Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 84 of 250
Found at i:26620506 original size:73 final size:74
Alignment explanation
Indices: 26620391--26620568 Score: 295
Period size: 73 Copynumber: 2.4 Consensus size: 74
26620381 TTAGCTCAGA
* * * *
26620391 AATCTCCACACGAAGTTATCGGGTCTTACACGGACAAAATCTCCACACGTAGTCATCGGGTCTTA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAAAATCTCCACACGTAGTCATCGGGTCTTA
26620456 CCCGGACAT
66 CCCGGACAT
* *
26620465 AATCTCCACACGTAGTCATC-GTTCTTACCCAGACATAATCTCCACACGTAGTCATCGGGTCTTA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAAAATCTCCACACGTAGTCATCGGGTCTTA
26620529 CCCGGACAT
66 CCCGGACAT
26620538 AATCTCCACACGTAGTCATCGGGTCTTACCC
1 AATCTCCACACGTAGTCATCGGGTCTTACCC
26620569 GGAATATATT
Statistics
Matches: 96, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
73 69 0.72
74 27 0.28
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.25
Consensus pattern (74 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAAAATCTCCACACGTAGTCATCGGGTCTTA
CCCGGACAT
Found at i:26620831 original size:98 final size:95
Alignment explanation
Indices: 26620715--26620897 Score: 278
Period size: 98 Copynumber: 1.9 Consensus size: 95
26620705 GCACATCGCC
* *
26620715 TACATATTTCACACTAGCCATTCGGCTTTATCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATT
* *
26620780 -GACTATTCGGCTTTACCACATATGCATATCTCA
64 AG-CCATTC-GATTTACCACATATGCATATCTCA
*
26620813 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
26620878 CCATTCGATTTACCACATAT
66 CCATTCGATTTACCACATAT
26620898 ATGCATGTTC
Statistics
Matches: 79, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
95 13 0.16
96 20 0.25
97 1 0.01
98 45 0.57
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (95 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGATTTACCACATATGCATATCTCA
Found at i:26620910 original size:48 final size:48
Alignment explanation
Indices: 26620715--26620898 Score: 273
Period size: 48 Copynumber: 3.8 Consensus size: 48
26620705 GCACATCGCC
* *
26620715 TACATATTTCACACTAGCCATTCGGCTTTATCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
26620765 TATATATTTCACATT-GACTATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
26620813 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
26620861 TACATATTTCACATTAGCCATTC-GATTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
26620899 TGCATGTTCA
Statistics
Matches: 123, Mismatches: 9, Indels: 7
0.88 0.06 0.05
Matches are distributed among these distances:
47 14 0.11
48 67 0.54
49 2 0.02
50 40 0.33
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:26620950 original size:47 final size:46
Alignment explanation
Indices: 26620891--26621013 Score: 183
Period size: 47 Copynumber: 2.6 Consensus size: 46
26620881 TTCGATTTAC
*
26620891 CACATATATGCATGTTCATATTCACCAGATTGGCCATTCGGCCTTAT
1 CACATATATGCATGTTCA-ATTCACCACATTGGCCATTCGGCCTTAT
* * *
26620938 CACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTAT
1 CACATATATGCATGTTCA-ATTCACCACATTGGCCATTCGGCCTTAT
*
26620985 CACATATATGCATGTTCAATTCATCACAT
1 CACATATATGCATGTTCAATTCACCACAT
26621014 AAATCCTAAA
Statistics
Matches: 69, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
46 11 0.16
47 58 0.84
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.33
Consensus pattern (46 bp):
CACATATATGCATGTTCAATTCACCACATTGGCCATTCGGCCTTAT
Found at i:26623723 original size:31 final size:31
Alignment explanation
Indices: 26623683--26623796 Score: 187
Period size: 31 Copynumber: 3.7 Consensus size: 31
26623673 TCAGTCTCGA
* *
26623683 CATAT-ACTGGGTCGAAGCCTTTTCAGAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
26623713 CATATCACTGGGCCAAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
26623744 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
26623775 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
26623797 ACTGTAAACG
Statistics
Matches: 79, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
30 18 0.23
31 61 0.77
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:26624045 original size:25 final size:25
Alignment explanation
Indices: 26624017--26624086 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
26624007 CTCTTTTAAT
* *
26624017 AACTGGGGCAAATCCCTTTTTGAAA
1 AACTGGGGCAAAGCCCTTTTCGAAA
**
26624042 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGAAA
* *
26624067 AACTGGGGCATAGCCTTTTT
1 AACTGGGGCAAAGCCCTTTT
26624087 AGCACTTCCT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGAAA
Found at i:26624958 original size:27 final size:27
Alignment explanation
Indices: 26624898--26624973 Score: 75
Period size: 27 Copynumber: 2.8 Consensus size: 27
26624888 GCATATTCGC
*
26624898 CATTTTACCATACAGGGGTATTACGGT
1 CATTTTACCATAAAGGGGTATTACGGT
* *
26624925 CACTTTACCCTAAAGGGGCT-TTACGGT
1 CATTTTACCATAAAGGGG-TATTACGGT
* *
26624952 CTTTTTACC-TATTAGGGGTATT
1 CATTTTACCATA-AAGGGGTATT
26624974 TTAGTCATTT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 36 0.90
28 1 0.03
ACGTcount: A:0.22, C:0.20, G:0.21, T:0.37
Consensus pattern (27 bp):
CATTTTACCATAAAGGGGTATTACGGT
Found at i:26625044 original size:27 final size:27
Alignment explanation
Indices: 26625014--26625099 Score: 86
Period size: 27 Copynumber: 3.1 Consensus size: 27
26625004 GTAAATCTAC
26625014 AAACCAAAGGTATTTCAGTAATTTTGT
1 AAACCAAAGGTATTTCAGTAATTTTGT
*
26625041 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAAGGTATTTC-AGTAATTTTGT
* * *
26625067 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAAGGTATTTCAGTAATTTTGT
26625097 AAA
1 AAA
26625100 TTAGGGGTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
26 1 0.02
27 22 0.45
28 7 0.14
29 18 0.37
30 1 0.02
ACGTcount: A:0.36, C:0.09, G:0.15, T:0.40
Consensus pattern (27 bp):
AAACCAAAGGTATTTCAGTAATTTTGT
Found at i:26625117 original size:27 final size:27
Alignment explanation
Indices: 26625077--26625200 Score: 135
Period size: 27 Copynumber: 4.6 Consensus size: 27
26625067 AGAAAGTCAA
** *
26625077 GGGTATTTCT-GTAATTTTGTAAATTAG
1 GGGTATTT-TGGTAATTTTACAAACTAG
*
26625104 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * * *
26625130 AGGGTATTTCGATAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAACTAG
*
26625158 TGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
26625185 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
26625201 CTATCCTACA
Statistics
Matches: 80, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
26 3 0.04
27 76 0.95
28 1 0.01
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:26625216 original size:81 final size:81
Alignment explanation
Indices: 26625078--26625233 Score: 192
Period size: 81 Copynumber: 1.9 Consensus size: 81
26625068 GAAAGTCAAG
** * * **
26625078 GGTATTTCTGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTC-GA
1 GGTATTTCTGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTACAAACAGAGGGTATTTCAG-
26625142 TAATTTCACAAACCAGT
65 TAATTTCACAAACCAGT
**
26625159 GGTATTT-TGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTATCCTACAG-GGGTATTTCA
1 GGTATTTCT-GTAATTTTACAAACTAGGGGTATTTTGGTAATTCTA-CAAACAGAGGGTATTTCA
26625222 GTAATTTCACAA
64 GTAATTTCACAA
26625234 TCGAGGGTAA
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
80 1 0.02
81 59 0.92
82 4 0.06
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (81 bp):
GGTATTTCTGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTACAAACAGAGGGTATTTCAGT
AATTTCACAAACCAGT
Found at i:26625240 original size:27 final size:27
Alignment explanation
Indices: 26625102--26625240 Score: 97
Period size: 27 Copynumber: 5.1 Consensus size: 27
26625092 TTTGTAAATT
* *
26625102 AGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGGTATTTTGGTAATTTCAC-AATCG
* * * *
26625130 A-GGGTATTTCGATAATTTCACAAACC
1 AGGGGTATTTTGGTAATTTCACAATCG
* * * *
26625156 AGTGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTCACAATCG
*
26625183 AGGGGTATTTTGGTAA-TTCTATC-CTAC-
1 AGGGGTATTTTGGTAATTTC-A-CAAT-CG
**
26625210 AGGGGTATTTCAGTAATTTCACAATCG
1 AGGGGTATTTTGGTAATTTCACAATCG
26625237 AGGG
1 AGGG
26625241 TAAAACGGTA
Statistics
Matches: 86, Mismatches: 18, Indels: 15
0.72 0.15 0.13
Matches are distributed among these distances:
26 7 0.08
27 73 0.85
28 6 0.07
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTCACAATCG
Found at i:26625333 original size:27 final size:27
Alignment explanation
Indices: 26625232--26625348 Score: 119
Period size: 27 Copynumber: 4.3 Consensus size: 27
26625222 GTAATTTCAC
* * *
26625232 AATCGAGGGTAAAACGGTAGTTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTATA
*
26625259 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTTTATA
* *
26625286 AATCGAGGGTAAAATGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTATA
*** *
26625313 AATCGAGGGTACTTTGGTAATTTTACA
1 AATCGAGGGTAAAATGGTAATTTTATA
*
26625340 AGTCGAGGG
1 AATCGAGGG
26625349 CATTTCAATA
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 1 0.01
27 74 0.97
28 1 0.01
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.31
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTATA
Found at i:26632492 original size:41 final size:41
Alignment explanation
Indices: 26632435--26632514 Score: 142
Period size: 41 Copynumber: 2.0 Consensus size: 41
26632425 ATTGCGAGTT
*
26632435 TGCACGGTGTGCCATTGTCAATAGTATCTGATAGAGACCTG
1 TGCACGATGTGCCATTGTCAATAGTATCTGATAGAGACCTG
*
26632476 TGCACGATGTGCCATTGTCAATATTATCTGATAGAGACC
1 TGCACGATGTGCCATTGTCAATAGTATCTGATAGAGACC
26632515 CGAGATTTAC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (41 bp):
TGCACGATGTGCCATTGTCAATAGTATCTGATAGAGACCTG
Found at i:26634709 original size:42 final size:43
Alignment explanation
Indices: 26634650--26634742 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 43
26634640 GATTTATATA
* ** * *
26634650 TAAGACCATGTCTGGGACATTGGCATCG-TATCTG-ATTTCGTG
1 TAAGACCATGTATGGGACAGAGGCATCGATAT-TGAATTACATG
*
26634692 TAAGACCCTGTATGGGACAGAGGCATCGATATTGAATTACATG
1 TAAGACCATGTATGGGACAGAGGCATCGATATTGAATTACATG
26634735 TAAGACCA
1 TAAGACCA
26634743 CGTCCGAGAC
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
42 26 0.62
43 16 0.38
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (43 bp):
TAAGACCATGTATGGGACAGAGGCATCGATATTGAATTACATG
Found at i:26638129 original size:9 final size:9
Alignment explanation
Indices: 26638115--26638147 Score: 66
Period size: 9 Copynumber: 3.7 Consensus size: 9
26638105 GTGCTGGGTT
26638115 AATGTGTCA
1 AATGTGTCA
26638124 AATGTGTCA
1 AATGTGTCA
26638133 AATGTGTCA
1 AATGTGTCA
26638142 AATGTG
1 AATGTG
26638148 CAATTAGGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.33, C:0.09, G:0.24, T:0.33
Consensus pattern (9 bp):
AATGTGTCA
Found at i:26639109 original size:46 final size:48
Alignment explanation
Indices: 26639056--26639180 Score: 157
Period size: 48 Copynumber: 2.6 Consensus size: 48
26639046 TATGTGTGCT
* * *
26639056 AGTGTAAGACATGTTTAGGACATGCATCAGCCAC-ATAT-TGA-GAGCC
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCACGAGATAT-ACCAGCC
* * *
26639102 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACCAGCC
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCACGAGATATACCAGCC
*
26639150 AGTGTGAGACATGTTTGGGACATGCATCAGC
1 AGTGTAAGACATGTTTGGGACATGCATCAGC
26639181 AAAATCAGGT
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 30 0.45
47 4 0.06
48 33 0.49
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACATGTTTGGGACATGCATCAGCCACGAGATATACCAGCC
Found at i:26651015 original size:40 final size:40
Alignment explanation
Indices: 26650945--26651135 Score: 287
Period size: 40 Copynumber: 4.8 Consensus size: 40
26650935 CGGATGACAA
* *
26650945 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
*
26650985 CGAAGGCACTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
26651025 CGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* *
26651065 CGAAGGCATTGGTGCGAGCTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
26651105 CGAAGGCATTTGAGCGAG-TAGCTATATCCGG
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGG
26651136 TTAAATCCTG
Statistics
Matches: 139, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
39 2 0.01
40 136 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:26651157 original size:80 final size:81
Alignment explanation
Indices: 26650945--26651157 Score: 274
Period size: 80 Copynumber: 2.7 Consensus size: 81
26650935 CGGATGACAA
* * * * *
26650945 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCGAAGGCACTT-GTGCGAGTTACT
1 CGAAGGCATTTGAGCAAGTTACTATA-TCCGGGCTAAATCCCGAAGGCACTTGGTGCGAGCTACT
26651008 ATATCCGGGCTAAGTCC
65 ATATCCGGGCTAAGTCC
* *
26651025 CGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCA-TTGGTGCGAGCTACTA
1 CGAAGGCATTTGAGCAAGTTACTATATCCGGGCTAAATCCCGAAGGCACTTGGTGCGAGCTACTA
26651089 TATCCGGGCTAAGTCC
66 TATCCGGGCTAAGTCC
* * * *
26651105 CGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATCCTGAAGGTACTTGGT
1 CGAAGGCATTTGAGCAAGTTA-CTATATCCGGGCTAAATCCCGAAGGCACTTGGT
26651158 TTGGGAATGA
Statistics
Matches: 120, Mismatches: 9, Indels: 8
0.88 0.07 0.06
Matches are distributed among these distances:
79 18 0.15
80 101 0.84
81 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
CGAAGGCATTTGAGCAAGTTACTATATCCGGGCTAAATCCCGAAGGCACTTGGTGCGAGCTACTA
TATCCGGGCTAAGTCC
Found at i:26659336 original size:40 final size:40
Alignment explanation
Indices: 26659266--26659430 Score: 192
Period size: 40 Copynumber: 4.2 Consensus size: 40
26659256 CGGATGACAA
* * *
26659266 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCT
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
26659306 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * * *
26659346 CGGAGGCATTGGTGCGAGCTACTATATCCGGGCTATGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
** * *
26659386 CGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCC
26659425 CGAAGG
1 CGAAGG
26659431 TACTTTGTTT
Statistics
Matches: 109, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 15 0.14
40 93 0.85
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:26661987 original size:34 final size:34
Alignment explanation
Indices: 26661944--26662018 Score: 80
Period size: 34 Copynumber: 2.2 Consensus size: 34
26661934 AAGGTCTTAG
* * *
26661944 CCCCTTTTCAATAACGGTA-GCAGTTTGGGCCTGA
1 CCCCATTTCAATAACAG-AGGCAGTCTGGGCCTGA
* * *
26661978 GCCCATTTCAGTAACAGAGGCAGTCTGGGCCTTA
1 CCCCATTTCAATAACAGAGGCAGTCTGGGCCTGA
26662012 CCCCATT
1 CCCCATT
26662019 CTAGTATAGT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
33 1 0.03
34 32 0.97
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27
Consensus pattern (34 bp):
CCCCATTTCAATAACAGAGGCAGTCTGGGCCTGA
Found at i:26663307 original size:10 final size:11
Alignment explanation
Indices: 26663292--26663320 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
26663282 CAAACCTTCA
26663292 GAAAGAAAC-G
1 GAAAGAAACAG
26663302 GAAAGAAACAG
1 GAAAGAAACAG
26663313 GAAAGAAA
1 GAAAGAAA
26663321 AGAGGAGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.50
11 9 0.50
ACGTcount: A:0.66, C:0.07, G:0.28, T:0.00
Consensus pattern (11 bp):
GAAAGAAACAG
Found at i:26668025 original size:36 final size:36
Alignment explanation
Indices: 26667994--26668066 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
26667984 ATTTGTATGT
26667994 ATGTTTCTGTAGGGATTGCACATTGAGTTTGTGAAA
1 ATGTTTCTGTAGGGATTGCACATTGAGTTTGTGAAA
26668030 ATGTTTCTGTAGGGATTGCACATTGAGTTTGTGAAA
1 ATGTTTCTGTAGGGATTGCACATTGAGTTTGTGAAA
26668066 A
1 A
26668067 CTCACCTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.26, C:0.08, G:0.27, T:0.38
Consensus pattern (36 bp):
ATGTTTCTGTAGGGATTGCACATTGAGTTTGTGAAA
Found at i:26670344 original size:29 final size:29
Alignment explanation
Indices: 26670307--26670399 Score: 118
Period size: 29 Copynumber: 3.2 Consensus size: 29
26670297 TATCTCTATG
*
26670307 AAAACGAAGACATTGTGGCAATCTTTGTT
1 AAAAGGAAGACATTGTGGCAATCTTTGTT
* *
26670336 AAAAGGAAGCCTTTGTGGCAATCTTTGTT
1 AAAAGGAAGACATTGTGGCAATCTTTGTT
*
26670365 AAAAGGAA-ACATTTGTGGCTATCTCTT-TT
1 AAAAGGAAGACA-TTGTGGCAATCT-TTGTT
26670394 AAAAGG
1 AAAAGG
26670400 GTGCATTTGT
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
28 1 0.02
29 53 0.95
30 2 0.04
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.32
Consensus pattern (29 bp):
AAAAGGAAGACATTGTGGCAATCTTTGTT
Found at i:26670383 original size:58 final size:56
Alignment explanation
Indices: 26670319--26670468 Score: 142
Period size: 58 Copynumber: 2.6 Consensus size: 56
26670309 AACGAAGACA
* *
26670319 TTGTGGCAATCTTTGTTAAAAGGAAGCCTTTGTGG-CAATCTTTGTTAAAAGGAAACAT-
1 TTGTGGCAATCTTT-TTAAAAGGATGCCTTTGTGGCCAA-CTTAGTT-AAAGG-AACATC
* * * * *
26670377 TTGTGGCTATCTCTTTTAAAAGGGTGCATTTGTGGCCAACTTAGTTAAATGAATATC
1 TTGTGGCAATCT-TTTTAAAAGGATGCCTTTGTGGCCAACTTAGTTAAAGGAACATC
* * *
26670434 TTGTGGAAAACTCTATTAAAAGGATGCCTTTGTGG
1 TTGTGGCAATCT-TTTTAAAAGGATGCCTTTGTGG
26670469 TGAGACTCTA
Statistics
Matches: 76, Mismatches: 13, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
56 4 0.05
57 33 0.43
58 34 0.45
59 5 0.07
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.36
Consensus pattern (56 bp):
TTGTGGCAATCTTTTTAAAAGGATGCCTTTGTGGCCAACTTAGTTAAAGGAACATC
Found at i:26670406 original size:29 final size:29
Alignment explanation
Indices: 26670319--26670425 Score: 128
Period size: 29 Copynumber: 3.7 Consensus size: 29
26670309 AACGAAGACA
*
26670319 TTGTGGCAATCTTTGTTAAAAGGAAGCCT
1 TTGTGGCAATCTTTGTTAAAAGGAAGCAT
*
26670348 TTGTGGCAATCTTTGTTAAAAGGAAACAT
1 TTGTGGCAATCTTTGTTAAAAGGAAGCAT
* **
26670377 TTGTGGCTATCTCTT-TTAAAAGGGTGCAT
1 TTGTGGCAATCT-TTGTTAAAAGGAAGCAT
*
26670406 TTGTGGCCAA-CTTAGTTAAA
1 TTGTGG-CAATCTTTGTTAAA
26670426 TGAATATCTT
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 1 0.01
29 62 0.93
30 4 0.06
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.36
Consensus pattern (29 bp):
TTGTGGCAATCTTTGTTAAAAGGAAGCAT
Found at i:26670466 original size:57 final size:58
Alignment explanation
Indices: 26670334--26670468 Score: 141
Period size: 57 Copynumber: 2.3 Consensus size: 58
26670324 GCAATCTTTG
* * ** * *
26670334 TTAAAAGGAAGCCTTTGTGGCAATCTTTGTTAAAAGGAAACATTTGTGGCTATCTCTT
1 TTAAAAGGATGCCTTTGTGGCAATCTTAGTTAAAAGGAAACATTTGTGGAAAACTCTA
* * * *
26670392 TTAAAAGGGTGCATTTGTGGCCAA-CTTAGTT-AAATG-AATATCTTGTGGAAAACTCTA
1 TTAAAAGGATGCCTTTGTGG-CAATCTTAGTTAAAAGGAAACAT-TTGTGGAAAACTCTA
26670449 TTAAAAGGATGCCTTTGTGG
1 TTAAAAGGATGCCTTTGTGG
26670469 TGAGACTCTA
Statistics
Matches: 63, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
56 4 0.06
57 33 0.52
58 23 0.37
59 3 0.05
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.35
Consensus pattern (58 bp):
TTAAAAGGATGCCTTTGTGGCAATCTTAGTTAAAAGGAAACATTTGTGGAAAACTCTA
Found at i:26675159 original size:22 final size:22
Alignment explanation
Indices: 26675133--26675176 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
26675123 GAAAATAATC
* *
26675133 AAAATTTATCAAAATTTATTAT
1 AAAATTAATCAAAATTCATTAT
*
26675155 AAAATTAATTAAAATTCATTAT
1 AAAATTAATCAAAATTCATTAT
26675177 GTTAATAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (22 bp):
AAAATTAATCAAAATTCATTAT
Found at i:26678055 original size:25 final size:26
Alignment explanation
Indices: 26678027--26678086 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 26
26678017 TAATTAATAT
*
26678027 AAAATATTAATAATTCAAT-AAATTG
1 AAAATATTAATAATTAAATGAAATTG
* *
26678052 AAAA-ATTAAATGATTAAATGAAATTT
1 AAAATATT-AATAATTAAATGAAATTG
26678078 AAAAT-TTAA
1 AAAATATTAA
26678087 GGGAAAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
24 3 0.10
25 15 0.52
26 11 0.38
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (26 bp):
AAAATATTAATAATTAAATGAAATTG
Found at i:26683848 original size:54 final size:54
Alignment explanation
Indices: 26683784--26683893 Score: 166
Period size: 54 Copynumber: 2.0 Consensus size: 54
26683774 CTCGAACCAC
*
26683784 TTCTGAGTATGTTTTATGATCTCATAAAACCTTATAAGGGACGATGTGAATGAT
1 TTCTGAGTATGTTTTAAGATCTCATAAAACCTTATAAGGGACGATGTGAATGAT
* ** * *
26683838 TTCTGAGTATGTTTTAAGGTCTCATGGATCCTTATACGGGACGATGTGAATGAT
1 TTCTGAGTATGTTTTAAGATCTCATAAAACCTTATAAGGGACGATGTGAATGAT
26683892 TT
1 TT
26683894 GATTGGATTT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.27, C:0.12, G:0.23, T:0.38
Consensus pattern (54 bp):
TTCTGAGTATGTTTTAAGATCTCATAAAACCTTATAAGGGACGATGTGAATGAT
Found at i:26701594 original size:42 final size:42
Alignment explanation
Indices: 26701482--26701601 Score: 145
Period size: 43 Copynumber: 2.8 Consensus size: 42
26701472 TACCATACCA
* *
26701482 ATGCCATATCCTAGATATGGTCTTACATGTAATCTAGTGTCG
1 ATGCCATATCCTAGATATGGTCTTACAAGTAATCTAGTATCG
* * * *
26701524 ATGACAATAGCCCAGCTATGGTCTTACAAG-AAGTCTCA-TATCG
1 ATG-CCATATCCTAGATATGGTCTTACAAGTAA-TCT-AGTATCG
26701567 ATGCCATATCCTAGATATGGTCTTACAAGTAATCT
1 ATGCCATATCCTAGATATGGTCTTACAAGTAATCT
26701602 TAACAACCCT
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
42 30 0.47
43 33 0.52
44 1 0.02
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCTAGATATGGTCTTACAAGTAATCTAGTATCG
Found at i:26704254 original size:21 final size:20
Alignment explanation
Indices: 26704225--26704266 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
26704215 CGAAATGCAA
26704225 TCAACCTAACA-TGAATTAAAT
1 TCAACCTAA-ATTG-ATTAAAT
*
26704246 TCAAGCTAAATTGATTAAAT
1 TCAACCTAAATTGATTAAAT
26704266 T
1 T
26704267 AAACATTCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.45, C:0.14, G:0.07, T:0.33
Consensus pattern (20 bp):
TCAACCTAAATTGATTAAAT
Found at i:26705137 original size:22 final size:22
Alignment explanation
Indices: 26705109--26705152 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
26705099 GAAAGTAATC
26705109 AAAATTAATCAAGAATT-ATTAT
1 AAAATTAATCAA-AATTCATTAT
*
26705131 AAAATTAATTAAAATTCATTAT
1 AAAATTAATCAAAATTCATTAT
26705153 GTTAATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.39
Consensus pattern (22 bp):
AAAATTAATCAAAATTCATTAT
Found at i:26706349 original size:53 final size:53
Alignment explanation
Indices: 26706282--26706407 Score: 191
Period size: 53 Copynumber: 2.4 Consensus size: 53
26706272 TTGGTGGACA
*
26706282 ACCCCATTTTTATTGTCCTAGCAGACTATCCATGTTTAAT-GTCCTGGCAAACT
1 ACCCTATTTTTATTGTCCTAGCAGACTATCCATGTTT-ATCGTCCTGGCAAACT
* *
26706335 ACCCTATTTTTATTGTCCTAGCAGACTATTCATGTTTATCGTCCTGGCAGACT
1 ACCCTATTTTTATTGTCCTAGCAGACTATCCATGTTTATCGTCCTGGCAAACT
* *
26706388 ACCCTGTGTTTATTGTCCTA
1 ACCCTATTTTTATTGTCCTA
26706408 ATAGACTCCA
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
52 2 0.03
53 65 0.97
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.39
Consensus pattern (53 bp):
ACCCTATTTTTATTGTCCTAGCAGACTATCCATGTTTATCGTCCTGGCAAACT
Found at i:26706352 original size:27 final size:26
Alignment explanation
Indices: 26706284--26706407 Score: 131
Period size: 26 Copynumber: 4.7 Consensus size: 26
26706274 GGTGGACAAC
*
26706284 CCCATTTTTATTGTCCTAGCAGACTA
1 CCCATGTTTATTGTCCTAGCAGACTA
* * * *
26706310 TCCATGTTTAATGTCCTGGCAAACTA
1 CCCATGTTTATTGTCCTAGCAGACTA
*
26706336 CCCTATTTTTATTGTCCTAGCAGACTA
1 CCC-ATGTTTATTGTCCTAGCAGACTA
** * *
26706363 TTCATGTTTATCGTCCTGGCAGACTA
1 CCCATGTTTATTGTCCTAGCAGACTA
*
26706389 CCCTGTGTTTATTGTCCTA
1 CCC-ATGTTTATTGTCCTA
26706408 ATAGACTCCA
Statistics
Matches: 76, Mismatches: 20, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
26 44 0.58
27 32 0.42
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.40
Consensus pattern (26 bp):
CCCATGTTTATTGTCCTAGCAGACTA
Found at i:26711463 original size:26 final size:28
Alignment explanation
Indices: 26711434--26711486 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 28
26711424 GTGATTTTTA
26711434 TAGATTCACAGTGG-TTTTTTT-TTTGG
1 TAGATTCACAGTGGATTTTTTTATTTGG
*
26711460 TAGATTCATAGTGGATTTTTTTATTTG
1 TAGATTCACAGTGGATTTTTTTATTTG
26711487 AGATTTAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 13 0.54
27 7 0.29
28 4 0.17
ACGTcount: A:0.19, C:0.06, G:0.21, T:0.55
Consensus pattern (28 bp):
TAGATTCACAGTGGATTTTTTTATTTGG
Found at i:26712483 original size:28 final size:28
Alignment explanation
Indices: 26712443--26712499 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
26712433 TCAAGTTTTT
26712443 CCTACCTAACCTTAGCTACTTGATACTA
1 CCTACCTAACCTTAGCTACTTGATACTA
26712471 CCTACCTAACCTTAGCTACTTGATACTA
1 CCTACCTAACCTTAGCTACTTGATACTA
26712499 C
1 C
26712500 ATCTTTATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.28, C:0.33, G:0.07, T:0.32
Consensus pattern (28 bp):
CCTACCTAACCTTAGCTACTTGATACTA
Found at i:26717259 original size:28 final size:28
Alignment explanation
Indices: 26717219--26717316 Score: 153
Period size: 28 Copynumber: 3.5 Consensus size: 28
26717209 ATAGTAAGTC
* *
26717219 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATTAAACT
26717247 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATTAAACT
*
26717275 CGCACATTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATTAAACT
26717303 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26717317 CAATCTCATT
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
28 64 0.98
29 1 0.02
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATTAAACT
Found at i:26722571 original size:30 final size:30
Alignment explanation
Indices: 26722535--26722620 Score: 145
Period size: 30 Copynumber: 2.9 Consensus size: 30
26722525 TGAGAAAATG
*
26722535 ACATTTACATGTCCATACGGTATGTTTACA
1 ACATTTACATGTCCATACGGTACGTTTACA
**
26722565 ACATTTACATGTCCATACGGTACGTTTATG
1 ACATTTACATGTCCATACGGTACGTTTACA
26722595 ACATTTACATGTCCATACGGTACGTT
1 ACATTTACATGTCCATACGGTACGTT
26722621 GACTTATCGA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 53 1.00
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.36
Consensus pattern (30 bp):
ACATTTACATGTCCATACGGTACGTTTACA
Found at i:26733697 original size:24 final size:24
Alignment explanation
Indices: 26733670--26733719 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
26733660 TTTCAATTTG
*
26733670 TTTTT-CATTT-TATTTTATTTTTA
1 TTTTTGCATTTCT-TTTTATCTTTA
26733693 TTTTTGCATTTCTTTTTATCTTTA
1 TTTTTGCATTTCTTTTTATCTTTA
26733717 TTT
1 TTT
26733720 ATCGTTTTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 5 0.21
24 18 0.75
25 1 0.04
ACGTcount: A:0.14, C:0.08, G:0.02, T:0.76
Consensus pattern (24 bp):
TTTTTGCATTTCTTTTTATCTTTA
Found at i:26747352 original size:25 final size:23
Alignment explanation
Indices: 26747308--26747381 Score: 62
Period size: 23 Copynumber: 3.1 Consensus size: 23
26747298 GCAATATTCG
*
26747308 GTAAGCTCCTCTTGAACTGATGAACA
1 GTAAGCT-CTATTGAACTGA--AACA
* *
26747334 GTAAGCTCTATTGAGCTGAAACG
1 GTAAGCTCTATTGAACTGAAACA
*
26747357 GTAAGCTCT-TTCAAGCTG-AACA
1 GTAAGCTCTATTGAA-CTGAAACA
26747379 GTA
1 GTA
26747382 TACTCATACG
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
22 9 0.22
23 15 0.37
25 10 0.24
26 7 0.17
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (23 bp):
GTAAGCTCTATTGAACTGAAACA
Found at i:26747360 original size:23 final size:24
Alignment explanation
Indices: 26747306--26747365 Score: 68
Period size: 23 Copynumber: 2.5 Consensus size: 24
26747296 GAGCAATATT
*
26747306 CGGTAAGCTCCTCTTGAACTGATGAA
1 CGGTAAGCT-CTATTGAACTGA-GAA
* *
26747332 CAGTAAGCTCTATTGAGCTGA-AA
1 CGGTAAGCTCTATTGAACTGAGAA
26747355 CGGTAAGCTCT
1 CGGTAAGCTCT
26747366 TTCAAGCTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
23 12 0.40
25 10 0.33
26 8 0.27
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
CGGTAAGCTCTATTGAACTGAGAA
Found at i:26751358 original size:43 final size:43
Alignment explanation
Indices: 26751297--26751445 Score: 121
Period size: 42 Copynumber: 3.5 Consensus size: 43
26751287 CAATGTCAAC
26751297 GTCCCAGAC-GTGGTCTTACATGTAATTCAATATCGATGACTCT
1 GTCCCAGACAG-GGTCTTACATGTAATTCAATATCGATGACTCT
** *
26751340 GTCCCAGACAGGGTCTTACA-CAAAATC-ATATACGAT-AC-CAAT
1 GTCCCAGACAGGGTCTTACATGTAATTCAATAT-CGATGACTC--T
* * * *
26751382 GTCCCAGACATGGTCTTACATGTAAATCTCAA-ATCGAAGCCTGT
1 GTCCCAGACAGGGTCTTACATGT-AAT-TCAATATCGATGACTCT
* *
26751426 GTCCCAGATACGGTCTTACA
1 GTCCCAGACAGGGTCTTACA
26751446 CGATATTTCA
Statistics
Matches: 84, Mismatches: 12, Indels: 19
0.73 0.10 0.17
Matches are distributed among these distances:
40 1 0.01
41 6 0.07
42 28 0.33
43 18 0.21
44 25 0.30
45 5 0.06
46 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (43 bp):
GTCCCAGACAGGGTCTTACATGTAATTCAATATCGATGACTCT
Found at i:26759791 original size:50 final size:48
Alignment explanation
Indices: 26759673--26759897 Score: 279
Period size: 49 Copynumber: 4.5 Consensus size: 48
26759663 TGAGGTCGCA
* * * * * *
26759673 TGTGTAGTACTAAGTGCTGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CGGATAA-T-TGGTCACG
* **
26759724 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CGGATAATT-GGTCACG
26759774 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-GGATAATTGGTCACG
* *
26759823 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAACGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGT-ACGGATAATTGGTCACG
*
26759872 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
26759898 TGCGTACCAA
Statistics
Matches: 156, Mismatches: 15, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
49 78 0.50
50 46 0.29
51 32 0.21
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (48 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACGGATAATTGGTCACG
Found at i:26759847 original size:99 final size:100
Alignment explanation
Indices: 26759666--26759905 Score: 313
Period size: 99 Copynumber: 2.4 Consensus size: 100
26759656 TCTATTGTGA
* * *
26759666 GGTCGCATGTGTAGTACTAAGTGCTGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTAG
* **
26759731 TACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
66 TACTAAGTGCAGGCTACTACGTGTAACAGATAATT
* * ** * *
26759766 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAA-T-TGGTCACGTGTGTA
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTA
*
26759829 GTACTAAGTGCAGGCTACTACGTGTAACGGATAATT
65 GTACTAAGTGCAGGCTACTACGTGTAACAGATAATT
* * *
26759865 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACC
26759906 AAATAGCTTT
Statistics
Matches: 120, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
98 35 0.29
99 45 0.38
100 1 0.01
101 39 0.32
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.29
Consensus pattern (100 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTAG
TACTAAGTGCAGGCTACTACGTGTAACAGATAATT
Found at i:26763472 original size:46 final size:46
Alignment explanation
Indices: 26763419--26763586 Score: 164
Period size: 46 Copynumber: 3.6 Consensus size: 46
26763409 AGTAGCCGAT
* *
26763419 GCATGTCCCAAACATGTCTTACACTAGC-TTACGTCTCGAGGCTGAA
1 GCATGTCCCAAACATGTCTTACACTAGCACT-CGTCTCAAGGCTGAA
* * * *
26763465 GCATGTCCTAGACATGTCTTACACTAGCACTCGTCTCAATGCTGAT
1 GCATGTCCCAAACATGTCTTACACTAGCACTCGTCTCAAGGCTGAA
* * *
26763511 GCCATGTCCCAAACATGGTCTTACACT-GC-CTC-TCATAATATGGCCGAT
1 G-CATGTCCCAAACAT-GTCTTACACTAGCACTCGTC-TCA-A-GGCTGAA
*
26763559 GCATGTCCCAGACATGTCTTACACTAGC
1 GCATGTCCCAAACATGTCTTACACTAGC
26763587 TAACAGAAGT
Statistics
Matches: 103, Mismatches: 12, Indels: 13
0.80 0.09 0.10
Matches are distributed among these distances:
45 2 0.02
46 54 0.52
47 31 0.30
48 16 0.16
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (46 bp):
GCATGTCCCAAACATGTCTTACACTAGCACTCGTCTCAAGGCTGAA
Found at i:26767224 original size:68 final size:67
Alignment explanation
Indices: 26767152--26767301 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
26767142 CATCATGTGT
* * * *
26767152 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TGTA-TACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAACGACACC
26767214 ATGTAG
62 ATGTAG
** * *
26767220 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAACGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAACGACACCATGT
26767285 AG
66 AG
26767287 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
26767302 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 5 0.07
67 25 0.36
68 13 0.19
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAACGACACCATGT
AG
Found at i:26767257 original size:64 final size:64
Alignment explanation
Indices: 26767176--26767360 Score: 187
Period size: 67 Copynumber: 2.9 Consensus size: 64
26767166 AGACATTATG
* *
26767176 ATGTAGCTAGGTCGCATGGGTGATACTATGTATACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTATACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
26767240 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAACGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TGTA-TACACCATGTAGACAAGAGAGCTACGAGAT
26767305 AA
63 AA
* * * * *
26767307 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGCT
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTATACACCATGTAG-ACAAGAGAGCT
26767361 GAACTATATG
Statistics
Matches: 98, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 17 0.17
67 30 0.31
68 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTATACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:26775076 original size:17 final size:17
Alignment explanation
Indices: 26775054--26775089 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
26775044 AAATACTCGG
26775054 ATATCTTTATTAAGACC
1 ATATCTTTATTAAGACC
26775071 ATATCTTTATTAAGACC
1 ATATCTTTATTAAGACC
26775088 AT
1 AT
26775090 CCTAGAACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.17, G:0.06, T:0.42
Consensus pattern (17 bp):
ATATCTTTATTAAGACC
Found at i:26783716 original size:28 final size:28
Alignment explanation
Indices: 26783676--26783767 Score: 166
Period size: 28 Copynumber: 3.3 Consensus size: 28
26783666 GTGTCCCTGA
26783676 CCCGTGTCCTTCACACGACTTAGACACG
1 CCCGTGTCCTTCACACGACTTAGACACG
26783704 CCCGTGTCCTTCACACGACTTAGACACG
1 CCCGTGTCCTTCACACGACTTAGACACG
**
26783732 CCCGTGTCCTTCACACGACCAAGACACG
1 CCCGTGTCCTTCACACGACTTAGACACG
26783760 CCCGTGTC
1 CCCGTGTC
26783768 ATTGCCCATG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 62 1.00
ACGTcount: A:0.21, C:0.41, G:0.18, T:0.20
Consensus pattern (28 bp):
CCCGTGTCCTTCACACGACTTAGACACG
Found at i:26789169 original size:15 final size:15
Alignment explanation
Indices: 26789151--26789194 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
26789141 GAAGCCCAGA
26789151 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
26789166 ATAAAGAGATCCATG
1 ATAAAGAAATCCAAG
*
26789181 ATAAGGAAATCCAA
1 ATAAAGAAATCCAA
26789195 TTTACAGCAC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.55, C:0.14, G:0.16, T:0.16
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:26804571 original size:47 final size:49
Alignment explanation
Indices: 26804461--26804581 Score: 137
Period size: 47 Copynumber: 2.6 Consensus size: 49
26804451 ACTTGTGTGA
* * *
26804461 GCTACTGTAAGACATGTCTGGGACAT-GCATCGGCCATATTATGAGAGC
1 GCTAATGTAAGACATGTCTAGGACATGGCATCGGCCATATGATGAGAGC
*
26804509 -C-AATGTAAGACCATGTCTAGGACATGGCATTGG-CAT-TGA-GACGAGC
1 GCTAATGTAAGA-CATGTCTAGGACATGGCATCGGCCATATGATGA-GAGC
*
26804555 GCTAGTGTAAGACATGTCTAGGACATG
1 GCTAATGTAAGACATGTCTAGGACATG
26804582 CTTCAGTCTC
Statistics
Matches: 63, Mismatches: 5, Indels: 11
0.80 0.06 0.14
Matches are distributed among these distances:
45 2 0.03
46 14 0.22
47 33 0.52
48 14 0.22
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (49 bp):
GCTAATGTAAGACATGTCTAGGACATGGCATCGGCCATATGATGAGAGC
Found at i:26814147 original size:49 final size:49
Alignment explanation
Indices: 26814091--26814221 Score: 147
Period size: 49 Copynumber: 2.7 Consensus size: 49
26814081 TATTGTGTGT
* *
26814091 CAGTGTAAGACCTATCTGGGACATGGCATCGACAC-CGATAGATGAGAGC
1 CAGTGTAAGACCTATCTGGGACATGGCATCGAC-CTCGATAGATGAAAGA
* * ** * * * *
26814140 CAGTGTAAGACCTGTCTGGGACAAGAAATTGGCCTTGATATATGAAAGA
1 CAGTGTAAGACCTATCTGGGACATGGCATCGACCTCGATAGATGAAAGA
*
26814189 CAGTGTAAGACCTACCTGGGACATGGCATCGAC
1 CAGTGTAAGACCTATCTGGGACATGGCATCGAC
26814222 TTTAATGTGC
Statistics
Matches: 64, Mismatches: 17, Indels: 2
0.77 0.20 0.02
Matches are distributed among these distances:
48 1 0.02
49 63 0.98
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.21
Consensus pattern (49 bp):
CAGTGTAAGACCTATCTGGGACATGGCATCGACCTCGATAGATGAAAGA
Found at i:26818136 original size:48 final size:48
Alignment explanation
Indices: 26818052--26818228 Score: 203
Period size: 48 Copynumber: 3.7 Consensus size: 48
26818042 ATATTGATGA
* * * * *
26818052 CATGTCCTAGACATGGTCTTATA-GGAAATCATATATCGATGCCAATGC
1 CATGTCCCAGACATGGTTTTACATGG-GATCACATATCGATGCCAATGC
* * * * * *
26818100 GATATCCCAGATATGGTTTTACATTGGATCACATATCAATGCCAACGC
1 CATGTCCCAGACATGGTTTTACATGGGATCACATATCGATGCCAATGC
* *
26818148 CATGTCCTAGACATGGTTTGACATGGGATCACATATCGATGCCAATGC
1 CATGTCCCAGACATGGTTTTACATGGGATCACATATCGATGCCAATGC
* *
26818196 CATGTCCCATACATGGTCTTACATGGGATCACA
1 CATGTCCCAGACATGGTTTTACATGGGATCACA
26818229 CATAATTATG
Statistics
Matches: 105, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
48 104 0.99
49 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.28
Consensus pattern (48 bp):
CATGTCCCAGACATGGTTTTACATGGGATCACATATCGATGCCAATGC
Found at i:26818189 original size:96 final size:96
Alignment explanation
Indices: 26818052--26818228 Score: 241
Period size: 96 Copynumber: 1.8 Consensus size: 96
26818042 ATATTGATGA
* * * *
26818052 CATGTCCTAGACATGGTCTTATAGGAAATCATATATCGATGCCAATGCGATATCCCAGATATGGT
1 CATGTCCTAGACATGGTCTTACAGGAAATCACATATCGATGCCAATGCCATATCCCAGACATGGT
* *
26818117 TTTACATTGGATCACATATCAATGCCAACGC
66 CTTACATGGGATCACATATCAATGCCAACGC
* * *
26818148 CATGTCCTAGACATGGT-TTGACATGG-GATCACATATCGATGCCAATGCCATGTCCCATACATG
1 CATGTCCTAGACATGGTCTT-ACA-GGAAATCACATATCGATGCCAATGCCATATCCCAGACATG
26818211 GTCTTACATGGGATCACA
64 GTCTTACATGGGATCACA
26818229 CATAATTATG
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
95 2 0.03
96 66 0.94
97 2 0.03
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.28
Consensus pattern (96 bp):
CATGTCCTAGACATGGTCTTACAGGAAATCACATATCGATGCCAATGCCATATCCCAGACATGGT
CTTACATGGGATCACATATCAATGCCAACGC
Found at i:26832871 original size:46 final size:45
Alignment explanation
Indices: 26832818--26832993 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 45
26832808 TTGTTGAGCA
26832818 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA-G
*** * * * *
26832864 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCAAAG
* * *
26832909 CATCCGAACTCGTTGAGTAGAGTCCGAGTTCACCTATGGATGCAAAC
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAG
* *
26832956 ACCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26832994 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
45 3 0.03
46 67 0.64
47 35 0.33
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAG
Found at i:26832974 original size:93 final size:93
Alignment explanation
Indices: 26832815--26832985 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
26832805 GGATTGTTGA
* * **
26832815 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTAGAGTCCGAGTTCACCTATGGATGCAAATCACCGAACTCGTTGAGT
26832880 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
*
26832908 GCATCCGAACTCGTTGAGTAGAGTCCGAGTTCACCTATGGATGCAAA-CACCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTAGAGTCCGAGTTCACCTATGGATGCAAATCACC-GAACTCGTTGAG
26832972 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
26832986 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTAGAGTCCGAGTTCACCTATGGATGCAAATCACCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:26836199 original size:25 final size:25
Alignment explanation
Indices: 26836171--26836219 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
26836161 TTATAATATG
* *
26836171 AAAAATGACTATTTTGCCCCTAGGT
1 AAAAATGACCATTTTACCCCTAGGT
*
26836196 AAAAATGACCATTTTACCCTTAGG
1 AAAAATGACCATTTTACCCCTAGG
26836220 GTTTAATTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.31
Consensus pattern (25 bp):
AAAAATGACCATTTTACCCCTAGGT
Found at i:26837754 original size:48 final size:48
Alignment explanation
Indices: 26837581--26837763 Score: 233
Period size: 48 Copynumber: 3.8 Consensus size: 48
26837571 TGGCTCATAT
* * * * *
26837581 CAATGACATGTCCCAGACATGGTCTTATACGAAATCATATATCGATGC
1 CAATGCCATGTCCCAGACATGGTCTTACATGAGATCACATATCGATGC
* * * *
26837629 CAATGTCATATCCCAAATATGGTCTTACATGAGATCACATATCGATGC
1 CAATGCCATGTCCCAGACATGGTCTTACATGAGATCACATATCGATGC
* * *
26837677 CAATGCCATGTCCCAGACATGGTCTTACATGGGATTACATATCGGTTG-
1 CAATGCCATGTCCCAGACATGGTCTTACATGAGATCACATATC-GATGC
*
26837725 CAATGCCATGTCCCAGACATGGTCTTACATGGGATCACA
1 CAATGCCATGTCCCAGACATGGTCTTACATGAGATCACA
26837764 CATAACCCTA
Statistics
Matches: 118, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
48 115 0.97
49 3 0.03
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (48 bp):
CAATGCCATGTCCCAGACATGGTCTTACATGAGATCACATATCGATGC
Found at i:26839117 original size:15 final size:15
Alignment explanation
Indices: 26839097--26839126 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26839087 CAACACTTGT
26839097 GCCGAAACCACAAAA
1 GCCGAAACCACAAAA
*
26839112 GCCGAAACCTCAAAA
1 GCCGAAACCACAAAA
26839127 AATACATTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.33, G:0.13, T:0.03
Consensus pattern (15 bp):
GCCGAAACCACAAAA
Found at i:26844122 original size:26 final size:26
Alignment explanation
Indices: 26844086--26844137 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
26844076 CACCACTGAA
* *
26844086 TCGGGGAATCATCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
26844112 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
26844138 CTTTTCATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.21, T:0.15
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:26844211 original size:70 final size:71
Alignment explanation
Indices: 26844098--26844247 Score: 248
Period size: 70 Copynumber: 2.1 Consensus size: 71
26844088 GGGGAATCAT
* *
26844098 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTT-TCATTTCAAATATACAATGG
1 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATGG
26844162 ATATCG
66 ATATCG
***
26844168 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTGG
1 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATGG
26844233 ATATCG
66 ATATCG
26844239 CACTTAGCA
1 CACTTAGCA
26844248 CCACCAATGA
Statistics
Matches: 74, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
70 44 0.59
71 30 0.41
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (71 bp):
CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATGG
ATATCG
Found at i:26844351 original size:104 final size:103
Alignment explanation
Indices: 26844167--26844389 Score: 367
Period size: 104 Copynumber: 2.2 Consensus size: 103
26844157 AATGGATATC
26844167 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
* *
26844232 GATATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GATATCGCACATAGCACCACCAATAAACCGGGGAATCA
26844270 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
26844335 GGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCA
65 GGAT-ATCGCACATAGCACCACCAATAAACCGGGGAATCA
**
26844374 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
26844390 TTTATATACA
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 17 0.15
104 94 0.84
105 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (103 bp):
GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
GATATCGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:26844751 original size:29 final size:29
Alignment explanation
Indices: 26844718--26844781 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
26844708 TAATCCACCA
26844718 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
26844747 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
26844777 CCCAA
1 CCCAA
26844782 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:26844755 original size:30 final size:30
Alignment explanation
Indices: 26844725--26844781 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
26844715 CCACCCAACT
26844725 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
26844754 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
26844782 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:26851845 original size:104 final size:104
Alignment explanation
Indices: 26851723--26851934 Score: 372
Period size: 104 Copynumber: 2.0 Consensus size: 104
26851713 AATGGATATC
26851723 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
26851788 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACCAATAAACCGGGGAATCA
26851827 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
26851892 GGATCACGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
26851931 GCAC
1 GCAC
26851935 ACAAGCAACC
Statistics
Matches: 103, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
104 102 0.99
105 1 0.01
ACGTcount: A:0.31, C:0.31, G:0.20, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:26852309 original size:29 final size:29
Alignment explanation
Indices: 26852276--26852339 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
26852266 TAATCCACCA
26852276 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
26852305 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
26852335 CCCAA
1 CCCAA
26852340 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:26852313 original size:30 final size:30
Alignment explanation
Indices: 26852283--26852339 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
26852273 CCACCCAACT
26852283 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
26852312 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
26852340 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:26861712 original size:43 final size:43
Alignment explanation
Indices: 26861623--26861713 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 43
26861613 CTTACATGTT
* * * *
26861623 ATCACATATCGATGCCATTGTCCTAGACATGGTCTTATACGAA
1 ATCACATAACGATGCCAATGTCCCAGACATGGTCTTACACGAA
*
26861666 ATCATATAACGATGCCAATGTCCCAGACATGGTCTTACAC-ACA
1 ATCACATAACGATGCCAATGTCCCAGACATGGTCTTACACGA-A
26861709 ATCAC
1 ATCAC
26861714 GTCTCGTTAA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 1 0.02
43 40 0.98
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.26
Consensus pattern (43 bp):
ATCACATAACGATGCCAATGTCCCAGACATGGTCTTACACGAA
Found at i:26865721 original size:50 final size:50
Alignment explanation
Indices: 26865667--26865768 Score: 132
Period size: 50 Copynumber: 2.0 Consensus size: 50
26865657 TAACACCATG
* * *
26865667 TAAATACTTACCTATACAACCGAATATACAAGGTCCAATATATCATCTCA
1 TAAATACTTACATATACAACCGAATACACAAGGTCCAATATATCATCACA
*** * *
26865717 TAAATACTTACATATATGGCCGAATACACAAGGTTCATTATATCATCACA
1 TAAATACTTACATATACAACCGAATACACAAGGTCCAATATATCATCACA
26865767 TA
1 TA
26865769 TGGCCTAATA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (50 bp):
TAAATACTTACATATACAACCGAATACACAAGGTCCAATATATCATCACA
Found at i:26867766 original size:27 final size:26
Alignment explanation
Indices: 26867735--26867912 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
26867725 TAAATTGTAC
26867735 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
26867762 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
26867788 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
26867816 GGCACTAAGTGTGCGAGGTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
26867844 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
26867871 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
26867898 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26867913 GACTCAATAT
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 102 0.80
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:26867796 original size:54 final size:54
Alignment explanation
Indices: 26867735--26867912 Score: 200
Period size: 54 Copynumber: 3.3 Consensus size: 54
26867725 TAAATTGTAC
* **
26867735 AGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATT-GACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* ** *
26867790 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGGTTGACTATG-T
1 AGCACTAAGTGTGCG-ATTGACTATGTAGCACTAAGTGTGCGA-GTTGAATATGAT
* * *
26867844 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGA-TTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
*
26867898 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26867913 GACTCAATAT
Statistics
Matches: 105, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
54 60 0.57
55 45 0.43
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:26867851 original size:82 final size:81
Alignment explanation
Indices: 26867736--26867891 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 81
26867726 AAATTGTACA
* *
26867736 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
26867800 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
26867817 GCACTAAGTGTGCGAGGTT-GACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGT
1 GCACTAAGTGTGCGA--TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGT
*
26867881 GTGCGAGTTGA
64 GTGCGAATTGA
26867892 TTATATAGCA
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
81 15 0.23
82 48 0.73
83 3 0.05
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26867903 original size:82 final size:81
Alignment explanation
Indices: 26867732--26867912 Score: 213
Period size: 82 Copynumber: 2.2 Consensus size: 81
26867722 GATTAAATTG
* *
26867732 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26867797 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
26867813 TGCGGCACTAAGTGTGCGAGGTT-GACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCAC
1 TACAGCACTAAGTGTGCGA--TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCAC
* **
26867876 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
26867895 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26867913 GACTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 18 0.22
82 63 0.76
83 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26873188 original size:44 final size:44
Alignment explanation
Indices: 26873128--26873250 Score: 142
Period size: 44 Copynumber: 2.8 Consensus size: 44
26873118 ATATGTATTG
* * *
26873128 ATGCATGTCCCGGACATGTCTTACACTAGCACAAATCTTA-GCCA
1 ATGCATGTCCCAGACATGTCTTACACTGGCACAAATC-GAGGCCA
** *
26873172 ATGCATGTCCCAGACATGTCTTACACTGGCTATCCTTATCGAGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGGC-A--CAAATCGAGGCCA
26873219 ATGCATG-CCCAGACATGTCTTACACTGGCACA
1 ATGCATGTCCCAGACATGTCTTACACTGGCACA
26873251 CAAGAAATTC
Statistics
Matches: 68, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
43 1 0.01
44 28 0.41
45 2 0.03
46 23 0.34
47 14 0.21
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (44 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCACAAATCGAGGCCA
Found at i:26876230 original size:68 final size:64
Alignment explanation
Indices: 26876120--26876372 Score: 219
Period size: 68 Copynumber: 3.9 Consensus size: 64
26876110 ATACAGATGG
** * * * *
26876120 TATGTAGCTAGGTCACATGTTTGGTGCTGA-GTGCACATCATGT-GTAAAAGAGAGCTACGAGAC
1 TATGTAGCTAGGTCACATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTACGAG--
26876183 ATTA
62 A-TA
* *
26876187 TGATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGATACGAGATA
1 T-ATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* * * * *
26876252 TATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 TATGTAGCTAGGTCACATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
26876317 TA
63 TA
* * * *
26876319 AACTG--GCTAGGTTACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 TA-TGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
26876373 CAAAATTTTG
Statistics
Matches: 154, Mismatches: 24, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 25 0.16
65 3 0.02
66 22 0.14
67 33 0.21
68 50 0.32
69 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.25
Consensus pattern (64 bp):
TATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:26882934 original size:55 final size:55
Alignment explanation
Indices: 26882813--26882923 Score: 161
Period size: 55 Copynumber: 2.0 Consensus size: 55
26882803 AGCCCGTCTG
* *
26882813 CAACACTGACTTTAAAGCAAGGCCATGACACACGCCCGTGTGGTCTACCCGTGTA
1 CAACACTGACTTTAAAGCAAGGCCATGACACACACCCGTGTGGCCTACCCGTGTA
* **
26882868 CAACACTGACTTTATAA-CACGGCCATGACACACACCTTTGTGGCCTACCCGTGTA
1 CAACACTGACTTTA-AAGCAAGGCCATGACACACACCCGTGTGGCCTACCCGTGTA
26882923 C
1 C
26882924 TCAACTGACT
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
55 48 0.96
56 2 0.04
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.22
Consensus pattern (55 bp):
CAACACTGACTTTAAAGCAAGGCCATGACACACACCCGTGTGGCCTACCCGTGTA
Found at i:26884026 original size:47 final size:47
Alignment explanation
Indices: 26883824--26884141 Score: 258
Period size: 47 Copynumber: 6.7 Consensus size: 47
26883814 TGGATAAATT
* * *
26883824 GCCGATGCCATGTCCCAGACAAGGTCTCACACAGGCTATCATCATCGAG
1 GCCGATG-CATGTCCCAGAC-ATGTCTTACACTGGCTATCATCATCGAG
* * * * *
26883873 GCCGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCATATATAC-AT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCAT-CAT-CGAG
* * * *
26883923 GCTGATGCATGTCCCGGACATGTCTTACACTAGC-A-CGACTCTTC---
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATC-A-TCATCGAG
** *
26883967 GTTGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCATCGAG
* * *
26884014 GCCGATGCATGTCCCAGACATGTCTTACATTGGC-ACTCATC-TCTAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTA-TCATCATCGAG
* * * * *
26884060 GCCGATTCCATGTCCCAGACATTGTCTTACACTGGCTCTAATAAT-GTG
1 GCCGA-TGCATGTCCCAGACA-TGTCTTACACTGGCTATCATCATCGAG
*
26884108 GCCGATGCAAGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
26884142 ACACGAGAAA
Statistics
Matches: 219, Mismatches: 35, Indels: 33
0.76 0.12 0.11
Matches are distributed among these distances:
44 34 0.16
45 2 0.01
46 26 0.12
47 64 0.29
48 35 0.16
49 48 0.22
50 9 0.04
51 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCATCGAG
Found at i:26884115 original size:141 final size:140
Alignment explanation
Indices: 26883824--26884141 Score: 354
Period size: 141 Copynumber: 2.2 Consensus size: 140
26883814 TGGATAAATT
* * *
26883824 GCCGATGCCATGTCCCAGACAAGGTCTCACACAGGCTATCATCATCGAGGCCGATGCCATGTCCC
1 GCCGATG-CATGTCCCAGAC-ACGTCTTACACTGGCTATCATCATCGAGGCCGATGCCATGTCCC
* * * * *
26883889 AGACATGGTCTTATACTAGCTCTCATATATACATGCTGATGCATGTCCCGGACATGTCTTACACT
64 AGACATGGTCTTACACTAGCACTCATATATACA-GCCGATCCATGTCCCAGACATGTCTTACACT
* *
26883954 AGCACGACTCTTC
128 AGCACGAATATTC
**
26883967 GTTGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCCGATG-CATGTCCCAG
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCCGATGCCATGTCCCAG
* * * * *
26884031 ACAT-GTCTTACATTGGCACTCATCTCTAC-GCCGATTCCATGTCCCAGACATTGTCTTACACTG
66 ACATGGTCTTACACTAGCACTCATATATACAGCCGA-TCCATGTCCCAGACA-TGTCTTACACTA
* * *
26884094 GCTCTAATAATGTG
129 GCACGAAT-AT-TC
* *
26884108 GCCGATGCAAGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGC
26884142 ACACGAGAAA
Statistics
Matches: 147, Mismatches: 24, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
137 4 0.03
138 13 0.09
139 35 0.24
140 15 0.10
141 63 0.43
142 12 0.08
143 5 0.03
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (140 bp):
GCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCCGATGCCATGTCCCAG
ACATGGTCTTACACTAGCACTCATATATACAGCCGATCCATGTCCCAGACATGTCTTACACTAGC
ACGAATATTC
Found at i:26903730 original size:40 final size:40
Alignment explanation
Indices: 26903646--26903867 Score: 294
Period size: 40 Copynumber: 5.7 Consensus size: 40
26903636 TTGAATGATG
* * * *
26903646 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
26903686 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
26903726 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26903765 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26903805 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26903844 -CC-GGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26903868 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
37 20 0.12
38 2 0.01
39 37 0.22
40 98 0.59
41 8 0.05
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26903782 original size:79 final size:80
Alignment explanation
Indices: 26903646--26903867 Score: 294
Period size: 79 Copynumber: 2.8 Consensus size: 80
26903636 TTGAATGATG
* * * * *
26903646 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
*
26903709 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
26903726 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
*
26903790 GTGCGAGTTACTAAA
66 GTGCGAGATACTAAA
* *
26903805 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA-CC-GGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
26903867 G
66 G
26903868 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 11, Indels: 9
0.86 0.07 0.06
Matches are distributed among these distances:
77 20 0.16
78 3 0.02
79 62 0.48
80 43 0.34
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:26912710 original size:40 final size:40
Alignment explanation
Indices: 26912626--26912850 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
26912616 TTGAATGATG
* * * *
26912626 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
26912666 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26912706 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26912745 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26912785 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26912826 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26912851 AACGAGAGCT
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26912867 original size:119 final size:118
Alignment explanation
Indices: 26912626--26912882 Score: 281
Period size: 119 Copynumber: 2.2 Consensus size: 118
26912616 TTGAATGATG
* *
26912626 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
26912691 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAG-TACTAAA
* * * **
26912745 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
26912808 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-AGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTA-CTAAA
* *
26912864 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
26912883 TACGTGATTT
Statistics
Matches: 117, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
118 18 0.15
119 75 0.64
120 24 0.21
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (118 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTACTAAA
Found at i:26916502 original size:42 final size:42
Alignment explanation
Indices: 26916438--26916521 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
26916428 CGTACAGGGC
*
26916438 TTTTGGACGTCGTAACTCGGTCGAAACAAATTTGTAAGCATA
1 TTTTAGACGTCGTAACTCGGTCGAAACAAATTTGTAAGCATA
26916480 TTTTAGACGTCGTAACTCGGTCGAAACAAATTTGTAAGCATA
1 TTTTAGACGTCGTAACTCGGTCGAAACAAATTTGTAAGCATA
26916522 GCTTCCAAGC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (42 bp):
TTTTAGACGTCGTAACTCGGTCGAAACAAATTTGTAAGCATA
Found at i:26918355 original size:29 final size:28
Alignment explanation
Indices: 26918320--26918398 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
26918310 GGGTATTTTA
26918320 ACGATTTGGCTTTAGGCCATGCATATCGG
1 ACGATTTGGCTTT-GGCCATGCATATCGG
* *
26918349 ATGATTTGGCTTTGAGCCATGCATATTGG
1 ACGATTTGGCTTTG-GCCATGCATATCGG
*
26918378 ACGATTTGGCTTCGGGCCATG
1 ACGATTTGGCTT-TGGCCATG
26918399 ATAATAGTTC
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
28 1 0.02
29 42 0.95
30 1 0.02
ACGTcount: A:0.19, C:0.19, G:0.29, T:0.33
Consensus pattern (28 bp):
ACGATTTGGCTTTGGCCATGCATATCGG
Found at i:26926287 original size:16 final size:16
Alignment explanation
Indices: 26926266--26926300 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
26926256 ATGAATTAAG
26926266 TTATTCACCTATGAGC
1 TTATTCACCTATGAGC
26926282 TTATTCACCTATGAGC
1 TTATTCACCTATGAGC
26926298 TTA
1 TTA
26926301 CTAAGCTATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.26, C:0.23, G:0.11, T:0.40
Consensus pattern (16 bp):
TTATTCACCTATGAGC
Found at i:26926309 original size:16 final size:16
Alignment explanation
Indices: 26926272--26926319 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
26926262 TAAGTTATTC
* *
26926272 ACCTATGAGCTTATTC
1 ACCTATGAGCTTACTA
26926288 ACCTATGAGCTTACTA
1 ACCTATGAGCTTACTA
*
26926304 AGCTATGAAGCTTACT
1 ACCTATG-AGCTTACT
26926320 TTGTGTTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
16 20 0.71
17 8 0.29
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (16 bp):
ACCTATGAGCTTACTA
Found at i:26926523 original size:12 final size:12
Alignment explanation
Indices: 26926506--26926535 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
26926496 GGCTTGTAAA
26926506 TGATGTTAATAT
1 TGATGTTAATAT
26926518 TGATGTTAATAT
1 TGATGTTAATAT
26926530 TGATGT
1 TGATGT
26926536 GTGTTTGGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (12 bp):
TGATGTTAATAT
Found at i:26927400 original size:28 final size:28
Alignment explanation
Indices: 26927380--26927435 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
26927370 GATTTATGAG
26927380 AATGAATGTTTTATGTTTGATAAATGTA
1 AATGAATGTTTTATGTTTGATAAATGTA
26927408 AATGAATGTTTTATGTTTGATAAATGTA
1 AATGAATGTTTTATGTTTGATAAATGTA
26927436 TGCTATATGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.46
Consensus pattern (28 bp):
AATGAATGTTTTATGTTTGATAAATGTA
Found at i:26928496 original size:20 final size:20
Alignment explanation
Indices: 26928471--26928508 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
26928461 AAAGTGAGAA
*
26928471 TTTATTTTCTAAGTATAAAT
1 TTTATTTTCTAAGAATAAAT
*
26928491 TTTATTTTTTAAGAATAA
1 TTTATTTTCTAAGAATAA
26928509 CAAATTTTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.03, G:0.05, T:0.55
Consensus pattern (20 bp):
TTTATTTTCTAAGAATAAAT
Found at i:26932380 original size:30 final size:33
Alignment explanation
Indices: 26932344--26932421 Score: 99
Period size: 35 Copynumber: 2.4 Consensus size: 33
26932334 CATTCATTCA
26932344 TAATTTATTT-TTA-ATGCTTTA-TTTTTTATG
1 TAATTTATTTGTTATATGCTTTATTTTTTTATG
* *
26932374 TAATTTATTTGTTATGTGTGTTTTATTTTTTTATG
1 TAATTTATTTGTTA--TATGCTTTATTTTTTTATG
26932409 TAATTTATTTGTT
1 TAATTTATTTGTT
26932422 GTGTGTTTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
30 10 0.24
31 3 0.07
34 6 0.15
35 22 0.54
ACGTcount: A:0.21, C:0.01, G:0.10, T:0.68
Consensus pattern (33 bp):
TAATTTATTTGTTATATGCTTTATTTTTTTATG
Found at i:26932425 original size:33 final size:34
Alignment explanation
Indices: 26932361--26932431 Score: 119
Period size: 35 Copynumber: 2.1 Consensus size: 34
26932351 TTTTTAATGC
26932361 TTTATTTTTTATGTAATTTATTTGTTATGTGTGT
1 TTTATTTTTTATGTAATTTATTTGTTATGTGTGT
26932395 TTTATTTTTTTATGTAATTTATTTG-T-TGTGTGT
1 TTTA-TTTTTTATGTAATTTATTTGTTATGTGTGT
26932428 TTTA
1 TTTA
26932432 GGTTGGTTAG
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
33 11 0.31
34 5 0.14
35 20 0.56
ACGTcount: A:0.17, C:0.00, G:0.14, T:0.69
Consensus pattern (34 bp):
TTTATTTTTTATGTAATTTATTTGTTATGTGTGT
Found at i:26934379 original size:43 final size:43
Alignment explanation
Indices: 26934323--26934495 Score: 154
Period size: 43 Copynumber: 4.0 Consensus size: 43
26934313 AGCTCATACA
* * * *
26934323 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * * * * *
26934365 ATGCCACTGTCCCAGGCAAGGTCTTACACGAAATCGA-TTAACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATC-ACATATCG
* * *
26934408 ATGCCAATGTCCCAGACATGGTCTTACACATAATCTCA-ATCCA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT-CG
** * *
26934451 ATGTTAATGTCCCAGACATGGTCTTACATGTAATCACATCTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
26934494 AT
1 AT
26934496 AACCTAATGT
Statistics
Matches: 100, Mismatches: 26, Indels: 9
0.74 0.19 0.07
Matches are distributed among these distances:
42 6 0.06
43 92 0.92
44 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:26938038 original size:47 final size:48
Alignment explanation
Indices: 26937984--26938099 Score: 144
Period size: 47 Copynumber: 2.4 Consensus size: 48
26937974 CACAATCGAT
* *
26937984 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATC-CCG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTACG
* * * * * *
26938031 AAGTACCTACACCATAGTCCATAGCCAAATCAAGGTAACTCCTCTATG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTACG
*
26938079 AAATACCTATACCATGGCCCG
1 AAGTACCTATACCATGGCCCG
26938100 CAGTCAAGTT
Statistics
Matches: 55, Mismatches: 13, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
47 38 0.69
48 17 0.31
ACGTcount: A:0.34, C:0.30, G:0.15, T:0.22
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTACG
Found at i:26939950 original size:14 final size:14
Alignment explanation
Indices: 26939931--26939965 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
26939921 GACATTTTTT
*
26939931 TTCTAATGATACTA
1 TTCTAACGATACTA
26939945 TTCTAACGATACTA
1 TTCTAACGATACTA
*
26939959 TTTTAAC
1 TTCTAAC
26939966 ATTTAATTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.34, C:0.17, G:0.06, T:0.43
Consensus pattern (14 bp):
TTCTAACGATACTA
Found at i:26941232 original size:47 final size:48
Alignment explanation
Indices: 26941169--26941260 Score: 134
Period size: 48 Copynumber: 1.9 Consensus size: 48
26941159 CAACAATACA
*
26941169 ACATTAAAACACT-AAAATTGGAACAAAA-TTTGTAATATAAATTAAAT
1 ACATTAAAACACTAAAAATTCGAA-AAAACTTTGTAATATAAATTAAAT
* *
26941216 ACATTACAACATTAAAAATTCGAAAAAACTTTGTAATATAAATTA
1 ACATTAAAACACTAAAAATTCGAAAAAACTTTGTAATATAAATTA
26941261 GGCACATTGG
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
47 15 0.38
48 25 0.62
ACGTcount: A:0.54, C:0.10, G:0.05, T:0.30
Consensus pattern (48 bp):
ACATTAAAACACTAAAAATTCGAAAAAACTTTGTAATATAAATTAAAT
Found at i:26944107 original size:40 final size:41
Alignment explanation
Indices: 26943989--26944108 Score: 156
Period size: 40 Copynumber: 3.0 Consensus size: 41
26943979 ACTTGATATC
* * *
26943989 TCGCACACTAAGTGCCATACATAGCCGAAGCTATC-TCAAA
1 TCGCACACTAAGTGCCATAAATAGCCGAAGTTATCGTCGAA
* *
26944029 TCGCACACTAAGTGTCATATATAGCCGAAGTTAT-GTCGAA
1 TCGCACACTAAGTGCCATAAATAGCCGAAGTTATCGTCGAA
* *
26944069 TCGCACACTAAGTGCCACAAATAGCCG-ATTTATCGTCGAA
1 TCGCACACTAAGTGCCATAAATAGCCGAAGTTATCGTCGAA
26944109 CATATCTATG
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
39 5 0.07
40 65 0.93
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.23
Consensus pattern (41 bp):
TCGCACACTAAGTGCCATAAATAGCCGAAGTTATCGTCGAA
Found at i:26950687 original size:42 final size:42
Alignment explanation
Indices: 26950636--26950715 Score: 106
Period size: 42 Copynumber: 1.9 Consensus size: 42
26950626 CAGATGCCAA
** * *
26950636 GTTCTAGGCCGTGTTTCACACAAGACTGAGACACACGCACGT
1 GTTCTAGGCCACGTATCACACAAGACTAAGACACACGCACGT
* *
26950678 GTTCTAGGCCACGTATCACACACGGCTAAGACACACGC
1 GTTCTAGGCCACGTATCACACAAGACTAAGACACACGC
26950716 TCATGTCTCT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 32 1.00
ACGTcount: A:0.28, C:0.31, G:0.23, T:0.19
Consensus pattern (42 bp):
GTTCTAGGCCACGTATCACACAAGACTAAGACACACGCACGT
Found at i:26956444 original size:27 final size:27
Alignment explanation
Indices: 26956404--26956462 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
26956394 TTGGGAGTGT
*
26956404 TGGTGCCACCTATGGCATAGGCTTCAC
1 TGGTGCCACCTATGGCATAAGCTTCAC
*
26956431 TGGTGCCACTTATGGCATAAGCTTCAC
1 TGGTGCCACCTATGGCATAAGCTTCAC
26956458 TGGTG
1 TGGTG
26956463 TTGCCTCTGC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.19, C:0.25, G:0.27, T:0.29
Consensus pattern (27 bp):
TGGTGCCACCTATGGCATAAGCTTCAC
Found at i:26961425 original size:22 final size:22
Alignment explanation
Indices: 26961384--26961426 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
26961374 ATCATTATTC
*
26961384 TAAAATTTAAGAAAATATAAAT
1 TAAAATTTAAGAAAAGATAAAT
26961406 TAAAATTTAA-AAATAGATAAA
1 TAAAATTTAAGAAA-AGATAAA
26961427 AGTTCAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (22 bp):
TAAAATTTAAGAAAAGATAAAT
Found at i:26961444 original size:18 final size:18
Alignment explanation
Indices: 26961395--26961447 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
26961385 AAAATTTAAG
*
26961395 AAAATATAAATTAAAATTT
1 AAAA-ATAAATTAAAATTC
*
26961414 AAAAATAGA-TAAAAGTTC
1 AAAAATAAATTAAAA-TTC
26961432 AAAAA-AAATTAAAATT
1 AAAAATAAATTAAAATT
26961448 TATAAAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
17 9 0.31
18 16 0.55
19 4 0.14
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.28
Consensus pattern (18 bp):
AAAAATAAATTAAAATTC
Found at i:26961454 original size:18 final size:17
Alignment explanation
Indices: 26961402--26961455 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 17
26961392 AAGAAAATAT
26961402 AAATTAAAATTTAAAAA
1 AAATTAAAATTTAAAAA
* *
26961419 TAGA-TAAAAGTTCAAAAA
1 -AAATTAAAA-TTTAAAAA
26961437 AAATTAAAATTTATAAAA
1 AAATTAAAATTTA-AAAA
26961455 A
1 A
26961456 TATAGAAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
17 10 0.34
18 19 0.66
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.28
Consensus pattern (17 bp):
AAATTAAAATTTAAAAA
Found at i:26964884 original size:73 final size:73
Alignment explanation
Indices: 26964802--26965128 Score: 338
Period size: 73 Copynumber: 4.5 Consensus size: 73
26964792 TTAAATAATA
* * * * * *
26964802 TCTATCCCAACCTTTTTAAGGTTGCTTTAAACAGGTCAATCCCAACCTTTTTTAAAAGATACCTC
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTAAAAGTTGCCTT
26964867 AGACATGG
66 AGACATGG
* * *
26964875 TCTATCCCAACCTTTTTAAGGTTGCCTTAGAC-GAGTCTATTCCGACCTTTTTTAAAGGTTGCCT
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAGACAG-GTCTATCCCAACCTTTTTTAAAAGTTGCCT
26964939 TAGACATGG
65 TAGACATGG
* * * **
26964948 TCTATCCTAA-C-TATTAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTAATAGGTTGTTT
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTAA-AAGTTGCCT
26965011 TAGACAAT-G
65 TAGAC-ATGG
* * * * * *
26965020 TCGATCCCAACCTTTTTAAGGTTGCTTTAGACTGCTCTATCCCAATCGTTTTTAAAAGTTGCCTT
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTAAAAGTTGCCTT
* * *
26965085 AAACAAGA
66 AGACATGG
* ** * * *
26965093 ACTATATCGACCTTTTTAACGTTGTCTTAGACAGGT
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAGACAGGT
26965129 AACAACCTTT
Statistics
Matches: 208, Mismatches: 39, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
71 37 0.18
72 25 0.12
73 110 0.53
74 36 0.17
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.36
Consensus pattern (73 bp):
TCTATCCCAACCTTTTTAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTAAAAGTTGCCTT
AGACATGG
Found at i:26965059 original size:145 final size:144
Alignment explanation
Indices: 26964817--26965085 Score: 344
Period size: 145 Copynumber: 1.9 Consensus size: 144
26964807 CCCAACCTTT
* *
26964817 TTAAGGTTGCTTTAAACAGGTCAATCCCAACCTTTTTTAAAAGATACCTCAGACATGGTCTATCC
1 TTAAGGTTGCCTTAAACAGGTCAATCCCAACCTTTTTTAAAAGATACCTCAGACATGGTCGATCC
* * * * *
26964882 CAACCTTTTTAAGGTTGCCTTAGACGAGTCTATTCCGACCTTTTTTAAAGGTTGCCTTAGACATG
66 CAACCTTTTTAAGGTTGCCTTAGACGACTCTATCCCAACCGTTTTTAAAAGTTGCCTTAGACATG
26964947 GTCTATCCTAACTA
131 GTCTATCCTAACTA
* * * * *** *
26964961 TTAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTAATAGGTTGTTTTAGACAAT-GTCGAT
1 TTAAGGTTGCCTTAAACAGGTCAATCCCAACCTTTTTTAA-AAGATACCTCAGAC-ATGGTCGAT
* *
26965025 CCCAACCTTTTTAAGGTTGCTTTAGACTG-CTCTATCCCAATCGTTTTTAAAAGTTGCCTTA
64 CCCAACCTTTTTAAGGTTGCCTTAGAC-GACTCTATCCCAACCGTTTTTAAAAGTTGCCTTA
26965086 AACAAGAACT
Statistics
Matches: 105, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
144 37 0.35
145 65 0.62
146 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.37
Consensus pattern (144 bp):
TTAAGGTTGCCTTAAACAGGTCAATCCCAACCTTTTTTAAAAGATACCTCAGACATGGTCGATCC
CAACCTTTTTAAGGTTGCCTTAGACGACTCTATCCCAACCGTTTTTAAAAGTTGCCTTAGACATG
GTCTATCCTAACTA
Found at i:26969450 original size:6 final size:6
Alignment explanation
Indices: 26969439--26969475 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
26969429 CAAATCTAAA
*
26969439 AGGCAT AGGCAT AGGCAT AGGCAT AGGCAT ATGCAT A
1 AGGCAT AGGCAT AGGCAT AGGCAT AGGCAT AGGCAT A
26969476 CATGTATAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.35, C:0.16, G:0.30, T:0.19
Consensus pattern (6 bp):
AGGCAT
Found at i:26981166 original size:37 final size:37
Alignment explanation
Indices: 26981116--26981194 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
26981106 TTATTACGAA
* * *
26981116 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
26981153 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
26981190 GTCTT
1 GTCTT
26981195 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:26981577 original size:47 final size:47
Alignment explanation
Indices: 26981313--26981830 Score: 792
Period size: 47 Copynumber: 11.1 Consensus size: 47
26981303 CCCTTCGGGA
** * * * * * *
26981313 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
26981360 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26981406 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26981453 CTTAT-ACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26981499 CTTATCAC-TATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26981545 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26981592 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26981639 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26981686 CTTATCAC-CTATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACAC-ATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26981733 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26981780 CTTATCACACATATACACTTTCACATTCATCACATCGACCATTTGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
26981827 CTTA
1 CTTA
26981831 CTATCATTTC
Statistics
Matches: 446, Mismatches: 20, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
46 132 0.30
47 313 0.70
48 1 0.00
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26984619 original size:93 final size:93
Alignment explanation
Indices: 26984511--26984682 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
26984501 CGCCCATAAG
* * * *
26984511 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
26984576 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
26984604 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
26984669 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
26984683 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:26984679 original size:46 final size:46
Alignment explanation
Indices: 26984504--26984679 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
26984494 TGTAACCCGC
* * * *
26984504 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
26984550 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
26984600 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
26984643 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
26984680 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 2 0.02
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:26990888 original size:43 final size:43
Alignment explanation
Indices: 26990798--26990965 Score: 119
Period size: 43 Copynumber: 3.9 Consensus size: 43
26990788 ACCGAGATGT
* * * * * *
26990798 GATTACATGTAAGACCATGTCTAGAACATTGGCATTGTATTTT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATATC
26990841 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGT-TAATC
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAT-ATC
* * * * * * *
26990884 GATTATGTATAAGAACC-TGTCGGGGACAGTGACATTG-ATATGT
1 GATTACGTGTAAG-ACCATGTCTGGGACATTGGCATCGTATAT-C
* * * * *
26990927 GATAACATGTAAGACCATATCTGGGATA-TGGCATTGTAT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAT
26990966 GAGTTATGTA
Statistics
Matches: 98, Mismatches: 21, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
42 13 0.13
43 82 0.84
44 3 0.03
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATATC
Found at i:26993544 original size:6 final size:6
Alignment explanation
Indices: 26993533--26993569 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
26993523 AACATCTCAA
*
26993533 AGGCAT AGGCAT AGGCAT AGGCAT AGGCAT ATGCAT A
1 AGGCAT AGGCAT AGGCAT AGGCAT AGGCAT AGGCAT A
26993570 CATGTAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.35, C:0.16, G:0.30, T:0.19
Consensus pattern (6 bp):
AGGCAT
Found at i:26997026 original size:25 final size:25
Alignment explanation
Indices: 26996979--26997027 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
26996969 GTCAAGCCAC
* **
26996979 CAGAATTGTAGTTAAGCTGCTAGAA
1 CAGAATTGTAGTTAAACCACTAGAA
*
26997004 CAGATTTGTAGTTAAACCACTAGA
1 CAGAATTGTAGTTAAACCACTAGA
26997028 TAAGGCAACT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (25 bp):
CAGAATTGTAGTTAAACCACTAGAA
Found at i:26997986 original size:15 final size:15
Alignment explanation
Indices: 26997966--26997995 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26997956 ATGGAGGAAG
26997966 AAAAGAAGAAAACCA
1 AAAAGAAGAAAACCA
*
26997981 AAAAGAAGAATACCA
1 AAAAGAAGAAAACCA
26997996 GAGAAATTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.13, G:0.13, T:0.03
Consensus pattern (15 bp):
AAAAGAAGAAAACCA
Found at i:27021882 original size:18 final size:18
Alignment explanation
Indices: 27021841--27021883 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
27021831 AAACTTGGTC
*
27021841 CAAAATTTTAAAAAAATTT
1 CAAAA-TTTAAAAAAAATT
27021860 C-AAATTTAAAAAAAATT
1 CAAAATTTAAAAAAAATT
27021877 CAAAATT
1 CAAAATT
27021884 ACCCCACTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 13 0.59
18 8 0.36
19 1 0.05
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (18 bp):
CAAAATTTAAAAAAAATT
Found at i:27024756 original size:19 final size:19
Alignment explanation
Indices: 27024734--27024770 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
27024724 ATTTATTGAT
27024734 AAGTATATTATTACATGAA
1 AAGTATATTATTACATGAA
27024753 AAGTATATTATTACATGA
1 AAGTATATTATTACATGA
27024771 CTCAATCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.46, C:0.05, G:0.11, T:0.38
Consensus pattern (19 bp):
AAGTATATTATTACATGAA
Found at i:27035191 original size:21 final size:20
Alignment explanation
Indices: 27035163--27035202 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
27035153 AGATATAATA
27035163 GCCAAGCTTA-ATCATATTCG
1 GCCAAGCTTATAT-ATATTCG
27035183 GCCATAGCTTATATATATTC
1 GCCA-AGCTTATATATATTC
27035203 ACACATTCCG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 12 0.67
22 2 0.11
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.35
Consensus pattern (20 bp):
GCCAAGCTTATATATATTCG
Found at i:27040092 original size:40 final size:41
Alignment explanation
Indices: 27040010--27040229 Score: 269
Period size: 40 Copynumber: 5.6 Consensus size: 41
27040000 TATTCGAATG
* * *
27040010 ATATCCGGGCTAAG-TCCCGAGGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
*
27040050 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
*
27040090 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* *
27040130 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* * **
27040170 ATATCCGGGCTAAGA-CCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
27040209 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGATCCCGAAG
27040230 ATACTTGGGT
Statistics
Matches: 158, Mismatches: 15, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
37 1 0.01
38 13 0.08
39 16 0.10
40 125 0.79
41 3 0.02
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
Found at i:27043481 original size:42 final size:42
Alignment explanation
Indices: 27043434--27043536 Score: 127
Period size: 44 Copynumber: 2.4 Consensus size: 42
27043424 TCGCAGATAG
* *
27043434 GGTCTTACACAAAATCAGATA-CGATACCGATGTCCCAGACTT
1 GGTCTTACACAAAATCAGA-AGCGATACCAATGTCCCAGACGT
* *
27043476 GGTCTTACACATAAAACAGAAGTCGATGCCAATGTCCCAGACGT
1 GGTCTTACACA-AAATCAGAAG-CGATACCAATGTCCCAGACGT
*
27043520 GGTCTTACACGAAATCA
1 GGTCTTACACAAAATCA
27043537 CATATCAATC
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
42 12 0.23
43 12 0.23
44 28 0.54
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.22
Consensus pattern (42 bp):
GGTCTTACACAAAATCAGAAGCGATACCAATGTCCCAGACGT
Found at i:27058301 original size:17 final size:18
Alignment explanation
Indices: 27058272--27058306 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
27058262 TTTGTGGACT
27058272 TAATTTAGTAAAAAGTAC
1 TAATTTAGTAAAAAGTAC
27058290 TAATTT-GTAAAAAGTAC
1 TAATTTAGTAAAAAGTAC
27058307 AAAACTTAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.49, C:0.06, G:0.11, T:0.34
Consensus pattern (18 bp):
TAATTTAGTAAAAAGTAC
Found at i:27061039 original size:15 final size:15
Alignment explanation
Indices: 27061011--27061044 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
27061001 GTAATAGATG
*
27061011 TGTGGATGACTTGGT
1 TGTGGATGAATTGGT
*
27061026 TGTGGTTGAATTGGT
1 TGTGGATGAATTGGT
27061041 TGTG
1 TGTG
27061045 TGTATATGCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.03, G:0.41, T:0.44
Consensus pattern (15 bp):
TGTGGATGAATTGGT
Found at i:27067716 original size:42 final size:42
Alignment explanation
Indices: 27067657--27067774 Score: 137
Period size: 43 Copynumber: 2.8 Consensus size: 42
27067647 TAGAGTTAGT
*
27067657 TAAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
1 TAAGATTACGTGTAAGACTATATCTGGGATATGGCATCGATA
* * * *
27067699 TAAGATTTCGTGTAAGACTATAGCTAGGCTATTGGCATCGATA
1 TAAGATTACGTGTAAGACTATATCTGGGATA-TGGCATCGATA
* * * * *
27067742 TGAGATCACATGTAAGACTATATTTGGTATATG
1 TAAGATTACGTGTAAGACTATATCTGGGATATG
27067775 ACATTAGTAT
Statistics
Matches: 61, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
42 28 0.46
43 33 0.54
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32
Consensus pattern (42 bp):
TAAGATTACGTGTAAGACTATATCTGGGATATGGCATCGATA
Done.