Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 83 of 250
Found at i:26258219 original size:14 final size:15
Alignment explanation
Indices: 26258200--26258228 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26258190 TGTCGAAACT
26258200 AAAAAGAAAA-AAAG
1 AAAAAGAAAAGAAAG
26258214 AAAAAGAAAAGAAAG
1 AAAAAGAAAAGAAAG
26258229 GAAGCTAGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAAGAAAG
Found at i:26267886 original size:15 final size:15
Alignment explanation
Indices: 26267866--26267899 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
26267856 TTCAATTACT
26267866 TTTAATTTAGT-TTAA
1 TTTAATTTA-TCTTAA
26267881 TTTAATTTATCTTAA
1 TTTAATTTATCTTAA
26267896 TTTA
1 TTTA
26267900 TTTTTAATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 1 0.06
15 17 0.94
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (15 bp):
TTTAATTTATCTTAA
Found at i:26270301 original size:46 final size:46
Alignment explanation
Indices: 26270251--26270423 Score: 194
Period size: 46 Copynumber: 3.7 Consensus size: 46
26270241 TGGTTGAGCA
*
26270251 TCCGATCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
26270297 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
26270342 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
26270390 -CCAGAGCTTGTTGAGTTGAGTCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
26270424 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 10, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 57 0.53
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:26270407 original size:93 final size:93
Alignment explanation
Indices: 26270248--26270418 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
26270238 GGATGGTTGA
* *
26270248 GCATCCGATCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
26270313 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
26270341 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCAGAGCTTGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
26270405 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
26270419 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:26280605 original size:12 final size:12
Alignment explanation
Indices: 26280588--26280627 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
26280578 TACCAAACTT
26280588 ATCATACATTTA
1 ATCATACATTTA
*
26280600 ATCATACATTTC
1 ATCATACATTTA
26280612 A-CATACAATTTA
1 ATCATAC-ATTTA
26280624 ATCA
1 ATCA
26280628 ATTCAAATAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 5 0.21
12 17 0.71
13 2 0.08
ACGTcount: A:0.42, C:0.20, G:0.00, T:0.38
Consensus pattern (12 bp):
ATCATACATTTA
Found at i:26280637 original size:20 final size:20
Alignment explanation
Indices: 26280609--26280647 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
26280599 AATCATACAT
*
26280609 TTCACATACAATTT-AATCAA
1 TTCAAATAC-ATTTCAATCAA
26280629 TTCAAATACATTTCAATCA
1 TTCAAATACATTTCAATCA
26280648 CAACTAATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.44, C:0.21, G:0.00, T:0.36
Consensus pattern (20 bp):
TTCAAATACATTTCAATCAA
Found at i:26282926 original size:41 final size:41
Alignment explanation
Indices: 26282799--26282944 Score: 181
Period size: 41 Copynumber: 3.6 Consensus size: 41
26282789 TACTCGAATG
*
26282799 ATATCCGGGCTAAGTCCCGAAGG-ATTTTGTGCTAAGCAACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTTGTGCT-AGCGACT
* *
26282840 ACATCCGGACTAAGAT-CCGAAGGCA-TTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTTGTGCTAGCGACT
* * *
26282880 ATATCCGGGCTAAGTCCCGAAGGCATTTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTTGTGCTAGCGACT
* *
26282921 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
26282945 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
39 1 0.01
40 27 0.30
41 61 0.67
42 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTTGTGCTAGCGACT
Found at i:26286438 original size:23 final size:24
Alignment explanation
Indices: 26286412--26286460 Score: 91
Period size: 23 Copynumber: 2.1 Consensus size: 24
26286402 CGCCTGCTAG
26286412 GGCTTATGCTATAC-TGCCCGCGA
1 GGCTTATGCTATACGTGCCCGCGA
26286435 GGCTTATGCTATACGTGCCCGCGA
1 GGCTTATGCTATACGTGCCCGCGA
26286459 GG
1 GG
26286461 ATGCTTCTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 14 0.56
24 11 0.44
ACGTcount: A:0.16, C:0.29, G:0.31, T:0.24
Consensus pattern (24 bp):
GGCTTATGCTATACGTGCCCGCGA
Found at i:26291644 original size:40 final size:40
Alignment explanation
Indices: 26291550--26291694 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
26291540 TACTCGAATG
*
26291550 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
26291591 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
26291631 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
26291671 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
26291695 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:26306013 original size:47 final size:47
Alignment explanation
Indices: 26305799--26306068 Score: 161
Period size: 49 Copynumber: 5.7 Consensus size: 47
26305789 TGGGATGAGT
* * * * *
26305799 TGCCAATGCCATGTCCCAGACATGGTTTTACACTGGCTATTG-TCATCGAG
1 TGCCGATG-CATGTCCCAGACATGGTCTTACACTAGC-A-CGCTC-TCAAG
* * * * *
26305849 -GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATATATACG
1 TGCCGATG-CATGTCCCAGACATGGTCTTACACTAGCACGC-TCT-CA-A-G
* * * *
26305900 TGCTGATGCCATGT-CCAGACATGGTCTTATACTAGCACAACTCTTAA-
1 TGCCGATG-CATGTCCCAGACATGGTCTTACACTAGCAC-GCTCTCAAG
*
26305947 --CTGATGCATGTCCCAGACAT-GTCTTACACTAGCACGCGTCTCAA-
1 TGCCGATGCATGTCCCAGACATGGTCTTACACTAGCACGC-TCTCAAG
26305991 TGCCGATGTCATGTCCCAGACATGGTCTTACACT-G---GCTCTCATAATG
1 TGCCGATG-CATGTCCCAGACATGGTCTTACACTAGCACGCTCTC--AA-G
26306038 TGGCCGATGCATGTCCCAGACAT-GTCTTACA
1 T-GCCGATGCATGTCCCAGACATGGTCTTACA
26306069 TTGGCACACA
Statistics
Matches: 182, Mismatches: 20, Indels: 40
0.75 0.08 0.17
Matches are distributed among these distances:
43 5 0.03
44 26 0.14
45 16 0.09
46 13 0.07
47 30 0.16
48 18 0.10
49 34 0.19
50 3 0.02
51 25 0.14
52 12 0.07
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (47 bp):
TGCCGATGCATGTCCCAGACATGGTCTTACACTAGCACGCTCTCAAG
Found at i:26306193 original size:15 final size:15
Alignment explanation
Indices: 26306173--26306206 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
26306163 CCATTCTCAG
26306173 TTCACAATATAGCAA
1 TTCACAATATAGCAA
* *
26306188 TTCACACTATATCAA
1 TTCACAATATAGCAA
26306203 TTCA
1 TTCA
26306207 ATGACAATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.24, G:0.03, T:0.32
Consensus pattern (15 bp):
TTCACAATATAGCAA
Found at i:26313520 original size:47 final size:49
Alignment explanation
Indices: 26313313--26313632 Score: 254
Period size: 47 Copynumber: 6.7 Consensus size: 49
26313303 GGGATAAGTT
* **
26313313 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATTGTCATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAG
* * * * **
26313362 GCCGATGCCAAGGCCCAGACATGGTCTTACACTAGCTCTCGTATATATATATG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATC--AT-CATCGA-G
* * * *
26313415 TGCTGATGCCATGT-CCAGACATGGTCTTATACTAGC-A-CAAC-TCTTA-
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATC-GAG
* * *
26313461 ACCAATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATCATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAG
* * * *
26313508 GCCGATG-CATGTCCTAGACAT-GTCTTACACTAGC-ACTCGTC-TCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTA-TCATCATCGAG
* * * *
26313554 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTGATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAG
*
26313602 GTCGATG-CATGTCCCAGACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
26313633 GGCACACAAA
Statistics
Matches: 215, Mismatches: 40, Indels: 35
0.74 0.14 0.12
Matches are distributed among these distances:
44 16 0.07
45 13 0.06
46 25 0.12
47 64 0.30
48 23 0.11
49 37 0.17
51 2 0.01
52 3 0.01
53 22 0.10
54 10 0.05
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAG
Found at i:26313609 original size:94 final size:95
Alignment explanation
Indices: 26313315--26313637 Score: 297
Period size: 94 Copynumber: 3.4 Consensus size: 95
26313305 GATAAGTTGC
* * * * *
26313315 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TTGTCATCGAGGCCGATGCCAAGGCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGC-ACTCGTC-TC-AAGCCGATGCCATGTCCCA
* *
26313379 GACATGGTCTTACACTAGCTCTCGTATATATATATGT
63 GACATGGTCTTACACTAGCTCT-G-ATA-ATGT-GGT
* * * *
26313416 GCTGATGCCATGT-CCAGACATGGTCTTATACTAGCACAAC-TCTTAA-CCAATG-CATGTCCCA
1 -C-GATGCCATGTCCCAGACATGGTCTTACACTAGCAC-TCGTCTCAAGCCGATGCCATGTCCCA
* * * * * *
26313477 GACAT-GTCTTACACTGGCTATCATCATCGAGGC
63 GACATGGTCTTACACTAGCTCTGATAAT-GTGGT
*
26313510 CGATG-CATGTCCTAGACAT-GTCTTACACTAGCACTCGTCTCAATGCCGATGCCATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGTCTCAA-GCCGATGCCATGTCCCAGA
26313573 CATGGTCTTACACTAGCTCTGATAATGTGGT
65 CATGGTCTTACACTAGCTCTGATAATGTGGT
*
26313604 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCAC
26313638 ACAAATAACC
Statistics
Matches: 181, Mismatches: 30, Indels: 28
0.76 0.13 0.12
Matches are distributed among these distances:
90 1 0.01
91 24 0.13
92 11 0.06
93 6 0.03
94 52 0.29
95 20 0.11
97 14 0.08
98 12 0.07
99 5 0.03
100 1 0.01
101 2 0.01
102 23 0.13
103 10 0.06
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.27
Consensus pattern (95 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGTCTCAAGCCGATGCCATGTCCCAGAC
ATGGTCTTACACTAGCTCTGATAATGTGGT
Found at i:26323303 original size:23 final size:23
Alignment explanation
Indices: 26323277--26323322 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
26323267 AATTGTAACA
26323277 ATGTTTATCATATGAACTTACAT
1 ATGTTTATCATATGAACTTACAT
26323300 ATGTTTATCATATGAACTTACAT
1 ATGTTTATCATATGAACTTACAT
26323323 CGTACTCGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.43
Consensus pattern (23 bp):
ATGTTTATCATATGAACTTACAT
Found at i:26324512 original size:70 final size:70
Alignment explanation
Indices: 26324394--26324533 Score: 253
Period size: 70 Copynumber: 2.0 Consensus size: 70
26324384 AGTCCGTAAT
* * *
26324394 TTTCTTTTCTTGATCTAAATGTAATCAAAATTAACTTATTTAATTATCTCTTTATTCAATTTAGT
1 TTTCCTTTCTTGATCTAAATGTAATAAAAATTAACTTATTTAATTATCTCTCTATTCAATTTAGT
26324459 CTAAA
66 CTAAA
26324464 TTTCCTTTCTTGATCTAAATGTAATAAAAATTAACTTATTTAATTATCTCTCTATTCAATTTAGT
1 TTTCCTTTCTTGATCTAAATGTAATAAAAATTAACTTATTTAATTATCTCTCTATTCAATTTAGT
26324529 CTAAA
66 CTAAA
26324534 ATTCACATTA
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
70 67 1.00
ACGTcount: A:0.34, C:0.14, G:0.04, T:0.49
Consensus pattern (70 bp):
TTTCCTTTCTTGATCTAAATGTAATAAAAATTAACTTATTTAATTATCTCTCTATTCAATTTAGT
CTAAA
Found at i:26329588 original size:19 final size:19
Alignment explanation
Indices: 26329548--26329586 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
26329538 AGGCCTTCGA
26329548 GGCCTAAAACATACATCTG
1 GGCCTAAAACATACATCTG
26329567 GGCCTAAAACATACAT-TG
1 GGCCTAAAACATACATCTG
26329585 GG
1 GG
26329587 GCTATTCAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.21
Consensus pattern (19 bp):
GGCCTAAAACATACATCTG
Found at i:26334734 original size:40 final size:40
Alignment explanation
Indices: 26334677--26334899 Score: 324
Period size: 40 Copynumber: 5.6 Consensus size: 40
26334667 GATGATAATG
* * * *
26334677 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTAATTCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* * *
26334717 GGGCTAAGTCCCAAAGGCATTTGTGCGAGTTAGTAATTTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
26334757 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
26334797 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
* **
26334837 GGGCTAAGTCCCGAAGGCATTTGTGTGAACTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
26334877 GGGCTAAGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
26334900 AGTGAGTAGC
Statistics
Matches: 170, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 2 0.01
40 168 0.99
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:26334913 original size:40 final size:41
Alignment explanation
Indices: 26334677--26334932 Score: 321
Period size: 40 Copynumber: 6.4 Consensus size: 41
26334667 GATGATAATG
* * * *
26334677 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTA-ATTCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATTCC
* * *
26334717 GGGCTAAGTCCCAAAGGCATTTGTGCGAGTTAGTA-ATTTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATTCC
26334757 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATTCC
26334797 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATTCC
* **
26334837 GGGCTAAGTCCCGAAGGCATTTGTGTGAACTACTATA-TCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATTCC
* *
26334877 GGGCTAAGTCCCGAAGGCATTTGAGTGAG-TAGCTATA-TCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATTCC
* *
26334917 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
26334933 TACTTGGTTT
Statistics
Matches: 198, Mismatches: 16, Indels: 5
0.90 0.07 0.02
Matches are distributed among these distances:
39 16 0.08
40 181 0.91
41 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (41 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATTCC
Found at i:26337603 original size:15 final size:15
Alignment explanation
Indices: 26337585--26337618 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
26337575 ATGAAGAAGC
26337585 CCAAAATAAAGAAAT
1 CCAAAATAAAGAAAT
* *
26337600 CCAAGATAAGGAAAT
1 CCAAAATAAAGAAAT
26337615 CCAA
1 CCAA
26337619 TTTACAACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.59, C:0.18, G:0.12, T:0.12
Consensus pattern (15 bp):
CCAAAATAAAGAAAT
Found at i:26343516 original size:28 final size:26
Alignment explanation
Indices: 26343484--26343535 Score: 68
Period size: 28 Copynumber: 1.9 Consensus size: 26
26343474 AAAATAATTA
26343484 AAATTAAATATGTTAATAATTTAAGTGT
1 AAATTAAATAT-TTAATAA-TTAAGTGT
* *
26343512 AAATTAATTATTTTATAATTAAGT
1 AAATTAAATATTTAATAATTAAGT
26343536 ATGAATTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 6 0.27
27 6 0.27
28 10 0.45
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (26 bp):
AAATTAAATATTTAATAATTAAGTGT
Found at i:26346115 original size:53 final size:54
Alignment explanation
Indices: 26346058--26346169 Score: 136
Period size: 55 Copynumber: 2.1 Consensus size: 54
26346048 CTGACTTATT
* * * * * * *
26346058 CACACAGCCATAAGACA-CGCGTGTGTCTAGCCCGTGTAACTCTTTGACTTGCC
1 CACACAGCCACAAGACAGCCCGTCTATCTAGCCCATGCAACTCTCTGACTTGCC
*
26346111 CACACGGCCACAAGACAGGCCCGTCTATCTAGCCCATGCAACTCTCTGACTTGCC
1 CACACAGCCACAAGACA-GCCCGTCTATCTAGCCCATGCAACTCTCTGACTTGCC
26346166 CACA
1 CACA
26346170 TGGCCTGGAA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
53 15 0.31
55 34 0.69
ACGTcount: A:0.24, C:0.37, G:0.19, T:0.21
Consensus pattern (54 bp):
CACACAGCCACAAGACAGCCCGTCTATCTAGCCCATGCAACTCTCTGACTTGCC
Found at i:26360622 original size:40 final size:40
Alignment explanation
Indices: 26360539--26360724 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
26360529 TTGAATGATG
* * * *
26360539 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACAAAA
* *
26360579 TCCGGATTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGATACAAAA
*
26360619 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACAAAA
* * *
26360659 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATAC-AAAA
* *
26360700 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
26360725 AACGAGGAGC
Statistics
Matches: 129, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
39 1 0.01
40 114 0.88
41 13 0.10
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACAAAA
Found at i:26360676 original size:80 final size:82
Alignment explanation
Indices: 26360539--26360724 Score: 247
Period size: 80 Copynumber: 2.3 Consensus size: 82
26360529 TTGAATGATG
* *
26360539 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGATTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAAAATCCGGATTAAGATCCGAAGGCATT
26360603 TGTGCGAGATACTA-AA
66 TGTGCGAGATACTATAA
* * * *
26360619 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACAAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAAAATCCGGATTAAGAT-CCGAAGGCAT
* *
26360682 TTGTGCGGGTTACTATAA
65 TTGTGCGAGATACTATAA
*
26360700 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26360725 AACGAGGAGC
Statistics
Matches: 93, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
79 1 0.01
80 83 0.89
81 9 0.10
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAAAATCCGGATTAAGATCCGAAGGCATT
TGTGCGAGATACTATAA
Found at i:26360742 original size:80 final size:79
Alignment explanation
Indices: 26360539--26360757 Score: 221
Period size: 80 Copynumber: 2.7 Consensus size: 79
26360529 TTGAATGATG
** * * *
26360539 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGATTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTGACAATATCCGGGTTAAG-TCCGAAGGCATT
26360603 TGTGCGAGATACTAAA
64 TGTGCGAGATACTAAA
* ** * *
26360619 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACAAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACAATATCCGGGTTAAGT-CCGAAGGCATTT
* *
26360684 GTGCGGGTTACTATAA
65 GTGCGAGATACTA-AA
* * *
26360700 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CAATATCCGGGTT-AAGTCCGAAGG
26360758 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
79 13 0.11
80 96 0.81
81 9 0.08
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACAATATCCGGGTTAAGTCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:26363424 original size:86 final size:87
Alignment explanation
Indices: 26363280--26363441 Score: 228
Period size: 86 Copynumber: 1.9 Consensus size: 87
26363270 CAATGTTAAC
26363280 GTCCCAGACATGGTCTTACATGTAATAAAATGTCGATGCCACTGTCCCAGACAGGGTCTTACACG
1 GTCCCAGACATGGTCTTACATGTAATAAAATGTCGATGCCACTGTCCCAGACAGGGTCTTACACG
26363345 A-AAC-CATATACGACACCGAT
66 ATAACACATATACGACACCGAT
*
26363365 GTCCCAGACATGGTCTTACATGTAAATCTCAAAT-T-GATGCCAAC-GTCCCAGAC-GTGGTCTT
1 GTCCCAGACATGGTCTTACATGT-AA--TAAAATGTCGATGCC-ACTGTCCCAGACAG-GGTCTT
26363426 ACACGATAACACATAT
61 ACACGATAACACATAT
26363442 TGGAATCCTA
Statistics
Matches: 69, Mismatches: 1, Indels: 11
0.85 0.01 0.14
Matches are distributed among these distances:
85 24 0.35
86 29 0.42
87 6 0.09
88 10 0.14
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (87 bp):
GTCCCAGACATGGTCTTACATGTAATAAAATGTCGATGCCACTGTCCCAGACAGGGTCTTACACG
ATAACACATATACGACACCGAT
Found at i:26365195 original size:20 final size:20
Alignment explanation
Indices: 26365170--26365212 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
26365160 AGCAAACACA
26365170 ATGGCAGCTAACTCAAAGTC
1 ATGGCAGCTAACTCAAAGTC
26365190 ATGGCAGCTAACTCAAAGTC
1 ATGGCAGCTAACTCAAAGTC
26365210 ATG
1 ATG
26365213 TGTTGGATAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.21
Consensus pattern (20 bp):
ATGGCAGCTAACTCAAAGTC
Found at i:26375998 original size:49 final size:49
Alignment explanation
Indices: 26375832--26376056 Score: 288
Period size: 49 Copynumber: 4.5 Consensus size: 49
26375822 TGAGGTCGCA
* * * * * *
26375832 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACGGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA--TTGGTCACG
* * **
26375883 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACG
26375933 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * * *
26375982 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
*
26376031 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
26376057 TGCATACCAG
Statistics
Matches: 154, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
49 78 0.51
50 44 0.29
51 32 0.21
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:26376012 original size:99 final size:99
Alignment explanation
Indices: 26375825--26376066 Score: 315
Period size: 99 Copynumber: 2.4 Consensus size: 99
26375815 TCTATTGTGA
* * *
26375825 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACGGTGATCACGTGTGTAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGAAAAC-GTGATCACGTGTGTAG
**
26375890 TACTAAGTGCAGGCTACTACGTGTATCAAATGGTT
65 TACTAAGTGCAGGCTACTACGTGTATCAAATAATT
* * * * *
26375925 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TTGGTCACGTGTGTAG
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGAAAACGTGATCACGTGTGTAG
**
26375989 TACTAAGTGCAGGCTACTACGTGTATCGGATAATT
65 TACTAAGTGCAGGCTACTACGTGTATCAAATAATT
* * * *
26376024 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCATACCAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAG
26376067 TTAGCTTTGG
Statistics
Matches: 123, Mismatches: 18, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
98 37 0.30
99 45 0.37
101 41 0.33
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (99 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGAAAACGTGATCACGTGTGTAGT
ACTAAGTGCAGGCTACTACGTGTATCAAATAATT
Found at i:26379081 original size:15 final size:15
Alignment explanation
Indices: 26379061--26379125 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
26379051 GTATCTTAGG
26379061 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
26379076 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
26379091 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
26379106 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
26379120 TTTCTT
1 TTTCTT
26379126 GTTATCTTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 12 0.28
15 27 0.63
16 4 0.09
ACGTcount: A:0.09, C:0.14, G:0.14, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:26381439 original size:49 final size:49
Alignment explanation
Indices: 26381367--26381504 Score: 213
Period size: 49 Copynumber: 2.8 Consensus size: 49
26381357 CACGTGTCTA
* *
26381367 GTGTGTAGTATTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCAC
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCAC
*
26381416 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGC
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCAC
* * * *
26381465 ATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
26381505 GCTTTGGCTA
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 82 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (49 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCAC
Found at i:26381447 original size:106 final size:108
Alignment explanation
Indices: 26381260--26381454 Score: 297
Period size: 106 Copynumber: 1.8 Consensus size: 108
26381250 TGAGGTCGCA
* *
26381260 TGTGTAGTACTAAGTGTAGGCTACTATTCGTACCCGAAAACTGTGATCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTAGTCGTACCCGAAAACTGTGATCACGTGTGTAGTACTAAG
*
26381325 TGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTCTAG
66 TGCAGGCTACTACGTGTACCAGATGGTTAGGTCACGTGTCTAG
* * * *
26381368 TGTGTAGTATTAAGTGCAGGCTACTACGT-GTACCGGATAA-T-TGGTCACGTGTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTA-GTCGTACCCGAAAACTGTGATCACGTGTGTAGTACTAA
26381430 GTGCAGGCTACTACGTGTACCAGAT
65 GTGCAGGCTACTACGTGTACCAGAT
26381455 AATTGGTCGC
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
106 44 0.56
107 1 0.01
108 33 0.42
109 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.30
Consensus pattern (108 bp):
TGTGTAGTACTAAGTGCAGGCTACTAGTCGTACCCGAAAACTGTGATCACGTGTGTAGTACTAAG
TGCAGGCTACTACGTGTACCAGATGGTTAGGTCACGTGTCTAG
Found at i:26389250 original size:92 final size:93
Alignment explanation
Indices: 26389082--26389251 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
26389072 GCCCCTAAGT
* * *
26389082 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAATTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
26389147 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
26389175 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCACA-AA-TGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATC-CATAAGTGAACTCGGACTCAACTCA
26389238 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
26389252 TCAACCATCC
Statistics
Matches: 72, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
92 32 0.44
93 38 0.53
94 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:26389706 original size:30 final size:30
Alignment explanation
Indices: 26389670--26389730 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
26389660 CATTTAATAC
* *
26389670 AAACTTTGGCAAAATTACATTTTTTCCCCT
1 AAACTTTGGCAAAATTACACTTTTGCCCCT
* *
26389700 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACACTTTTGCCCCT
26389730 A
1 A
26389731 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACACTTTTGCCCCT
Found at i:26396867 original size:28 final size:28
Alignment explanation
Indices: 26396835--26396917 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 28
26396825 AACTGTGATC
26396835 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
*
26396863 AC--GTGTA-T-C-AA-TGGTTAGG-T-C-
1 ACGTGTGTAGTACTAAGT-G-CAGGCTACT
26396884 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
26396912 ACGTGT
1 ACGTGT
26396918 ACCAGATAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 22
0.64 0.03 0.33
Matches are distributed among these distances:
21 2 0.05
22 2 0.05
23 9 0.21
24 5 0.12
25 5 0.12
26 9 0.21
27 2 0.05
28 8 0.19
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:26396956 original size:47 final size:47
Alignment explanation
Indices: 26396785--26397019 Score: 269
Period size: 47 Copynumber: 4.9 Consensus size: 47
26396775 TGTGAGGTCG
* * * * *
26396785 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGAT
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGT
* **
26396834 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA-ATGGTTAGGT
1 CA--TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGT
26396883 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGT
1 CA--TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGT
26396932 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-C-GATAATTGGT
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGT
* * *
26396977 CGCATGTGTAGTACTATGTGCAGGCTACTATGTCTACCAGATA
1 --CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
26397020 GCTTTGGCTA
Statistics
Matches: 164, Mismatches: 14, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
45 10 0.06
46 1 0.01
47 63 0.38
48 2 0.01
49 52 0.32
50 5 0.03
51 31 0.19
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (47 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGT
Found at i:26400025 original size:15 final size:15
Alignment explanation
Indices: 26400005--26400069 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
26399995 GTATCTTGGG
26400005 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
26400020 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
26400035 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
26400050 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
26400064 TTTCTT
1 TTTCTT
26400070 GTTATCTTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 12 0.28
15 27 0.63
16 4 0.09
ACGTcount: A:0.09, C:0.14, G:0.14, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:26400037 original size:30 final size:31
Alignment explanation
Indices: 26400001--26400069 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
26399991 TATCGTATCT
26400001 TGGGTTTCTT-TAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCT-TGGATTTCTTTATTC
26400031 TGGGTTT-TTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCTTGGATTTCTTTATTC
*
26400061 -GGTTTTCTT
1 TGGGTTTCTT
26400070 GTTATCTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 7 0.20
30 27 0.77
31 1 0.03
ACGTcount: A:0.09, C:0.13, G:0.17, T:0.61
Consensus pattern (31 bp):
TGGGTTTCTTCTATCTTGGATTTCTTTATTC
Found at i:26402373 original size:49 final size:49
Alignment explanation
Indices: 26402207--26402444 Score: 298
Period size: 49 Copynumber: 4.8 Consensus size: 49
26402197 TGAGGTCGCA
* * * * *
26402207 TGTGTAGTAATAAGTGCAGGCTACTATGCGTACTC-GAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATAA-T-TGGTCACG
* **
26402258 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACG
26402308 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* ** *
26402357 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * *
26402406 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
26402445 GCTTTGGCTA
Statistics
Matches: 166, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
49 88 0.53
50 47 0.28
51 31 0.19
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:26402381 original size:99 final size:100
Alignment explanation
Indices: 26402200--26402444 Score: 325
Period size: 99 Copynumber: 2.5 Consensus size: 100
26402190 TCTATTGTGA
* * *
26402200 GGTCGCATGTGTAGTAATAAGTGCAGGCTACTATGCGTACTC-GAAAACTGTGATCACGTGTGTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTAC-CAGATAACTGTGATCACGTGTGTA
* **
26402264 GTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
65 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
26402300 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCACGTGTGTA
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGTGATCACGTGTGTA
*
26402363 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
65 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
** *
26402399 GGTTGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
26402445 GCTTTGGCTA
Statistics
Matches: 126, Mismatches: 17, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
98 40 0.32
99 45 0.36
100 2 0.02
101 39 0.31
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.29
Consensus pattern (100 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGTGATCACGTGTGTAG
TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:26410782 original size:55 final size:55
Alignment explanation
Indices: 26410716--26410822 Score: 144
Period size: 55 Copynumber: 1.9 Consensus size: 55
26410706 GTCTGGGACG
* ** *
26410716 TTGGCATCGATATTTGATT-TCGACATCTGTGTTCGTGTAAGACCACGTTTAATAC
1 TTGGCATCGATATGTGATTCT-GACATCTGTGCGCGAGTAAGACCACGTTTAATAC
* *
26410771 TTGGCATCGATATGTGATTCTGATATGTGTGCGCGAGTAAGACCACGTTTAA
1 TTGGCATCGATATGTGATTCTGACATCTGTGCGCGAGTAAGACCACGTTTAA
26410823 GACCACGTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
55 44 0.98
56 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.36
Consensus pattern (55 bp):
TTGGCATCGATATGTGATTCTGACATCTGTGCGCGAGTAAGACCACGTTTAATAC
Found at i:26410825 original size:12 final size:12
Alignment explanation
Indices: 26410808--26410834 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
26410798 TGTGCGCGAG
26410808 TAAGACCACGTT
1 TAAGACCACGTT
26410820 TAAGACCACGTT
1 TAAGACCACGTT
26410832 TAA
1 TAA
26410835 TACGTTGGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.26
Consensus pattern (12 bp):
TAAGACCACGTT
Found at i:26410851 original size:68 final size:67
Alignment explanation
Indices: 26410753--26410890 Score: 224
Period size: 68 Copynumber: 2.0 Consensus size: 67
26410743 TGTGTTCGTG
*
26410753 TAAGACCACGTTTAATACTTGGCATCGATATGTGA-TTCTGATATGTGTGCGCGAGTAAGACCAC
1 TAAGACCACGTTTAATACTTGGCATCGATATATGATTTC-GATATGTGTGCGCGAGTAAGACCAC
*
26410817 GTT
65 ATT
*
26410820 TAAGACCACGTTTAATACGTTGGCATCGATATATGATTTCGATATGTGTGTGCGAGTAAGACCAC
1 TAAGACCACGTTTAATAC-TTGGCATCGATATATGATTTCGATATGTGTGCGCGAGTAAGACCAC
26410885 ATT
65 ATT
26410888 TAA
1 TAA
26410891 TACATTGGAA
Statistics
Matches: 66, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
67 18 0.27
68 45 0.68
69 3 0.05
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (67 bp):
TAAGACCACGTTTAATACTTGGCATCGATATATGATTTCGATATGTGTGCGCGAGTAAGACCACA
TT
Found at i:26410882 original size:56 final size:56
Alignment explanation
Indices: 26410820--26411105 Score: 394
Period size: 56 Copynumber: 5.1 Consensus size: 56
26410810 AGACCACGTT
* * * *
26410820 TAAGACCACGTTTAATACGTTGGCATCGATATATGATTTCGATATGTGTGTGCGAG
1 TAAGACCACGTTTAATACATTGGCATCGATATGTGATTCCGATATGTGTGTACGAG
* * *
26410876 TAAGACCACATTTAATACATTGGAATCGATATGTGATTCCAATATGTGTGTACGAG
1 TAAGACCACGTTTAATACATTGGCATCGATATGTGATTCCGATATGTGTGTACGAG
* * * *
26410932 TAAGACCACATTTAATACGTTGGCATCGAT-TTTGATTCCGATATGTGTGTTCGAG
1 TAAGACCACGTTTAATACATTGGCATCGATATGTGATTCCGATATGTGTGTACGAG
* * *
26410987 TAAGAGCACGTTTAATACATTGACATCGATATGTGATTCCGATATGTGTGTGCGAG
1 TAAGACCACGTTTAATACATTGGCATCGATATGTGATTCCGATATGTGTGTACGAG
* * * * *
26411043 TAAGACCATGTTTAATACATTGGCATCAATAGGTGATTCCAATATGTGTTTACGAG
1 TAAGACCACGTTTAATACATTGGCATCGATATGTGATTCCGATATGTGTGTACGAG
26411099 TAAGACC
1 TAAGACC
26411106 TTGTGTAGGA
Statistics
Matches: 203, Mismatches: 26, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
55 48 0.24
56 155 0.76
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (56 bp):
TAAGACCACGTTTAATACATTGGCATCGATATGTGATTCCGATATGTGTGTACGAG
Found at i:26410987 original size:111 final size:112
Alignment explanation
Indices: 26410820--26411105 Score: 407
Period size: 111 Copynumber: 2.6 Consensus size: 112
26410810 AGACCACGTT
* *
26410820 TAAGACCACGTTTAATACGTTGGCATCGATATATGATTTCGATATGTGTGTGCGAGTAAGACCAC
1 TAAGACCACGTTTAATACGTTGGCATCGATATATGATTCCGATATGTGTGTTCGAGTAAGACCAC
26410885 ATTTAATACATTGGA-ATCGATATGTGATTCCAATATGTGTGTACGAG
66 ATTTAATACATT-GACATCGATATGTGATTCCAATATGTGTGTACGAG
* * *
26410932 TAAGACCACATTTAATACGTTGGCATCGAT-TTTGATTCCGATATGTGTGTTCGAGTAAGAGCAC
1 TAAGACCACGTTTAATACGTTGGCATCGATATATGATTCCGATATGTGTGTTCGAGTAAGACCAC
* * *
26410996 GTTTAATACATTGACATCGATATGTGATTCCGATATGTGTGTGCGAG
66 ATTTAATACATTGACATCGATATGTGATTCCAATATGTGTGTACGAG
* * * ** *
26411043 TAAGACCATGTTTAATACATTGGCATCAATAGGTGATTCCAATATGTGT-TTACGAGTAAGACC
1 TAAGACCACGTTTAATACGTTGGCATCGATATATGATTCCGATATGTGTGTT-CGAGTAAGACC
26411106 TTGTGTAGGA
Statistics
Matches: 155, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
110 2 0.01
111 99 0.64
112 54 0.35
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (112 bp):
TAAGACCACGTTTAATACGTTGGCATCGATATATGATTCCGATATGTGTGTTCGAGTAAGACCAC
ATTTAATACATTGACATCGATATGTGATTCCAATATGTGTGTACGAG
Found at i:26411126 original size:167 final size:167
Alignment explanation
Indices: 26410820--26411128 Score: 438
Period size: 167 Copynumber: 1.9 Consensus size: 167
26410810 AGACCACGTT
* * *
26410820 TAAGACCACGTTTAATACGTTGGCATCGATATATGATTTCGATATGTGTGTGCGAGTAAGACCAC
1 TAAGACCACGTTTAATACATTGACATCGATATATGATTCCGATATGTGTGTGCGAGTAAGACCAC
* * * *
26410885 ATTTAATACATTGGAATCGATATGTGATTCCAATATGTGTGTACGAGTAAGACCACATTTAATAC
66 ATTTAATACATTGGAATCAATAGGTGATTCCAATATGTGTGTACGAGTAAGACCACATGTAAGAC
***
26410950 GTTGGCATCGATTTTGATTCCGATATGTGTGTTCGAG
131 AACGGCATCGATTTTGATTCCGATATGTGTGTTCGAG
* * *
26410987 TAAGAGCACGTTTAATACATTGACATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCAT
1 TAAGACCACGTTTAATACATTGACATCGATATATGATTCCGATATGTGTGTGCGAGTAAGACCAC
* * * *** *
26411052 GTTTAATACATTGGCATCAATAGGTGATTCCAATATGTGTTTACGAGTAAGACCTTGTGTAGGAC
66 ATTTAATACATTGGAATCAATAGGTGATTCCAATATGTGTGTACGAGTAAGACCACATGTAAGAC
26411117 AACGGCATCGAT
131 AACGGCATCGAT
26411129 ATGTAATTAC
Statistics
Matches: 122, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
167 122 1.00
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (167 bp):
TAAGACCACGTTTAATACATTGACATCGATATATGATTCCGATATGTGTGTGCGAGTAAGACCAC
ATTTAATACATTGGAATCAATAGGTGATTCCAATATGTGTGTACGAGTAAGACCACATGTAAGAC
AACGGCATCGATTTTGATTCCGATATGTGTGTTCGAG
Found at i:26411635 original size:20 final size:20
Alignment explanation
Indices: 26411610--26411650 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
26411600 AATTAAGCAT
26411610 AATTTA-AAATATATTAAAAC
1 AATTTATAAATATA-TAAAAC
*
26411630 AATTTATACATATATAAAAC
1 AATTTATAAATATATAAAAC
26411650 A
1 A
26411651 TGTAACACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (20 bp):
AATTTATAAATATATAAAAC
Found at i:26419908 original size:28 final size:27
Alignment explanation
Indices: 26419863--26419918 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 27
26419853 ATAAAAATAA
*
26419863 TGAAAATTCAATATTTTAATAATTTAAG
1 TGAAAATTCAATATTTT-ATAATTAAAG
*
26419891 TGAAAATT-AATTTGTTTATAATTAAAG
1 TGAAAATTCAATAT-TTTATAATTAAAG
26419918 T
1 T
26419919 ATGAATTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 14 0.56
28 11 0.44
ACGTcount: A:0.45, C:0.02, G:0.09, T:0.45
Consensus pattern (27 bp):
TGAAAATTCAATATTTTATAATTAAAG
Found at i:26428878 original size:28 final size:29
Alignment explanation
Indices: 26428765--26428880 Score: 105
Period size: 28 Copynumber: 4.1 Consensus size: 29
26428755 TGAGCATGAC
* * * *
26428765 TATAAATGTGATTTGCGCCTAGT-GGCCA
1 TATAAATATGAATTGGGCCTAATGGGCCA
* * **
26428793 TATGAATGTGTTTTGGGCCTAATGGGCCA
1 TATAAATATGAATTGGGCCTAATGGGCCA
*
26428822 CATAAATATGAA-TGGGCCTAATGGGCCA
1 TATAAATATGAATTGGGCCTAATGGGCCA
*
26428850 TATAAA-A-GAGATTGGGCCTAGTGGGCCA
1 TATAAATATGA-ATTGGGCCTAATGGGCCA
26428878 TAT
1 TAT
26428881 CATGTATGTA
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
26 2 0.03
27 2 0.03
28 58 0.78
29 12 0.16
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (29 bp):
TATAAATATGAATTGGGCCTAATGGGCCA
Found at i:26433045 original size:56 final size:56
Alignment explanation
Indices: 26432967--26433087 Score: 224
Period size: 56 Copynumber: 2.2 Consensus size: 56
26432957 TTTGTGTGCA
26432967 AGTAAGACCACATTTTATACGTTGGCATCGATATGTGACTTCGATATATGTGTGTG
1 AGTAAGACCACATTTTATACGTTGGCATCGATATGTGACTTCGATATATGTGTGTG
**
26433023 AGTAAGACCATGTTTTATACGTTGGCATCGATATGTGACTTCGATATATGTGTGTG
1 AGTAAGACCACATTTTATACGTTGGCATCGATATGTGACTTCGATATATGTGTGTG
26433079 AGTAAGACC
1 AGTAAGACC
26433088 CTATCTGGGA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (56 bp):
AGTAAGACCACATTTTATACGTTGGCATCGATATGTGACTTCGATATATGTGTGTG
Found at i:26433109 original size:56 final size:56
Alignment explanation
Indices: 26432983--26433116 Score: 173
Period size: 56 Copynumber: 2.4 Consensus size: 56
26432973 ACCACATTTT
* * ***
26432983 ATACGTTGGCATCGATATGTGACTTCGATATATGTGTGTGAGTAAGACCATGTTTT
1 ATACGTTGGAATCGATATGTGACTTCGATATATGTGTGTGAGTAAGACCATCTGGG
*
26433039 ATACGTTGGCATCGATATGTGACTTCGATATATGTGTGTGAGTAAGACCCTATCTGGG
1 ATACGTTGGAATCGATATGTGACTTCGATATATGTGTGTGAGTAAGA-CC-ATCTGGG
*
26433097 ATA-G-TGGAATCGATTTGTGA
1 ATACGTTGGAATCGATATGTGA
26433117 TAACATGTAA
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
56 61 0.87
57 3 0.04
58 6 0.09
ACGTcount: A:0.25, C:0.13, G:0.27, T:0.35
Consensus pattern (56 bp):
ATACGTTGGAATCGATATGTGACTTCGATATATGTGTGTGAGTAAGACCATCTGGG
Found at i:26435189 original size:27 final size:27
Alignment explanation
Indices: 26435139--26435516 Score: 306
Period size: 27 Copynumber: 14.1 Consensus size: 27
26435129 CGTTAAGACA
* *
26435139 CTCGGTTTGTAAAATTATCGAAATACC
1 CTCGATTTGTAAAATTACCGAAATACC
* * *
26435166 CTCAAATTGTAAAATTACCAAAATACC
1 CTCGATTTGTAAAATTACCGAAATACC
* *
26435193 CTCGATTTGTAAAATTATCGAAAAACC
1 CTCGATTTGTAAAATTACCGAAATACC
* **
26435220 CCCGGA-TTGTAAAATTAATGAAATACTC
1 CTC-GATTTGTAAAATTACCGAAATAC-C
* **
26435248 C-CGATTTTTAAAATTATTGAAATACC
1 CTCGATTTGTAAAATTACCGAAATACC
* * *
26435274 CTCGAATTGTAAAATTATCGAAACACC
1 CTCGATTTGTAAAATTACCGAAATACC
* * **
26435301 CCCAATTTGTAAAATTATAGAAATACC
1 CTCGATTTGTAAAATTACCGAAATACC
* * * *
26435328 CCCGATTTGTAAAATTATCAAAATACG
1 CTCGATTTGTAAAATTACCGAAATACC
***
26435355 AGGGATTT-TAAAATTACCGAAATACC
1 CTCGATTTGTAAAATTACCGAAATACC
*
26435381 C-C-AGTTTGTAAAATTATCGAAATACC
1 CTCGA-TTTGTAAAATTACCGAAATACC
* *
26435407 CTCAAATTT-TAAAATTACCAAAATACC
1 CTC-GATTTGTAAAATTACCGAAATACC
* * *
26435434 CCCAATTTGTAAAATTACTGAAATACC
1 CTCGATTTGTAAAATTACCGAAATACC
*
26435461 AC-CGATTTGTAAAATTACTGAAATACC
1 -CTCGATTTGTAAAATTACCGAAATACC
* *
26435488 CTTG--TAGTACAAATTTACCGAAATACC
1 CTCGATTTGTA-AAA-TTACCGAAATACC
26435515 CT
1 CT
26435517 ATAGGGTAAA
Statistics
Matches: 290, Mismatches: 47, Indels: 28
0.79 0.13 0.08
Matches are distributed among these distances:
24 1 0.00
25 7 0.02
26 46 0.16
27 227 0.78
28 8 0.03
29 1 0.00
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.30
Consensus pattern (27 bp):
CTCGATTTGTAAAATTACCGAAATACC
Found at i:26435489 original size:81 final size:81
Alignment explanation
Indices: 26435144--26435489 Score: 350
Period size: 81 Copynumber: 4.3 Consensus size: 81
26435134 AGACACTCGG
* * *
26435144 TTTGTAAAATTATCGAAATACCCTCAAATTGTAAAATTACCAAAATACCCTCGATTTGTAAAATT
1 TTTGTAAAATTATCGAAATACCCTCAAATTTTAAAATTACCAAAATACCCCCAATTTGTAAAATT
*
26435209 ATCGAAAAACCCCCGGA
66 ATCGAAATACCCCC-GA
* * *** *
26435226 -TTGTAAAATTAAT-GAAATACTCC-CGATTTTTAAAATTATTGAAATACCCTCGAA-TTGTAAA
1 TTTGTAAAATT-ATCGAAATAC-CCTCAAATTTTAAAATTACCAAAATACCC-CCAATTTGTAAA
* *
26435287 ATTATCGAAACACCCCCAA
63 ATTATCGAAATACCCCCGA
* ** * *****
26435306 TTTGTAAAATTATAGAAATACCC-CCGATTTGTAAAATTATCAAAATACGAGGGATTT-TAAAAT
1 TTTGTAAAATTATCGAAATACCCTCAAATTT-TAAAATTACCAAAATACCCCCAATTTGTAAAAT
* *
26435369 TACCGAAATACCCCAG-
65 TATCGAAATACCCCCGA
26435385 TTTGTAAAATTATCGAAATACCCTCAAATTTTAAAATTACCAAAATACCCCCAATTTGTAAAATT
1 TTTGTAAAATTATCGAAATACCCTCAAATTTTAAAATTACCAAAATACCCCCAATTTGTAAAATT
*
26435450 A-CTGAAATACCACCGA
66 ATC-GAAATACCCCCGA
26435466 TTTGTAAAATTA-CTGAAATACCCT
1 TTTGTAAAATTATC-GAAATACCCT
26435490 TGTAGTACAA
Statistics
Matches: 217, Mismatches: 35, Indels: 25
0.78 0.13 0.09
Matches are distributed among these distances:
79 43 0.20
80 53 0.24
81 116 0.53
82 5 0.02
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (81 bp):
TTTGTAAAATTATCGAAATACCCTCAAATTTTAAAATTACCAAAATACCCCCAATTTGTAAAATT
ATCGAAATACCCCCGA
Found at i:26438041 original size:27 final size:27
Alignment explanation
Indices: 26438003--26438079 Score: 91
Period size: 27 Copynumber: 2.9 Consensus size: 27
26437993 CAAATTGATG
* *
26438003 AAATGATTGTTATAGCCCTATGAAGTA
1 AAATGACTGTTATAACCCTATGAAGTA
* *
26438030 AAATGACTGTTATAACCCTCTGAGGTA
1 AAATGACTGTTATAACCCTATGAAGTA
** *
26438057 AAATGACTAATATATCCCTATGA
1 AAATGACTGTTATAACCCTATGA
26438080 TATGTATAAC
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.31
Consensus pattern (27 bp):
AAATGACTGTTATAACCCTATGAAGTA
Found at i:26439630 original size:43 final size:43
Alignment explanation
Indices: 26439516--26439637 Score: 140
Period size: 43 Copynumber: 2.8 Consensus size: 43
26439506 TGAATCATAT
* * * * **
26439516 ATCGATGCTAATGTCCCAGACATGGTC-TGACATGTAATCACTT
1 ATCGATGCCAATGTCCCAGACATGGTCTTG-CACGAAACCACGA
*
26439559 ATCGATGCCAATGTCCCAGACAGGGTCTTGCACGAAACCACAGA
1 ATCGATGCCAATGTCCCAGACATGGTCTTGCACGAAACCAC-GA
*
26439603 AT-GATGCCAATGTCCCAGACATGGTCTTACACGAA
1 ATCGATGCCAATGTCCCAGACATGGTCTTGCACGAA
26439638 TCATGTACTA
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
43 64 0.94
44 4 0.06
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.23
Consensus pattern (43 bp):
ATCGATGCCAATGTCCCAGACATGGTCTTGCACGAAACCACGA
Found at i:26446945 original size:30 final size:30
Alignment explanation
Indices: 26446899--26446961 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 30
26446889 ACAAATCATC
26446899 AAATACCTAATTCAATTCAGCAATATGAATAT
1 AAATACCTAATTCAATTCAGCAATA-G-ATAT
*
26446931 AAATA-CTAA-TCAATTCGGCAATAGATAT
1 AAATACCTAATTCAATTCAGCAATAGATAT
26446959 AAA
1 AAA
26446962 CATATATAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
28 7 0.23
29 1 0.03
30 13 0.43
31 4 0.13
32 5 0.17
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.29
Consensus pattern (30 bp):
AAATACCTAATTCAATTCAGCAATAGATAT
Found at i:26450382 original size:27 final size:28
Alignment explanation
Indices: 26450322--26450384 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 28
26450312 ATTTCTCATG
** *
26450322 TCCTGGTGAACTTACCTTTTGTTTAATA
1 TCCTGGTGAACTTACCTCATATTTAATA
* *
26450350 TTCTGGTGAACTTA-CTCATATTTACTA
1 TCCTGGTGAACTTACCTCATATTTAATA
26450377 TCCTGGTG
1 TCCTGGTG
26450385 GACTATCTTT
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
27 16 0.55
28 13 0.45
ACGTcount: A:0.21, C:0.19, G:0.16, T:0.44
Consensus pattern (28 bp):
TCCTGGTGAACTTACCTCATATTTAATA
Found at i:26450447 original size:33 final size:33
Alignment explanation
Indices: 26450367--26450439 Score: 110
Period size: 33 Copynumber: 2.2 Consensus size: 33
26450357 GAACTTACTC
** *
26450367 ATATTTACTATCCTGGTGGACTATCTTTTTTCT
1 ATATTTACTATCCCAGTGGACTATCTTTGTTCT
*
26450400 ATGTTTACTATCCCAGTGGACTATCTTTGTTCT
1 ATATTTACTATCCCAGTGGACTATCTTTGTTCT
26450433 ATATTTA
1 ATATTTA
26450440 TTGTCCCAAC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.21, C:0.18, G:0.12, T:0.49
Consensus pattern (33 bp):
ATATTTACTATCCCAGTGGACTATCTTTGTTCT
Found at i:26461262 original size:47 final size:47
Alignment explanation
Indices: 26461100--26461618 Score: 789
Period size: 47 Copynumber: 11.1 Consensus size: 47
26461090 GAAATGATAG
*
26461100 TAAGGCCTAAT-G-CGATGTGATGAATGTGAAAGTG--TATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
26461143 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
26461190 TAA-GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
26461236 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA--TATA--TGTGA
*
26461287 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
26461334 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
26461381 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
26461428 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
26461475 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
26461522 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * * *
26461568 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
26461615 TAAG
1 TAAG
26461619 TCCCGAAGGG
Statistics
Matches: 446, Mismatches: 20, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
43 11 0.02
44 1 0.00
45 22 0.05
46 85 0.19
47 278 0.62
49 6 0.01
51 43 0.10
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:26461792 original size:36 final size:37
Alignment explanation
Indices: 26461737--26461814 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
26461727 CCGAGCTCTA
* *
26461737 AAGACCCGATGACTACGTGTGG-GATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
26461773 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
26461810 AAGAC
1 AAGAC
26461815 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:26463704 original size:43 final size:43
Alignment explanation
Indices: 26463657--26463759 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
26463647 TTGGTTTTCA
26463657 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
26463700 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
26463743 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
26463760 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:26463776 original size:29 final size:29
Alignment explanation
Indices: 26463741--26463814 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
26463731 GTTGTGAGAT
* *
26463741 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
26463770 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
26463799 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
26463815 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:26467781 original size:47 final size:47
Alignment explanation
Indices: 26467610--26468121 Score: 781
Period size: 47 Copynumber: 11.1 Consensus size: 47
26467600 GAAATGATAG
* *
26467610 TAAGGCCAAATGGTCGATGTGATGAATGTGAAAGTG--TATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
26467655 TAAGGCC-AATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
26467701 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
26467747 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
26467794 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
26467839 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
26467886 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA-GTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
26467932 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
26467979 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
26468026 TAAGGCCTAATGGCCGATGTG-T-AATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
26468071 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
26468118 TAAG
1 TAAG
26468122 TCCCGAAGGG
Statistics
Matches: 438, Mismatches: 20, Indels: 16
0.92 0.04 0.03
Matches are distributed among these distances:
44 27 0.06
45 89 0.20
46 108 0.25
47 214 0.49
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:26467861 original size:22 final size:22
Alignment explanation
Indices: 26467789--26467861 Score: 58
Period size: 22 Copynumber: 3.3 Consensus size: 22
26467779 AGTGTATATG
26467789 TGTGATAAGGCCTAATAGCCGA
1 TGTGATAAGGCCTAATAGCCGA
* *** ***
26467811 TGTGATGAATGTGAAAGT-GTATA
1 TGTGAT-AAGGCCTAA-TAGCCGA
26467834 TGTGATAAGGCCTAATAGCCGA
1 TGTGATAAGGCCTAATAGCCGA
26467856 TGTGAT
1 TGTGAT
26467862 GAATGTGAAA
Statistics
Matches: 34, Mismatches: 14, Indels: 6
0.63 0.26 0.11
Matches are distributed among these distances:
21 1 0.03
22 19 0.56
23 13 0.38
24 1 0.03
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.29
Consensus pattern (22 bp):
TGTGATAAGGCCTAATAGCCGA
Found at i:26467934 original size:185 final size:184
Alignment explanation
Indices: 26467610--26468121 Score: 778
Period size: 185 Copynumber: 2.8 Consensus size: 184
26467600 GAAATGATAG
* *
26467610 TAAGGCCAAATGGTCGATGTGATGAATGTGAAAGTGTATATGTGATAAGGCC-AATGGCCGATGT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGATAAGGCCTAATGGCCGATGT
*
26467674 GATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTAT
66 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTAT
* * * *
26467739 ATGTGTGATAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
131 AT-AGTGATAAGGCCAAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
* *
26467794 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGATAAGGCCTAATAGCCGATGT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGATAAGGCCTAATGGCCGATGT
26467859 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
66 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTA
*
26467924 TATAGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
130 TATAGTGATAAGGCCAAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
26467979 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGATAAGGCCTAATGGCCGAT
* * * * * * *
26468044 GTG-T-AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
64 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTG
* *
26468107 CATAAATGTGATAAG
128 TATATA-GTGATAAG
26468122 TCCCGAAGGG
Statistics
Matches: 301, Mismatches: 22, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
184 49 0.16
185 185 0.61
186 38 0.13
187 29 0.10
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (184 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGATAAGGCCTAATGGCCGATGT
GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTAT
ATAGTGATAAGGCCAAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
Found at i:26468013 original size:232 final size:229
Alignment explanation
Indices: 26467610--26468121 Score: 778
Period size: 232 Copynumber: 2.2 Consensus size: 229
26467600 GAAATGATAG
* *
26467610 TAAGGCCAAATGGTCGATGTGATGAATGTGAAAGTG-TATATGTGATAAGGCCAATGGCCGATGT
1 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGATATATGTGATAAGGCCAATAGCCGATGT
*
26467674 GATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTAT
66 GATGAATGTGAAAGTGTATATGAGTGATAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTAT
* * *
26467739 ATGTGTGATAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAA
131 ATATGTAATAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
26467804 TAGCCGATGTGATGAATGTGAAAGTG-TATATGTGA
196 TAGCCGATGTG-T-AATGTGAAAGTGATATATGTGA
* *
26467839 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTG-ATATATGTGATAAGGCC-AATAGCCGAT
26467904 GTGATGAATGTGAAAGTGTATAT-AGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
64 GTGATGAATGTGAAAGTGTATATGAGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTG
*
26467968 TATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
128 TATATATGTAATAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
26468033 TAATGGCCGATGTGTAATGTGAAAGTGTATATATGTGA
193 TAATAGCCGATGTGTAATGTGAAAGTG-ATATATGTGA
* * * * * * * *
26468071 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTG-ATATATGTGATAAG
26468122 TCCCGAAGGG
Statistics
Matches: 257, Mismatches: 20, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
229 33 0.13
230 12 0.05
231 32 0.12
232 180 0.70
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (229 bp):
TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGATATATGTGATAAGGCCAATAGCCGATGT
GATGAATGTGAAAGTGTATATGAGTGATAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTAT
ATATGTAATAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
TAGCCGATGTGTAATGTGAAAGTGATATATGTGA
Found at i:26468296 original size:37 final size:37
Alignment explanation
Indices: 26468240--26468318 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
26468230 CCGAGCTCTA
* * *
26468240 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
26468277 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
26468314 AAGAC
1 AAGAC
26468319 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:26471089 original size:40 final size:40
Alignment explanation
Indices: 26471010--26471177 Score: 232
Period size: 40 Copynumber: 4.2 Consensus size: 40
26471000 CGGATGATAA
* * *
26471010 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
26471050 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
* *
26471090 CCGGGCTAAGACTCGAAGGCATTTGTGCGAGTTGATATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
26471130 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
26471170 CC-GGCTAA
1 CCGGGCTAA
26471178 TTTCTGAAGA
Statistics
Matches: 111, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 8 0.07
40 101 0.91
41 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:26471456 original size:22 final size:22
Alignment explanation
Indices: 26471414--26471457 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
26471404 AGAATGTGCA
* *
26471414 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
26471436 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
26471458 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:26473493 original size:41 final size:41
Alignment explanation
Indices: 26473435--26473517 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
26473425 TAGATCGGGA
26473435 TTGTACCGCTATCTAGGACTCTTCGTGGGCAGAATATCACG
1 TTGTACCGCTATCTAGGACTCTTCGTGGGCAGAATATCACG
* *
26473476 TTGTACTGCTATTTAGGACTCTTCGTGGGCAGAATATCACG
1 TTGTACCGCTATCTAGGACTCTTCGTGGGCAGAATATCACG
26473517 T
1 T
26473518 GGGTAAGTAC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.33
Consensus pattern (41 bp):
TTGTACCGCTATCTAGGACTCTTCGTGGGCAGAATATCACG
Found at i:26477735 original size:27 final size:26
Alignment explanation
Indices: 26477691--26477741 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
26477681 CTCGCTGCAA
*
26477691 TCTGGTGGCCTCGCCACATATATCTAT
1 TCTGGTGACCTCGCCACA-ATATCTAT
* *
26477718 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
26477742 GGTAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTAT
Found at i:26484631 original size:42 final size:42
Alignment explanation
Indices: 26484564--26484648 Score: 143
Period size: 42 Copynumber: 2.0 Consensus size: 42
26484554 CAACTAAGGA
26484564 TCTTAAAGGCTAGCACAGTTAGGCATCAAGACTAGTCTATAT
1 TCTTAAAGGCTAGCACAGTTAGGCATCAAGACTAGTCTATAT
* * *
26484606 TCTTAAAGGCTAGCATAGTTGGGCATCGAGACTAGTCTATAT
1 TCTTAAAGGCTAGCACAGTTAGGCATCAAGACTAGTCTATAT
26484648 T
1 T
26484649 TGGCAGAAAG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.31
Consensus pattern (42 bp):
TCTTAAAGGCTAGCACAGTTAGGCATCAAGACTAGTCTATAT
Found at i:26485514 original size:27 final size:26
Alignment explanation
Indices: 26485470--26485521 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
26485460 CTCGCTGCAA
*
26485470 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
26485497 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
26485522 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:26489761 original size:46 final size:47
Alignment explanation
Indices: 26489581--26489761 Score: 149
Period size: 46 Copynumber: 3.9 Consensus size: 47
26489571 GTTGTTGTTC
* * * *
26489581 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-A-TCATGAGG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCTACGAGACGT-AGA
* * * * *
26489627 GCCAGTGTAAGACCATGTCTTGGACAAGGAATCAGC-ATTGAGACG-AGA
1 GCTAGTGTAAGA-CATGTCTGGGAC-ATGCATCAGCTA-CGAGACGTAGA
* * **
26489675 GCAAGTGTAAGACATGTTTGGGACATGCATTGGCCT-CGAGACGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAG-CTACGAGACGTAGA
*
26489721 GCTAGTGTAAGACTTGTCTGGGACATGCATCAGCTACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCTACGAGA
26489762 TGATAGTCAG
Statistics
Matches: 105, Mismatches: 21, Indels: 18
0.73 0.15 0.12
Matches are distributed among these distances:
45 2 0.02
46 56 0.53
47 24 0.23
48 21 0.20
49 1 0.01
50 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.22
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCTACGAGACGTAGA
Found at i:26496724 original size:47 final size:43
Alignment explanation
Indices: 26496613--26496740 Score: 148
Period size: 47 Copynumber: 2.8 Consensus size: 43
26496603 GTTGATGTTG
* *
26496613 GCTAGTGTAAGACATGTCTAGGACATGCATCTGGCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATC-GG--CATTACGAGA
* *
26496659 GCCAGTGTAAGACCATGTCTGGGATATGGCATCGGCATTGAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATT---ACGAGA
26496707 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC
26496741 CCAGAGAGGA
Statistics
Matches: 71, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
45 4 0.06
46 19 0.27
47 27 0.38
48 21 0.30
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (43 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTACGAGA
Found at i:26496855 original size:47 final size:48
Alignment explanation
Indices: 26496763--26496892 Score: 169
Period size: 47 Copynumber: 2.8 Consensus size: 48
26496753 GCCACGACAC
* * *
26496763 GTAAGCCAGTGTAAGA-CATGCCTGGGACAT-GCACCAGCTACGAGAT
1 GTAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACTACGAGAT
* * *
26496809 G-ATAGTCAGTGTAAGACCATGTTTGGGACATGGCATCAACT-TGAGAT
1 GTA-AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACTACGAGAT
26496856 GTAAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GTAAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
26496893 GACACCTTAC
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
45 1 0.01
46 13 0.18
47 50 0.69
48 8 0.11
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (48 bp):
GTAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACTACGAGAT
Found at i:26507977 original size:23 final size:23
Alignment explanation
Indices: 26507941--26508116 Score: 205
Period size: 23 Copynumber: 7.7 Consensus size: 23
26507931 GGAATCTATA
26507941 GGCTACAATACAGTGGTAGCTTC
1 GGCTACAATACAGTGGTAGCTTC
* * *
26507964 GGCTGC-ATCTCAGTGGTAGCTTT
1 GGCTACAAT-ACAGTGGTAGCTTC
26507987 GGCTACAATACAGTGGTAGCTTC
1 GGCTACAATACAGTGGTAGCTTC
*
26508010 -GCTTAC-ATCTCAGTGGTAGCTTC
1 GGC-TACAAT-ACAGTGGTAGCTTC
* *
26508033 GGCTACAATACAATGGTAGCTTT
1 GGCTACAATACAGTGGTAGCTTC
26508056 GGCTACAATACAGTGGTAGCTTC
1 GGCTACAATACAGTGGTAGCTTC
** *
26508079 GGCTACGTTACAGTGATAGCTTC
1 GGCTACAATACAGTGGTAGCTTC
* *
26508102 GGCTATATTACAGTG
1 GGCTACAATACAGTG
26508117 TGGCACTCTG
Statistics
Matches: 130, Mismatches: 17, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
22 6 0.05
23 118 0.91
24 6 0.05
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (23 bp):
GGCTACAATACAGTGGTAGCTTC
Found at i:26508062 original size:69 final size:69
Alignment explanation
Indices: 26507941--26508106 Score: 230
Period size: 69 Copynumber: 2.4 Consensus size: 69
26507931 GGAATCTATA
* * * *
26507941 GGCTACAATACAGTGGTAGCTTCGGCTGCATCTCAGTGGTAGCTTTGGCTACAATACAGTGGTAG
1 GGCTACATTACAGTGGTAGCTTCGGCTACATCACAATGGTAGCTTTGGCTACAATACAGTGGTAG
26508006 CTTC
66 CTTC
26508010 -GCTTACATCT-CAGTGGTAGCTTCGGCTACAAT-ACAATGGTAGCTTTGGCTACAATACAGTGG
1 GGC-TACAT-TACAGTGGTAGCTTCGGCTAC-ATCACAATGGTAGCTTTGGCTACAATACAGTGG
26508072 TAGCTTC
63 TAGCTTC
* *
26508079 GGCTACGTTACAGTGATAGCTTCGGCTA
1 GGCTACATTACAGTGGTAGCTTCGGCTA
26508107 TATTACAGTG
Statistics
Matches: 86, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
68 3 0.03
69 78 0.91
70 5 0.06
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.30
Consensus pattern (69 bp):
GGCTACATTACAGTGGTAGCTTCGGCTACATCACAATGGTAGCTTTGGCTACAATACAGTGGTAG
CTTC
Found at i:26508116 original size:46 final size:46
Alignment explanation
Indices: 26507941--26508106 Score: 228
Period size: 46 Copynumber: 3.6 Consensus size: 46
26507931 GGAATCTATA
* *
26507941 GGCTACAATACAGTGGTAGCTTCGGCTGCATCTCAGTGGTAGCTTT
1 GGCTACAATACAGTGGTAGCTTCGGCTACATCTCAGTGGTAGCTTC
26507987 GGCTACAATACAGTGGTAGCTTC-GCTTACATCTCAGTGGTAGCTTC
1 GGCTACAATACAGTGGTAGCTTCGGC-TACATCTCAGTGGTAGCTTC
* * *
26508033 GGCTACAATACAATGGTAGCTTTGGCTACAAT-ACAGTGGTAGCTTC
1 GGCTACAATACAGTGGTAGCTTCGGCTAC-ATCTCAGTGGTAGCTTC
** *
26508079 GGCTACGTTACAGTGATAGCTTCGGCTA
1 GGCTACAATACAGTGGTAGCTTCGGCTA
26508107 TATTACAGTG
Statistics
Matches: 107, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
45 2 0.02
46 101 0.94
47 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.30
Consensus pattern (46 bp):
GGCTACAATACAGTGGTAGCTTCGGCTACATCTCAGTGGTAGCTTC
Found at i:26510290 original size:27 final size:28
Alignment explanation
Indices: 26510161--26510291 Score: 180
Period size: 27 Copynumber: 4.8 Consensus size: 28
26510151 ATTATCAAAG
26510161 TACCCTCGATTTATAGAATTA-TCGTTT
1 TACCCTCGATTTATAGAATTACTCGTTT
*
26510188 TACCCTCGATTTAAAGAATTA-TCGTTT
1 TACCCTCGATTTATAGAATTACTCGTTT
*
26510215 TACCCTCGATTTATAGAATTACT-ATTT
1 TACCCTCGATTTATAGAATTACTCGTTT
* * *
26510242 TACCCTTGATTTACAGAGTTACT-GTTT
1 TACCCTCGATTTATAGAATTACTCGTTT
*
26510269 TACCCTCGATTTATAAAATTACT
1 TACCCTCGATTTATAGAATTACT
26510292 AAAATACCCT
Statistics
Matches: 92, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
27 91 0.99
28 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.10, T:0.43
Consensus pattern (28 bp):
TACCCTCGATTTATAGAATTACTCGTTT
Found at i:26510299 original size:27 final size:27
Alignment explanation
Indices: 26510269--26510512 Score: 210
Period size: 27 Copynumber: 9.1 Consensus size: 27
26510259 GTTACTGTTT
*
26510269 TACCCTCGATTTATAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * *
26510296 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
*
26510323 TACCCTCG-CTTAGTAAAATTACCAAAA
1 TACCCTCGATTTA-TAAAATTACCAAAA
* * * * *
26510350 TACCCTAG-TCTGTAAAATTGCTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * *
26510376 TACCC-CTAGTTTGTAAAATTACCGAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
* *
26510403 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
26510430 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
* * * *
26510457 TACCACT-GGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTTATAAAATTACCAAAA
* *
26510484 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
26510511 TA
1 TA
26510513 GCCATGATGT
Statistics
Matches: 179, Mismatches: 30, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
26 24 0.13
27 152 0.85
28 3 0.02
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAAAA
Found at i:26510300 original size:54 final size:54
Alignment explanation
Indices: 26510188--26510316 Score: 161
Period size: 54 Copynumber: 2.4 Consensus size: 54
26510178 ATTATCGTTT
* * * ***
26510188 TACCCTCGATTTAAAGAATTATCGTTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTTGATTTACAGAATTATCGTTTTACCCTCGATTTATAAAATTACTAAAA
*
26510242 TACCCTTGATTTACAGAGTTA-CTGTTTTACCCTCGATTTATAAAATTACTAAAA
1 TACCCTTGATTTACAGAATTATC-GTTTTACCCTCGATTTATAAAATTACTAAAA
* *
26510296 TACCCTTGGTTTACAAAATTA
1 TACCCTTGATTTACAGAATTA
26510317 CCAAAATACC
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
53 1 0.02
54 63 0.98
ACGTcount: A:0.32, C:0.19, G:0.09, T:0.40
Consensus pattern (54 bp):
TACCCTTGATTTACAGAATTATCGTTTTACCCTCGATTTATAAAATTACTAAAA
Found at i:26510327 original size:54 final size:54
Alignment explanation
Indices: 26510269--26510628 Score: 237
Period size: 54 Copynumber: 6.6 Consensus size: 54
26510259 GTTACTGTTT
*
26510269 TACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
* * * ** * *
26510323 TACCCTCG-CTTAGTAAAATTACCAAAATACCC-TAGTCTGTAAAATTGCTAAAA
1 TACCCTCGATTTA-TAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
* * * *** **
26510376 TACCC-CTAGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
* * *** *
26510430 TACCC-CTAGTTTGTAAAATTACCAAAATACCAC-TGGTTTGTGAAATTACCGAAA
1 TACCCTCGA-TTTATAAAATTACCAAAATACC-CTTGGTTTACAAAATTACCAAAA
* * * * * * *
26510484 TACCCTCAATTTGTAAAATTACCAAAATAGCCATGATGTACAAAGTTA-CAGAAA
1 TACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTACAAAATTACCA-AAA
* * *** * *
26510538 TACCCTTGACTTTCTAAAAATTATGGAAATACCATTGGTTTACAAAATTACTAAAA
1 TACCCTCGA-TTTAT-AAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
* * * * * *
26510594 TACCCTTGGTTTGTAGATTTACCAAAACACCCTTG
1 TACCCTCGATTTATAAAATTACCAAAATACCCTTG
26510629 TAGGATGAAA
Statistics
Matches: 241, Mismatches: 54, Indels: 22
0.76 0.17 0.07
Matches are distributed among these distances:
52 1 0.00
53 43 0.18
54 149 0.62
55 11 0.05
56 36 0.15
57 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
Found at i:26510354 original size:81 final size:80
Alignment explanation
Indices: 26510269--26510512 Score: 312
Period size: 81 Copynumber: 3.0 Consensus size: 80
26510259 GTTACTGTTT
* ** * **
26510269 TACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGCTT
1 TACCCTCGATTTGTAAAATTACTAAAATACCC-TGGTTTGTAAAATTACCGAAATACCCTCAATT
*
26510334 AGTAAAATTACCAAAA
65 TGTAAAATTACCAAAA
* * * *
26510350 TACCCTAG-TCTGTAAAATTGCTAAAATACCCCTAGTTTGTAAAATTACCGAAATACCCTCAATT
1 TACCCTCGATTTGTAAAATTACTAAAATA-CCCTGGTTTGTAAAATTACCGAAATACCCTCAATT
26510414 TGTAAAATTACCAAAA
65 TGTAAAATTACCAAAA
* * *
26510430 TACCC-CTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAAT
1 TACCCTCGA-TTTGTAAAATTACTAAAATACC-CTGGTTTGTAAAATTACCGAAATACCCTCAAT
26510494 TTGTAAAATTACCAAAA
64 TTGTAAAATTACCAAAA
26510511 TA
1 TA
26510513 GCCATGATGT
Statistics
Matches: 141, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
80 65 0.46
81 76 0.54
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (80 bp):
TACCCTCGATTTGTAAAATTACTAAAATACCCTGGTTTGTAAAATTACCGAAATACCCTCAATTT
GTAAAATTACCAAAA
Found at i:26510682 original size:27 final size:26
Alignment explanation
Indices: 26510650--26510745 Score: 104
Period size: 27 Copynumber: 3.5 Consensus size: 26
26510640 GACTAAAATA
*
26510650 CCCCTATTAGGTAAAAAGACCGTAAAG
1 CCCCTA-TAGGTAAAGAGACCGTAAAG
*
26510677 CCCCTATAGGTTAAAGAGACCATAAAG
1 CCCCTATAGG-TAAAGAGACCGTAAAG
*
26510704 CCCCTATAGGGTAAAGTGACCGTAATA-
1 CCCCTATA-GGTAAAGAGACCGTAA-AG
*
26510731 CCCCTGTATGGTAAA
1 CCCCTATA-GGTAAA
26510746 ATGACGAATA
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
26 4 0.07
27 53 0.88
28 3 0.05
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.21
Consensus pattern (26 bp):
CCCCTATAGGTAAAGAGACCGTAAAG
Found at i:26514226 original size:30 final size:30
Alignment explanation
Indices: 26514192--26514252 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
26514182 TCCTTAACTC
26514192 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
* * * *
26514222 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
26514252 A
1 A
26514253 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCT
Found at i:26515369 original size:42 final size:42
Alignment explanation
Indices: 26515310--26515443 Score: 205
Period size: 42 Copynumber: 3.2 Consensus size: 42
26515300 TAGTGTCCCC
* ** * *
26515310 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACACGTGATATTG
*
26515352 AAATGGGCTTGCATACATCCATTGACATTACACGTGACATTG
1 AAATGGGCTTGCATACATCCATTGACATTACACGTGATATTG
*
26515394 AAATGGGCTTGCATACATCCATTAACATTACACGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACACGTGATATTG
26515436 AAATGGGC
1 AAATGGGC
26515444 CTAAAGGCCA
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 84 1.00
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACACGTGATATTG
Found at i:26515502 original size:31 final size:31
Alignment explanation
Indices: 26515467--26515543 Score: 111
Period size: 31 Copynumber: 2.5 Consensus size: 31
26515457 CATTTACAGT
26515467 AAAGGCTTCGACCCAATGATATGATTTATGA
1 AAAGGCTTCGACCCAATGATATGATTTATGA
* *
26515498 AAAGGCTTC-AGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGA-CCCAATGATATGATTTATGA
*
26515529 AAAGGCTTCGGCCCA
1 AAAGGCTTCGACCCA
26515544 GTAACCGTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
30 1 0.03
31 39 0.98
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGACCCAATGATATGATTTATGA
Found at i:26518488 original size:37 final size:37
Alignment explanation
Indices: 26518429--26518537 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
26518419 AGCTCAGACG
* *
26518429 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
26518466 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
26518503 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
26518538 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:26518741 original size:50 final size:48
Alignment explanation
Indices: 26518683--26518867 Score: 262
Period size: 48 Copynumber: 3.8 Consensus size: 48
26518673 GCACATCGCC
* *
26518683 TACATATTTCACACTAACCATTCGGCTTTACCAAATATACACATCTCACA
1 TACATATTTCACATTAACCATTCGGCTTTACCAAATATACATATCT--CA
** * * *
26518733 TTTATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAACCATTCGGCTTTACCAAATATACATATCTCA
* *
26518781 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAACCATTCGGCTTTACCAAATATACATATCTCA
*
26518829 TACATATTTCACATTAGCCATTCGGCTTTACCAAATATA
1 TACATATTTCACATTAACCATTCGGCTTTACCAAATATA
26518868 TGCATGTTCA
Statistics
Matches: 122, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
48 83 0.68
50 39 0.32
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAACCATTCGGCTTTACCAAATATACATATCTCA
Found at i:26518869 original size:98 final size:98
Alignment explanation
Indices: 26518665--26518872 Score: 278
Period size: 98 Copynumber: 2.1 Consensus size: 98
26518655 CGTTCGGCCA
* *
26518665 CAATATATGCACATCGCCTACATATTTCACACTAACCATTCGGCTTTACCAAATATACACATCTC
1 CAATATATGCATATCGCATACATATTTCACACTAACCATTCGGCTTTACCAAATATACACATCT-
**
26518730 ACATTTATATTTCACATTGACCATTCGGCTTTAC
65 ACATACATATTTCACATTGACCATTCGGCTTTAC
* * * * * *
26518764 C-ACATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT-
1 CAATATATGCATATCGCATACATATTTCACACTAACCATTCGGCTTTACCAAATATACACATCTA
26518827 CATACATATTTCACATT-AGCCATTCGGCTTTAC
66 CATACATATTTCACATTGA-CCATTCGGCTTTAC
26518860 CAAATATATGCAT
1 C-AATATATGCAT
26518873 GTTCATATTC
Statistics
Matches: 95, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
95 1 0.01
96 30 0.32
98 63 0.66
99 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.34
Consensus pattern (98 bp):
CAATATATGCATATCGCATACATATTTCACACTAACCATTCGGCTTTACCAAATATACACATCTA
CATACATATTTCACATTGACCATTCGGCTTTAC
Found at i:26527246 original size:40 final size:40
Alignment explanation
Indices: 26527164--26527383 Score: 218
Period size: 40 Copynumber: 5.5 Consensus size: 40
26527154 TATTCGAATG
* * *
26527164 ATATTCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
26527204 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
26527244 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
26527284 ATATCTGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* * * **
26527324 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAGTGGTT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
26527363 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGAT-CCGAAG
26527384 ATACTTGGGT
Statistics
Matches: 149, Mismatches: 25, Indels: 14
0.79 0.13 0.07
Matches are distributed among these distances:
37 1 0.01
38 12 0.08
39 16 0.11
40 117 0.79
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:26527304 original size:80 final size:78
Alignment explanation
Indices: 26527164--26527383 Score: 246
Period size: 80 Copynumber: 2.8 Consensus size: 78
26527154 TATTCGAATG
* * * * *
26527164 ATATTCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATAT-CGGGCTAAG-TCCCGAAGGC
* *
26527228 ATTTGTGCGAGTTG-CT
63 ATTTATGCGAG-TGACC
*
26527244 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCTGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATC-GGGCTAAGTCCCGAAGGCA
*
26527309 TTTATGCTAGTGACC
64 TTTATGCGAGTGACC
* * * * *
26527324 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTGGTTATATCCGGCTAAATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCGGGCTAAGTCCCGAAG
26527384 ATACTTGGGT
Statistics
Matches: 121, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
78 14 0.12
79 20 0.17
80 87 0.72
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (78 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCGGGCTAAGTCCCGAAGGCATT
TATGCGAGTGACC
Found at i:26537828 original size:21 final size:22
Alignment explanation
Indices: 26537804--26537844 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
26537794 TATAAATTTA
*
26537804 TCAAATCCAAACATA-AGTCAT
1 TCAAATACAAACATATAGTCAT
*
26537825 TCAAATACAATCATATAGTC
1 TCAAATACAAACATATAGTC
26537845 CCTGATACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.46, C:0.22, G:0.05, T:0.27
Consensus pattern (22 bp):
TCAAATACAAACATATAGTCAT
Found at i:26553928 original size:55 final size:55
Alignment explanation
Indices: 26553741--26553987 Score: 239
Period size: 55 Copynumber: 4.6 Consensus size: 55
26553731 ACACGGGTAC
* * * * *
26553741 CTTACCATTTCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-T-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
* * *
26553790 CTTACCATTGCCATGTCTTGACATGGTCTTACATAGTATCCTTGCCTTAT-G-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
* * *
26553843 CTCACCAATGTCC-TGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGAAA
1 CTTACCAATG-CCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAGAAA
* * *
26553898 CTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACC-T-TAGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
*
26553951 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATG
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATG
26553988 ACATCCTTAA
Statistics
Matches: 166, Mismatches: 19, Indels: 20
0.81 0.09 0.10
Matches are distributed among these distances:
49 36 0.22
50 1 0.01
52 2 0.01
53 48 0.29
54 15 0.09
55 62 0.37
56 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.35
Consensus pattern (55 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
Found at i:26556167 original size:24 final size:24
Alignment explanation
Indices: 26556135--26556181 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
26556125 TTATAATATG
* * *
26556135 AAAATGACCGTTTTGCCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
26556159 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
26556182 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (24 bp):
AAAATGACCATTATACCCCTAGGT
Found at i:26556248 original size:20 final size:20
Alignment explanation
Indices: 26556225--26556263 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
26556215 TAAACATGGT
26556225 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
26556245 ATGTATGATATGCATATGA
1 ATGTATGATATGCACATGA
26556264 TGTATTCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:26556342 original size:24 final size:24
Alignment explanation
Indices: 26556314--26556515 Score: 359
Period size: 24 Copynumber: 8.4 Consensus size: 24
26556304 GAGGAAGTGA
*
26556314 AAAAGGGCTTATGCCCCAGTGATT
1 AAAAGGGCTTATGCCCCAGTTATT
26556338 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
26556362 AAAAGGGCTTATGCCCCAGTGATT
1 AAAAGGGCTTATGCCCCAGTTATT
26556386 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
26556410 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
26556434 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
26556458 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
26556482 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
26556506 AAAAGAGGCT
1 AAAAG-GGCT
26556516 AGGCCTCTAG
Statistics
Matches: 171, Mismatches: 6, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
24 167 0.98
25 4 0.02
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:26568072 original size:53 final size:54
Alignment explanation
Indices: 26567959--26568197 Score: 224
Period size: 55 Copynumber: 4.5 Consensus size: 54
26567949 TTACCATTGA
* * * * *
26567959 CTTGTCATGGTCTTACTTGGTATCC-T---TT-TGAAGCTTACCATTGCCATGT
1 CTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAATGCCATGC
* * *
26568008 CTCGACATGGTCTTACATAGTATCCTTGCCTTATG-AACTCACCAATGCCATGC
1 CTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAATGCCATGC
* * * * *
26568061 CTTGGCATGGTCTTACGTGGGA-CCTTTGCCTTATAGAAACTTATCAATGCCATGT
1 CTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAACTTACCAATGCCATGC
* * * *
26568116 ATTGACATGGTCTTACATGATATCCTTACCTTA-GAAACCTTACCAATCACCATGC
1 CTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA-CTTACCAAT-GCCATGC
*
26568171 CTTGGCATGGTCTTACATGGTATCCTT
1 CTTGACATGGTCTTACATGGTATCCTT
26568198 AAACCCTAAT
Statistics
Matches: 151, Mismatches: 28, Indels: 16
0.77 0.14 0.08
Matches are distributed among these distances:
49 21 0.14
50 1 0.01
52 2 0.01
53 46 0.30
54 11 0.07
55 68 0.45
56 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (54 bp):
CTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAATGCCATGC
Found at i:26572314 original size:16 final size:16
Alignment explanation
Indices: 26572293--26572326 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
26572283 TTGGGCCCAT
26572293 TTGTACTGTTTGACTG
1 TTGTACTGTTTGACTG
26572309 TTGTACTGTTTGACTG
1 TTGTACTGTTTGACTG
26572325 TT
1 TT
26572327 AAGGTTGCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.12, C:0.12, G:0.24, T:0.53
Consensus pattern (16 bp):
TTGTACTGTTTGACTG
Found at i:26572438 original size:27 final size:27
Alignment explanation
Indices: 26572402--26572554 Score: 173
Period size: 27 Copynumber: 5.7 Consensus size: 27
26572392 CCAGATTGAT
*
26572402 AAATGACTATTTTTCCCTCATGAGGTA
1 AAATGACTATTTTGCCCTCATGAGGTA
* *
26572429 AAATGACTATTTTGCCCTTATGTGGTA
1 AAATGACTATTTTGCCCTCATGAGGTA
* * * *
26572456 AAATGATTGTTTTGCCCTTATGTGGTA
1 AAATGACTATTTTGCCCTCATGAGGTA
* *
26572483 AAATGACTGTTTTGCCCTCATGAGGGA
1 AAATGACTATTTTGCCCTCATGAGGTA
*
26572510 AAATGACTATTTTGCCCTTAT-ATGGTA
1 AAATGACTATTTTGCCCTCATGA-GGTA
* * *
26572537 AGATGATTGTTTTGCCCT
1 AAATGACTATTTTGCCCT
26572555 ATGTGATGTA
Statistics
Matches: 110, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 109 0.99
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (27 bp):
AAATGACTATTTTGCCCTCATGAGGTA
Found at i:26572488 original size:54 final size:54
Alignment explanation
Indices: 26572402--26572559 Score: 201
Period size: 54 Copynumber: 2.9 Consensus size: 54
26572392 CCAGATTGAT
* * * * *
26572402 AAATGACTATTTTTCCCTCATGAGGTAAAATGACTATTTTGCCCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTATGTGGGA
* * * *
26572456 AAATGATTGTTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTCATGAGGGA
1 AAATGACTATTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTATGTGGGA
* * *
26572510 AAATGACTATTTTGCCCTTATATGGTAAGATGATTGTTTTGCCC-TATGTG
1 AAATGACTATTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTATGTG
26572560 ATGTATATAT
Statistics
Matches: 88, Mismatches: 16, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
53 4 0.05
54 84 0.95
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.39
Consensus pattern (54 bp):
AAATGACTATTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTATGTGGGA
Found at i:26572537 original size:81 final size:80
Alignment explanation
Indices: 26572402--26572559 Score: 262
Period size: 81 Copynumber: 2.0 Consensus size: 80
26572392 CCAGATTGAT
* * *
26572402 AAATGACTATTTTTCCCTCATGAGGTAAAATGACTATTTTGCCCTTATGTGGTAAAATGATTGTT
1 AAATGACTATTTTGCCCTCATGAGGGAAAATGACTATTTTGCCCTTATATGGTAAAATGATTGTT
26572467 TTGCCCTTATGTGGTA
66 TTGCCC-TATGTGGTA
* *
26572483 AAATGACTGTTTTGCCCTCATGAGGGAAAATGACTATTTTGCCCTTATATGGTAAGATGATTGTT
1 AAATGACTATTTTGCCCTCATGAGGGAAAATGACTATTTTGCCCTTATATGGTAAAATGATTGTT
26572548 TTGCCCTATGTG
66 TTGCCCTATGTG
26572560 ATGTATATAT
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
80 6 0.08
81 66 0.92
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.39
Consensus pattern (80 bp):
AAATGACTATTTTGCCCTCATGAGGGAAAATGACTATTTTGCCCTTATATGGTAAAATGATTGTT
TTGCCCTATGTGGTA
Found at i:26572654 original size:24 final size:24
Alignment explanation
Indices: 26572626--26572673 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
26572616 GATACATGTA
26572626 TGATTCTATGATATGACATGACAT
1 TGATTCTATGATATGACATGACAT
26572650 TGATTCTATGATATGACATGACAT
1 TGATTCTATGATATGACATGACAT
26572674 GACCGTATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (24 bp):
TGATTCTATGATATGACATGACAT
Found at i:26581875 original size:32 final size:32
Alignment explanation
Indices: 26581839--26581900 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
26581829 CCGTATCTAG
*
26581839 ATAGGTTTGTAGTGGTATTTATTGATGATAAA
1 ATAGGTTTGTAGTGGTATTAATTGATGATAAA
26581871 ATAGGTTTGTAGTGGTATTAATTGATGATA
1 ATAGGTTTGTAGTGGTATTAATTGATGATA
26581901 TTCTGGTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.26, T:0.44
Consensus pattern (32 bp):
ATAGGTTTGTAGTGGTATTAATTGATGATAAA
Found at i:26585139 original size:21 final size:21
Alignment explanation
Indices: 26585115--26585154 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
26585105 TGCCTAGGAC
*
26585115 ATGAAGTGAATTAAATTGAGT
1 ATGAAATGAATTAAATTGAGT
*
26585136 ATGAAATGGATTAAATTGA
1 ATGAAATGAATTAAATTGA
26585155 TGTTAAATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.23, T:0.33
Consensus pattern (21 bp):
ATGAAATGAATTAAATTGAGT
Found at i:26585608 original size:24 final size:24
Alignment explanation
Indices: 26585574--26585624 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
26585564 ACAAACTCAA
*
26585574 CTCTTCATGAGCGTCCTGATATAGG
1 CTCTTCATGAGCGTCCTGACAT-GG
*
26585599 CTCTT-ATGAGCTTCCTGACATGG
1 CTCTTCATGAGCGTCCTGACATGG
26585622 CTC
1 CTC
26585625 GCTTGAACTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 5 0.21
24 14 0.58
25 5 0.21
ACGTcount: A:0.18, C:0.27, G:0.22, T:0.33
Consensus pattern (24 bp):
CTCTTCATGAGCGTCCTGACATGG
Found at i:26593276 original size:28 final size:28
Alignment explanation
Indices: 26593236--26593305 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
26593226 ATAGTAAGTC
*
26593236 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
26593264 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
26593292 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26593306 CAATCTCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:26601134 original size:28 final size:28
Alignment explanation
Indices: 26601094--26601163 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
26601084 ATAGTAAGTC
*
26601094 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
26601122 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
26601150 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26601164 CAATCTCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:26608923 original size:28 final size:28
Alignment explanation
Indices: 26608883--26608952 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
26608873 ATAGTAAGTC
*
26608883 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
26608911 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
26608939 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26608953 CAATCTCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:26614050 original size:37 final size:37
Alignment explanation
Indices: 26613991--26614085 Score: 154
Period size: 37 Copynumber: 2.6 Consensus size: 37
26613981 AGCTCAGACG
* *
26613991 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
26614028 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
26614065 TAATCTCCACACGTAGCCATC
1 AAATCTCCACACGTAGTCATC
26614086 CACACGTAGT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 54 1.00
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:26614089 original size:14 final size:14
Alignment explanation
Indices: 26614070--26614099 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
26614060 GGACATAATC
26614070 TCCACACGTAGCCA
1 TCCACACGTAGCCA
*
26614084 TCCACACGTAGTCA
1 TCCACACGTAGCCA
26614098 TC
1 TC
26614100 GGGTCTCACC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.27, C:0.40, G:0.13, T:0.20
Consensus pattern (14 bp):
TCCACACGTAGCCA
Found at i:26614111 original size:51 final size:51
Alignment explanation
Indices: 26614033--26614136 Score: 190
Period size: 51 Copynumber: 2.0 Consensus size: 51
26614023 GGACAAAATC
*
26614033 TCCACACGTAGTCATCGGGTCTTACCCGGACATAATCTCCACACGTAGCCA
1 TCCACACGTAGTCATCGGGTCTCACCCGGACATAATCTCCACACGTAGCCA
*
26614084 TCCACACGTAGTCATCGGGTCTCACCCGGACATAATCTCCACACGTAGTCA
1 TCCACACGTAGTCATCGGGTCTCACCCGGACATAATCTCCACACGTAGCCA
26614135 TC
1 TC
26614137 GGGTCTTACC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.25, C:0.36, G:0.17, T:0.22
Consensus pattern (51 bp):
TCCACACGTAGTCATCGGGTCTCACCCGGACATAATCTCCACACGTAGCCA
Found at i:26614134 original size:37 final size:37
Alignment explanation
Indices: 26614084--26614185 Score: 195
Period size: 37 Copynumber: 2.8 Consensus size: 37
26614074 CACGTAGCCA
*
26614084 TCCACACGTAGTCATCGGGTCTCACCCGGACATAATC
1 TCCACACGTAGTCATCGGGTCTTACCCGGACATAATC
26614121 TCCACACGTAGTCATCGGGTCTTACCCGGACATAATC
1 TCCACACGTAGTCATCGGGTCTTACCCGGACATAATC
26614158 TCCACACGTAGTCATCGGGTCTTACCCG
1 TCCACACGTAGTCATCGGGTCTTACCCG
26614186 TAATATATTT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.34, G:0.20, T:0.24
Consensus pattern (37 bp):
TCCACACGTAGTCATCGGGTCTTACCCGGACATAATC
Found at i:26614145 original size:88 final size:88
Alignment explanation
Indices: 26613996--26614173 Score: 311
Period size: 88 Copynumber: 2.0 Consensus size: 88
26613986 AGACGAAATC
* *
26613996 TCCACACGAAGTTATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 TCCACACGAAGTCATCGGGTCTCACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
26614061 GACATAATCTCCACACGTAGCCA
66 GACATAATCTCCACACGTAGCCA
* *
26614084 TCCACACGTAGTCATCGGGTCTCACCCGGACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 TCCACACGAAGTCATCGGGTCTCACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
26614149 GACATAATCTCCACACGTAGTCA
66 GACATAATCTCCACACGTAGCCA
26614172 TC
1 TC
26614174 GGGTCTTACC
Statistics
Matches: 85, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 85 1.00
ACGTcount: A:0.26, C:0.34, G:0.18, T:0.22
Consensus pattern (88 bp):
TCCACACGAAGTCATCGGGTCTCACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
GACATAATCTCCACACGTAGCCA
Found at i:26614390 original size:50 final size:48
Alignment explanation
Indices: 26614333--26614517 Score: 264
Period size: 48 Copynumber: 3.8 Consensus size: 48
26614323 GCACATCGCC
* *
26614333 TACATATTTCACACTAGCCATTTGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
26614383 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
* *
26614431 TACATATTTCACATTAGTCATTCGACTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
26614479 TACATATTTCACATTAGCCATTCAGATTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
26614518 TGCATGTTCA
Statistics
Matches: 121, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
48 78 0.64
49 2 0.02
50 41 0.34
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:26614522 original size:98 final size:97
Alignment explanation
Indices: 26614333--26614516 Score: 273
Period size: 98 Copynumber: 1.9 Consensus size: 97
26614323 GCACATCGCC
* * *
26614333 TACATATTTCACACTAGCCATTTGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCA-ATACATATTTCACATT
* *
26614398 GACCATTCGGCTTTACCACATATGCATATCTCA
65 GACCATTCAGATTTACCACATATGCATATCTCA
* *
26614431 TACATATTTCACATTAGTCATTCGACTTTACCACATATACATATCTC-ATACATATTTCACATT-
1 TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCAATACATATTTCACATTG
26614494 AGCCATTCAGATTTACCACATAT
66 A-CCATTCAGATTTACCACATAT
26614517 ATGCATGTTC
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
95 1 0.01
96 34 0.44
98 43 0.55
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCAATACATATTTCACATTG
ACCATTCAGATTTACCACATATGCATATCTCA
Found at i:26614566 original size:47 final size:47
Alignment explanation
Indices: 26614487--26614634 Score: 215
Period size: 47 Copynumber: 3.1 Consensus size: 47
26614477 CATACATATT
* * ** * *
26614487 TCACATTAGCCATTCAGATTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
26614534 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
26614581 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
26614628 TCACATT
1 TCACATT
26614635 AAATCCTAAA
Statistics
Matches: 89, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 89 1.00
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:26618691 original size:40 final size:40
Alignment explanation
Indices: 26618659--26619126 Score: 728
Period size: 40 Copynumber: 11.8 Consensus size: 40
26618649 CCAGCATGAT
* * * *
26618659 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
26618699 TGCTCTTCGGAACTTA-CCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** *
26618738 TGCTCTTCGGGACTTAGTTCGGATACATCACTAGCACGAT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
26618778 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* **
26618818 TGCTCTTCGAGACTTAGTGCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
26618858 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
26618898 TGCTCTTC-GGACTTAGCCCGGAT--ATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
26618935 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
26618975 TGCTCTTCGGGACTTAGTCCAGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
26619015 TGCTCTTCAGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
26619055 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
26619095 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
26619127 CTCAATTCTC
Statistics
Matches: 395, Mismatches: 29, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
37 21 0.05
38 15 0.04
39 49 0.12
40 310 0.78
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:26619002 original size:197 final size:197
Alignment explanation
Indices: 26618659--26619120 Score: 739
Period size: 197 Copynumber: 2.3 Consensus size: 197
26618649 CCAGCATGAT
* * * *
26618659 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGAACTTA-CCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGG-ACTTAGCCCGGAT-
** *
26618723 CATCACTAGCACGAATGCTCTTCGGGACTTAGTTCGGATACATCACTAGCACGATTGCTCTTCGG
64 -ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGG
* * **
26618788 GACTTAGTCCGGATACATCACTAGCATGAATGCTCTTC-GAGACTTAGTGCGGATACATCACTAG
128 GACTTAGTCCAGATACATCACTAGCACGAATGCTCTTCAG-GACTTAGCCCGGATACATCACTAG
26618852 CACGAA
192 CACGAA
*
26618858 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATAT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATAT
*
26618923 CACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
66 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
*
26618988 TTAGTCCAGATACATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATATATCACTAGCACG
131 TTAGTCCAGATACATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATACATCACTAGCACG
26619053 AA
196 AA
26619055 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTC-GGACTTAGCCCGGATA
26619120 T
65 T
26619121 ATCACTCTCA
Statistics
Matches: 245, Mismatches: 15, Indels: 7
0.92 0.06 0.03
Matches are distributed among these distances:
197 170 0.69
198 23 0.09
199 52 0.21
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (197 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATAT
CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
TTAGTCCAGATACATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATACATCACTAGCACG
AA
Found at i:26620433 original size:37 final size:37
Alignment explanation
Indices: 26620391--26620571 Score: 301
Period size: 37 Copynumber: 4.9 Consensus size: 37
26620381 TTAGCTCAGA
* * * *
26620391 AATCTCCACACGAAGTTATCGGGTCTTACACGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
26620428 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* *
26620465 AATCTCCACACGTAGTCATC-GTTCTTACCCAGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
26620501 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
26620538 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
26620572 ATATATTCCA
Statistics
Matches: 135, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
36 34 0.25
37 101 0.75
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Done.