Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 82 of 250
Found at i:25974685 original size:12 final size:12
Alignment explanation
Indices: 25974668--25974693 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
25974658 ACAGGTTTGG
25974668 CATGGCCTAGCA
1 CATGGCCTAGCA
25974680 CATGGCCTAGCA
1 CATGGCCTAGCA
25974692 CA
1 CA
25974694 CGAGCGTGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.35, G:0.23, T:0.15
Consensus pattern (12 bp):
CATGGCCTAGCA
Found at i:25980867 original size:29 final size:29
Alignment explanation
Indices: 25980821--25980905 Score: 91
Period size: 29 Copynumber: 2.9 Consensus size: 29
25980811 CATTATGCCC
* * *
25980821 AATCATATTCATACAGCCCATTAGGCCGA
1 AATCACATTTATATAGCCCATTAGGCCGA
* *
25980850 AATCAC-TTGTATATAGCCCACTAGGCCTA
1 AATCACATT-TATATAGCCCATTAGGCCGA
* *
25980879 AATCACATTTATATGGCCCGTTAGGCC
1 AATCACATTTATATAGCCCATTAGGCC
25980906 CAGTCACATT
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
28 2 0.04
29 42 0.91
30 2 0.04
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
AATCACATTTATATAGCCCATTAGGCCGA
Found at i:25981173 original size:8 final size:8
Alignment explanation
Indices: 25981138--25981173 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
25981128 ACTTTCGACT
25981138 TTTCGGCA
1 TTTCGGCA
*
25981146 TTTTGGCA
1 TTTCGGCA
*
25981154 TTTTGGCA
1 TTTCGGCA
25981162 TTTCGGCA
1 TTTCGGCA
25981170 TTTC
1 TTTC
25981174 AGCAATTCTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.11, C:0.19, G:0.22, T:0.47
Consensus pattern (8 bp):
TTTCGGCA
Found at i:25984858 original size:45 final size:45
Alignment explanation
Indices: 25984808--25984911 Score: 156
Period size: 45 Copynumber: 2.3 Consensus size: 45
25984798 GTAGCAGTAG
* *
25984808 CAGTAACAGTAACAGTATTCAACACACAAAGT-GCTGAATCTGTAA
1 CAGTAACAGTAACAGTATTCAACACACAAAGTATC-GAATCGGTAA
* *
25984853 CAGTAACGGTAACAGTATTCGACACACAAAGTATCGAATCGGTAA
1 CAGTAACAGTAACAGTATTCAACACACAAAGTATCGAATCGGTAA
25984898 CAGTAACAGTAACA
1 CAGTAACAGTAACA
25984912 ATAACAGTAG
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
45 52 0.98
46 1 0.02
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.20
Consensus pattern (45 bp):
CAGTAACAGTAACAGTATTCAACACACAAAGTATCGAATCGGTAA
Found at i:25984904 original size:51 final size:50
Alignment explanation
Indices: 25984796--25984920 Score: 136
Period size: 45 Copynumber: 2.6 Consensus size: 50
25984786 TAATCAGTTA
*
25984796 CGGTAGCAGTAGCAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAAT
1 CGGTA-CAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAAT
* * *
25984847 C--T---GTAACAGTAACGGTAACAGTATTCGACACACAAAGT-ATCGAAT
1 CGGTACAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCT-GAAT
*
25984892 CGGTAACAGTAACAGTAACAATAACAGTA
1 CGGT-ACAGTAACAGTAACAGTAACAGTA
25984921 GTCGGCATAT
Statistics
Matches: 61, Mismatches: 6, Indels: 14
0.75 0.07 0.17
Matches are distributed among these distances:
44 1 0.02
45 38 0.62
47 1 0.02
49 1 0.02
51 20 0.33
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.20
Consensus pattern (50 bp):
CGGTACAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAAT
Found at i:25985203 original size:40 final size:40
Alignment explanation
Indices: 25985127--25985204 Score: 93
Period size: 40 Copynumber: 1.9 Consensus size: 40
25985117 CTTCATTAGA
* ** *
25985127 AATTTTACAGTTCAATGCAGTATACGTAACATTATTCAGT
1 AATTTCACAGTTCAATGCAGTATACAAAACAATATTCAGT
* * *
25985167 AATTTCACAGTTCAATTCGGTATTCAAAACAATATTCA
1 AATTTCACAGTTCAATGCAGTATACAAAACAATATTCA
25985205 ATATCCCATG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.36
Consensus pattern (40 bp):
AATTTCACAGTTCAATGCAGTATACAAAACAATATTCAGT
Found at i:25985994 original size:13 final size:14
Alignment explanation
Indices: 25985978--25986024 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 14
25985968 CTTTACTTTG
25985978 TTTTATTTC-TTTA
1 TTTTATTTCATTTA
* *
25985991 TTTTATTTCATCTC
1 TTTTATTTCATTTA
*
25986005 TTTTA-TTCTTTTA
1 TTTTATTTCATTTA
25986018 TTTTATT
1 TTTTATT
25986025 AACTTTATAA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
13 19 0.70
14 8 0.30
ACGTcount: A:0.15, C:0.11, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTTATTTCATTTA
Found at i:25992470 original size:6 final size:6
Alignment explanation
Indices: 25992440--25992481 Score: 57
Period size: 6 Copynumber: 6.8 Consensus size: 6
25992430 AGTACCTAAT
* *
25992440 CAGTAA TCAGTAA CGGTAG CAGTAA CAGTAA CAGTAA CAGTA
1 CAGTAA -CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTA
25992482 TTCAACACAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
6 25 0.81
7 6 0.19
ACGTcount: A:0.43, C:0.17, G:0.21, T:0.19
Consensus pattern (6 bp):
CAGTAA
Found at i:25992527 original size:45 final size:45
Alignment explanation
Indices: 25992461--25992560 Score: 132
Period size: 45 Copynumber: 2.2 Consensus size: 45
25992451 AACGGTAGCA
* * *
25992461 GTAACAGTAACAGTAACAGTATTCAACACACAAAGT-GCTAAATCT
1 GTAACAGTAACAGTAAAAGTATTCAACACACAAAGTATC-AAATCG
*
25992506 GTAACAGTAAC-GATAAAAGTATTCGACACACAAAGTATCAAATCG
1 GTAACAGTAACAG-TAAAAGTATTCAACACACAAAGTATCAAATCG
25992551 GTAACAGTAA
1 GTAACAGTAA
25992561 TGGTAATAGT
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
44 1 0.02
45 47 0.96
46 1 0.02
ACGTcount: A:0.46, C:0.18, G:0.15, T:0.21
Consensus pattern (45 bp):
GTAACAGTAACAGTAAAAGTATTCAACACACAAAGTATCAAATCG
Found at i:25993648 original size:13 final size:13
Alignment explanation
Indices: 25993630--25993672 Score: 61
Period size: 13 Copynumber: 3.3 Consensus size: 13
25993620 TTCTTCTTTA
25993630 CTTTGTTTTATTT
1 CTTTGTTTTATTT
25993643 CTTTGTTTTATTT
1 CTTTGTTTTATTT
*
25993656 CATTTCTTTTA-TT
1 C-TTTGTTTTATTT
25993669 CTTT
1 CTTT
25993673 TATTTTATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
12 3 0.11
13 17 0.61
14 8 0.29
ACGTcount: A:0.09, C:0.12, G:0.05, T:0.74
Consensus pattern (13 bp):
CTTTGTTTTATTT
Found at i:25993696 original size:3 final size:3
Alignment explanation
Indices: 25993688--25993733 Score: 83
Period size: 3 Copynumber: 15.3 Consensus size: 3
25993678 TATTAACTTT
*
25993688 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATT ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
25993734 ATATCTTATT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:25993999 original size:20 final size:20
Alignment explanation
Indices: 25993976--25994032 Score: 80
Period size: 20 Copynumber: 2.8 Consensus size: 20
25993966 TTAATTTACT
25993976 TTTAATAATAATAATCATAA
1 TTTAATAATAATAATCATAA
25993996 TTTAATAAT-ATAAATCATAA
1 TTTAATAATAAT-AATCATAA
25994016 TTTAATAGAATAATAAT
1 TTTAAT--AATAATAAT
25994033 AAATAATATA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
19 2 0.06
20 23 0.70
22 6 0.18
23 2 0.06
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (20 bp):
TTTAATAATAATAATCATAA
Found at i:25994038 original size:23 final size:21
Alignment explanation
Indices: 25993976--25994039 Score: 62
Period size: 20 Copynumber: 3.0 Consensus size: 21
25993966 TTAATTTACT
*
25993976 TTTAATAATAATAAT-CATAA
1 TTTAATAATAATAATAAATAA
*
25993996 TTTAATAAT-ATAA-ATCATAA
1 TTTAATAATAATAATA-AATAA
25994016 TTTAATAGAATAATAATAAATAA
1 TTTAAT--AATAATAATAAATAA
25994039 T
1 T
25994040 ATATATCTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
19 4 0.11
20 20 0.54
22 3 0.08
23 9 0.24
24 1 0.03
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.39
Consensus pattern (21 bp):
TTTAATAATAATAATAAATAA
Found at i:25995619 original size:28 final size:29
Alignment explanation
Indices: 25995587--25995701 Score: 146
Period size: 29 Copynumber: 4.0 Consensus size: 29
25995577 TACATGTATC
* *
25995587 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
25995615 TGGCCCATTAGGCCCAAATCACCTAT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
*
25995644 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
25995673 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
25995701 T
1 T
25995702 TCATGCTCAC
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
28 27 0.35
29 49 0.64
30 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:25995782 original size:17 final size:18
Alignment explanation
Indices: 25995760--25995793 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
25995750 TGCCTATTAT
25995760 GGGCCCA-ATAGCCCATC
1 GGGCCCATATAGCCCATC
*
25995777 GGGCCCATTTAGCCCAT
1 GGGCCCATATAGCCCAT
25995794 TCTAGCCCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.38, G:0.24, T:0.18
Consensus pattern (18 bp):
GGGCCCATATAGCCCATC
Found at i:25996873 original size:16 final size:16
Alignment explanation
Indices: 25996848--25996879 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
25996838 AAATTCAAGA
*
25996848 TTTTGGGATTTTTGGG
1 TTTTGAGATTTTTGGG
25996864 TTTTGAGATTTTTGGG
1 TTTTGAGATTTTTGGG
25996880 GCGTTACAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.00, G:0.34, T:0.56
Consensus pattern (16 bp):
TTTTGAGATTTTTGGG
Found at i:26008543 original size:16 final size:16
Alignment explanation
Indices: 26008524--26008554 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26008514 CTTCTTCACT
26008524 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
26008540 TACTTACTTACTTAA
1 TACTCACTTACTTAA
26008555 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:26008560 original size:20 final size:20
Alignment explanation
Indices: 26008521--26008560 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
26008511 TCACTTCTTC
* *
26008521 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
26008541 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
26008561 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:26008931 original size:55 final size:53
Alignment explanation
Indices: 26008804--26008945 Score: 153
Period size: 53 Copynumber: 2.6 Consensus size: 53
26008794 AACTGACCAT
* *
26008804 TGCCATGTCTCGACATGGTCTTACATGGTATCCTAGCCTTATAAACTCACTAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATCCTAGCCTTATAAACTCACTAA
** * * * *
26008857 TGCCATACCTTGGCATGGTCTTGCATGGGA-CCTTTGCCTTATAGTAACTTA-TCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATCC-TAGCCTTATA--AACTCACT-AA
*
26008912 TGCCATGTCTTGACATGGTCTTACATGGTATCCT
1 TGCCATGTCTTGACATGGTCTTACATGGGATCCT
26008946 TCACTTAGAA
Statistics
Matches: 71, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
52 2 0.03
53 33 0.46
54 1 0.01
55 33 0.46
56 2 0.03
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.35
Consensus pattern (53 bp):
TGCCATGTCTTGACATGGTCTTACATGGGATCCTAGCCTTATAAACTCACTAA
Found at i:26011078 original size:18 final size:18
Alignment explanation
Indices: 26011055--26011090 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
26011045 CAAAGCTTCC
*
26011055 TGTAACTTCTTCCAAAAT
1 TGTAACTTCTTCAAAAAT
26011073 TGTAACTTCTTCAAAAAT
1 TGTAACTTCTTCAAAAAT
26011091 CGTGAAGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.19, G:0.06, T:0.39
Consensus pattern (18 bp):
TGTAACTTCTTCAAAAAT
Found at i:26016650 original size:55 final size:54
Alignment explanation
Indices: 26016525--26016720 Score: 227
Period size: 55 Copynumber: 3.6 Consensus size: 54
26016515 CTTACCATTA
* * * *
26016525 CCATGTCTTGACATGGTTTTACATGGTATCCTTGCCTTAT-GAACTCACCAATG
1 CCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATG
* *
26016578 CCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAATG
1 CCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAG-AACTTATCAATG
* * *
26016633 CCATGTCTTGACATGGTCTTGCATGGTATCCTTGCCTTAGA-AACCTTATCAATCG
1 CCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA-CTTATCAAT-G
* * *
26016688 CGATGCCTTGGCATGGTCTTACGTGGTATCCTT
1 CCATGCCTTGACATGGTCTTACATGGTATCCTT
26016721 AAACCCTAAT
Statistics
Matches: 121, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
52 2 0.02
53 35 0.29
54 10 0.08
55 72 0.60
56 2 0.02
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.35
Consensus pattern (54 bp):
CCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATG
Found at i:26020709 original size:43 final size:43
Alignment explanation
Indices: 26020662--26020760 Score: 107
Period size: 43 Copynumber: 2.3 Consensus size: 43
26020652 ATGTGACTCT
26020662 GATATATGTGTACGA-GTAAGACC-CTGTCTGGGACAG-TGGCATC
1 GATATATGTGTAC-ATGTAAGACCAC-GTCTGGGAC-GTTGGCATC
*
26020705 GATATATGAT-TACATGTAAGACCACGTCTGGGACGTTGGCATT
1 GATATATG-TGTACATGTAAGACCACGTCTGGGACGTTGGCATC
26020748 GTATGATATGTGT
1 G-AT-ATATGTGT
26020761 GATTATCTGA
Statistics
Matches: 48, Mismatches: 1, Indels: 12
0.79 0.02 0.20
Matches are distributed among these distances:
42 2 0.04
43 35 0.73
44 5 0.10
45 6 0.12
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (43 bp):
GATATATGTGTACATGTAAGACCACGTCTGGGACGTTGGCATC
Found at i:26025565 original size:25 final size:25
Alignment explanation
Indices: 26025536--26025586 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
26025526 TAATCAATGC
26025536 AAGCTATAAAGATTAATAAGTTTGT
1 AAGCTATAAAGATTAATAAGTTTGT
26025561 AAGCTATAAAGATTAATAAGTTTGT
1 AAGCTATAAAGATTAATAAGTTTGT
26025586 A
1 A
26025587 TAGAAGTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.45, C:0.04, G:0.16, T:0.35
Consensus pattern (25 bp):
AAGCTATAAAGATTAATAAGTTTGT
Found at i:26029129 original size:93 final size:91
Alignment explanation
Indices: 26029017--26029185 Score: 275
Period size: 93 Copynumber: 1.8 Consensus size: 91
26029007 GCCCCTAAGT
* * *
26029017 GAACTCGGACTCAACTCAACGACCTCAGGCGTTCGCATCCATAAGTGAACTCTGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGACCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTC-A
26029082 CGAGTTCGGATGCCTAGTTACATTTCAC
65 CGAGTT-GGATGCCTAGTTACATTTCAC
**
26029110 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAC
1 GAACTCGGACTCAACTCAACGACCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAC
26029175 GAGTTGGATGC
66 GAGTTGGATGC
26029186 TCAACCATCC
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
91 6 0.08
92 7 0.10
93 58 0.82
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGACCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAC
GAGTTGGATGCCTAGTTACATTTCAC
Found at i:26036195 original size:46 final size:46
Alignment explanation
Indices: 26036123--26036294 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 46
26036113 AACCCGCCCC
* *
26036123 TAAGTGAACTCGGACTCAACTTAACGAGCTCGGGCATTCGTATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGTATCCA
* * *
26036169 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GG-ATGCCTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGTA--TCCA
* * * * *
26036215 TTTCA-CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGTATCCA
*
26036262 TAAGTGAACTCGGACTCAACTCCACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
26036295 ATGCTCAACC
Statistics
Matches: 102, Mismatches: 17, Indels: 14
0.77 0.13 0.11
Matches are distributed among these distances:
44 5 0.05
45 4 0.04
46 58 0.57
47 28 0.27
48 3 0.03
49 4 0.04
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGTATCCA
Found at i:26036289 original size:93 final size:93
Alignment explanation
Indices: 26036128--26036298 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
26036118 GCCCCTAAGT
* * *
26036128 GAACTCGGACTCAACTTAACGAGCTCGGGCATTCGTATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
26036193 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
26036221 GAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
26036286 CGAGTTCGGATGC
66 CGAGTTCGGATGC
26036299 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:26038834 original size:27 final size:26
Alignment explanation
Indices: 26038786--26038845 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
26038776 GCGAGGCTGC
*
26038786 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
26038813 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
26038839 CAAATAT
1 CAGATAT
26038846 ATATGTGGCG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:26038888 original size:69 final size:67
Alignment explanation
Indices: 26038813--26038950 Score: 195
Period size: 67 Copynumber: 2.0 Consensus size: 67
26038803 TCACCAGATA
* * * * *
26038813 CAGATATTGTGGCTAGGCCACCAGAACAAATATATATGTGGCGAAGCGACCAGATTGCAGCGAGG
1 CAGATATTGTGACGAAGCCACCAGAAC--AGATATATGTGGCGAAGCCACCAGATTGCAGCGAGG
26038878 CTGC
64 CTGC
* *
26038882 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
26038947 GC
66 GC
26038949 CA
1 CA
26038951 TAACGCTTCC
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
67 39 0.63
69 23 0.37
ACGTcount: A:0.30, C:0.22, G:0.29, T:0.18
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
GC
Found at i:26038930 original size:27 final size:26
Alignment explanation
Indices: 26038882--26038933 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
26038872 GCGAGGCTGC
*
26038882 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
26038908 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
26038934 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:26050490 original size:43 final size:43
Alignment explanation
Indices: 26050429--26050647 Score: 309
Period size: 43 Copynumber: 5.1 Consensus size: 43
26050419 CCGGTATTAC
* *
26050429 GCCTGCTAGGCACGAAGGCCCGAATACATATCACTGGCA-TGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACT-AA
* *
26050472 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
* *
26050515 GCCTGCTAGGCAAGAAGGCCCTAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
26050558 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
* * * * *
26050601 GCCTACTAGGCACAAAGGCCCGAATATA-AT-ACCAGCACTAG
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
26050642 GCCTGC
1 GCCTGC
26050648 GGGATTTATC
Statistics
Matches: 159, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
41 14 0.09
42 2 0.01
43 143 0.90
ACGTcount: A:0.32, C:0.32, G:0.23, T:0.13
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
Found at i:26051118 original size:41 final size:41
Alignment explanation
Indices: 26051061--26051143 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
26051051 ATAATTTACG
26051061 ATGGTTTTACCCTTACTCACATATATGTCATAGGCATTTTT
1 ATGGTTTTACCCTTACTCACATATATGTCATAGGCATTTTT
*
26051102 ATGGTTTTACCCTTACTCACATATATGTTATAGGCATTTTT
1 ATGGTTTTACCCTTACTCACATATATGTCATAGGCATTTTT
26051143 A
1 A
26051144 CCTATGCTTC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.25, C:0.18, G:0.12, T:0.45
Consensus pattern (41 bp):
ATGGTTTTACCCTTACTCACATATATGTCATAGGCATTTTT
Found at i:26061196 original size:93 final size:93
Alignment explanation
Indices: 26061083--26061254 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
26061073 CGCCCATAAG
* *
26061083 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
26061148 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
26061176 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
26061241 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
26061255 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:26061251 original size:46 final size:46
Alignment explanation
Indices: 26061076--26061251 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
26061066 TGTAACCCGC
* * *
26061076 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
26061122 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
26061172 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
26061215 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
26061252 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:26068657 original size:42 final size:42
Alignment explanation
Indices: 26068611--26068780 Score: 164
Period size: 42 Copynumber: 3.8 Consensus size: 42
26068601 GTAACCCGCC
*
26068611 CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCG
1 CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCG
* *
26068653 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-A
1 CATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCG
* * *
26068699 CATCTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCG
1 CA--TAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCG
*
26068742 CATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 ----CATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
26068781 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 10, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 35 0.33
44 2 0.02
45 3 0.03
46 30 0.29
47 33 0.31
48 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.21
Consensus pattern (42 bp):
CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCG
Found at i:26068712 original size:47 final size:49
Alignment explanation
Indices: 26068653--26068784 Score: 161
Period size: 46 Copynumber: 2.8 Consensus size: 49
26068643 CGGGCGTTCG
*
26068653 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-
1 CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACATC
* *
26068702 C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATC
1 CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATC
*
26068746 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
26068785 TCAACCATCC
Statistics
Matches: 71, Mismatches: 5, Indels: 14
0.79 0.06 0.16
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
44 2 0.03
45 2 0.03
46 29 0.41
47 29 0.41
48 2 0.03
49 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (49 bp):
CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATC
Found at i:26068722 original size:89 final size:90
Alignment explanation
Indices: 26068617--26068784 Score: 275
Period size: 93 Copynumber: 1.8 Consensus size: 90
26068607 CGCCCATAAG
* *
26068617 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCG-CATAAGTGAACTCGGACTCAACTCAACG
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCCATAAGTGAACTCGGACTCAACTCAACG
26068681 AGTTCGGATGCCTAGTTACATCTCA
66 AGTTCGGATGCCTAGTTACATCTCA
*
26068706 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCG---CCATAAGTGAACTCGGACTCAACTCA
26068771 ACGAGTTCGGATGC
63 ACGAGTTCGGATGC
26068785 TCAACCATCC
Statistics
Matches: 72, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
89 33 0.46
93 39 0.54
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (90 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCCATAAGTGAACTCGGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATCTCA
Found at i:26068800 original size:46 final size:44
Alignment explanation
Indices: 26068618--26068800 Score: 144
Period size: 46 Copynumber: 4.0 Consensus size: 44
26068608 GCCCATAAGC
* *** *
26068618 GAACTCGGACTCAACTCAACGAGCTCGG--GCGTTCGCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCAAC-CATCTAGT
*
26068660 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-AGT
* * *
26068707 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTAGT
26068753 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTAGT
26068799 GA
1 GA
26068801 CATGTCACTT
Statistics
Matches: 112, Mismatches: 14, Indels: 26
0.74 0.09 0.17
Matches are distributed among these distances:
42 27 0.24
44 11 0.10
45 1 0.01
46 36 0.32
47 31 0.28
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTAGT
Found at i:26074620 original size:29 final size:29
Alignment explanation
Indices: 26074557--26074624 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
26074547 TAATCAACCA
26074557 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
26074586 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
26074615 CGCACACTTA
1 CGCACACTTA
26074625 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:26074765 original size:29 final size:30
Alignment explanation
Indices: 26074726--26074804 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
26074716 CTTAATAATC
26074726 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
26074756 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
26074785 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
26074805 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:26082776 original size:29 final size:29
Alignment explanation
Indices: 26082713--26082780 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
26082703 TAATCAACCA
26082713 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
26082742 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
26082771 CGCACACTTA
1 CGCACACTTA
26082781 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:26082921 original size:29 final size:30
Alignment explanation
Indices: 26082882--26082960 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
26082872 CTTAATAATC
26082882 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
26082912 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
26082941 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
26082961 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:26091675 original size:7 final size:6
Alignment explanation
Indices: 26091644--26091685 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
26091634 TGAATCCTCC
* * *
26091644 TTTA-T TTTATT TTTATT TTTCTT TTGATT TTTATT TTCATT T
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT T
26091686 AAATTTTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
5 4 0.13
6 27 0.87
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (6 bp):
TTTATT
Found at i:26100418 original size:22 final size:22
Alignment explanation
Indices: 26100390--26100459 Score: 65
Period size: 22 Copynumber: 3.3 Consensus size: 22
26100380 GGATATAGTC
26100390 ACTTAGCACAAATGCCTTCGGG
1 ACTTAGCACAAATGCCTTCGGG
* * * * **
26100412 ACTTAGCCCAGAT---ATAGTC
1 ACTTAGCACAAATGCCTTCGGG
26100431 ACTTAGCACAAATGCCTTCGGG
1 ACTTAGCACAAATGCCTTCGGG
26100453 ACTTAGC
1 ACTTAGC
26100460 CCGGATATAG
Statistics
Matches: 33, Mismatches: 12, Indels: 6
0.65 0.24 0.12
Matches are distributed among these distances:
19 13 0.39
22 20 0.61
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (22 bp):
ACTTAGCACAAATGCCTTCGGG
Found at i:26100494 original size:40 final size:40
Alignment explanation
Indices: 26100324--26100547 Score: 353
Period size: 40 Copynumber: 5.6 Consensus size: 40
26100314 AATCCAAGTA
* * *
26100324 CCTTCGGGATTTAG-CTGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
26100363 CCTTCGGGTCTTAGCCCGGATATAGTCACTTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAC-TAGCACAAATG
*
26100404 CCTTCGGGACTTAGCCCAGATATAGTCACTTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAC-TAGCACAAATG
*
26100445 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
26100485 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
26100525 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
26100548 CATTCGAATA
Statistics
Matches: 173, Mismatches: 9, Indels: 5
0.93 0.05 0.03
Matches are distributed among these distances:
39 12 0.07
40 83 0.48
41 78 0.45
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:26100500 original size:81 final size:81
Alignment explanation
Indices: 26100324--26100547 Score: 346
Period size: 81 Copynumber: 2.8 Consensus size: 81
26100314 AATCCAAGTA
* ** * *
26100324 CCTTCGGGATTTAG-CTGGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCAGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
26100387 GTCACTTAGCACAAATG
65 GTCACTTAGCACAAATG
26100404 CCTTCGGGACTTAGCCCAGATATAGTCACTTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCAGATATAGTCAC-TAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
26100469 GTCAC-TAGCTCAAATG
65 GTCACTTAGCACAAATG
*
26100485 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCAGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
26100548 CATTCGAATA
Statistics
Matches: 134, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
80 47 0.35
81 48 0.36
82 39 0.29
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
CCTTCGGGACTTAGCCCAGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCACTTAGCACAAATG
Found at i:26104692 original size:14 final size:15
Alignment explanation
Indices: 26104673--26104702 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
26104663 ATATTTAACT
26104673 TGTTCTTAATT-ATG
1 TGTTCTTAATTCATG
26104687 TGTTCTTAATTCATG
1 TGTTCTTAATTCATG
26104702 T
1 T
26104703 TTTGATATCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.20, C:0.10, G:0.13, T:0.57
Consensus pattern (15 bp):
TGTTCTTAATTCATG
Found at i:26110818 original size:43 final size:43
Alignment explanation
Indices: 26110757--26110844 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
26110747 ATAAATGAAT
26110757 TAAAAAGAAATAATATCATTTTATATCATATTCTTCCCCAAAA
1 TAAAAAGAAATAATATCATTTTATATCATATTCTTCCCCAAAA
26110800 TAAAAAGAAATAATATCATTTTATATCATATTCTTCCCCAAAA
1 TAAAAAGAAATAATATCATTTTATATCATATTCTTCCCCAAAA
26110843 TA
1 TA
26110845 TACATGGAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.47, C:0.16, G:0.02, T:0.35
Consensus pattern (43 bp):
TAAAAAGAAATAATATCATTTTATATCATATTCTTCCCCAAAA
Found at i:26113152 original size:6 final size:6
Alignment explanation
Indices: 26113071--26113136 Score: 55
Period size: 6 Copynumber: 10.8 Consensus size: 6
26113061 AAGAAACATT
* * *
26113071 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
*
26113120 GTCAGA ATCAGA ATCAG
1 ATCAGA ATCAGA ATCAG
26113137 GTGACAGAAT
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
5 2 0.04
6 41 0.84
7 4 0.08
8 2 0.04
ACGTcount: A:0.47, C:0.15, G:0.21, T:0.17
Consensus pattern (6 bp):
ATCAGA
Found at i:26113171 original size:25 final size:25
Alignment explanation
Indices: 26113092--26113152 Score: 113
Period size: 25 Copynumber: 2.4 Consensus size: 25
26113082 AATCAAAATG
26113092 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
*
26113117 AGAGTCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
26113142 AGAATCAGAAT
1 AGAATCAGAAT
26113153 TAGGTGACAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.44, C:0.15, G:0.25, T:0.16
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAC
Found at i:26113172 original size:19 final size:19
Alignment explanation
Indices: 26113122--26113174 Score: 88
Period size: 19 Copynumber: 2.8 Consensus size: 19
26113112 GTGACAGAGT
*
26113122 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATTAGGTGA
26113141 CAGAATCAGAATTAGGTGA
1 CAGAATCAGAATTAGGTGA
*
26113160 CAGAATTAGAATTAG
1 CAGAATCAGAATTAG
26113175 AATCAGTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.43, C:0.11, G:0.25, T:0.21
Consensus pattern (19 bp):
CAGAATCAGAATTAGGTGA
Found at i:26113208 original size:31 final size:31
Alignment explanation
Indices: 26113141--26113208 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
26113131 AATCAGGTGA
* * *
26113141 CAGAATCAGAATTAGGTGACAGAATTAGAAT
1 CAGAATCAGAATTAGGTAACAGAATCAAAAT
* *
26113172 TAGAATCAGTATTAGGTAACAGAATCAAAAT
1 CAGAATCAGAATTAGGTAACAGAATCAAAAT
26113203 CAGAAT
1 CAGAAT
26113209 GTGAATGCAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.47, C:0.10, G:0.19, T:0.24
Consensus pattern (31 bp):
CAGAATCAGAATTAGGTAACAGAATCAAAAT
Found at i:26113482 original size:67 final size:68
Alignment explanation
Indices: 26113354--26113487 Score: 198
Period size: 67 Copynumber: 2.0 Consensus size: 68
26113344 TCACCAGTTA
* * *
26113354 CAGATATTGTGGCTAGGCCACTAGAACAGATATATATGTGGCAAAGCCACCAGATTGCAGCGAGG
1 CAGATATTGTGACGAAGCCACTAGAACAGA-ATATATGTGGCAAAGCCACCAGATTGCAGCGAGG
26113419 CTAC
65 CTAC
* * *
26113423 CAGATATTGTGACGAAGTCACTAGAACAG-ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGC
1 CAGATATTGTGACGAAGCCACTAGAACAGAATATATGTGGCAAAGCCACCAGATTGCAGCGAGGC
26113487 T
66 T
26113488 GCCATAATGC
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
67 34 0.58
69 25 0.42
ACGTcount: A:0.31, C:0.21, G:0.28, T:0.20
Consensus pattern (68 bp):
CAGATATTGTGACGAAGCCACTAGAACAGAATATATGTGGCAAAGCCACCAGATTGCAGCGAGGC
TAC
Found at i:26113738 original size:27 final size:27
Alignment explanation
Indices: 26113708--26113928 Score: 253
Period size: 27 Copynumber: 8.2 Consensus size: 27
26113698 AACACCCTAG
*
26113708 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAATGGTAATTCTATAAATCGA
* *
26113735 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAATGGTAATTCTATAAATCGA
**
26113762 GGGTAAAATAATAATTCTATAAATCGA
1 GGGTAAAATGGTAATTCTATAAATCGA
*** * *
26113789 GGGTAAAACAATAATTCTGTAAATCAA
1 GGGTAAAATGGTAATTCTATAAATCGA
* * *
26113816 GGATAAAATAGTAATTTTATAAATCGA
1 GGGTAAAATGGTAATTCTATAAATCGA
* *
26113843 GGGTAAAATGGTAATTCTGTAAATTGA
1 GGGTAAAATGGTAATTCTATAAATCGA
* * *
26113870 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTCTATAAATCGA
* * *
26113897 GGGTAAAACGGTAATTCTAGAAACCGA
1 GGGTAAAATGGTAATTCTATAAATCGA
26113924 GGGTA
1 GGGTA
26113929 CTTTGGTAAT
Statistics
Matches: 166, Mismatches: 28, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 166 1.00
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
GGGTAAAATGGTAATTCTATAAATCGA
Found at i:26113936 original size:81 final size:80
Alignment explanation
Indices: 26113708--26113955 Score: 275
Period size: 81 Copynumber: 3.1 Consensus size: 80
26113698 AACACCCTAG
* * *
26113708 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCT-GTAAATCGAGGGTAAAATA
1 GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTAG-AAATCGAGGGTAAAATG
* *
26113772 ATAATTCTATAAATCGA
65 GTAATTCT-TAAATTGA
** * * * ** * *
26113789 GGGTAAAACAATAATTCTGTAAATCAAGGATAAAATAGTAATTTTATAAATCGAGGGTAAAATGG
1 GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTAGAAATCGAGGGTAAAATGG
26113854 TAATTCTGTAAATTGA
66 TAATTCT-TAAATTGA
* ***
26113870 GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTAGAAACCGAGGGTACTTTGG
1 GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTAGAAATCGAGGGTAAAATGG
26113935 TAATT-TTACAAGTTGA
66 TAATTCTTA-AA-TTGA
26113951 GGGTA
1 GGGTA
26113956 TTTCAGTAAT
Statistics
Matches: 136, Mismatches: 28, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
79 2 0.01
80 3 0.02
81 131 0.96
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.30
Consensus pattern (80 bp):
GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTAGAAATCGAGGGTAAAATGG
TAATTCTTAAATTGA
Found at i:26113937 original size:54 final size:54
Alignment explanation
Indices: 26113708--26113942 Score: 310
Period size: 54 Copynumber: 4.4 Consensus size: 54
26113698 AACACCCTAG
26113708 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
** * ** *
26113762 GGGTAAAATAATAATTCTATAAATCGAGGGTAAAACAATAATTCTGTAAATCAA
1 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
* * * *
26113816 GGATAAAATAGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAATTGA
1 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
* * *
26113870 GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTAG-AAACCGA
1 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCT-GTAAATCGA
***
26113924 GGGTACTTTGGTAATTTTA
1 GGGTAAAATGGTAATTTTA
26113943 CAAGTTGAGG
Statistics
Matches: 154, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
54 153 0.99
55 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (54 bp):
GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
Found at i:26115349 original size:6 final size:6
Alignment explanation
Indices: 26115331--26115418 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
26115321 AAGAAACATT
* *
26115331 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- TTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
26115380 ATCAGT ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
26115419 ATGAATGCAA
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 54 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.47, C:0.15, G:0.17, T:0.22
Consensus pattern (6 bp):
ATCAGA
Found at i:26115376 original size:31 final size:31
Alignment explanation
Indices: 26115340--26115418 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
26115330 TATCAGAACT
* * *
26115340 AGAATCAGAATCAGAATCAGAATTAGTTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
26115371 AGAATCAGAATCAGTATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
26115402 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
26115419 ATGAATGCAA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.22
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:26115816 original size:22 final size:22
Alignment explanation
Indices: 26115788--26115852 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
26115778 GCAAATACGT
*
26115788 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
26115810 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
26115832 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
26115853 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:26116635 original size:81 final size:81
Alignment explanation
Indices: 26116307--26116601 Score: 405
Period size: 81 Copynumber: 3.6 Consensus size: 81
26116297 AGTATCTCGG
* * * *
26116307 TAATTCCACCCTACAGGGGTATTT-TAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTATC
1 TAATTCTACCCTACAGGGGTATTTCGA-TAATTCTACCCTACAGGGGTATTTCAATAATTCTACC
*
26116371 TTACAGGGGTATTGCGA
65 CTACAGGGGTATTGCGA
* * * *
26116388 TAATTCTACCCTATAAGGGTATTTCGATAATTCTACCCTATAGGGGTATTTCGATAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAATAATTCTACCC
*
26116453 TACAGGGTTATTGCGA
66 TACAGGGGTATTGCGA
* * * *
26116469 TAATTCTACCCTACAGGGATATTGCGATAATTCTACCTTACAAGGGTATTTCAATAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAATAATTCTACCC
*
26116534 TACAGGGGTATTGCAA
66 TACAGGGGTATTGCGA
* *
26116550 TAATTCTACCCTATAGGGGTA-TTCCAGTAATTCTACCCTACAGGGGTATTTC
1 TAATTCTACCCTACAGGGGTATTTCGA-TAATTCTACCCTACAGGGGTATTTC
26116602 GGTAATTTTA
Statistics
Matches: 186, Mismatches: 26, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
80 3 0.02
81 182 0.98
82 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAATAATTCTACCC
TACAGGGGTATTGCGA
Found at i:26116704 original size:27 final size:27
Alignment explanation
Indices: 26116298--26116692 Score: 364
Period size: 27 Copynumber: 14.6 Consensus size: 27
26116288 ACCTCACAAA
* *
26116298 GTATCTCGGTAATTCCACCCTACAGGG
1 GTATTTCGGTAATTCTACCCTACAGGG
**
26116325 GTATTTTAGTAATTCTACCCTACAGGG
1 GTATTTCGGTAATTCTACCCTACAGGG
* * *
26116352 GTATTTCAGTAATTCTATCTTACAGGG
1 GTATTTCGGTAATTCTACCCTACAGGG
* * * *
26116379 GTATTGCGATAATTCTACCCTATAAGG
1 GTATTTCGGTAATTCTACCCTACAGGG
* *
26116406 GTATTTCGATAATTCTACCCTATAGGG
1 GTATTTCGGTAATTCTACCCTACAGGG
*
26116433 GTATTTCGATAATTCTACCCTACAGGG
1 GTATTTCGGTAATTCTACCCTACAGGG
* * *
26116460 TTATTGCGATAATTCTACCCTACAGGG
1 GTATTTCGGTAATTCTACCCTACAGGG
* * * * *
26116487 ATATTGCGATAATTCTACCTTACAAGG
1 GTATTTCGGTAATTCTACCCTACAGGG
**
26116514 GTATTTCAATAATTCTACCCTACAGGG
1 GTATTTCGGTAATTCTACCCTACAGGG
* ** *
26116541 GTATTGCAATAATTCTACCCTATAGGG
1 GTATTTCGGTAATTCTACCCTACAGGG
* *
26116568 GTATTCCAGTAATTCTACCCTACAGGG
1 GTATTTCGGTAATTCTACCCTACAGGG
* **
26116595 GTATTTCGGTAATTTTA-CAAACTAGGG
1 GTATTTCGGTAATTCTACCCTAC-AGGG
* * **
26116622 GTATTTTGGTAATTTTA-CAAACTAGGG
1 GTATTTCGGTAATTCTACCCTAC-AGGG
* * **
26116649 GTATTTTGGTAATTTTA-CAAACTAGGG
1 GTATTTCGGTAATTCTACCCTAC-AGGG
*
26116676 GTATTTTGGTAATTCTA
1 GTATTTCGGTAATTCTA
26116693 TTCTATAGGG
Statistics
Matches: 328, Mismatches: 39, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
26 3 0.01
27 325 0.99
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.36
Consensus pattern (27 bp):
GTATTTCGGTAATTCTACCCTACAGGG
Found at i:26116717 original size:54 final size:54
Alignment explanation
Indices: 26116576--26116722 Score: 181
Period size: 54 Copynumber: 2.7 Consensus size: 54
26116566 GGGTATTCCA
** * *
26116576 GTAATTCTACCCTACAGGGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTCTATACTATAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
*
26116630 GTAATT-T-TACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTCTATAC-TA-TAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
* * * *
26116684 GTAATTCTATTCTATAGGGGTTTTTTAGTAATTTCACAA
1 GTAATTCTATACTATAGGGGTATTTTGGTAATTTTACAA
26116723 TCGAGGGTAA
Statistics
Matches: 79, Mismatches: 10, Indels: 8
0.81 0.10 0.08
Matches are distributed among these distances:
52 1 0.01
53 2 0.03
54 72 0.91
55 2 0.03
56 2 0.03
ACGTcount: A:0.28, C:0.11, G:0.20, T:0.41
Consensus pattern (54 bp):
GTAATTCTATACTATAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
Found at i:26116755 original size:27 final size:27
Alignment explanation
Indices: 26116721--26116918 Score: 236
Period size: 27 Copynumber: 7.3 Consensus size: 27
26116711 GTAATTTCAC
* * *
26116721 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
26116748 AA-CTGAGGGTAAAATTGTAATTTTATA
1 AATC-GAGGGTAAAATGGTAATTCTATA
*
26116775 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
26116802 AATCAAGGGTAAAATGGAAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * * *
26116829 AATTGAGGGTAAAATGATAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
26116856 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
26116883 AATCGAGGGTAAAATGGTAATTCCACA
1 AATCGAGGGTAAAATGGTAATTCTATA
26116910 AATCGAGGG
1 AATCGAGGG
26116919 CATTTCAGTA
Statistics
Matches: 144, Mismatches: 25, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 142 0.99
28 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:26116839 original size:81 final size:81
Alignment explanation
Indices: 26116721--26116905 Score: 282
Period size: 81 Copynumber: 2.3 Consensus size: 81
26116711 GTAATTTCAC
* * *
26116721 AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATTG-TAATTTTATAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAACTGAGGGTAAAA-TGATAATTTTATAAATCGAGGGT
26116785 AAAACGGTAATTCTATA
65 AAAACGGTAATTCTATA
* * * * *
26116802 AATCAAGGGTAAAATGGAAATTCTATAAATTGAGGGTAAAATGATAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAACTGAGGGTAAAATGATAATTTTATAAATCGAGGGTA
26116867 AAACGGTAATTCTATA
66 AAACGGTAATTCTATA
26116883 AATCGAGGGTAAAATGGTAATTC
1 AATCGAGGGTAAAATGGTAATTC
26116906 CACAAATCGA
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
80 2 0.02
81 91 0.98
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.30
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAACTGAGGGTAAAATGATAATTTTATAAATCGAGGGTA
AAACGGTAATTCTATA
Found at i:26116931 original size:81 final size:82
Alignment explanation
Indices: 26116752--26116938 Score: 245
Period size: 81 Copynumber: 2.3 Consensus size: 82
26116742 TTTGTAAACT
*
26116752 GAGGGTAAAAT-TGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAA
1 GAGGGTAAAATCAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAA
* * *
26116816 TGGAAATTCTATAAATT
66 TGGAAATTCCACAAATC
* * * *
26116833 GAGGGTAAAATGA-TAATTTTGTAAATCGAGGGTGAAACGGTAATTCTATAAATCGAGGGTAAAA
1 GAGGGTAAAATCAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAA
*
26116897 TGGTAATTCCACAAATC
66 TGGAAATTCCACAAATC
* **
26116914 GAGGG-CATTTCAGTAATTTTATAAA
1 GAGGGTAAAATCAGTAATTTTATAAA
26116939 CCAATGGTAT
Statistics
Matches: 91, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
80 3 0.03
81 88 0.97
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (82 bp):
GAGGGTAAAATCAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAA
TGGAAATTCCACAAATC
Found at i:26116950 original size:27 final size:27
Alignment explanation
Indices: 26116915--26117177 Score: 165
Period size: 27 Copynumber: 9.7 Consensus size: 27
26116905 CCACAAATCG
* *
26116915 AGGGCATTTCAGTAATTTTATAAACCA
1 AGGGTATTTCAGTAATTTTACAAACCA
* * *
26116942 ATGGTATTTCTA-TAATTTTAAGAAAGTCA
1 AGGGTATTTC-AGTAATTTT-ACAAA-CCA
* ** *
26116971 AGGGTATTTCTGTAATTTTTTAAATCA
1 AGGGTATTTCAGTAATTTTACAAACCA
* ** **
26116998 GGGGTATTTTGGTAATTTTACAAATTGA
1 AGGGTATTTCAGTAATTTTACAAA-CCA
*
26117026 A-GGTATTTCAGTAATTTCACAAACCA
1 AGGGTATTTCAGTAATTTTACAAACCA
* * *
26117052 ATGGTATTT-TGATAATTTTACAAATCA
1 AGGGTATTTCAG-TAATTTTACAAACCA
* **
26117079 GGGGTATTTTGGTAATTTTACAAACCA
1 AGGGTATTTCAGTAATTTTACAAACCA
* * * *
26117106 GGGGTATTT-TGTTAATTTTATAAACAA
1 AGGGTATTTCAG-TAATTTTACAAACCA
* * *
26117133 AGGATATTTTAGTAATTTTACAAACTA
1 AGGGTATTTCAGTAATTTTACAAACCA
* **
26117160 GGGGTATTTTGGTAATTT
1 AGGGTATTTCAGTAATTT
26117178 GTAACTAAAG
Statistics
Matches: 188, Mismatches: 38, Indels: 20
0.76 0.15 0.08
Matches are distributed among these distances:
26 4 0.02
27 154 0.82
28 12 0.06
29 18 0.10
ACGTcount: A:0.33, C:0.08, G:0.17, T:0.41
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAACCA
Found at i:26116958 original size:54 final size:54
Alignment explanation
Indices: 26116907--26117177 Score: 242
Period size: 54 Copynumber: 5.0 Consensus size: 54
26116897 TGGTAATTCC
* * *
26116907 ACAAATCGAGGGCATTTCAGTAATTTTATAAACCAATGGTATTTCT-ATAATTTT
1 ACAAATCGAGGGTATTTCAGTAATTTTACAAACCAAGGGTATTT-TGATAATTTT
* * * ** * * *
26116961 AAGAAAGTCAAGGGTATTTCTGTAATTTTTTAAATCAGGGGTATTTTGGTAATTTT
1 -ACAAA-TCGAGGGTATTTCAGTAATTTTACAAACCAAGGGTATTTTGATAATTTT
* * * *
26117017 ACAAATTGAAGGTATTTCAGTAATTTCACAAACCAATGGTATTTTGATAATTTT
1 ACAAATCGAGGGTATTTCAGTAATTTTACAAACCAAGGGTATTTTGATAATTTT
** * *
26117071 ACAAATC-AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGTTAATTTT
1 ACAAATCGA-GGGTATTTCAGTAATTTTACAAACCAAGGGTATTTTGATAATTTT
* * * * * * *
26117125 ATAAA-CAAAGGATATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTT
1 ACAAATC-GAGGGTATTTCAGTAATTTTACAAACCAAGGGTATTTTGATAATTT
26117178 GTAACTAAAG
Statistics
Matches: 177, Mismatches: 34, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
53 2 0.01
54 126 0.71
55 10 0.06
56 39 0.22
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (54 bp):
ACAAATCGAGGGTATTTCAGTAATTTTACAAACCAAGGGTATTTTGATAATTTT
Found at i:26117081 original size:81 final size:80
Alignment explanation
Indices: 26116973--26117177 Score: 231
Period size: 81 Copynumber: 2.5 Consensus size: 80
26116963 GAAAGTCAAG
** **
26116973 GGTATTTCTG-TAATTTTTTAAATCAGGGGTATTTTGGTAATTTTACAAA-TTGAAGGTATTTCA
1 GGTATTT-TGATAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCAG-AGGTATTT-A
*
26117036 G-TAATTTCACAAACCAAT
63 GTTAATTTCACAAA-CAAA
* *
26117054 GGTATTTTGATAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGTT
1 GGTATTTTGATAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCAGAGGTATTTAGTT
* *
26117119 AATTTTATAAACAAA
66 AATTTCACAAACAAA
26117134 GGATATTTT-AGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTT
1 GG-TATTTTGA-TAATTTTACAAATC-AGGGGTATTTTGGTAATTT
26117178 GTAACTAAAG
Statistics
Matches: 109, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
80 10 0.09
81 98 0.90
82 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (80 bp):
GGTATTTTGATAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCAGAGGTATTTAGTT
AATTTCACAAACAAA
Found at i:26118294 original size:307 final size:307
Alignment explanation
Indices: 26117760--26118323 Score: 941
Period size: 307 Copynumber: 1.8 Consensus size: 307
26117750 AGCCACAAGG
* * *
26117760 CTTTTTGTGTCATAATTTCTCCAACAATATTCTTAAGGCCTACCTACTACACCCAAGGTTTGATT
1 CTTTTTGTGGCACAATTCCTCCAACAATATTCTTAAGGCCTACCTACTACACCCAAGGTTTGATT
* *
26117825 CACCTTAAACCAAAATTTTTGGTAGAGTCCAGATTTGAACCCAAGACTTCTCCAACACTTCTCAG
66 CACCTTAAACCAAAATTTTTGCTAGAGTCAAGATTTGAACCCAAGACTTCTCCAACACTTCTCAG
*
26117890 CACACTTAACCACTAAAACAAGCCTTCAACTACGAAATTTTCACGCACAACAAAATATTATAAGC
131 CACACTTAACCACTAAAACAAGCCTTCAACTACGAAATTTACACGCACAACAAAATATTATAAGC
* *
26117955 TATCTTCAACCGCTCCCATGCTCAAGGCCCAAAACTTCTAAGCCCAAATTCAGGGTGTTACAGTT
196 TACCTTCAACCGCTCCCATGCTCAAGGCCCAAAACTTCTAAGCCCAAATGCAGGGTGTTACAGTT
26118020 ACTTCCTTGTCCCCTAAGTGGTGCCACCTTGCCACTACACCACACTC
261 ACTTCCTTGTCCCCTAAGTGGTGCCACCTTGCCACTACACCACACTC
*
26118067 CTTTTTGTGGCACAATTCCTCCAACAATATTCTTAAGGCCTACCTACTACACCCAGGGTTTGATT
1 CTTTTTGTGGCACAATTCCTCCAACAATATTCTTAAGGCCTACCTACTACACCCAAGGTTTGATT
* *
26118132 CACCTTAAACCAAAATTTTTGCTAGAGTCAAGGTTTGAACCCAGGACTTCTCCAACACTTCTCAG
66 CACCTTAAACCAAAATTTTTGCTAGAGTCAAGATTTGAACCCAAGACTTCTCCAACACTTCTCAG
* * * *
26118197 CACACTTAACCACTAAAACAAGCCTT-GATTAAGGAAATTTACATGCACAACAAAATATTATAAG
131 CACACTTAACCACTAAAACAAGCCTTCAACT-ACGAAATTTACACGCACAACAAAATATTATAAG
* * * *
26118261 CTGCCTTCAACCGCTCCCATGCTGAAGGCCCAAAACTTCTAGGCCTAAATGCAGGGTGTTACA
195 CTACCTTCAACCGCTCCCATGCTCAAGGCCCAAAACTTCTAAGCCCAAATGCAGGGTGTTACA
26118324 TGCTAGGTTT
Statistics
Matches: 237, Mismatches: 19, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
306 2 0.01
307 235 0.99
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (307 bp):
CTTTTTGTGGCACAATTCCTCCAACAATATTCTTAAGGCCTACCTACTACACCCAAGGTTTGATT
CACCTTAAACCAAAATTTTTGCTAGAGTCAAGATTTGAACCCAAGACTTCTCCAACACTTCTCAG
CACACTTAACCACTAAAACAAGCCTTCAACTACGAAATTTACACGCACAACAAAATATTATAAGC
TACCTTCAACCGCTCCCATGCTCAAGGCCCAAAACTTCTAAGCCCAAATGCAGGGTGTTACAGTT
ACTTCCTTGTCCCCTAAGTGGTGCCACCTTGCCACTACACCACACTC
Found at i:26125431 original size:40 final size:40
Alignment explanation
Indices: 26125333--26125595 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
26125323 TCCTCGTTCA
* * * * *
26125333 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
26125372 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
26125412 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26125452 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
26125492 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
26125532 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
26125572 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
26125596 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:26132793 original size:40 final size:40
Alignment explanation
Indices: 26132651--26132911 Score: 307
Period size: 40 Copynumber: 6.6 Consensus size: 40
26132641 TCCTCGTTCA
* * * * *
26132651 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
26132690 AATGCCTTCGGGACATAACCCGGATTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
26132729 ACTGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26132768 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
26132808 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
26132848 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
26132888 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
26132912 CAGCATTCAA
Statistics
Matches: 196, Mismatches: 20, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
38 26 0.13
39 55 0.28
40 107 0.55
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:26134458 original size:25 final size:26
Alignment explanation
Indices: 26134335--26134508 Score: 264
Period size: 26 Copynumber: 6.8 Consensus size: 26
26134325 GAGGAAGTGC
**
26134335 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
26134361 AAAAGGGCTTATGTCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
26134387 AAAAGGGCTTATGCCCCAGTTTATGG
1 AAAAGGGCTTATGCCCCAGTTTATTG
26134413 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
26134439 AAAAGGGATT-TGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
26134464 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
26134489 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
26134509 ATTAAAGAGG
Statistics
Matches: 138, Mismatches: 10, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
25 57 0.41
26 81 0.59
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:26134711 original size:42 final size:42
Alignment explanation
Indices: 26134652--26134743 Score: 132
Period size: 42 Copynumber: 2.2 Consensus size: 42
26134642 TAGTCTCCCC
** * *
26134652 AAATGGGCTTGCATACATTC-ATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACA-TCAATTGACATTACATATGATATTG
26134694 AAATGGGCTTGCATACATCAATTGACATTACATATGATATTG
1 AAATGGGCTTGCATACATCAATTGACATTACATATGATATTG
26134736 AAATGGGC
1 AAATGGGC
26134744 CTAAGGGCCA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
41 2 0.04
42 43 0.96
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCAATTGACATTACATATGATATTG
Found at i:26134803 original size:31 final size:31
Alignment explanation
Indices: 26134767--26134850 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
26134757 CGTTTACAGT
* *
26134767 AAAGGCTTTGGCCTAGTGATATGAATTATGA
1 AAAGGCTTCGGCCCAGTGATATGAATTATGA
*
26134798 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGAATTATGA
*
26134829 AAAGGCTTCCGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
26134851 TCGAGACTGA
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 5 0.10
31 44 0.90
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATTATGA
Found at i:26137740 original size:20 final size:20
Alignment explanation
Indices: 26137711--26137752 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
26137701 AGCACATGTA
26137711 TTCATAAAATTTCAAAAATT
1 TTCATAAAATTTCAAAAATT
* * *
26137731 TTCATCAAATTTTACAAATT
1 TTCATAAAATTTCAAAAATT
26137751 TT
1 TT
26137753 TATTTTAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.43, C:0.12, G:0.00, T:0.45
Consensus pattern (20 bp):
TTCATAAAATTTCAAAAATT
Found at i:26139960 original size:49 final size:49
Alignment explanation
Indices: 26139903--26140004 Score: 161
Period size: 49 Copynumber: 2.1 Consensus size: 49
26139893 ATGGGCCTTA
* *
26139903 GGCC-ATTTCATTTAGGCCTTAGCCCATTACAGTATCAGTATCAGTGTG
1 GGCCTATTTCATTTACGCCTTAGCCCATTACAGTATCAGTATCACTGTG
* *
26139951 GGCCTATTTCATTTACGTCTTAGCCCATTACAGTATCAGTATTACTGTG
1 GGCCTATTTCATTTACGCCTTAGCCCATTACAGTATCAGTATCACTGTG
26140000 GGCCT
1 GGCCT
26140005 TAGCCCATTT
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
48 4 0.08
49 45 0.92
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.35
Consensus pattern (49 bp):
GGCCTATTTCATTTACGCCTTAGCCCATTACAGTATCAGTATCACTGTG
Found at i:26146764 original size:16 final size:16
Alignment explanation
Indices: 26146740--26146780 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
26146730 TGAATCGACC
*
26146740 AAAGCTGAAATGCCGA
1 AAAGCTGAAATGCCAA
*
26146756 AAAGTTGAAATGCCAA
1 AAAGCTGAAATGCCAA
26146772 AAAGCTGAA
1 AAAGCTGAA
26146781 TGTTTGGCTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.49, C:0.15, G:0.22, T:0.15
Consensus pattern (16 bp):
AAAGCTGAAATGCCAA
Found at i:26147047 original size:29 final size:28
Alignment explanation
Indices: 26146992--26147106 Score: 113
Period size: 29 Copynumber: 4.0 Consensus size: 28
26146982 GTGAGCATGA
* * *
26146992 ATATGAATGTGAATGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
*
26147020 ATATAAATGTGATTTGGGCCCAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
** * *
26147049 ATATACTTGTGATTTGGGCCTAATAGACC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
26147078 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
26147106 A
1 A
26147107 AATACAGGTA
Statistics
Matches: 70, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
28 25 0.36
29 45 0.64
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:26148210 original size:17 final size:18
Alignment explanation
Indices: 26148178--26148211 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26148168 TTTAAGAAGG
26148178 GTTTTCAATGAAAACACA
1 GTTTTCAATGAAAACACA
*
26148196 GTTTTCACT-AAAACAC
1 GTTTTCAATGAAAACAC
26148212 TTCAATGTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (18 bp):
GTTTTCAATGAAAACACA
Found at i:26151269 original size:16 final size:16
Alignment explanation
Indices: 26151243--26151293 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
26151233 TATGAATCGA
* *
26151243 AAAAAGCCGAAATGTC
1 AAAATGCCGAAAAGTC
*
26151259 GAAATGCCGAAAAGTC
1 AAAATGCCGAAAAGTC
* *
26151275 AAAATGTCGAAAAGCC
1 AAAATGCCGAAAAGTC
26151291 AAA
1 AAA
26151294 TGTTTGGCTA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.51, C:0.18, G:0.20, T:0.12
Consensus pattern (16 bp):
AAAATGCCGAAAAGTC
Found at i:26151564 original size:29 final size:28
Alignment explanation
Indices: 26151504--26151617 Score: 115
Period size: 29 Copynumber: 4.0 Consensus size: 28
26151494 GTGAGCATGA
* * ** *
26151504 ATATGAATGTGACTGGGCCTAACAGGCA
1 ATATAAATGTGATTGGGCCTAATGGGCC
26151532 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
26151561 ATATACAA-GTGATTTGGGCCTAATGGGCC
1 ATATA-AATGTGA-TTGGGCCTAATGGGCC
* * *
26151590 ATAT-GATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
26151617 A
1 A
26151618 GATACGGGTA
Statistics
Matches: 75, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
27 17 0.23
28 14 0.19
29 42 0.56
30 2 0.03
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:26156427 original size:27 final size:27
Alignment explanation
Indices: 26156397--26156514 Score: 148
Period size: 27 Copynumber: 4.4 Consensus size: 27
26156387 CCTTAATCGA
*
26156397 TAAAATGACTATTTTGCCCTTTTGAGG
1 TAAAATGACTATTTTGCCCTTATGAGG
*
26156424 TAAAATGACTATTTTTCCCTTATGAGG
1 TAAAATGACTATTTTGCCCTTATGAGG
* * *
26156451 TGAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGAGG
* * *
26156478 TAAAATGACAATTCTG-CCTCTATGTGG
1 TAAAATGACTATTTTGCCCT-TATGAGG
26156505 TAAAATGACT
1 TAAAATGACT
26156515 GAAATGCCCT
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 3 0.04
27 76 0.96
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATGAGG
Found at i:26156523 original size:54 final size:54
Alignment explanation
Indices: 26156411--26156526 Score: 126
Period size: 54 Copynumber: 2.1 Consensus size: 54
26156401 ATGACTATTT
* * * * * ***
26156411 TGCCCTTTTGAGGTAAAATGACTATTTTTCCCTTATGAGGTGAAATGACTGTTT
1 TGCCCTTATGAGGTAAAATGACAATTCTGCCCTTATGAGGTAAAATGACTGAAA
* *
26156465 TGCCCTTATGTGGTAAAATGACAATTCTG-CCTCTATGTGGTAAAATGACTGAAA
1 TGCCCTTATGAGGTAAAATGACAATTCTGCCCT-TATGAGGTAAAATGACTGAAA
26156519 TGCCCTTA
1 TGCCCTTA
26156527 CATGGTAAGT
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
53 3 0.06
54 48 0.94
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (54 bp):
TGCCCTTATGAGGTAAAATGACAATTCTGCCCTTATGAGGTAAAATGACTGAAA
Found at i:26156935 original size:18 final size:18
Alignment explanation
Indices: 26156912--26156956 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
26156902 TACTGTTTAA
26156912 ACTGTTACTG-TACTGATT
1 ACTGTTACTGCT-CTGATT
*
26156930 ACTGTTACTGCTCTGTTT
1 ACTGTTACTGCTCTGATT
26156948 ACTGTTACT
1 ACTGTTACT
26156957 ATAATGGGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 24 0.96
19 1 0.04
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.47
Consensus pattern (18 bp):
ACTGTTACTGCTCTGATT
Found at i:26159173 original size:46 final size:46
Alignment explanation
Indices: 26159123--26159295 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
26159113 TGGTTGAGCA
* *
26159123 TCCGAACTCGTTGAGTTGTGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATG
* * *
26159169 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--ATG
* * *
26159214 CATCCGAACTCGTTGAGTTGAGTCCGAGCTCATTTATGGATGTGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATG
* *
26159262 -CCTGAGCTCGTTGAGTTTAGTCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
26159296 GGGCCGGGTT
Statistics
Matches: 105, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
45 6 0.06
46 55 0.52
47 28 0.27
48 4 0.04
50 6 0.06
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.32
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATG
Found at i:26159284 original size:93 final size:93
Alignment explanation
Indices: 26159120--26159290 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
26159110 GGATGGTTGA
* *
26159120 GCATCCGAACTCGTTGAGTTGTGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGCTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
26159185 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* ** *
26159213 GCATCCGAACTCGTTGAGTTGAGTCCGAGCTCATTTATGGATGTGAATG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGCTCACTTATGGATGCAAATGTCC-GAACTCGTTGAG
*
26159277 TTTAGTCCGAGTTC
65 TTGAGTCCGAGTTC
26159291 ACTTAGGGCC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.31
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGCTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:26159555 original size:19 final size:20
Alignment explanation
Indices: 26159520--26159557 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
26159510 ATAAGGTGGT
26159520 AAGATGGTGAATGATGTTTA
1 AAGATGGTGAATGATGTTTA
26159540 AAGAT-GTGATAT-ATGTTT
1 AAGATGGTGA-ATGATGTTT
26159558 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.34, C:0.00, G:0.26, T:0.39
Consensus pattern (20 bp):
AAGATGGTGAATGATGTTTA
Found at i:26161702 original size:44 final size:43
Alignment explanation
Indices: 26161556--26161718 Score: 170
Period size: 43 Copynumber: 3.8 Consensus size: 43
26161546 GAAAAGCTCG
* *
26161556 TACAATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCAAA
1 TACAATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAA
* * * *
26161598 TATCGATGCC-TCTGTCCCAGACATGGTCTTACACG-AAATGAAG
1 TA-CAATGCCAAC-GTCCCAGACATGGTCTTACACGTAAATCAAA
* * * *
26161641 TACGATGCCAATGTCCTAGAGATGGTCTTACACGTAAATCATAA
1 TACAATGCCAACGTCCCAGACATGGTCTTACACGTAAATCA-AA
* *
26161685 TCCAATGCCAACGTCCTAGACATGGTCTTACACG
1 TACAATGCCAACGTCCCAGACATGGTCTTACACG
26161719 ATAACACATA
Statistics
Matches: 99, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
42 30 0.30
43 38 0.38
44 31 0.31
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
TACAATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAA
Found at i:26167023 original size:6 final size:6
Alignment explanation
Indices: 26167002--26167111 Score: 73
Period size: 6 Copynumber: 17.8 Consensus size: 6
26166992 TAGCAGAACT
* * *
26167002 AGAATC AAAATG AGAATC AGAATC AGAATC AGGTGAT- AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
* * * *
26167051 AGAATT AG-GTGAC AGAATT AGAATC AGAATC AGTATC AGGTAA-C AGAATC
1 AGAATC AGAAT--C AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
*
26167101 AAAATC AGAAT
1 AGAATC AGAAT
26167112 GTGAATGCAG
Statistics
Matches: 79, Mismatches: 16, Indels: 18
0.70 0.14 0.16
Matches are distributed among these distances:
5 5 0.06
6 63 0.80
7 7 0.09
8 4 0.05
ACGTcount: A:0.48, C:0.12, G:0.20, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:26167047 original size:25 final size:25
Alignment explanation
Indices: 26167014--26167083 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
26167004 AATCAAAATG
*
26167014 AGAATCAGAATCAGAATCAGGTGAT
1 AGAATCAGAATCAGAATCAGGTGAC
*
26167039 AGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
*
26167064 AGAATTAGAATCAGAATCAG
1 AGAATCAGAATCAGAATCAG
26167084 TATCAGGTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.46, C:0.11, G:0.23, T:0.20
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAC
Found at i:26167049 original size:31 final size:30
Alignment explanation
Indices: 26167014--26167111 Score: 107
Period size: 31 Copynumber: 3.4 Consensus size: 30
26167004 AATCAAAATG
*
26167014 AGAATCAGAATCAGAATCAGGTGATAGAATC
1 AGAATCAGAATCAG-ATCAGGTGACAGAATC
*
26167045 AGAATCAGAAT----T-AGGTGACAGAATT
1 AGAATCAGAATCAGATCAGGTGACAGAATC
*
26167070 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAG-ATCAGGTGACAGAATC
*
26167101 AAAATCAGAAT
1 AGAATCAGAAT
26167112 GTGAATGCAG
Statistics
Matches: 56, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
25 22 0.39
26 1 0.02
30 1 0.02
31 32 0.57
ACGTcount: A:0.47, C:0.12, G:0.20, T:0.20
Consensus pattern (30 bp):
AGAATCAGAATCAGATCAGGTGACAGAATC
Found at i:26167098 original size:25 final size:25
Alignment explanation
Indices: 26167014--26167111 Score: 97
Period size: 25 Copynumber: 3.7 Consensus size: 25
26167004 AATCAAAATG
*
26167014 AGAATCAGAATCAGAATCAGGTGAT
1 AGAATCAGAATCAGAATCAGGTAAT
*
26167039 AGAATCAGAATCAGAATTAGGTGACAGAATT
1 AGAATCAGAATCAGAATCAGGT-----AA-T
* *
26167070 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTAAT
*
26167095 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
26167112 GTGAATGCAG
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
25 36 0.60
26 2 0.03
30 1 0.02
31 21 0.35
ACGTcount: A:0.47, C:0.12, G:0.20, T:0.20
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTAAT
Found at i:26167376 original size:27 final size:26
Alignment explanation
Indices: 26167328--26167379 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
26167318 GTGAGGCTGC
*
26167328 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
26167354 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
26167380 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:26167446 original size:67 final size:67
Alignment explanation
Indices: 26167297--26167439 Score: 216
Period size: 67 Copynumber: 2.1 Consensus size: 67
26167287 TATATATCTA
* * * * *
26167297 TGGCGAAGCCACCAGATTACTGTGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATA
1 TGGCGAGGCCACCAGATTGCAGCGAGGCTACCAGATATTGTGACGAAGTCACCAGAACAGATATA
26167362 TG
66 TG
*
26167364 TGGCGAGGCCACCAGATTGCAGCGAGGCTACCTGATATTGTGACGGAA-TCACCAGAACAGATAT
1 TGGCGAGGCCACCAGATTGCAGCGAGGCTACCAGATATTGTGAC-GAAGTCACCAGAACAGATAT
26167428 ATG
65 ATG
26167431 TGGCGAGGC
1 TGGCGAGGC
26167440 TGCCAGAACG
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
67 66 0.96
68 3 0.04
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (67 bp):
TGGCGAGGCCACCAGATTGCAGCGAGGCTACCAGATATTGTGACGAAGTCACCAGAACAGATATA
TG
Found at i:26167694 original size:27 final size:27
Alignment explanation
Indices: 26167664--26167930 Score: 320
Period size: 27 Copynumber: 9.9 Consensus size: 27
26167654 AACACCCTAG
** * *
26167664 GGGTAAAATGGTAATTTTATAAATAGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
26167691 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
26167718 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* **
26167745 GGGTAAAACAATAATTTTGTAAATAAA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
26167772 GGGTAAAACAGTAATTTTGTTAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * * *
26167799 GGTTAAAATAATAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
26167826 GGGTAAAATAGTAATTTTGTAAAT-AA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * * *
26167852 GGGTAAAATAATAATTCTGTAAACCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
26167879 GGGTAAAATAGTAATTTTGTAAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
26167906 GGGTAAAACAGTAATTTTGTAAATC
1 GGGTAAAACAGTAATTTTGTAAATC
26167931 TAGGATATTT
Statistics
Matches: 207, Mismatches: 32, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 22 0.11
27 185 0.89
ACGTcount: A:0.43, C:0.06, G:0.20, T:0.31
Consensus pattern (27 bp):
GGGTAAAACAGTAATTTTGTAAATCGA
Found at i:26167799 original size:81 final size:81
Alignment explanation
Indices: 26167664--26167929 Score: 363
Period size: 81 Copynumber: 3.3 Consensus size: 81
26167654 AACACCCTAG
** * * * * *
26167664 GGGTAAAATGGTAATTTTATAAATAGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAG
1 GGGTAAAACAGTAATTTTGTAAATAAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATAG
26167729 TAATTTTGTAAATCGA
66 TAATTTTGTAAATCGA
* * * * *
26167745 GGGTAAAACAATAATTTTGTAAATAAAGGGTAAAACAGTAATTTTGTTAATCGAGGTTAAAATAA
1 GGGTAAAACAGTAATTTTGTAAATAAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATAG
*
26167810 TAATTCTGTAAATCGA
66 TAATTTTGTAAATCGA
* * * *
26167826 GGGTAAAATAGTAATTTTGTAAAT-AAGGGTAAAATAATAATTCTGTAAACCGAGGGTAAAATAG
1 GGGTAAAACAGTAATTTTGTAAATAAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATAG
*
26167890 TAATTTTGTAAATTGA
66 TAATTTTGTAAATCGA
26167906 GGGTAAAACAGTAATTTTGTAAAT
1 GGGTAAAACAGTAATTTTGTAAAT
26167930 CTAGGATATT
Statistics
Matches: 160, Mismatches: 25, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
80 70 0.44
81 90 0.56
ACGTcount: A:0.43, C:0.05, G:0.20, T:0.32
Consensus pattern (81 bp):
GGGTAAAACAGTAATTTTGTAAATAAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATAG
TAATTTTGTAAATCGA
Found at i:26167974 original size:134 final size:134
Alignment explanation
Indices: 26167675--26167937 Score: 346
Period size: 134 Copynumber: 2.0 Consensus size: 134
26167665 GGTAAAATGG
* * ** * * * * *
26167675 TAATTTTATAAATAGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTTTGTAA
1 TAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAAT-AAGGGTAAAACAATAATTCTGTAA
* * *
26167740 ATCGAGGGTAAAACAATAATTTTGTAAATAAAGGGTAAAACAGTAATTTTGTTAATCGAGGTTAA
65 ACCGAGGGTAAAACAATAATTTTGTAAATAAAGGGTAAAACAGTAATTTTGTAAATCGAGGATAA
26167805 AATAA
130 AATAA
* *
26167810 TAATTCTGTAAATCGAGGGTAAAATAGTAATTTTGTAAATAAGGGTAAAATAATAATTCTGTAAA
1 TAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAATAAGGGTAAAACAATAATTCTGTAAA
* * ** *
26167875 CCGAGGGTAAAATAGTAATTTTGTAAATTGAGGGTAAAACAGTAATTTTGTAAATCTAGGATA
66 CCGAGGGTAAAACAATAATTTTGTAAATAAAGGGTAAAACAGTAATTTTGTAAATCGAGGATA
26167938 TTTGGGTAAT
Statistics
Matches: 109, Mismatches: 19, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
134 76 0.70
135 33 0.30
ACGTcount: A:0.43, C:0.06, G:0.19, T:0.32
Consensus pattern (134 bp):
TAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAATAAGGGTAAAACAATAATTCTGTAAA
CCGAGGGTAAAACAATAATTTTGTAAATAAAGGGTAAAACAGTAATTTTGTAAATCGAGGATAAA
ATAA
Found at i:26175224 original size:44 final size:44
Alignment explanation
Indices: 26175178--26175334 Score: 171
Period size: 43 Copynumber: 3.6 Consensus size: 44
26175168 TGTGAAATCG
* * * *
26175178 TGTAAGAACATGTCTGGGACATTGGCATCGAT-TCGGTATTTACG
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATCTG-ATTTACA
*
26175222 TGTAAGACCACATCTGGGACATTGGCATCG-TATCTGATTT-CA
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATCTGATTTACA
* ** * *
26175264 TGTAAGATCC-TGTCTGGGGTAGTGGCATCGATATTTGA-TTACA
1 TGTAAGA-CCACGTCTGGGACATTGGCATCGATATCTGATTTACA
26175307 TGTAAGACCACGTCTGGGACATTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
26175335 TGTACGATCT
Statistics
Matches: 93, Mismatches: 15, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
42 27 0.29
43 36 0.39
44 30 0.32
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (44 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATATCTGATTTACA
Found at i:26183041 original size:27 final size:27
Alignment explanation
Indices: 26183005--26183058 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
26182995 TGTCATGTGA
* *
26183005 AATTGAATGTCAAATTATTGTTACATG
1 AATTGAATGTCAAATTACTATTACATG
*
26183032 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGTCAAATTACTATTACATG
26183059 GGTTGCATGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.39, C:0.07, G:0.13, T:0.41
Consensus pattern (27 bp):
AATTGAATGTCAAATTACTATTACATG
Found at i:26183476 original size:50 final size:49
Alignment explanation
Indices: 26183299--26183543 Score: 240
Period size: 49 Copynumber: 4.9 Consensus size: 49
26183289 TCTATTGTGA
* * * **
26183299 GGTCACGTATGTAGTACTAAATGCAAACTACTACGTGTACC-GAATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ATAATT
** * * * * *
26183348 GGTCGTATGTGTAGTACTAAGTGCAGGGTACTATGCGTACCTGATTACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAATT
* * * **
26183398 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
26183448 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
26183498 GGTCGCATGTGTCGTACTAAGTGCAGGCTATTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
26183544 GCCTTGTCTA
Statistics
Matches: 158, Mismatches: 35, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
49 72 0.46
50 51 0.32
51 35 0.22
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:26190282 original size:14 final size:15
Alignment explanation
Indices: 26190265--26190293 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26190255 TAACGAAAAT
26190265 TTCACACAT-ATAAA
1 TTCACACATAATAAA
26190279 TTCACACATAATAAA
1 TTCACACATAATAAA
26190294 CATAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:26195388 original size:14 final size:15
Alignment explanation
Indices: 26195371--26195402 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
26195361 TAAATCAAAA
26195371 AAATTCACACAT-AT
1 AAATTCACACATAAT
26195385 AAATTCACACATAAT
1 AAATTCACACATAAT
26195400 AAA
1 AAA
26195403 CATAGAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.25
Consensus pattern (15 bp):
AAATTCACACATAAT
Found at i:26198373 original size:8 final size:8
Alignment explanation
Indices: 26198362--26198386 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
26198352 TTAAACTTCT
26198362 TCACTTAC
1 TCACTTAC
26198370 TCACTTAC
1 TCACTTAC
26198378 TCACTTAC
1 TCACTTAC
26198386 T
1 T
26198387 TAAATACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.36, G:0.00, T:0.40
Consensus pattern (8 bp):
TCACTTAC
Found at i:26198394 original size:16 final size:16
Alignment explanation
Indices: 26198375--26198405 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26198365 CTTACTCACT
26198375 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
26198391 TACTTACTTACTTAA
1 TACTCACTTACTTAA
26198406 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:26198411 original size:20 final size:20
Alignment explanation
Indices: 26198372--26198411 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
26198362 TCACTTACTC
* *
26198372 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
26198392 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
26198412 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:26198851 original size:55 final size:54
Alignment explanation
Indices: 26198599--26198853 Score: 208
Period size: 55 Copynumber: 4.8 Consensus size: 54
26198589 ACACGGGTAC
* * *
26198599 CTTACC-ATTGCCATGACTTGCCATGGTCTTACGTGGTATCCTT---TT-GAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* * * * *
26198648 CTTACC-ATTACCATGTCTCGACATGGTCTTACATGGCATTCTTGCCTTATG-AA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAAA
* * * * *
26198701 CTCA-CAAATGCCAAGCCTTGGCATGGTCTTACATTGG-A-CCTTTTCCTTATAGAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACA-TGGTATCC-TTGCC-T-TAGAAA
* * * *
26198756 CTTATCAA-TGTCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* *
26198809 CCTTACCAATTGTCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
26198854 CAACCCTAAT
Statistics
Matches: 163, Mismatches: 27, Indels: 26
0.75 0.12 0.12
Matches are distributed among these distances:
49 36 0.22
52 4 0.02
53 37 0.23
54 16 0.10
55 65 0.40
56 5 0.03
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (54 bp):
CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
Found at i:26203137 original size:14 final size:13
Alignment explanation
Indices: 26203083--26203140 Score: 53
Period size: 13 Copynumber: 4.4 Consensus size: 13
26203073 TGACACTTTA
*
26203083 TTTTGAAGATATG
1 TTTTAAAGATATG
* * *
26203096 TTTTCAAGTTAAG
1 TTTTAAAGATATG
* *
26203109 TTTTTAAGCTATG
1 TTTTAAAGATATG
26203122 TTTTAAAAGATATG
1 TTTT-AAAGATATG
26203136 TTTTA
1 TTTTA
26203141 CGTGTGCTCC
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
13 25 0.69
14 11 0.31
ACGTcount: A:0.31, C:0.03, G:0.16, T:0.50
Consensus pattern (13 bp):
TTTTAAAGATATG
Found at i:26203195 original size:14 final size:13
Alignment explanation
Indices: 26203170--26203208 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 13
26203160 CTATGCTTTC
26203170 AAGTATGTTTTAT
1 AAGTATGTTTTAT
26203183 AAGTATAGTTTTAT
1 AAGTAT-GTTTTAT
26203197 AAGCTATGTTTT
1 AAG-TATGTTTT
26203209 TGGAATCTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 6 0.25
14 15 0.62
15 3 0.12
ACGTcount: A:0.31, C:0.03, G:0.15, T:0.51
Consensus pattern (13 bp):
AAGTATGTTTTAT
Found at i:26208131 original size:22 final size:22
Alignment explanation
Indices: 26208105--26208152 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
26208095 AAACCATGAC
26208105 ATACATAAGTCATGGACCTAAT
1 ATACATAAGTCATGGACCTAAT
26208127 ATACATAAGTCATGGACCTAAT
1 ATACATAAGTCATGGACCTAAT
26208149 ATAC
1 ATAC
26208153 TAACTTTTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.27
Consensus pattern (22 bp):
ATACATAAGTCATGGACCTAAT
Found at i:26211146 original size:20 final size:20
Alignment explanation
Indices: 26211099--26211146 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
26211089 TTAAAGAAGC
*
26211099 AATTAAATCAATTTGATTAA
1 AATTAAATCAAATTGATTAA
* **
26211119 AATCAAATCAAATTGATTGG
1 AATTAAATCAAATTGATTAA
26211139 AATTAAAT
1 AATTAAAT
26211147 AAAGTCAGGA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.50, C:0.06, G:0.08, T:0.35
Consensus pattern (20 bp):
AATTAAATCAAATTGATTAA
Found at i:26213849 original size:40 final size:40
Alignment explanation
Indices: 26213755--26213870 Score: 171
Period size: 40 Copynumber: 2.9 Consensus size: 40
26213745 TACTCGAATG
*
26213755 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
26213796 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
*
26213836 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG
26213871 TGACCATAAG
Statistics
Matches: 67, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
39 1 0.01
40 37 0.55
41 28 0.42
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:26217410 original size:81 final size:81
Alignment explanation
Indices: 26217187--26217498 Score: 278
Period size: 81 Copynumber: 3.9 Consensus size: 81
26217177 ATGGCAAGAT
** * ** *
26217187 TAAATCCCAAAACAGAATTATTTAATTAAATCTTGTTTAGAAACAAAATC--AA---AATAAAAT
1 TAAATCCTGAAACAG-ATTATTCAATTATTTCTTGTTTGGAAACAAAATCAAAATCGAATAAAAT
*
26217247 ATGTTAAACAGC-AGAA
65 CTGTTAAACAGCGAGAA
* * * * *
26217263 TAAATCCCGAAACAGAAATATTTAATTAATTT-TTCGTTTGGAAATAAAATCAAAATCAAATAAA
1 TAAATCCTGAAACAG-ATTATTCAATT-ATTTCTT-GTTTGGAAACAAAATCAAAATCGAATAAA
*
26217327 ATCTGTTAAACAGCGAAAA
63 ATCTGTTAAACAGCGAGAA
* * **
26217346 TAAATCCTGAAACAGATTATTGAATTATTTCTTGTTTGGAAACAATATCAAAAAGGAATAAAATC
1 TAAATCCTGAAACAGATTATTCAATTATTTCTTGTTTGGAAACAAAATCAAAATCGAATAAAATC
* * ** *
26217411 TATTGAATGGTGAGAA
66 TGTTAAACAGCGAGAA
* * ** * *
26217427 TAAATCCTGAAATAGATTATTCAATTGTTTCTCATTTGGAAACAAAATTAGAATCGAATAAAATC
1 TAAATCCTGAAACAGATTATTCAATTATTTCTTGTTTGGAAACAAAATCAAAATCGAATAAAATC
*
26217492 TTTTAAA
66 TGTTAAA
26217499 TGGCAGGATT
Statistics
Matches: 193, Mismatches: 34, Indels: 13
0.80 0.14 0.05
Matches are distributed among these distances:
76 27 0.14
77 16 0.08
79 2 0.01
81 101 0.52
82 30 0.16
83 17 0.09
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.31
Consensus pattern (81 bp):
TAAATCCTGAAACAGATTATTCAATTATTTCTTGTTTGGAAACAAAATCAAAATCGAATAAAATC
TGTTAAACAGCGAGAA
Found at i:26217501 original size:81 final size:80
Alignment explanation
Indices: 26217259--26217536 Score: 250
Period size: 81 Copynumber: 3.4 Consensus size: 80
26217249 GTTAAACAGC
* * * * * * * *
26217259 AGAATAAATCCCGAAACAGAAATATTTAATTAATTTTTCGTTTGGAAATAAAATCAAAATCAAAT
1 AGAATAAATCCTGAAATAG-ATTATTAAATT-ATTTCTCATTTGGAAACAAAATCAAAATCGAAT
* * *
26217324 AAAATCTGTTAAACAGCG
64 AAAATCTATTAAA-TGGG
* * * ** * **
26217342 AAAATAAATCCTGAAACAGATTATTGAATTATTTCTTGTTTGGAAACAATATCAAAAAGGAATAA
1 AGAATAAATCCTGAAATAGATTATTAAATTATTTCTCATTTGGAAACAAAATCAAAATCGAATAA
*
26217407 AATCTATTGAATGGTG
66 AATCTATTAAATGG-G
* * * *
26217423 AGAATAAATCCTGAAATAGATTATTCAATTGTTTCTCATTTGGAAACAAAATTAGAATCGAATAA
1 AGAATAAATCCTGAAATAGATTATTAAATTATTTCTCATTTGGAAACAAAATCAAAATCGAATAA
* *
26217488 AATCTTTTAAATGGC
66 AATCTATTAAATGGG
* * *
26217503 AGGATTAAATCCAGAAATATATTATTAAATTATT
1 A-GAATAAATCCTGAAATAGATTATTAAATTATT
26217537 AATTTTTATT
Statistics
Matches: 159, Mismatches: 34, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
80 2 0.01
81 131 0.82
82 9 0.06
83 17 0.11
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.32
Consensus pattern (80 bp):
AGAATAAATCCTGAAATAGATTATTAAATTATTTCTCATTTGGAAACAAAATCAAAATCGAATAA
AATCTATTAAATGGG
Found at i:26218181 original size:20 final size:20
Alignment explanation
Indices: 26218156--26218204 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
26218146 AGGAGCAATT
*
26218156 AAATCAATTTGATTAAAATC
1 AAATCAAATTGATTAAAATC
**
26218176 AAATCAAATTGATTGGAATC
1 AAATCAAATTGATTAAAATC
*
26218196 AAATAAAAT
1 AAATCAAAT
26218205 CAAGACATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.53, C:0.08, G:0.08, T:0.31
Consensus pattern (20 bp):
AAATCAAATTGATTAAAATC
Found at i:26225918 original size:10 final size:10
Alignment explanation
Indices: 26225892--26225985 Score: 53
Period size: 10 Copynumber: 10.0 Consensus size: 10
26225882 TTAAGTAAAA
26225892 TTAAATTAA-
1 TTAAATTAAT
*
26225901 TCAAATTAAT
1 TTAAATTAAT
26225911 TTAAATTAAT
1 TTAAATTAAT
*
26225921 TTGATATT--T
1 TT-AAATTAAT
26225930 TTGGAAATTAAT
1 TT--AAATTAAT
**
26225942 TTTGATTAA-
1 TTAAATTAAT
*
26225951 GT-AA--AA-
1 TTAAATTAAT
26225957 TTAAATTAA-
1 TTAAATTAAT
26225966 TTAAATTAAT
1 TTAAATTAAT
26225976 TTAAATTAAT
1 TTAAATTAAT
26225986 ATGATAGTTT
Statistics
Matches: 67, Mismatches: 9, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
6 3 0.04
7 2 0.03
8 1 0.01
9 23 0.34
10 31 0.46
11 4 0.06
12 3 0.04
ACGTcount: A:0.47, C:0.01, G:0.05, T:0.47
Consensus pattern (10 bp):
TTAAATTAAT
Found at i:26225939 original size:65 final size:65
Alignment explanation
Indices: 26225860--26226074 Score: 360
Period size: 65 Copynumber: 3.3 Consensus size: 65
26225850 AATCTAAGTG
*
26225860 ATTTTTGGGAAATTAATTTTGATTAAGTAAAATTAAATTAATCAAATTAATTTAAATTAATTTGA
1 ATTTTT-GGAAATTAATTTTGATTAAGTAAAATTAAATTAATCAAATTAATTTAAATTAATATGA
26225925 T
65 T
*
26225926 ATTTTTGGAAATTAATTTTGATTAAGTAAAATTAAATTAATTAAATTAATTTAAATTAATATGAT
1 ATTTTTGGAAATTAATTTTGATTAAGTAAAATTAAATTAATCAAATTAATTTAAATTAATATGAT
* *
26225991 AGTTTT-GAAATTTAATTTTGATTAAGTAAAATTAAATTAATCAAATTAATTTAAATTAATATGG
1 ATTTTTGGAAA-TTAATTTTGATTAAGTAAAATTAAATTAATCAAATTAATTTAAATTAATATGA
26226055 T
65 T
*
26226056 ATTTTTAGAAATTAATTTT
1 ATTTTTGGAAATTAATTTT
26226075 TAAGTCAGAC
Statistics
Matches: 141, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
64 4 0.03
65 127 0.90
66 10 0.07
ACGTcount: A:0.44, C:0.01, G:0.08, T:0.47
Consensus pattern (65 bp):
ATTTTTGGAAATTAATTTTGATTAAGTAAAATTAAATTAATCAAATTAATTTAAATTAATATGAT
Found at i:26225969 original size:9 final size:9
Alignment explanation
Indices: 26225955--26225985 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
26225945 GATTAAGTAA
26225955 AATTAAATT
1 AATTAAATT
26225964 AATTAAATT
1 AATTAAATT
26225973 AATTTAAATT
1 AA-TTAAATT
26225983 AAT
1 AAT
26225986 ATGATAGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (9 bp):
AATTAAATT
Found at i:26230720 original size:20 final size:20
Alignment explanation
Indices: 26230695--26230741 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
26230685 GAACTTTGAG
26230695 AAGTTTTAGGAAAACTTAAA
1 AAGTTTTAGGAAAACTTAAA
*
26230715 AAGTTTTAGGAAAACTTAGA
1 AAGTTTTAGGAAAACTTAAA
26230735 AAGTTTT
1 AAGTTTT
26230742 CCCATAAAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.45, C:0.04, G:0.17, T:0.34
Consensus pattern (20 bp):
AAGTTTTAGGAAAACTTAAA
Found at i:26239144 original size:18 final size:17
Alignment explanation
Indices: 26239121--26239156 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
26239111 TGTGGGTCCG
26239121 ATTGCAAAAAAGGACAAA
1 ATTGCAAAAAAGG-CAAA
*
26239139 ATTGCATAAAAGGCAAA
1 ATTGCAAAAAAGGCAAA
26239156 A
1 A
26239157 GTTTCATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.58, C:0.11, G:0.17, T:0.14
Consensus pattern (17 bp):
ATTGCAAAAAAGGCAAA
Found at i:26240256 original size:47 final size:44
Alignment explanation
Indices: 26240185--26240356 Score: 186
Period size: 47 Copynumber: 3.7 Consensus size: 44
26240175 TTATTTGTGT
26240185 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-C-CATTATGAGA
26240231 GCCAGTGTAAGACCATGTCTGGGACATAGCATCGG-CATTGA-GACGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATT-ATGA-GA
* * * * *
26240277 GTGCTAGTGTAAGACCTGCCTGGGACATGCATCGGACTCGATGATGATA
1 --GCCAGTGTAAGACATGTCTGGGACATGCATCGG-C-C-ATTATGAGA
26240326 GCCAGTGTAAGACATGTCTGGGACATGCATC
1 GCCAGTGTAAGACATGTCTGGGACATGCATC
26240357 AGGTAAGAGT
Statistics
Matches: 107, Mismatches: 8, Indels: 21
0.79 0.06 0.15
Matches are distributed among these distances:
45 6 0.06
46 22 0.21
47 54 0.50
48 18 0.17
49 3 0.03
50 4 0.04
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.22
Consensus pattern (44 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATTATGAGA
Found at i:26240349 original size:94 final size:93
Alignment explanation
Indices: 26240183--26240356 Score: 260
Period size: 94 Copynumber: 1.9 Consensus size: 93
26240173 GGTTATTTGT
* * *
26240183 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATG
1 GTGCCAGTGTAAGACATGCCTGGGACATGCATCGGACACATGATGAGAGCCAGTGTAAGACCATG
26240248 TCTGGGACATAGCATCGGCATTGAGACGA
66 TCTGGGACAT-GCATCGGCATTGAGACGA
* * * *
26240277 GTGCTAGTGTAAGACCTGCCTGGGACATGCATCGGACTCGATGATGATAGCCAGTGTAAGA-CAT
1 GTGCCAGTGTAAGACATGCCTGGGACATGCATCGGACAC-ATGATGAGAGCCAGTGTAAGACCAT
26240341 GTCTGGGACATGCATC
65 GTCTGGGACATGCATC
26240357 AGGTAAGAGT
Statistics
Matches: 72, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
93 5 0.07
94 48 0.67
95 19 0.26
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.22
Consensus pattern (93 bp):
GTGCCAGTGTAAGACATGCCTGGGACATGCATCGGACACATGATGAGAGCCAGTGTAAGACCATG
TCTGGGACATGCATCGGCATTGAGACGA
Done.