGGTTACATGGTAGCTTGGC
1 TTGAGTCCGAGTTCACTCATGGGTGGGTTACATGGTAGCTTGGC
*
25388797 TTGAGTCCGAGTTCACTCATGGGTGGGTTACGTGGTAGCTTGGC
1 TTGAGTCCGAGTTCACTCATGGGTGGGTTACATGGTAGCTTGGC
25388841 T
1 T
25388842 ACACATATAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.15, C:0.17, G:0.35, T:0.34
Consensus pattern (44 bp):
TTGAGTCCGAGTTCACTCATGGGTGGGTTACATGGTAGCTTGGC
Found at i:25395958 original size:42 final size:44
Alignment explanation
Indices: 25395856--25395965 Score: 136
Period size: 42 Copynumber: 2.5 Consensus size: 44
25395846 TTATTATGTC
**
25395856 AGACCATGTCTAGGATGTTGGCATCGACTTATGATTTACGTGTA
1 AGACCATGTCTAGGACATTGGCATCGACTTATGATTTACGTGTA
* *
25395900 AGACCATGTCTGGGACATTGGCATCGTA-TT-TGATTT-CGTTTA
1 AGACCATGTCTAGGACATTGGCATCG-ACTTATGATTTACGTGTA
* *
25395942 AGACCCTGTCTAGGACAGTGGCAT
1 AGACCATGTCTAGGACATTGGCAT
25395966 TGAAATTTGG
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
42 26 0.45
43 6 0.10
44 25 0.43
45 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (44 bp):
AGACCATGTCTAGGACATTGGCATCGACTTATGATTTACGTGTA
Found at i:25395974 original size:43 final size:43
Alignment explanation
Indices: 25395856--25396000 Score: 134
Period size: 42 Copynumber: 3.4 Consensus size: 43
25395846 TTATTATGTC
* *
25395856 AGACCATGTCTAGGA-TGTTGGCATCGACTTATGATTTACGTGTA
1 AGACCATGTCTAGGACAG-TGGCATCGAATT-TGATTTACGTGTA
* * * *
25395900 AGACCATGTCTGGGACATTGGCATCGTATTTGATTT-CGTTTA
1 AGACCATGTCTAGGACAGTGGCATCGAATTTGATTTACGTGTA
* * * *
25395942 AGACCCTGTCTAGGACAGTGGCATTGAAATTTG-GTTACATGTA
1 AGACCATGTCTAGGACAGTGGCATCG-AATTTGATTTACGTGTA
* *
25395985 AGACCACGTCTGGGAC
1 AGACCATGTCTAGGAC
25396001 GTTGCATTGT
Statistics
Matches: 81, Mismatches: 17, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
42 29 0.36
43 28 0.35
44 24 0.30
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.32
Consensus pattern (43 bp):
AGACCATGTCTAGGACAGTGGCATCGAATTTGATTTACGTGTA
Found at i:25410996 original size:46 final size:46
Alignment explanation
Indices: 25410946--25411121 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
25410936 TGGTTGAGCA
25410946 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
25410992 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
25411037 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
25411085 CCCGAGA-TCGTTGAGTTGAGCCCGAGTTCACTAATGG
1 TCCGA-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
25411122 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.56
47 30 0.28
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:25411102 original size:93 final size:93
Alignment explanation
Indices: 25410943--25411113 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
25410933 GGATGGTTGA
* *
25410943 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
25411008 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGCCCGAGTTCGTGAAATGTAACTAG
25411036 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGA-TCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGA-ACTCGTTGAG
25411100 TTGAGCCCGAGTTC
65 TTGAGCCCGAGTTC
25411114 ACTAATGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
93 73 0.99
94 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGCCCGAGTTCGTGAAATGTAACTAG
Found at i:25413096 original size:39 final size:39
Alignment explanation
Indices: 25413042--25413169 Score: 204
Period size: 39 Copynumber: 3.3 Consensus size: 39
25413032 TGCATGGTAT
25413042 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
*
25413081 TGGAAATATATCCGGACTTGAAGTCCGCAGGCTTTATGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
* * *
25413120 TGGAAATATATCCGGACTTAAAGTCCGCAGGC-TAAGTGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTA-TGC
25413159 TGGAAAAATAT
1 TGGAAAAATAT
25413170 TCGGGCTAAG
Statistics
Matches: 84, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
38 2 0.02
39 82 0.98
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (39 bp):
TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
Found at i:25413198 original size:39 final size:39
Alignment explanation
Indices: 25413166--25413342 Score: 273
Period size: 39 Copynumber: 4.5 Consensus size: 39
25413156 TGCTGGAAAA
*
25413166 ATATTCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
** **
25413205 ATATCCGGGCTAAGTCCTAAAGGCATTCGTGCTGGTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
**
25413244 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGCGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
25413283 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
25413322 ATATCCGGGCTTAAAGTCCCG
1 ATATCCGGGC-T-AAGTCCCG
25413343 CATGCTTTGT
Statistics
Matches: 125, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 116 0.93
40 1 0.01
41 8 0.06
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.28
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
Found at i:25413199 original size:78 final size:78
Alignment explanation
Indices: 25413042--25413342 Score: 254
Period size: 78 Copynumber: 3.8 Consensus size: 78
25413032 TGCATGGTAT
* * *
25413042 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTA-TGCTGGAAATATATCCGGACTTGAAGT-
1 TGGAAATATATCCGGACTT-AAGTCCGCAGGCATTAGTGCTGGAAATATATCCGGGC-T-AAGTC
* **
25413105 CCGCAGGC-TTTATGC
63 CCGAAGGCATTCGTGC
* * *
25413120 TGGAAATATATCCGGACTTAAAGTCCGCAGGC-TAAGTGCTGGAAAAATATTCGGGCTAAGTCCC
1 TGGAAATATATCCGGACTT-AAGTCCGCAGGCATTAGTGCTGGAAATATATCCGGGCTAAGTCCC
25413184 GAAGGCATTCGTGC
65 GAAGGCATTCGTGC
* * * ** * ***
25413198 TGGTATTATATCCGGGC-TAAGTCCTAAAGGCATTCGTGCTGGTGCTATATCCGGGCTAAGTCCC
1 TGGAAATATATCCGGACTTAAGTCC-GCAGGCATTAGTGCTGGAAATATATCCGGGCTAAGTCCC
25413262 GAAGGCATTCGTGC
65 GAAGGCATTCGTGC
*** * * * * *
25413276 TGGCGTTATATCCGGGC-TAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCGGGCTTAAAGTC
1 TGGAAATATATCCGGACTTAAGT-CCGCAGGCATTAGTGCTGGAAATATATCCGGGC-T-AAGTC
25413340 CCG
63 CCG
25413343 CATGCTTTGT
Statistics
Matches: 189, Mismatches: 26, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
76 10 0.05
77 15 0.08
78 153 0.81
79 3 0.02
80 8 0.04
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (78 bp):
TGGAAATATATCCGGACTTAAGTCCGCAGGCATTAGTGCTGGAAATATATCCGGGCTAAGTCCCG
AAGGCATTCGTGC
Found at i:25421288 original size:40 final size:40
Alignment explanation
Indices: 25421171--25421392 Score: 269
Period size: 39 Copynumber: 5.7 Consensus size: 40
25421161 AGCTCTCGTT
*
25421171 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
25421211 -AAATGCCTTCGGGACTTAACCC-GATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
25421249 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
25421289 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
25421328 CAAATGCC-TC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
25421368 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
25421393 CATCATTCAA
Statistics
Matches: 159, Mismatches: 15, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
37 2 0.01
38 15 0.09
39 90 0.57
40 49 0.31
41 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:25429305 original size:119 final size:120
Alignment explanation
Indices: 25429123--25429345 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
25429113 TCCTCGTTCA
*
25429123 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
25429188 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
25429243 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
25429305 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
25429346 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:25429345 original size:40 final size:40
Alignment explanation
Indices: 25429121--25429345 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
25429111 GCTCCTCGTT
* *
25429121 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
25429161 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
25429201 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
25429241 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
25429280 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
25429321 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
25429346 CATCATTCAA
Statistics
Matches: 164, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 119 0.73
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:25431431 original size:34 final size:34
Alignment explanation
Indices: 25431390--25431457 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 34
25431380 AAATATGTCA
*
25431390 TTTTGGATTGGTTTGAATGAATGTAAGTTTGAAT
1 TTTTGGATTGGTTTGAATGAATGTAAGCTTGAAT
* *
25431424 TTTTGGATTGTTTTGAATGAATGTGAGCTTGAAT
1 TTTTGGATTGGTTTGAATGAATGTAAGCTTGAAT
25431458 AAGTTAAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.25, C:0.01, G:0.26, T:0.47
Consensus pattern (34 bp):
TTTTGGATTGGTTTGAATGAATGTAAGCTTGAAT
Found at i:25431868 original size:42 final size:43
Alignment explanation
Indices: 25431805--25431922 Score: 123
Period size: 42 Copynumber: 2.8 Consensus size: 43
25431795 AACTTATGAT
* *
25431805 TTACGTGTAAGACCATGTCTGGGACATTGGCATCG-TATTTAA
1 TTACGTGTAAGACCCTATCTGGGACATTGGCATCGATATTTAA
** * * * *
25431847 TTTTGTGTAAGACCCTATCTGGGATAGTGGCATTGATATTTGA
1 TTACGTGTAAGACCCTATCTGGGACATTGGCATCGATATTTAA
* *
25431890 TTACATGTAAGA-CCAAGTCTGGGACATTGGCAT
1 TTACGTGTAAGACCCTA-TCTGGGACATTGGCAT
25431923 TGTACGAGCT
Statistics
Matches: 60, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
42 31 0.52
43 29 0.48
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (43 bp):
TTACGTGTAAGACCCTATCTGGGACATTGGCATCGATATTTAA
Found at i:25431911 original size:43 final size:43
Alignment explanation
Indices: 25431805--25431924 Score: 127
Period size: 43 Copynumber: 2.8 Consensus size: 43
25431795 AACTTATGAT
* * * *
25431805 TTACGTGTAAGACCATGTCTGGGACATTGGCATCG-TATTTAA
1 TTACGTGTAAGACCAAGTCTGGGACAGTGGCATTGATATTTGA
** * *
25431847 TTTTGTGTAAGACCCTA-TCTGGGATAGTGGCATTGATATTTGA
1 TTACGTGTAAGA-CCAAGTCTGGGACAGTGGCATTGATATTTGA
* *
25431890 TTACATGTAAGACCAAGTCTGGGACATTGGCATTG
1 TTACGTGTAAGACCAAGTCTGGGACAGTGGCATTG
25431925 TACGAGCTTC
Statistics
Matches: 61, Mismatches: 14, Indels: 5
0.76 0.17 0.06
Matches are distributed among these distances:
42 28 0.46
43 33 0.54
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (43 bp):
TTACGTGTAAGACCAAGTCTGGGACAGTGGCATTGATATTTGA
Found at i:25436245 original size:27 final size:26
Alignment explanation
Indices: 25436199--25436347 Score: 190
Period size: 27 Copynumber: 5.5 Consensus size: 26
25436189 AAACATACAT
*
25436199 CACATAGGGGCAAAACAGTCATCTTAC
1 CACATAAGGGCAAAACAGTCAT-TTAC
* * *
25436226 CATATAAGGGCAAGATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCA-TTTAC
* *
25436253 GACATAAGGGCAAAACAATCATTTCAC
1 CACATAAGGGCAAAACAGTCATTT-AC
*
25436280 CACATAAGGGAAAAACAGTCATTCTAC
1 CACATAAGGGCAAAACAGTCATT-TAC
25436307 CACATAAGGGCAAAACAGTCATTCTAC
1 CACATAAGGGCAAAACAGTCATT-TAC
25436334 CACATAAGGGCAAA
1 CACATAAGGGCAAA
25436348 TCGAGAACTT
Statistics
Matches: 106, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
26 3 0.03
27 101 0.95
28 2 0.02
ACGTcount: A:0.42, C:0.22, G:0.17, T:0.19
Consensus pattern (26 bp):
CACATAAGGGCAAAACAGTCATTTAC
Found at i:25436339 original size:81 final size:81
Alignment explanation
Indices: 25436199--25436347 Score: 219
Period size: 81 Copynumber: 1.8 Consensus size: 81
25436189 AAACATACAT
* * * * * * *
25436199 CACATAGGGGCAAAACAGTCATCTTACCATATAAGGGCAAGATAGTCATTTTACGACATAAGGGC
1 CACATAAGGGAAAAACAGTCATCTTACCACATAAGGGCAAAACAGTCATTCTACCACATAAGGGC
25436264 AAAACAATCATTTCAC
66 AAAACAATCATTTCAC
25436280 CACATAAGGGAAAAACAGTCAT-TCTACCACATAAGGGCAAAACAGTCATTCTACCACATAAGGG
1 CACATAAGGGAAAAACAGTCATCT-TACCACATAAGGGCAAAACAGTCATTCTACCACATAAGGG
25436344 CAAA
65 CAAA
25436348 TCGAGAACTT
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
80 1 0.02
81 59 0.98
ACGTcount: A:0.42, C:0.22, G:0.17, T:0.19
Consensus pattern (81 bp):
CACATAAGGGAAAAACAGTCATCTTACCACATAAGGGCAAAACAGTCATTCTACCACATAAGGGC
AAAACAATCATTTCAC
Found at i:25437719 original size:122 final size:122
Alignment explanation
Indices: 25437502--25437729 Score: 305
Period size: 122 Copynumber: 1.9 Consensus size: 122
25437492 ACTAAAAAAA
* * * * * * * *
25437502 GCATTAGCGGGGTTTTTGAGCAAAGCGCCGCAAATAACCTAAGCCCAACGACACCGTTTTCTGAG
1 GCATTAGCGGCGCTTTTGAGAAAAGCGCCGCAAAAAACCCAAGCCCAACGACACCATTTTCTAAA
* * *
25437567 CTTTCGGGGATTTAGCGACGTTTTTGGTAAAGCGCCGCTAATGCCCAGGGCATCTAG
66 CTTTCAGAGATTTAGCGACGTTTTTCGTAAAGCGCCGCTAATGCCCAGGGCATCTAG
**
25437624 GCATTAGCGGCGCTTTTG-GAAAAGCGCCGCAAAAAAACCCAAGCCCAACGATGCCATTTTCTAA
1 GCATTAGCGGCGCTTTTGAGAAAAGCGCCGC-AAAAAACCCAAGCCCAACGACACCATTTTCTAA
* *
25437688 ACTTTCAGAGATTTAGCGGCGTTTTTCGTAAAGCGTCGCTAA
65 ACTTTCAGAGATTTAGCGACGTTTTTCGTAAAGCGCCGCTAA
25437730 AGGTAAGCAA
Statistics
Matches: 90, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
121 11 0.12
122 79 0.88
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (122 bp):
GCATTAGCGGCGCTTTTGAGAAAAGCGCCGCAAAAAACCCAAGCCCAACGACACCATTTTCTAAA
CTTTCAGAGATTTAGCGACGTTTTTCGTAAAGCGCCGCTAATGCCCAGGGCATCTAG
Found at i:25438239 original size:147 final size:145
Alignment explanation
Indices: 25437718--25438228 Score: 914
Period size: 145 Copynumber: 3.5 Consensus size: 145
25437708 GTTTTTCGTA
*
25437718 AAGCGTCGCTAAAGGTAAGCAATAGCGGCGTTTCCTATAAAAACGCCGCAAAAAATAAATCAATT
1 AAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTCCTATAAAAACGCCGCAAAAAATAAATCAATT
*
25437783 TATAAAAAAATAAAAAAAATTAGAATAGCAAAGCGGCGTCGTTTTGTTCAAAATGAAAAAATTTT
66 TATAAAAAAATAAAAAAAATTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTT
*
25437848 GCGGCGCTTTATATG
131 GCGGCGCTTTATAAG
*
25437863 AAGCGCCGCTAAAGGTAAGCAATAGCGACGTTTCCTATAAAAACGCCGCAAAAAATAAATCAATT
1 AAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTCCTATAAAAACGCCGCAAAAAATAAATCAATT
*
25437928 TATAAAAAAATAAAAAAAATTAGAATAGCAAAAAGGCGTCGTTTTGTTCAAAATGAAAAAATTTT
66 TATAAAAAAATAAAAAAAATTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTT
25437993 GCGGCGCTTTATAAG
131 GCGGCGCTTTATAAG
* *
25438008 AAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAACT
1 AAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTCCTATAAAAACGCCGCAAAAAATAAATCAATT
**
25438073 TATAAAAAAAATAAAAAATTGTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATT
66 TAT-AAAAAAATAAAAAA-AATTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATT
25438138 TTGCGGCGCTTTATAAG
129 TTGCGGCGCTTTATAAG
*
25438155 AAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAATT
1 AAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTCCTATAAAAACGCCGCAAAAAATAAATCAATT
25438220 TATAAAAAA
66 TATAAAAAA
25438229 TTTCCCAAAT
Statistics
Matches: 352, Mismatches: 12, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
145 205 0.58
146 20 0.06
147 127 0.36
ACGTcount: A:0.44, C:0.15, G:0.17, T:0.24
Consensus pattern (145 bp):
AAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTCCTATAAAAACGCCGCAAAAAATAAATCAATT
TATAAAAAAATAAAAAAAATTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTT
GCGGCGCTTTATAAG
Found at i:25438823 original size:14 final size:15
Alignment explanation
Indices: 25438795--25438827 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
25438785 AAGTTTTATA
25438795 GATTATGGAATTAGG
1 GATTATGGAATTAGG
25438810 GATTATGG-ATTAGG
1 GATTATGGAATTAGG
25438824 GATT
1 GATT
25438828 CTGATTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.36
Consensus pattern (15 bp):
GATTATGGAATTAGG
Found at i:25438869 original size:14 final size:14
Alignment explanation
Indices: 25438850--25438889 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
25438840 TTAATGTGAT
* *
25438850 TTAAGGTTTATGGG
1 TTAAGGGTTAGGGG
25438864 TTAAGGGTTAGGGG
1 TTAAGGGTTAGGGG
25438878 TTAAGGGTTAGG
1 TTAAGGGTTAGG
25438890 TTAGGGGTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.23, C:0.00, G:0.42, T:0.35
Consensus pattern (14 bp):
TTAAGGGTTAGGGG
Found at i:25438906 original size:14 final size:12
Alignment explanation
Indices: 25438862--25438900 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
25438852 AAGGTTTATG
25438862 GGTTAAGGGTTA
1 GGTTAAGGGTTA
25438874 GGGGTTAAGGGTTA
1 --GGTTAAGGGTTA
*
25438888 GGTTAGGGGTTA
1 GGTTAAGGGTTA
25438900 G
1 G
25438901 ATGTTAATAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 12 0.50
14 12 0.50
ACGTcount: A:0.21, C:0.00, G:0.49, T:0.31
Consensus pattern (12 bp):
GGTTAAGGGTTA
Found at i:25439203 original size:7 final size:7
Alignment explanation
Indices: 25439193--25439247 Score: 65
Period size: 7 Copynumber: 7.7 Consensus size: 7
25439183 GATTTAAGGT
25439193 TTAGGGG
1 TTAGGGG
*
25439200 TTAGTGG
1 TTAGGGG
25439207 TTAGGGG
1 TTAGGGG
25439214 TTAGGGG
1 TTAGGGG
* *
25439221 TTAAGAG
1 TTAGGGG
*
25439228 TTAGGGAT
1 TTAGGG-G
25439236 TTAGGGG
1 TTAGGGG
25439243 TTAGG
1 TTAGG
25439248 ACTTAAGGAT
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
7 33 0.85
8 6 0.15
ACGTcount: A:0.20, C:0.00, G:0.47, T:0.33
Consensus pattern (7 bp):
TTAGGGG
Found at i:25439203 original size:21 final size:21
Alignment explanation
Indices: 25439179--25439255 Score: 75
Period size: 21 Copynumber: 3.6 Consensus size: 21
25439169 GGTTTAAAGT
*
25439179 TTAGGATTTAAGGTTTAGGGG
1 TTAGGAGTTAAGGTTTAGGGG
* *
25439200 TTAGTG-GTTAGGGGTTAGGGG
1 TTAG-GAGTTAAGGTTTAGGGG
* *
25439221 TTAAGAGTTAGGGATTTAGGGG
1 TTAGGAGTTAAGG-TTTAGGGG
*
25439243 TTAGGACTTAAGG
1 TTAGGAGTTAAGG
25439256 ATTCAAGGGT
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
20 1 0.02
21 26 0.58
22 18 0.40
ACGTcount: A:0.23, C:0.01, G:0.42, T:0.34
Consensus pattern (21 bp):
TTAGGAGTTAAGGTTTAGGGG
Found at i:25439594 original size:19 final size:18
Alignment explanation
Indices: 25439565--25439618 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 18
25439555 GGACCAAATT
*
25439565 ATAAGAAATAAAATTAAA
1 ATAAAAAATAAAATTAAA
* *
25439583 ATACAAAAATAAAAATGAA
1 ATA-AAAAATAAAATTAAA
25439602 ATAAAAACACTAAAATT
1 ATAAAAA-A-TAAAATT
25439619 TTTAATTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 7 0.24
19 16 0.55
20 6 0.21
ACGTcount: A:0.70, C:0.06, G:0.04, T:0.20
Consensus pattern (18 bp):
ATAAAAAATAAAATTAAA
Found at i:25439911 original size:16 final size:15
Alignment explanation
Indices: 25439890--25439929 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
25439880 TGGTTGAAAT
25439890 ATTTATTCCCCTCCAA
1 ATTTATTCCCCTCC-A
*
25439906 ATTTATTCCCCTTCA
1 ATTTATTCCCCTCCA
25439921 ATTT-TTCCC
1 ATTTATTCCC
25439930 ATACCCGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 5 0.22
15 5 0.22
16 13 0.57
ACGTcount: A:0.20, C:0.35, G:0.00, T:0.45
Consensus pattern (15 bp):
ATTTATTCCCCTCCA
Found at i:25444342 original size:43 final size:43
Alignment explanation
Indices: 25444294--25444475 Score: 265
Period size: 43 Copynumber: 4.2 Consensus size: 43
25444284 GCTTTTATCA
* * *
25444294 AAAGCGTCGCTAAAGATCATGTTTTTTAGCGGCGTTTGTGGTT
1 AAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGGGT
* * * * **
25444337 AAAGCGTCGTTAAAGATCATGTTCTTTAGCGGCATTTATGTTT
1 AAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGGGT
*
25444380 AAAGCGCCGCTAAAGATCATGTTCTTTAGCAGCGTTTGTGGGT
1 AAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGGGT
*
25444423 AAGGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGGGT
1 AAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGGGT
25444466 AAAGCGCCGC
1 AAAGCGCCGC
25444476 AAGTACTTTT
Statistics
Matches: 124, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 124 1.00
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (43 bp):
AAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGGGT
Found at i:25445122 original size:78 final size:78
Alignment explanation
Indices: 25444992--25445255 Score: 331
Period size: 78 Copynumber: 3.4 Consensus size: 78
25444982 TTCCAACCCA
* * * *
25444992 AATGCCTTCGGAACTTAGCCCGAATATAACATCAGCACGAATGCCTTCGGGACTTAGCCCGGATA
1 AATGCCTTCGGGACTTAGCCCGGATATAAAATCAGCACGAATGCCTTTGGGACTTAGCCCGGATA
*
25445057 TACTATCAGCACG
66 TAATATCAGCACG
* * * * *
25445070 AATGCCTTCGGGACTTAGCCCGGATATAATACCAACACGAATGCCTTTGGGACTTAACCCAGATA
1 AATGCCTTCGGGACTTAGCCCGGATATAAAATCAGCACGAATGCCTTTGGGACTTAGCCCGGATA
25445135 TAATATCAGCACG
66 TAATATCAGCACG
* * *
25445148 AATGCCTTCGGGACTGAACCCGGATATAAAATCAGTACGAATGCCTTTGGGACTTAGCCCGGATA
1 AATGCCTTCGGGACTTAGCCCGGATATAAAATCAGCACGAATGCCTTTGGGACTTAGCCCGGATA
*
25445213 TAAATCTCA-CAC-
66 T-AATATCAGCACG
* *
25445225 AAGGCCTGT-GGGTCTTAGCCCGG-T-TAAAATC
1 AATGCCT-TCGGGACTTAGCCCGGATATAAAATC
25445256 CTCAAATATC
Statistics
Matches: 162, Mismatches: 22, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
75 7 0.04
76 1 0.01
77 17 0.10
78 131 0.81
79 6 0.04
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (78 bp):
AATGCCTTCGGGACTTAGCCCGGATATAAAATCAGCACGAATGCCTTTGGGACTTAGCCCGGATA
TAATATCAGCACG
Found at i:25445216 original size:39 final size:39
Alignment explanation
Indices: 25444992--25445215 Score: 322
Period size: 39 Copynumber: 5.7 Consensus size: 39
25444982 TTCCAACCCA
* * *
25444992 AATGCCTTCGGAACTTAGCCCGAATATAACATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
*
25445031 AATGCCTTCGGGACTTAGCCCGGATATACTATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
* *
25445070 AATGCCTTCGGGACTTAGCCCGGATATAATACCAACACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
* * *
25445109 AATGCCTTTGGGACTTAACCCAGATATAATATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
* * * *
25445148 AATGCCTTCGGGACTGAACCCGGATATAAAATCAGTACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
*
25445187 AATGCCTTTGGGACTTAGCCCGGATATAA
1 AATGCCTTCGGGACTTAGCCCGGATATAA
25445216 ATCTCACACA
Statistics
Matches: 165, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 165 1.00
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
Found at i:25454809 original size:29 final size:27
Alignment explanation
Indices: 25454791--25454860 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
25454781 ATATTAAGTC
25454791 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
25454818 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
25454846 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
25454861 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:25454854 original size:28 final size:28
Alignment explanation
Indices: 25454791--25454888 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
25454781 ATATTAAGTC
*
25454791 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
25454818 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
25454846 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
25454875 CGCACACTTAGTGC
1 CGCACACTTAGTGC
25454889 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:25463787 original size:39 final size:39
Alignment explanation
Indices: 25463732--25463916 Score: 282
Period size: 39 Copynumber: 4.7 Consensus size: 39
25463722 TTCCAACCCA
* *
25463732 AATGCCTTCGGAACTTAGCCCGGATATAACATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
*
25463771 AATGCCTTCGGGACTTAGCCCGGATATAATACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
* *
25463810 AATGCCTAT-GGGACTTAACCTGGATATAATATCAGCACG
1 AATGCCT-TCGGGACTTAGCCCGGATATAATATCAGCACG
* * *
25463849 AATGCCTTCGGGACTTAACCCGGATATAATATTAGTACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
25463888 AATGCCTTCGGGACTTAGCCCGGATATAA
1 AATGCCTTCGGGACTTAGCCCGGATATAA
25463917 ATCTCACACA
Statistics
Matches: 134, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
38 1 0.01
39 132 0.99
40 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
Found at i:25466763 original size:27 final size:27
Alignment explanation
Indices: 25466733--25466837 Score: 147
Period size: 27 Copynumber: 3.9 Consensus size: 27
25466723 TTAGTTTACC
25466733 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
25466760 AAATTAGCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* ** *
25466787 AAATTACCGAAATACCCCTACTTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
*
25466814 AAATTACCAAAATACCCTTGGTTT
1 AAATTACCAAAATACCCCTGGTTT
25466838 ACAATGTAAC
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:25466800 original size:54 final size:54
Alignment explanation
Indices: 25466733--25466837 Score: 165
Period size: 54 Copynumber: 1.9 Consensus size: 54
25466723 TTAGTTTACC
** *
25466733 AAATTACCAAAATACCCCTGGTTTGTAAAATTAGCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTACTTTGTAAAATTACCAAAATACCCTTGGTTTGTA
* *
25466787 AAATTACCGAAATACCCCTACTTTGTGAAATTACCAAAATACCCTTGGTTT
1 AAATTACCAAAATACCCCTACTTTGTAAAATTACCAAAATACCCTTGGTTT
25466838 ACAATGTAAC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTACTTTGTAAAATTACCAAAATACCCTTGGTTTGTA
Found at i:25467839 original size:24 final size:24
Alignment explanation
Indices: 25467788--25467982 Score: 302
Period size: 25 Copynumber: 8.0 Consensus size: 24
25467778 GCTTTATCAT
*
25467788 ATAACTGGTGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
25467813 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
25467837 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
25467861 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
25467885 ATAACTGGGGCATAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
25467910 ATAACTGGGGCATAAGCCTCTTTTA
1 ATAACTGGGGCATAAGCC-CTTTTA
*
25467935 ATAATTGGGGCATAAGCCCTTCTTA
1 ATAACTGGGGCATAAGCCCTT-TTA
25467960 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
25467983 GCACTTCCTC
Statistics
Matches: 159, Mismatches: 7, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
24 78 0.49
25 80 0.50
26 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:25467865 original size:48 final size:48
Alignment explanation
Indices: 25467788--25467982 Score: 302
Period size: 48 Copynumber: 4.0 Consensus size: 48
25467778 GCTTTATCAT
* *
25467788 ATAACTGGTGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTA
*
25467837 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
25467885 ATAACTGGGGCATAAGCCCTTTTTAATAACTGGGGCATAAGCCTCTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAAGCC-CTTTTA
*
25467935 ATAATTGGGGCATAAGCCCTTCTTAATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTT-TTAATAACTGGGGCATAAGCCCTTTT
25467983 GCACTTCCTC
Statistics
Matches: 137, Mismatches: 5, Indels: 8
0.91 0.03 0.05
Matches are distributed among these distances:
48 51 0.37
49 41 0.30
50 45 0.33
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:25468057 original size:20 final size:20
Alignment explanation
Indices: 25468032--25468098 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
25468022 TTATGAAGAC
25468032 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
25468052 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
25468072 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
25468092 ACCATGT
1 ATCATGT
25468099 TTATCGAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:25468063 original size:11 final size:11
Alignment explanation
Indices: 25468032--25468087 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
25468022 TTATGAAGAC
25468032 ATCATGTGCAT
1 ATCATGTGCAT
*
25468043 ATCA--TACAT
1 ATCATGTGCAT
25468052 ATCATGTGCAT
1 ATCATGTGCAT
*
25468063 ATCA--TACAT
1 ATCATGTGCAT
*
25468072 GTCATGTGCAT
1 ATCATGTGCAT
25468083 ATCAT
1 ATCAT
25468088 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:25468167 original size:25 final size:25
Alignment explanation
Indices: 25468135--25468182 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
25468125 ATATATAAAC
* * *
25468135 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
25468160 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
25468183 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:25469930 original size:27 final size:27
Alignment explanation
Indices: 25469895--25469969 Score: 114
Period size: 27 Copynumber: 2.8 Consensus size: 27
25469885 GGATGTTACA
*
25469895 TACAAAATTACCAAAATACCTTTAGTT
1 TACAAAATTACCAAAATACCCTTAGTT
25469922 TACAAAATTACCAAAATACCCTTAGTT
1 TACAAAATTACCAAAATACCCTTAGTT
** *
25469949 TGTAAAATTACAAAAATACCC
1 TACAAAATTACCAAAATACCC
25469970 CTGTAGGGTA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.47, C:0.20, G:0.04, T:0.29
Consensus pattern (27 bp):
TACAAAATTACCAAAATACCCTTAGTT
Found at i:25469984 original size:27 final size:27
Alignment explanation
Indices: 25469962--25470095 Score: 160
Period size: 27 Copynumber: 5.0 Consensus size: 27
25469952 AAAATTACAA
**
25469962 AAATACCCCTGTAGGGTAGAATTATTG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
25469989 AAATACCCCTGTAGGGTATAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
25470016 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
25470043 AAATACCCTTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * * *
25470070 AGATAACCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
25470096 ATTTTGCCCC
Statistics
Matches: 94, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 94 1.00
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:25469985 original size:54 final size:52
Alignment explanation
Indices: 25469927--25470067 Score: 138
Period size: 54 Copynumber: 2.6 Consensus size: 52
25469917 TAGTTTACAA
* *
25469927 AATTACCAAAATACCCTTAGTTTGTAAAATTACAAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTAG--GGTAAAATTACAAAAATACCCCTGTAGGGTAG
** * ** *
25469981 AATTATTGAAATACCCCTGTAGGGTATAATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATA-CCCT-TAGGGTAAAATTACAAAAATACCCCTGTAGGGTAG
* *
25470035 AAATACCGAAATACCCTTGTAGGGTAGAATTAC
1 AATTACCGAAATACCC-T-TAGGGTAAAATTAC
25470068 TGAGATAACC
Statistics
Matches: 72, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
53 3 0.04
54 62 0.86
55 4 0.06
56 3 0.04
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.28
Consensus pattern (52 bp):
AATTACCGAAATACCCTTAGGGTAAAATTACAAAAATACCCCTGTAGGGTAG
Found at i:25470012 original size:81 final size:81
Alignment explanation
Indices: 25469925--25470096 Score: 204
Period size: 81 Copynumber: 2.1 Consensus size: 81
25469915 TTTAGTTTAC
** *
25469925 AAAATTACCAAAATACCCTTAGT-TTGTA-AAATTACAAAAATACCCCTGTAGGGTAGAATTATT
1 AAAATTACCAAAATACCCTT-GTAGGGTAGAAA-TACAAAAATACCCCTGTAGGGTAGAATTACT
*
25469988 GAAATACCCCTGTAGGGT
64 GAAATAACCCTGTAGGGT
* * ** *
25470006 ATAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAATTACTGA
1 AAAATTACCAAAATACCCTTGTAGGGTAGAAATACAAAAATACCCCTGTAGGGTAGAATTACTGA
* * *
25470071 GATAACCTTGTGGGGT
66 AATAACCCTGTAGGGT
25470087 AAAATTACCA
1 AAAATTACCA
25470097 TTTTGCCCCT
Statistics
Matches: 75, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
80 2 0.03
81 70 0.93
82 3 0.04
ACGTcount: A:0.38, C:0.17, G:0.18, T:0.27
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTTGTAGGGTAGAAATACAAAAATACCCCTGTAGGGTAGAATTACTGA
AATAACCCTGTAGGGT
Found at i:25471157 original size:27 final size:27
Alignment explanation
Indices: 25471120--25471320 Score: 251
Period size: 27 Copynumber: 7.4 Consensus size: 27
25471110 TAAATTGTAC
25471120 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
25471147 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
25471174 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25471200 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
25471228 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
25471256 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25471283 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
25471310 AGCACTGAGTG
1 AGCACTAAGTG
25471321 AGCGGACTCA
Statistics
Matches: 152, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
27 129 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:25478428 original size:27 final size:27
Alignment explanation
Indices: 25478391--25478591 Score: 251
Period size: 27 Copynumber: 7.4 Consensus size: 27
25478381 TAAATTGTAC
25478391 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
25478418 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
25478445 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25478471 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
25478499 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
25478527 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25478554 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
25478581 AGCACTGAGTG
1 AGCACTAAGTG
25478592 AGCGGACTCA
Statistics
Matches: 152, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
27 129 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:25479986 original size:21 final size:21
Alignment explanation
Indices: 25479960--25480010 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
25479950 GATATTGTTA
25479960 TACATGATAGGACATGATATG
1 TACATGATAGGACATGATATG
* **
25479981 TACATGATATGTTATGATATG
1 TACATGATAGGACATGATATG
*
25480002 CACATGATA
1 TACATGATA
25480011 TGCTATGATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.33
Consensus pattern (21 bp):
TACATGATAGGACATGATATG
Found at i:25479987 original size:11 final size:11
Alignment explanation
Indices: 25479960--25480012 Score: 65
Period size: 11 Copynumber: 5.0 Consensus size: 11
25479950 GATATTGTTA
25479960 TACATGATA-G
1 TACATGATATG
*
25479970 GACATGATATG
1 TACATGATATG
25479981 TACATGATATG
1 TACATGATATG
*
25479992 T-TATGATATG
1 TACATGATATG
*
25480002 CACATGATATG
1 TACATGATATG
25480013 CTATGATATA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
10 16 0.44
11 20 0.56
ACGTcount: A:0.36, C:0.09, G:0.21, T:0.34
Consensus pattern (11 bp):
TACATGATATG
Found at i:25480011 original size:21 final size:21
Alignment explanation
Indices: 25479973--25480021 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
25479963 ATGATAGGAC
* *
25479973 ATGATATGTACATGATATGTT
1 ATGATATGCACATGATATGCT
25479994 ATGATATGCACATGATATGCT
1 ATGATATGCACATGATATGCT
25480015 ATGATAT
1 ATGATAT
25480022 ACTTATTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.39
Consensus pattern (21 bp):
ATGATATGCACATGATATGCT
Found at i:25480103 original size:25 final size:25
Alignment explanation
Indices: 25480069--25480138 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
25480059 AGGAAGTGCT
*
25480069 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
25480094 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
25480119 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
25480139 ATTAAAGAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:25482831 original size:43 final size:43
Alignment explanation
Indices: 25482708--25482854 Score: 179
Period size: 43 Copynumber: 3.4 Consensus size: 43
25482698 CCCAGATATT
* * * * *
25482708 GTCTTACATGTTATCAC-ATATCAATGCCACTGTCCCAAACAGG
1 GTCTTACACGTAATCACAATA-CAATGCCAATGTCCCAGACAAG
* * *
25482751 GTCTCACACGAAATCATAATACAATGCCAATGTCCCAGACAAG
1 GTCTTACACGTAATCACAATACAATGCCAATGTCCCAGACAAG
*
25482794 GTCTTACACGTAATCACAATACAATGCCAATGTCCCAGACATG
1 GTCTTACACGTAATCACAATACAATGCCAATGTCCCAGACAAG
* *
25482837 ATCTTACATGTAATCACA
1 GTCTTACACGTAATCACA
25482855 TCTCGATAAC
Statistics
Matches: 89, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
43 86 0.97
44 3 0.03
ACGTcount: A:0.35, C:0.27, G:0.13, T:0.24
Consensus pattern (43 bp):
GTCTTACACGTAATCACAATACAATGCCAATGTCCCAGACAAG
Found at i:25486510 original size:33 final size:33
Alignment explanation
Indices: 25486471--25486542 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
25486461 ATCAGTAATG
* **
25486471 GTCTGGGCCCGAGCCCTATTCAATATCAGTACA
1 GTCTGGGCCCGACCCCTACACAATATCAGTACA
** *
25486504 GTCTGGGCCTTACCCCTACACAGTATCAGTACA
1 GTCTGGGCCCGACCCCTACACAATATCAGTACA
25486537 GTCTGG
1 GTCTGG
25486543 ACCTTAGCCC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.25
Consensus pattern (33 bp):
GTCTGGGCCCGACCCCTACACAATATCAGTACA
Found at i:25487012 original size:26 final size:27
Alignment explanation
Indices: 25486971--25487087 Score: 155
Period size: 27 Copynumber: 4.4 Consensus size: 27
25486961 GGGCATAATC
* *
25486971 GTCATTTTACCATACAAGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
*
25486998 GTTA-TTTACCCTACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* ** *
25487024 GTCATTTTACCTTACATTGGCATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
*
25487051 GTCATTTTACCCTATAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
25487078 GTCATTTTAC
1 GTCATTTTAC
25487088 AGATTGGAGG
Statistics
Matches: 76, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
26 23 0.30
27 53 0.70
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:25487051 original size:53 final size:54
Alignment explanation
Indices: 25486971--25487087 Score: 173
Period size: 54 Copynumber: 2.2 Consensus size: 54
25486961 GGGCATAATC
* *
25486971 GTCATTTTACCATACAAGGGTATTACGGTTA-TTTACCCTACAGGGGTATTACG
1 GTCATTTTACCATACAAGGGCATTACGGTCATTTTACCCTACAGGGGTATTACG
* ** *
25487024 GTCATTTTACCTTACATTGGCATTACGGTCATTTTACCCTATAGGGGTATTACG
1 GTCATTTTACCATACAAGGGCATTACGGTCATTTTACCCTACAGGGGTATTACG
25487078 GTCATTTTAC
1 GTCATTTTAC
25487088 AGATTGGAGG
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
53 26 0.46
54 31 0.54
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.38
Consensus pattern (54 bp):
GTCATTTTACCATACAAGGGCATTACGGTCATTTTACCCTACAGGGGTATTACG
Found at i:25487099 original size:27 final size:27
Alignment explanation
Indices: 25486971--25487101 Score: 95
Period size: 27 Copynumber: 4.9 Consensus size: 27
25486961 GGGCATAATC
* * *
25486971 GTCATTTTACCATACAAGGGTATTACG
1 GTCATTTTACCAGATAGGGGTATTACG
* ** *
25486998 GTTA-TTTACCCTACAGGGGTATTACG
1 GTCATTTTACCAGATAGGGGTATTACG
** * ** *
25487024 GTCATTTTACCTTACATTGGCATTACG
1 GTCATTTTACCAGATAGGGGTATTACG
**
25487051 GTCATTTTACCCTATAGGGGTATTACG
1 GTCATTTTACCAGATAGGGGTATTACG
*
25487078 GTCATTTTA-CAGATTGGAGGTATT
1 GTCATTTTACCAGATAGG-GGTATT
25487102 TCGGCAAATC
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
26 28 0.33
27 58 0.67
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCAGATAGGGGTATTACG
Found at i:25490592 original size:47 final size:47
Alignment explanation
Indices: 25490538--25490917 Score: 514
Period size: 47 Copynumber: 8.1 Consensus size: 47
25490528 TTAGGATTTT
** * *
25490538 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
*
25490585 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATG--TATATAT--GTGATAAGGCCGAATGGCCA
** *
25490636 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
25490683 ATGTGATGAATGTGAACATGTGTATGTGTGATAA---CGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * *
25490727 ATGTGATGAATGTGAACATGTGTATGTGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
** *
25490774 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * *
25490821 ATGTGATGAGTGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
25490868 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
25490915 ATG
1 ATG
25490918 CGAAACATGT
Statistics
Matches: 306, Mismatches: 20, Indels: 14
0.90 0.06 0.04
Matches are distributed among these distances:
44 44 0.14
47 214 0.70
49 11 0.04
51 37 0.12
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
Found at i:25490774 original size:138 final size:139
Alignment explanation
Indices: 25490538--25490917 Score: 546
Period size: 138 Copynumber: 2.7 Consensus size: 139
25490528 TTAGGATTTT
** *
25490538 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGTATATATGAGATAA-G-CGAATGGCCAATGTGATGAATGTGAA-C
* *
25490603 TGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
63 ---ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
25490668 AAGGCCGAATGGCCA
125 AAGGCCGAATGGCCA
* * *
25490683 ATGTGATGAATGTGAACATGTGTATGTGTGATAA-CGAATGGCCAATGTGATGAATGTGAACATG
1 ATGTGATGAATGTGAACATGTATATATGAGATAAGCGAATGGCCAATGTGATGAATGTGAACATG
* *
25490747 TGTATGTGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCC
66 TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCC
25490812 GAATGGCCA
131 GAATGGCCA
* *
25490821 ATGTGATGAGTGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGTATATATGAGATAA-G-CGAATGGCCAATGTGATGAATGTGAACA
* * *
25490886 TGTATATATGTGGTAAGGCCGAATGGCTAATG
64 TGTATATGTGTGATAAGGCCGAATGGCCAATG
25490918 CGAAACATGT
Statistics
Matches: 212, Mismatches: 20, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
138 102 0.48
141 56 0.26
142 25 0.12
145 29 0.14
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (139 bp):
ATGTGATGAATGTGAACATGTATATATGAGATAAGCGAATGGCCAATGTGATGAATGTGAACATG
TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCC
GAATGGCCA
Found at i:25490858 original size:185 final size:187
Alignment explanation
Indices: 25490538--25490897 Score: 535
Period size: 185 Copynumber: 1.9 Consensus size: 187
25490528 TTAGGATTTT
**
25490538 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGTATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
* * * *
25490603 TGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
66 --TATACATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGAT
* *
25490668 AAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAACGAATGGCCA
129 AAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATAACGAATGGCCA
* * * * *
25490727 ATGTGATGAATGTGAACATGTGTATGTGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAA-C
1 ATGTGATGAATGTGAACATGTATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
* * * *
25490791 -ATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAGTGTGAACATGCATATATGAGATAA
66 TATACATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAA
25490855 GGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTG
131 GGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTG
25490898 GTAAGGCCGA
Statistics
Matches: 154, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
185 97 0.63
188 1 0.01
189 56 0.36
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (187 bp):
ATGTGATGAATGTGAACATGTATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
TATACATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAA
GGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATAACGAATGGCCA
Found at i:25490957 original size:46 final size:46
Alignment explanation
Indices: 25490891--25490981 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
25490881 GAACATGTAT
* * *
25490891 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACATGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGAGAAACATGTATGAGATGG
* *
25490937 ATATGTGGTAAAGCCAAATGGCTAATGAGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGAGAAACATGTATGAGATG
25490982 TGTATATATA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.35, C:0.09, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGAGAAACATGTATGAGATGG
Found at i:25493516 original size:20 final size:21
Alignment explanation
Indices: 25493481--25493537 Score: 68
Period size: 20 Copynumber: 2.9 Consensus size: 21
25493471 TGATATGTGG
25493481 GATATGATAT--ACATGAT-T
1 GATATGATATGCACATGATAT
25493499 GATATGATATGCACATGATAT
1 GATATGATATGCACATGATAT
* *
25493520 G-TATGAAACGCACATGAT
1 GATATGATATGCACATGAT
25493538 GTAATCATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 10 0.29
20 22 0.65
21 2 0.06
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.32
Consensus pattern (21 bp):
GATATGATATGCACATGATAT
Found at i:25493617 original size:26 final size:26
Alignment explanation
Indices: 25493587--25493710 Score: 164
Period size: 26 Copynumber: 4.8 Consensus size: 26
25493577 GAGGAAGTGC
25493587 AAAAGGGCTTATAGCCC-AGTTTATTG
1 AAAAGGGCTTAT-GCCCGAGTTTATTG
*
25493613 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCGAGTTTATTG
25493639 AAAAGGGCTTATGCCCGAGTTTATTG
1 AAAAGGGCTTATGCCCGAGTTTATTG
* **
25493665 AAAAGGGCTTATGCCTC-AATTTACCG
1 AAAAGGGCTTATGCC-CGAGTTTATTG
*
25493691 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCGAGTT
25493711 ATTAAAGAGG
Statistics
Matches: 90, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
24 1 0.01
25 11 0.12
26 77 0.86
27 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCGAGTTTATTG
Found at i:25495707 original size:15 final size:15
Alignment explanation
Indices: 25495687--25495724 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
25495677 TAAGGGGAGG
25495687 TATGTTGGAGCTAGT
1 TATGTTGGAGCTAGT
25495702 TATGTTGGAGCTAGT
1 TATGTTGGAGCTAGT
*
25495717 TATCTTGG
1 TATGTTGG
25495725 GAATGGACTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.18, C:0.08, G:0.32, T:0.42
Consensus pattern (15 bp):
TATGTTGGAGCTAGT
Found at i:25500659 original size:20 final size:21
Alignment explanation
Indices: 25500624--25500680 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
25500614 TGATATGTGG
25500624 GATATGATAT--ACATGAT-T
1 GATATGATATGCACATGATAT
25500642 GATATGATATGCACATGATAT
1 GATATGATATGCACATGATAT
*
25500663 G-TATGAAATGCACATGAT
1 GATATGATATGCACATGAT
25500681 GTAATCATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 23 0.66
21 2 0.06
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (21 bp):
GATATGATATGCACATGATAT
Found at i:25500759 original size:26 final size:26
Alignment explanation
Indices: 25500730--25500853 Score: 187
Period size: 26 Copynumber: 4.8 Consensus size: 26
25500720 GAGGAAGTGC
25500730 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
25500756 AAAATGGCTTATGCCTCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
25500782 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
25500808 AAAAGGGCTTATGCCCCAGTTTACAG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
25500834 AAAAGGGCTT-CGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
25500854 ATTAAAGAGG
Statistics
Matches: 89, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
25 9 0.10
26 80 0.90
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:25503736 original size:27 final size:27
Alignment explanation
Indices: 25503696--25503836 Score: 164
Period size: 27 Copynumber: 5.2 Consensus size: 27
25503686 AGGAAGCGTC
25503696 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
*
25503723 CTGGTGGCTCTGCCAC-ATATATCT-AT
1 CTGGTGGCTATGCCACAAT-TATCTGAT
*
25503749 CCTGGTGGCTATGCCACAATTATCTAAT
1 -CTGGTGGCTATGCCACAATTATCTGAT
* *
25503777 CTGGTGGCTTTGCCAC-ATATATCTGTT
1 CTGGTGGCTATGCCACAAT-TATCTGAT
* *
25503804 CTGGTGGCTCTGCCACAA-TATCTATAT
1 CTGGTGGCTATGCCACAATTATCT-GAT
25503831 CTGGTG
1 CTGGTG
25503837 ACTTCGTCAA
Statistics
Matches: 99, Mismatches: 8, Indels: 14
0.82 0.07 0.12
Matches are distributed among these distances:
26 11 0.11
27 83 0.84
28 5 0.05
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGAT
Found at i:25503779 original size:54 final size:54
Alignment explanation
Indices: 25503694--25503836 Score: 225
Period size: 54 Copynumber: 2.6 Consensus size: 54
25503684 GGAGGAAGCG
*
25503694 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTA
1 TCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTA
* *
25503748 TCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTTTGCCACATATATCTG
1 TCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTA
* *
25503802 TTCTGGTGGCTCTGCCACAA-TATCTATATCTGGTG
1 TCCTGGTGGCTATGCCACAATTATCTA-ATCTGGTG
25503837 ACTTCGTCAA
Statistics
Matches: 83, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 6 0.07
54 77 0.93
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (54 bp):
TCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTA
Found at i:25514241 original size:7 final size:8
Alignment explanation
Indices: 25514221--25514247 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
25514211 CTTTTAAGTC
25514221 CAAAAATT
1 CAAAAATT
25514229 CAAAAATT
1 CAAAAATT
25514237 CAAAAATT
1 CAAAAATT
25514245 CAA
1 CAA
25514248 CTGGGTTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.63, C:0.15, G:0.00, T:0.22
Consensus pattern (8 bp):
CAAAAATT
Found at i:25518263 original size:39 final size:39
Alignment explanation
Indices: 25518202--25518340 Score: 233
Period size: 39 Copynumber: 3.6 Consensus size: 39
25518192 GAATTTAAGC
* *
25518202 CCGGATATAATTCCAGCTCATAGCCTGCGGATCTGAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
* *
25518241 CCGAATATAATTCCAGCACATAGCCTGTGGACCTGAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
25518280 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
*
25518319 CCGGATATAATTCTAGCACATA
1 CCGGATATAATTCCAGCACATA
25518341 CAATTATGAT
Statistics
Matches: 93, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 93 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
Found at i:25522052 original size:50 final size:50
Alignment explanation
Indices: 25521913--25522206 Score: 268
Period size: 50 Copynumber: 5.8 Consensus size: 50
25521903 AACTAAAGTT
** * *
25521913 ATCTGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AACA
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
* * * * * *
25521962 ATTTGGTATACGTAATAGCCTGCACTTAGTACTAAACACGTGACCTAACC
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
* * * * **
25522012 ATCTGATACACATAGTAGCCTGCACTTAGTACTGCACACGTGA-TTGAAGTT
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA-CC
* * *** * * * *
25522063 GTCAGGTATGTATAGTAGCCTACACTTAGTACTACATATGAGACCTAACT
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
*
25522113 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAAAACC
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT--AACC
*** *
25522165 ATCTTCAACACATAGTAGCCTGCACATAGTACTACACATGTG
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTG
25522207 TTCTCACAGT
Statistics
Matches: 193, Mismatches: 46, Indels: 9
0.78 0.19 0.04
Matches are distributed among these distances:
49 39 0.20
50 79 0.41
51 34 0.18
52 41 0.21
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.27
Consensus pattern (50 bp):
ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
Found at i:25522360 original size:13 final size:14
Alignment explanation
Indices: 25522342--25522375 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
25522332 GCCACATCTC
25522342 ATATAATAACA-AA
1 ATATAATAACATAA
25522355 ATATAATAACATAA
1 ATATAATAACATAA
*
25522369 AAATAAT
1 ATATAAT
25522376 CAATATATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (14 bp):
ATATAATAACATAA
Found at i:25528229 original size:20 final size:21
Alignment explanation
Indices: 25528194--25528250 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
25528184 TGATATGTGG
25528194 GATATGATAT--ACATGAT-T
1 GATATGATATGCACATGATAT
25528212 GATATGATATGCACATGATAT
1 GATATGATATGCACATGATAT
*
25528233 G-TATGAAATGCACATGAT
1 GATATGATATGCACATGAT
25528251 GTAATCATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 23 0.66
21 2 0.06
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (21 bp):
GATATGATATGCACATGATAT
Found at i:25528374 original size:25 final size:26
Alignment explanation
Indices: 25528300--25528396 Score: 153
Period size: 26 Copynumber: 3.8 Consensus size: 26
25528290 GAGGAAGTGC
*
25528300 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
25528326 AATAGGGCTTATGCCCCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
25528352 AAAAGGGCTTATG-CCCAATTTACTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
25528377 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
25528397 ATTAAAGAGG
Statistics
Matches: 65, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
24 2 0.03
25 27 0.42
26 36 0.55
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACTG
Found at i:25531417 original size:30 final size:31
Alignment explanation
Indices: 25531381--25531458 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
25531371 TTTAACGATT
25531381 ACTGGGCCGAAGCCTTTTCAT-AATCAAATC
1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC
*
25531411 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC
* *
25531442 CCTGGGCTGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
25531459 ATTGCAAACG
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
30 21 0.48
31 23 0.52
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCAAATC
Found at i:25531542 original size:42 final size:42
Alignment explanation
Indices: 25531482--25531573 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
25531472 TGGCCCACAC
*
25531482 GCCCATTTCAATAACACATGAAATATCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
*
25531524 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
25531566 GCCCATTT
1 GCCCATTT
25531574 GGGGAGACAA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (42 bp):
GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
Found at i:25531753 original size:25 final size:25
Alignment explanation
Indices: 25531721--25531815 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
25531711 CTCTTTTAAT
* * *
25531721 AACTGGGGCAAAACCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
25531746 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
25531771 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
**
25531796 AACTGGGGCGTAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
25531816 AGCACTTCCT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:25532646 original size:25 final size:28
Alignment explanation
Indices: 25532609--25532669 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 28
25532599 TCATATGGAA
*
25532609 CATA-AGGGCATATT-C-GTCATTTTAC
1 CATACAGGGCATATTACGGTCACTTTAC
25532634 CATACAGGG-ATATTACGGTCACTTTAC
1 CATACAGGGCATATTACGGTCACTTTAC
*
25532661 CCTACAGGG
1 CATACAGGG
25532670 GCTTTACAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 9 0.29
26 5 0.16
27 17 0.55
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (28 bp):
CATACAGGGCATATTACGGTCACTTTAC
Found at i:25532780 original size:54 final size:54
Alignment explanation
Indices: 25532696--25532852 Score: 156
Period size: 54 Copynumber: 2.9 Consensus size: 54
25532686 ACCTATTAGG
* ** * * *
25532696 GGTATTTTAGTCATTTCATCCTA-CAAGGGTATTTTGGTAAATCTACAAATCAAA
1 GGTATTTTAGTAATTTCA-CAAACCAGGGGTATTTTGGTAATTTTACAAATCAAA
*** * ** *
25532750 GGTATTTCT-GTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTT-TAGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAATCAAA
*
25532804 GGTATTTTAGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAA
1 GGTATTTTAGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAA
25532853 CTAGGGGTGT
Statistics
Matches: 83, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
53 2 0.02
54 80 0.96
55 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (54 bp):
GGTATTTTAGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAATCAAA
Found at i:25532809 original size:81 final size:81
Alignment explanation
Indices: 25532721--25532872 Score: 184
Period size: 81 Copynumber: 1.9 Consensus size: 81
25532711 TCATCCTACA
* * **
25532721 AGGGTATTTTGGTAAATCT-ACAAATCAAAGGTATTTCT-GTAATTTTGTAAA-TCAGGGGTATT
1 AGGGTATTTTAGT-AATCTCACAAACCAAAGGTATTT-TGGTAATTTTACAAACT-AGGGGTATT
25532783 TTGGTAATTTTACAAATTG
63 TTGGTAATTTTACAAATTG
* ** *
25532802 AGGGTATTTTAGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAACTAGGGGTGTTTTG
1 AGGGTATTTTAGTAATCTCACAAACCAAAGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
25532867 GTAATT
66 GTAATT
25532873 CTATCCCTAT
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
80 5 0.08
81 54 0.90
82 1 0.02
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (81 bp):
AGGGTATTTTAGTAATCTCACAAACCAAAGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
GTAATTTTACAAATTG
Found at i:25532851 original size:27 final size:27
Alignment explanation
Indices: 25532722--25532872 Score: 146
Period size: 27 Copynumber: 5.6 Consensus size: 27
25532712 CATCCTACAA
* * *
25532722 GGGTATTTTGGTAAATCTACAAATCAA
1 GGGTATTTTGGTAATTTTACAAATCAG
* **
25532749 AGGTATTTCT-GTAATTTTGTAAATCAG
1 GGGTATTT-TGGTAATTTTACAAATCAG
*
25532776 GGGTATTTTGGTAATTTTACAAAT-TG
1 GGGTATTTTGGTAATTTTACAAATCAG
* * *
25532802 AGGGTATTTTAGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAATCAG
*
25532830 TGGTATTTTGGTAATTTTACAAA-CTAG
1 GGGTATTTTGGTAATTTTACAAATC-AG
*
25532857 GGGTGTTTTGGTAATT
1 GGGTATTTTGGTAATT
25532873 CTATCCCTAT
Statistics
Matches: 100, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
26 3 0.03
27 95 0.95
28 2 0.02
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCAG
Found at i:25532943 original size:27 final size:27
Alignment explanation
Indices: 25532909--25532996 Score: 131
Period size: 27 Copynumber: 3.3 Consensus size: 27
25532899 TTTCACAATT
**
25532909 GAGGGTAAAATGGTAATTTTGTAAATC
1 GAGGGTAAAACAGTAATTTTGTAAATC
*
25532936 AAGGGTAAAACAGTAATTTTGTAAATC
1 GAGGGTAAAACAGTAATTTTGTAAATC
* *
25532963 GAGGGTAAAACAGTAATTCTATAAATC
1 GAGGGTAAAACAGTAATTTTGTAAATC
25532990 GAGGGTA
1 GAGGGTA
25532997 CTTTGGTAAT
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.41, C:0.07, G:0.24, T:0.28
Consensus pattern (27 bp):
GAGGGTAAAACAGTAATTTTGTAAATC
Found at i:25533033 original size:28 final size:27
Alignment explanation
Indices: 25532946--25533036 Score: 80
Period size: 27 Copynumber: 3.3 Consensus size: 27
25532936 AAGGGTAAAA
***
25532946 CAGTAATTTTGTA-AATCGAGGGTAAAA
1 CAGTAATTTT-TATAATCGAGGGTATTT
*
25532973 CAGTAA-TTCTATAAATCGAGGGTACTTT
1 CAGTAATTTTTAT-AATCGAGGGTA-TTT
*
25533001 -GGTAATTTTTATAAGTCGAGGGTATTT
1 CAGTAATTTTTATAA-TCGAGGGTATTT
25533028 CAGTAATTT
1 CAGTAATTT
25533037 GGTAAACTAA
Statistics
Matches: 51, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
25 2 0.04
26 2 0.04
27 26 0.51
28 21 0.41
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (27 bp):
CAGTAATTTTTATAATCGAGGGTATTT
Found at i:25538149 original size:20 final size:20
Alignment explanation
Indices: 25538113--25538151 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
25538103 GCATGACGGT
*
25538113 AAGTTGGGCCTCGTGGGCTG
1 AAGTTGGGCCTCATGGGCTG
25538133 AAGTTGGGCC-CAATGGGCT
1 AAGTTGGGCCTC-ATGGGCT
25538152 TTCGGGCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.15, C:0.21, G:0.41, T:0.23
Consensus pattern (20 bp):
AAGTTGGGCCTCATGGGCTG
Found at i:25538529 original size:20 final size:21
Alignment explanation
Indices: 25538494--25538550 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
25538484 TGATATGTGG
25538494 GATATGATAT--ACATGAT-T
1 GATATGATATGCACATGATAT
25538512 GATATGATATGCACATGATAT
1 GATATGATATGCACATGATAT
*
25538533 G-TATGAAATGCACATGAT
1 GATATGATATGCACATGAT
25538551 GTAATGATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 23 0.66
21 2 0.06
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (21 bp):
GATATGATATGCACATGATAT
Found at i:25538723 original size:25 final size:26
Alignment explanation
Indices: 25538600--25538723 Score: 178
Period size: 26 Copynumber: 4.8 Consensus size: 26
25538590 GAGGAAGTGC
** *
25538600 AAAAGGGCTTATGCCGTAGTTTATTA
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
25538626 AAAAGGGCTTGTGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
25538652 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
25538678 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
25538704 AAAAGGG-TTTTGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
25538724 ATTAAAGAGG
Statistics
Matches: 90, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
25 12 0.13
26 78 0.87
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:25548233 original size:12 final size:12
Alignment explanation
Indices: 25548216--25548241 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
25548206 TAGACCCTAT
25548216 TTAGAATGGTAG
1 TTAGAATGGTAG
25548228 TTAGAATGGTAG
1 TTAGAATGGTAG
25548240 TT
1 TT
25548242 TTGAGACCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.31, T:0.38
Consensus pattern (12 bp):
TTAGAATGGTAG
Found at i:25555045 original size:49 final size:51
Alignment explanation
Indices: 25554886--25555063 Score: 168
Period size: 50 Copynumber: 3.5 Consensus size: 51
25554876 CTGGTACGCA
* * * ** * *
25554886 TAGTATCCTGCACTTAGTACTACACACGTGA-CCTAA-CCATCTGATACACG
1 TAGTAGCCTACACTTAGTACTACACACGCGATCC-AAGTTATCAGGTACACG
* * * * * *
25554936 TAATAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCA
1 TAGTAGCCTACACTTAGTACTACACACGCGATCCAAGTTATCAGGTACACG
* *
25554987 TAGTAGCCTACACTTAGAACTACACATGCGA-CCAA-TTATCCA-GTACACG
1 TAGTAGCCTACACTTAGTACTACACACGCGATCCAAGTTAT-CAGGTACACG
25555036 TAGTAGCCTACACTTAGTACTACACACG
1 TAGTAGCCTACACTTAGTACTACACACG
25555064 TGACCTCACA
Statistics
Matches: 106, Mismatches: 19, Indels: 7
0.80 0.14 0.05
Matches are distributed among these distances:
49 35 0.33
50 36 0.34
51 35 0.33
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.25
Consensus pattern (51 bp):
TAGTAGCCTACACTTAGTACTACACACGCGATCCAAGTTATCAGGTACACG
Found at i:25555059 original size:100 final size:101
Alignment explanation
Indices: 25554873--25555066 Score: 266
Period size: 101 Copynumber: 1.9 Consensus size: 101
25554863 TAGACAAGGC
* * * * * *
25554873 TATCTGGTACGCATAGTATCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTA
1 TATCAGGTACGCATAGTAGCCTACACTTAGAACTACACACGCGACCTAACCATCAGATACACGTA
*
25554938 ATAGCCTGCACTTAGTACTACACACGTGATCGAAGT
66 ATAGCCTACACTTAGTACTACACACGTGATCGAAGT
* **
25554974 TATCAGGTACGCATAGTAGCCTACACTTAGAACTACACATGCGACC-AATTATCCAG-TACACGT
1 TATCAGGTACGCATAGTAGCCTACACTTAGAACTACACACGCGACCTAACCAT-CAGATACACGT
*
25555037 AGTAGCCTACACTTAGTACTACACACGTGA
65 AATAGCCTACACTTAGTACTACACACGTGA
25555067 CCTCACAATA
Statistics
Matches: 81, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
100 39 0.48
101 42 0.52
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (101 bp):
TATCAGGTACGCATAGTAGCCTACACTTAGAACTACACACGCGACCTAACCATCAGATACACGTA
ATAGCCTACACTTAGTACTACACACGTGATCGAAGT
Found at i:25557428 original size:49 final size:48
Alignment explanation
Indices: 25557227--25557494 Score: 196
Period size: 49 Copynumber: 5.6 Consensus size: 48
25557217 TGTGTAAGCT
** * **
25557227 AGTGTAAGA-CATGTCTGGGACATGCATTTGCC-ACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCGATAAGATGAGAGCC
* * * * *
25557273 AGTGTAAGACCATGTCTAGGACATGGCATTGG--GATTGAA-ACGAGTGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCGA-T-AAGATGAGAGCC
* * * *
25557321 AGTATAAGA-CATGTCTGGGACATGCATCGG-C--TACGA-GATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCGATAAGATGA-GAGCC
* * * * *
25557365 AGTGTAAGACCATGTTTGGGACATGTATCGGCACGATTATATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGCATCGGC-CGATAAGATGAGAGCC
** *
25557414 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCTAAGATGATAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCGATAAGATGAGAGCC
*
25557463 AGTGTAAGACCATGTCTGGGGCATGGCATCGG
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGG
25557495 GACTTTACCC
Statistics
Matches: 176, Mismatches: 31, Indels: 27
0.75 0.13 0.12
Matches are distributed among these distances:
43 3 0.02
44 13 0.07
45 19 0.11
46 15 0.09
47 28 0.16
48 20 0.11
49 69 0.39
50 9 0.05
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCCGATAAGATGAGAGCC
Found at i:25574297 original size:27 final size:26
Alignment explanation
Indices: 25574245--25574321 Score: 75
Period size: 27 Copynumber: 2.9 Consensus size: 26
25574235 ATATGAAAAA
* * *
25574245 AATATATATTATTATATACATCTTTAT
1 AATATATATTA-TATTTATATTTTTAT
*
25574272 AA-ATTTTATTATATGTTATATTTTTAT
1 AATA-TATATTATAT-TTATATTTTTAT
*
25574299 TATATATATTATATTTATATTTT
1 AATATATATTATATTTATATTTT
25574322 ATTATTTGTT
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
26 13 0.32
27 27 0.66
28 1 0.02
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (26 bp):
AATATATATTATATTTATATTTTTAT
Found at i:25574310 original size:20 final size:20
Alignment explanation
Indices: 25574281--25574319 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
25574271 TAAATTTTAT
* *
25574281 TATATGTTATATTTTTATTA
1 TATATATTATATTTATATTA
25574301 TATATATTATATTTATATT
1 TATATATTATATTTATATT
25574320 TTATTATTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (20 bp):
TATATATTATATTTATATTA
Found at i:25574332 original size:43 final size:45
Alignment explanation
Indices: 25574274--25574361 Score: 128
Period size: 43 Copynumber: 2.0 Consensus size: 45
25574264 ATCTTTATAA
25574274 ATTTTATTATATGTTATAT-TTTTATTA-TATATAT-TATATTTAT
1 ATTTTATTATATGTTATATATTTTATTACTATATATAT-TATTTAT
* *
25574317 ATTTTATTATTTGTTATATATTTTTTTACTATATATATTATTTAT
1 ATTTTATTATATGTTATATATTTTATTACTATATATATTATTTAT
25574362 TTTACTATAT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
43 18 0.45
44 7 0.17
45 14 0.35
46 1 0.03
ACGTcount: A:0.31, C:0.01, G:0.02, T:0.66
Consensus pattern (45 bp):
ATTTTATTATATGTTATATATTTTATTACTATATATATTATTTAT
Found at i:25574336 original size:19 final size:19
Alignment explanation
Indices: 25574268--25574485 Score: 68
Period size: 19 Copynumber: 10.6 Consensus size: 19
25574258 ATATACATCT
* *
25574268 TTATAAATTTTATTATATG
1 TTATATATTTTATTATTTG
*
25574287 TTATAT-TTTTATTATATATAT
1 TTATATATTTTATTAT-T-T-G
25574308 TATATTTATATTTTATTATTTG
1 T-TA--TATATTTTATTATTTG
* *
25574330 TTATATATTTTTTTACTATATATA
1 TTATATA---TTTTA-T-TATTTG
*
25574354 TTATTTATTTTACTATATTT-
1 TTATATATTTTA-T-TATTTG
* *** *
25574374 TTATATGTAAAATTACTTG
1 TTATATATTTTATTATTTG
25574393 TTATATCATTTTTATTA-TT-
1 TTATAT-A-TTTTATTATTTG
*
25574412 TTATATATTACTTATCATATTG
1 TTATATATT--TTATTAT-TTG
*
25574434 TTCATAT-TATTATATATTTTG
1 TT-ATATATTTTAT-TA-TTTG
* *
25574455 TTTATAAATTTTATTATATG
1 -TTATATATTTTATTATTTG
25574475 TTATATATTTT
1 TTATATATTTT
25574486 TCCACCTATT
Statistics
Matches: 149, Mismatches: 25, Indels: 50
0.67 0.11 0.22
Matches are distributed among these distances:
17 2 0.01
18 14 0.09
19 37 0.25
20 17 0.11
21 31 0.21
22 19 0.13
23 6 0.04
24 14 0.09
25 9 0.06
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.62
Consensus pattern (19 bp):
TTATATATTTTATTATTTG
Found at i:25574373 original size:45 final size:44
Alignment explanation
Indices: 25574274--25574379 Score: 114
Period size: 45 Copynumber: 2.4 Consensus size: 44
25574264 ATCTTTATAA
* *
25574274 ATTTTATTATATGT-TATATTTTTATTATATATATTATATTTAT
1 ATTTTATTATTTTTATATATTTTTATTATATATATTATATTTAT
25574317 ATTTTATTATTTGTTATATATTTTT-TTACTATATA-TAT-TATT-T
1 ATTTTATTATTT-TTATATATTTTTATTA-TATATATTATAT-TTAT
25574360 ATTTTACTATATTTTTATAT
1 ATTTTA-T-TATTTTTATAT
25574380 GTAAAATTAC
Statistics
Matches: 55, Mismatches: 2, Indels: 11
0.81 0.03 0.16
Matches are distributed among these distances:
43 19 0.35
44 16 0.29
45 20 0.36
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (44 bp):
ATTTTATTATTTTTATATATTTTTATTATATATATTATATTTAT
Found at i:25574737 original size:11 final size:12
Alignment explanation
Indices: 25574721--25574754 Score: 54
Period size: 11 Copynumber: 3.0 Consensus size: 12
25574711 TCTAAACATC
25574721 TTTATTTT-TAT
1 TTTATTTTATAT
25574732 TTTATTTTAT-T
1 TTTATTTTATAT
25574743 TTTATTTTATAT
1 TTTATTTTATAT
25574755 GATTATAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 19 0.90
12 2 0.10
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTATTTTATAT
Found at i:25574740 original size:16 final size:16
Alignment explanation
Indices: 25574721--25574752 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
25574711 TCTAAACATC
25574721 TTTATTTTTATTTTAT
1 TTTATTTTTATTTTAT
25574737 TTTATTTTTATTTTAT
1 TTTATTTTTATTTTAT
25574753 ATGATTATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTATTTTTATTTTAT
Found at i:25581712 original size:26 final size:27
Alignment explanation
Indices: 25581683--25581737 Score: 74
Period size: 29 Copynumber: 2.0 Consensus size: 27
25581673 TTTACCAAGC
*
25581683 TTATTGTTACTGGCAGCTATGCTGCGT
1 TTATTATTACTGGCAGCTATGCTGCGT
*
25581710 TATCATTATTACTGGCAGCTTTGCTGCG
1 T-T-ATTATTACTGGCAGCTATGCTGCG
25581738 ATATTAATGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 1 0.04
28 1 0.04
29 22 0.92
ACGTcount: A:0.16, C:0.20, G:0.24, T:0.40
Consensus pattern (27 bp):
TTATTATTACTGGCAGCTATGCTGCGT
Done.