Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 94 of 250
Found at i:30491866 original size:27 final size:27
Alignment explanation
Indices: 30491828--30491881 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
30491818 CTCATCATCT
30491828 GGAGAAAGGCTTCCCGAGCCCCTTCTC
1 GGAGAAAGGCTTCCCGAGCCCCTTCTC
30491855 GGAGAAAGGCTTCCCGAGCCCCTTCTC
1 GGAGAAAGGCTTCCCGAGCCCCTTCTC
30491882 CTCCTCTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.19, C:0.37, G:0.26, T:0.19
Consensus pattern (27 bp):
GGAGAAAGGCTTCCCGAGCCCCTTCTC
Found at i:30500293 original size:28 final size:28
Alignment explanation
Indices: 30500261--30500316 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
30500251 AACTTCCTAA
30500261 ATGATAAGTGAAATTCTTGAATTGGAGT
1 ATGATAAGTGAAATTCTTGAATTGGAGT
* *
30500289 ATGATGAGTGGAATTCTTGAATTGGAGT
1 ATGATAAGTGAAATTCTTGAATTGGAGT
30500317 TATGGAGACT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.32, C:0.04, G:0.29, T:0.36
Consensus pattern (28 bp):
ATGATAAGTGAAATTCTTGAATTGGAGT
Found at i:30500558 original size:6 final size:6
Alignment explanation
Indices: 30500547--30500607 Score: 65
Period size: 6 Copynumber: 10.3 Consensus size: 6
30500537 CTTAAGGATG
* *
30500547 AAATAA AAAT-- AAATTA AAATAA AAAGT-A AAATAA AAGTAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAA-TAA AAATAA AAATAA AAATAA
30500593 AAATAA TAAATAA AA
1 AAATAA -AAATAA AA
30500608 GTCTTTAATC
Statistics
Matches: 47, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
4 4 0.09
5 1 0.02
6 35 0.74
7 7 0.15
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (6 bp):
AAATAA
Found at i:30500565 original size:10 final size:10
Alignment explanation
Indices: 30500547--30500607 Score: 52
Period size: 10 Copynumber: 5.8 Consensus size: 10
30500537 CTTAAGGATG
30500547 AAATAAAAAT
1 AAATAAAAAT
*
30500557 AAATTAAAAT
1 AAATAAAAAT
*
30500567 AAAAAGTAAAAT
1 AAATA--AAAAT
30500579 AAAAGTAAAAAT
1 -AAA-TAAAAAT
*
30500591 AAA-AATAAT
1 AAATAAAAAT
30500600 AAATAAAA
1 AAATAAAA
30500608 GTCTTTAATC
Statistics
Matches: 40, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
9 8 0.20
10 15 0.38
11 3 0.08
12 10 0.25
13 3 0.08
14 1 0.03
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (10 bp):
AAATAAAAAT
Found at i:30500598 original size:18 final size:16
Alignment explanation
Indices: 30500547--30500594 Score: 69
Period size: 17 Copynumber: 2.9 Consensus size: 16
30500537 CTTAAGGATG
*
30500547 AAATAAAAATAAATTA
1 AAATAAAAATAAAATA
30500563 AAATAAAAAGTAAAATA
1 AAATAAAAA-TAAAATA
30500580 AAAGTAAAAATAAAA
1 AAA-TAAAAATAAAA
30500595 ATAATAAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 9 0.31
17 14 0.48
18 6 0.21
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (16 bp):
AAATAAAAATAAAATA
Found at i:30505840 original size:41 final size:41
Alignment explanation
Indices: 30505783--30505860 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 41
30505773 GCAAGACCTG
30505783 GATGTCGAACACAAAGGAACTAAAAGTACTAGTATTAACTT
1 GATGTCGAACACAAAGGAACTAAAAGTACTAGTATTAACTT
* *
30505824 GATGTCGAACCCAAAGGAACTAAAAGTACTATTATTA
1 GATGTCGAACACAAAGGAACTAAAAGTACTAGTATTA
30505861 GCTTTCTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.44, C:0.15, G:0.17, T:0.24
Consensus pattern (41 bp):
GATGTCGAACACAAAGGAACTAAAAGTACTAGTATTAACTT
Found at i:30513739 original size:53 final size:54
Alignment explanation
Indices: 30513693--30513847 Score: 135
Period size: 53 Copynumber: 2.9 Consensus size: 54
30513683 TTTTACCCTA
30513693 CAGGGGT-CTTCAGTAATTTTACAAACGAGGGGTATTTCGATAATTTTA-CAAAT
1 CAGGGGTGCTTCAGTAATTTTACAAAC-AGGGGTATTTCGATAATTTTACCAAAT
** * * * *
30513746 TGGGGGTGTTTCAGTAATTTTACAAACCGGGGTATTTTGATAACTTTA-CAAAT
1 CAGGGGTGCTTCAGTAATTTTACAAACAGGGGTATTTCGATAATTTTACCAAAT
* *
30513799 C-GAGG-GCATTTC-GATAATTTTACAAATTAGGGGTATTTC-AGTAATTTTA
1 CAGGGGTGC--TTCAG-TAATTTTACAAA-CAGGGGTATTTCGA-TAATTTTA
30513848 AATAGTTTGG
Statistics
Matches: 83, Mismatches: 13, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
51 1 0.01
52 4 0.05
53 44 0.53
54 34 0.41
ACGTcount: A:0.30, C:0.12, G:0.21, T:0.37
Consensus pattern (54 bp):
CAGGGGTGCTTCAGTAATTTTACAAACAGGGGTATTTCGATAATTTTACCAAAT
Found at i:30513740 original size:27 final size:27
Alignment explanation
Indices: 30513706--30513847 Score: 141
Period size: 27 Copynumber: 5.3 Consensus size: 27
30513696 GGGTCTTCAG
30513706 TAATTTTACAAACGAGGGGTATTTCGA
1 TAATTTTACAAACGAGGGGTATTTCGA
* *
30513733 TAATTTTACAAATTG-GGGGTGTTTC-A
1 TAATTTTACAAA-CGAGGGGTATTTCGA
* *
30513759 GTAATTTTACAAAC-CGGGGTATTTTGA
1 -TAATTTTACAAACGAGGGGTATTTCGA
* *
30513786 TAACTTTACAAATCGA-GGGCATTTCGA
1 TAATTTTACAAA-CGAGGGGTATTTCGA
**
30513813 TAATTTTACAAATTAGGGGTATTTC-A
1 TAATTTTACAAACGAGGGGTATTTCGA
30513839 GTAATTTTA
1 -TAATTTTA
30513848 AATAGTTTGG
Statistics
Matches: 94, Mismatches: 13, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
26 22 0.23
27 71 0.76
28 1 0.01
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.38
Consensus pattern (27 bp):
TAATTTTACAAACGAGGGGTATTTCGA
Found at i:30517081 original size:40 final size:40
Alignment explanation
Indices: 30516999--30517192 Score: 178
Period size: 40 Copynumber: 4.9 Consensus size: 40
30516989 TATTCGAATG
* * * * *
30516999 ATATCCGGGCTAAGTCCCGAAGG-ATTTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCAAAGGCA-TTTGTGCGAGCGACT
* ** *
30517039 ATATCCGGACTAAGATTCAAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAG-CGACT
* *
30517079 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGCGACT
* * * * * *
30517119 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGCGACT
* *
30517159 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAG
1 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAG
30517193 TGGTTATATC
Statistics
Matches: 130, Mismatches: 21, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
39 8 0.06
40 119 0.92
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGCGACT
Found at i:30517132 original size:80 final size:81
Alignment explanation
Indices: 30516999--30517182 Score: 241
Period size: 80 Copynumber: 2.3 Consensus size: 81
30516989 TATTCGAATG
* * *
30516999 ATATCCGGGCTAAGTCCCGAAGG-ATTTTATGCTAGTGACTATATCCGGACTAAGAT-TCAAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTTATGCTAGCGACTATATCCGGACTAAG-TCCCAAAGG
* *
30517062 CATTTGTGCGAGTTG-CT
65 CATTTATGCGAG-TGACC
* * *
30517079 ATATCCGGGCTAAGACCCGAAGGCA-TTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTTATGCTAGCGACTATATCCGGACTAAGTCCCAAAGGC
*
30517143 ATTTATGCTAGTGACC
66 ATTTATGCGAGTGACC
30517159 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
30517183 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
79 3 0.03
80 88 0.96
81 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTTATGCTAGCGACTATATCCGGACTAAGTCCCAAAGGC
ATTTATGCGAGTGACC
Found at i:30526911 original size:40 final size:41
Alignment explanation
Indices: 30526850--30527033 Score: 238
Period size: 40 Copynumber: 4.6 Consensus size: 41
30526840 TATTCGAATG
30526850 ATATCCGGGCTAAG-TCCCGAAGG-ATTTTATGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCA-TTTATGCTAGTGACT
* * * *
30526890 ATATCCGGACTAAGAT-TCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTATGCTAG-TGACT
* *
30526930 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTATGCTAGTGACT
*
30526970 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGATCCCGAAGGCATTTATGCTAGTGACT
30527010 ATATCCGGGCTAAGA-CCCGAAGGC
1 ATATCCGGGCTAAGATCCCGAAGGC
30527034 CTTGTGCGAG
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 1 0.01
40 121 0.96
41 4 0.03
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTTATGCTAGTGACT
Found at i:30529218 original size:20 final size:21
Alignment explanation
Indices: 30529180--30529218 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
30529170 AGTTTATTTA
30529180 TGTTATAATTGTTGCAAATTG
1 TGTTATAATTGTTGCAAATTG
30529201 TGTT-TAATT-TTGCTAAAT
1 TGTTATAATTGTTGC-AAAT
30529219 CTATTCCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.24
20 9 0.53
21 4 0.24
ACGTcount: A:0.28, C:0.05, G:0.15, T:0.51
Consensus pattern (21 bp):
TGTTATAATTGTTGCAAATTG
Found at i:30531279 original size:42 final size:43
Alignment explanation
Indices: 30531176--30531280 Score: 124
Period size: 43 Copynumber: 2.5 Consensus size: 43
30531166 CAATGCCAAC
* * * * *
30531176 GTCCCAGACGTGGTCTTACATGTAGTCAAATATCGATGCCACT
1 GTCCCAGACATGGTCTTACATGAAATCAAATATCAATACCACT
* *
30531219 ATCCCAGACAGGGTCTTACATGAAATCAAATA-CAATACCGA-T
1 GTCCCAGACATGGTCTTACATGAAATCAAATATCAATACC-ACT
30531261 GTCCCAGACATGGTCTTACA
1 GTCCCAGACATGGTCTTACA
30531281 CATAAATCAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
42 24 0.46
43 28 0.54
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACATGAAATCAAATATCAATACCACT
Found at i:30544930 original size:19 final size:20
Alignment explanation
Indices: 30544906--30544943 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
30544896 GGTACCACCA
30544906 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
30544925 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
30544944 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:30545332 original size:93 final size:93
Alignment explanation
Indices: 30545173--30545343 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
30545163 GCCCCTAAGT
* *
30545173 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
30545238 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
30545266 GAACTCGGACTGAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
30545331 CGAGTTCGGATGC
66 CGAGTTCGGATGC
30545344 TCAATCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:30545340 original size:46 final size:46
Alignment explanation
Indices: 30545168--30545340 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
30545158 AACCCGCCCC
* * * *
30545168 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
30545214 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* * *
30545262 TCA-CGAACTCGGACTGAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
30545307 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
30545341 TGCTCAATCA
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 59 0.56
47 28 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:30557040 original size:18 final size:21
Alignment explanation
Indices: 30557005--30557046 Score: 63
Period size: 18 Copynumber: 2.1 Consensus size: 21
30556995 AATTTTTTCC
30557005 TCTTCTTTCTTCCGTTCTTCA
1 TCTTCTTTCTTCCGTTCTTCA
30557026 TCTTC-TTC-TCC-TTCTTCA
1 TCTTCTTTCTTCCGTTCTTCA
30557044 TCT
1 TCT
30557047 AGGTAACTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 10 0.48
19 3 0.14
20 3 0.14
21 5 0.24
ACGTcount: A:0.05, C:0.36, G:0.02, T:0.57
Consensus pattern (21 bp):
TCTTCTTTCTTCCGTTCTTCA
Found at i:30558670 original size:20 final size:20
Alignment explanation
Indices: 30558645--30558684 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
30558635 TATTATTCTG
30558645 ATGTTTTCATGGTTTATAAA
1 ATGTTTTCATGGTTTATAAA
*
30558665 ATGTTTTCATGGTTTCTAAA
1 ATGTTTTCATGGTTTATAAA
30558685 CTTATAAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.07, G:0.15, T:0.50
Consensus pattern (20 bp):
ATGTTTTCATGGTTTATAAA
Found at i:30564162 original size:21 final size:22
Alignment explanation
Indices: 30564115--30564163 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
30564105 TCCTAGGATG
*
30564115 TAAATTGAATCCAATTGAATAT
1 TAAATTGAATCAAATTGAATAT
*
30564137 GAAATTGAAT-AAATTG-ATGAT
1 TAAATTGAATCAAATTGAAT-AT
30564158 TAAATT
1 TAAATT
30564164 CATTTATATA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 2 0.09
21 12 0.52
22 9 0.39
ACGTcount: A:0.47, C:0.04, G:0.12, T:0.37
Consensus pattern (22 bp):
TAAATTGAATCAAATTGAATAT
Found at i:30567835 original size:27 final size:25
Alignment explanation
Indices: 30567772--30567835 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
30567762 TGACCCATAT
* *
30567772 CTCGTGTGAGCAGGCCCATTTATAG
1 CTCGTGTGAGCAGACCCATTTACAG
* *
30567797 CTCATGTAAGCAGACCCATTTTCACAG
1 CTCGTGTGAGCAGACCCA-TTT-ACAG
30567824 CTCGTGTGAGCA
1 CTCGTGTGAGCA
30567836 TTTTGATTTA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
25 15 0.48
26 3 0.10
27 13 0.42
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (25 bp):
CTCGTGTGAGCAGACCCATTTACAG
Found at i:30574335 original size:46 final size:44
Alignment explanation
Indices: 30574284--30574460 Score: 167
Period size: 46 Copynumber: 3.9 Consensus size: 44
30574274 ATGGTTGAGC
**
30574284 ATCCGAACTCGTTGAGTTGAGTTTGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* *** * *
30574328 ATGTCCGAACTCGTTGAGTTGAGTTCGAGTTCGAGAGATGTAACTAG-GC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGA
*
30574377 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A
* * *
30574422 CACCCGAGCTCGTTGAATTGAGTCCGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
30574461 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 15, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (44 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:30574443 original size:93 final size:93
Alignment explanation
Indices: 30574282--30574452 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
30574272 GGATGGTTGA
** *** *
30574282 GCATCCGAACTCGTTGAGTTGAGTTTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAAT
*
30574347 TGAGTTCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
30574375 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAAT
30574440 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
30574453 ACTTATGGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAAT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:30577407 original size:15 final size:15
Alignment explanation
Indices: 30577387--30577442 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
30577377 GTATCTTGGG
30577387 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
30577402 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
30577417 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
30577432 TTTCTTTATTC
1 TTTCTTTATTC
30577443 GGTTTCCTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.05
15 33 0.89
16 2 0.05
ACGTcount: A:0.12, C:0.16, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:30579878 original size:46 final size:45
Alignment explanation
Indices: 30579828--30579995 Score: 231
Period size: 46 Copynumber: 3.8 Consensus size: 45
30579818 TGGTTGAGCA
*
30579828 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-AAATG
30579874 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAATG
* * *
30579919 TCTGAACTCGTTGAGTTGAGTCCGAGTTCA--GA--GATGTAA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAATG
*
30579958 TCGCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
30579996 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 7, Indels: 12
0.85 0.05 0.09
Matches are distributed among these distances:
39 2 0.02
40 26 0.24
41 6 0.05
42 1 0.01
43 1 0.01
44 1 0.01
45 33 0.30
46 40 0.36
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAATG
Found at i:30583556 original size:49 final size:49
Alignment explanation
Indices: 30583484--30583616 Score: 212
Period size: 49 Copynumber: 2.7 Consensus size: 49
30583474 TGAGGTCACG
*
30583484 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACTGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCA
** *
30583533 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCA
* *
30583582 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTG
30583617 ATAGCTTCGG
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 76 1.00
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.32
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCA
Found at i:30586641 original size:15 final size:15
Alignment explanation
Indices: 30586623--30586676 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
30586613 GTATCTTGGG
30586623 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
30586638 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
30586653 TTT-TGCTATCTTGGA
1 TTTCT-TTATCCTGGA
30586668 TTTCTTTAT
1 TTTCTTTAT
30586677 TCGGTTTTTC
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
14 1 0.03
15 28 0.93
16 1 0.03
ACGTcount: A:0.11, C:0.15, G:0.15, T:0.59
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:30589283 original size:49 final size:49
Alignment explanation
Indices: 30589152--30589284 Score: 203
Period size: 49 Copynumber: 2.7 Consensus size: 49
30589142 TGAGGTCATG
* *
30589152 TGTGTAGTACTAAGTACAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* **
30589201 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTTTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* *
30589250 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
30589285 AATAGCTTCG
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 76 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:30590862 original size:21 final size:22
Alignment explanation
Indices: 30590831--30590878 Score: 89
Period size: 21 Copynumber: 2.2 Consensus size: 22
30590821 ATTTTGTAAG
30590831 TTTTGTGAGAAACATAATGCTA
1 TTTTGTGAGAAACATAATGCTA
30590853 TTTT-TGAGAAACATAATGCTA
1 TTTTGTGAGAAACATAATGCTA
30590874 TTTTG
1 TTTTG
30590879 GTATACTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 21 0.84
22 4 0.16
ACGTcount: A:0.33, C:0.08, G:0.17, T:0.42
Consensus pattern (22 bp):
TTTTGTGAGAAACATAATGCTA
Found at i:30594283 original size:43 final size:41
Alignment explanation
Indices: 30594126--30594284 Score: 106
Period size: 42 Copynumber: 3.8 Consensus size: 41
30594116 ACACATATCG
* * * * *
30594126 TACAATGCCAACGTCCCAGACATAGTCTTACATGCCATCACA
1 TACAATGCCAACGTCCCAAACATGGTCTTACACG-AATCAAA
* * * *
30594168 TATC-ATGTC-ACTATCCCAGACAGGGTCTTACACGAATCAAA
1 TA-CAATGCCAAC-GTCCCAAACATGGTCTTACACGAATCAAA
* * * * * *
30594209 TACGATGCTAATGTCCCAGACATGGTTTTACACGTAATCACA
1 TACAATGCCAACGTCCCAAACATGGTCTTACACG-AATCAAA
**
30594251 TATCAATGCCAACGTCCCAAATGTGGTCTTACAC
1 TA-CAATGCCAACGTCCCAAACATGGTCTTACAC
30594285 AAGAACACAT
Statistics
Matches: 90, Mismatches: 21, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
40 1 0.01
41 31 0.34
42 33 0.37
43 25 0.28
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.25
Consensus pattern (41 bp):
TACAATGCCAACGTCCCAAACATGGTCTTACACGAATCAAA
Found at i:30596228 original size:29 final size:29
Alignment explanation
Indices: 30596194--30596253 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
30596184 TTATATCCAC
*
30596194 ATGGCCCCTTAGGCCCAAATCACAGTTAT
1 ATGGCCACTTAGGCCCAAATCACAGTTAT
* *
30596223 ATGGCCATTTAGGCCCAAATCACATTTAT
1 ATGGCCACTTAGGCCCAAATCACAGTTAT
30596252 AT
1 AT
30596254 TCATGATCAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (29 bp):
ATGGCCACTTAGGCCCAAATCACAGTTAT
Found at i:30596486 original size:16 final size:16
Alignment explanation
Indices: 30596465--30596516 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
30596455 ATGGCCATAC
*
30596465 TTTCAACTTTTTGGCA
1 TTTCAACTTTTCGGCA
30596481 TTTCAACTTTTCGGCA
1 TTTCAACTTTTCGGCA
*
30596497 TTTCAGCTTTTCGGCA
1 TTTCAACTTTTCGGCA
30596513 TTTC
1 TTTC
30596517 GGCATTTTGG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.15, C:0.23, G:0.13, T:0.48
Consensus pattern (16 bp):
TTTCAACTTTTCGGCA
Found at i:30596500 original size:8 final size:8
Alignment explanation
Indices: 30596489--30596523 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
30596479 CATTTCAACT
30596489 TTTCGGCA
1 TTTCGGCA
* *
30596497 TTTCAGCT
1 TTTCGGCA
30596505 TTTCGGCA
1 TTTCGGCA
30596513 TTTCGGCA
1 TTTCGGCA
30596521 TTT
1 TTT
30596524 TGGGATTTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.11, C:0.23, G:0.20, T:0.46
Consensus pattern (8 bp):
TTTCGGCA
Found at i:30600801 original size:29 final size:29
Alignment explanation
Indices: 30600766--30600825 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
30600756 TTATATTCAC
*
30600766 ATGGCCCATTATGCCCAAATCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
*
30600795 ATGGCCCTTTAGGCCCAAATCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
30600824 AT
1 AT
30600826 TCATGCTCAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.32
Consensus pattern (29 bp):
ATGGCCCATTAGGCCCAAATCACATTTAT
Found at i:30601072 original size:16 final size:17
Alignment explanation
Indices: 30601039--30601083 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
30601029 GTAGCCAAAC
30601039 TTTCAGC-TTTCGGACA
1 TTTCAGCTTTTCGGACA
**
30601055 TTTTGGCTTTTCGG-CA
1 TTTCAGCTTTTCGGACA
30601071 TTTCAGCTTTTCG
1 TTTCAGCTTTTCG
30601084 AAATTTCGGC
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
16 18 0.75
17 6 0.25
ACGTcount: A:0.11, C:0.22, G:0.20, T:0.47
Consensus pattern (17 bp):
TTTCAGCTTTTCGGACA
Found at i:30603637 original size:45 final size:46
Alignment explanation
Indices: 30603570--30603659 Score: 112
Period size: 45 Copynumber: 2.0 Consensus size: 46
30603560 TATATATACA
* * *
30603570 CATCTCATACATTTCTCACATTAGCCATT-TGCTTTACCACATATC
1 CATCTCATACAATTCTCACATTAACCATTCGGCTTTACCACATATC
* *
30603615 CATCTCATACACATT-TCGCATTAACCATTCGGCTTTCCCACATAT
1 CATCTCATACA-ATTCTCACATTAACCATTCGGCTTTACCACATAT
30603660 ATACACTTCC
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
45 23 0.61
46 15 0.39
ACGTcount: A:0.27, C:0.32, G:0.06, T:0.36
Consensus pattern (46 bp):
CATCTCATACAATTCTCACATTAACCATTCGGCTTTACCACATATC
Found at i:30603750 original size:22 final size:22
Alignment explanation
Indices: 30603676--30603751 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
30603666 TTCCACGTTC
*
30603676 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGACCTT
*
30603698 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGACCTT
30603722 CATCACATTGGCCATTCGACCTT
1 -ATCACATTGGCCATTCGACCTT
30603745 ATCACAT
1 ATCACAT
30603752 ATATACATGT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 13 0.31
23 12 0.29
24 11 0.26
25 6 0.14
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGACCTT
Found at i:30603869 original size:23 final size:23
Alignment explanation
Indices: 30603796--30603869 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 23
30603786 GGTCTTATCA
30603796 CACAAATGCATGTTCACATTCAT
1 CACAAATGCATGTTCACATTCAT
* * ** *
30603819 CACATTATCCAT-TTGGCCTTAGCA-
1 CACA-AATGCATGTTCACATT--CAT
30603843 CACAAATGCATGTTCACATTCAT
1 CACAAATGCATGTTCACATTCAT
30603866 CACA
1 CACA
30603870 TTTGTCATTC
Statistics
Matches: 36, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
22 2 0.06
23 18 0.50
24 14 0.39
25 2 0.06
ACGTcount: A:0.32, C:0.28, G:0.09, T:0.30
Consensus pattern (23 bp):
CACAAATGCATGTTCACATTCAT
Found at i:30603888 original size:47 final size:47
Alignment explanation
Indices: 30603673--30603886 Score: 311
Period size: 47 Copynumber: 4.6 Consensus size: 47
30603663 CACTTCCACG
*
30603673 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
* * * *
30603720 TTCATCACATTGGCCATTCGACCTTATCACATATATACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
*
30603767 TTCATCACATTGGCCATTCGGTCTTATCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
** * *
30603814 TTCATCACATTATCCATTTGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
* * *
30603861 TTCATCACATTTGTCATTCGGTCTTA
1 TTCATCACATTGGCCATTCGGCCTTA
30603887 GCTCATATAT
Statistics
Matches: 149, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 149 1.00
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.34
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
Found at i:30603906 original size:47 final size:47
Alignment explanation
Indices: 30603673--30603917 Score: 301
Period size: 47 Copynumber: 5.2 Consensus size: 47
30603663 CACTTCCACG
*
30603673 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATACATGTTCACA
* *
30603720 TTCATCACATTGGCCATTCGACCTTATCACATATATACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATACATGTTCACA
* * *
30603767 TTCATCACATTGGCCATTCGGTCTTATCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATACATGTTCACA
** * * * *
30603814 TTCATCACATTATCCATTTGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATACATGTTCACA
* * * * * * **
30603861 TTCATCACATTTGTCATTCGGTCTTAGCTCATATATACACATTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATACATGTTCACA
*
30603908 TCCATCACAT
1 TTCATCACAT
30603918 AAAATCCTAA
Statistics
Matches: 173, Mismatches: 25, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 173 1.00
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.33
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACACATATACATGTTCACA
Found at i:30606851 original size:51 final size:51
Alignment explanation
Indices: 30606774--30606895 Score: 199
Period size: 51 Copynumber: 2.4 Consensus size: 51
30606764 TGATGAAAAA
* *
30606774 AAAAAGAAAGAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAG
1 AAAAAGAAAGAAAAAAAGCTCACATGTTGTTATTGGCCGAATAGAAGAAAG
*
30606825 AAAAAGAAAGATAAAAAGCTCACATGTTGTTATTGGCCGAATAGAAGAAAG
1 AAAAAGAAAGAAAAAAAGCTCACATGTTGTTATTGGCCGAATAGAAGAAAG
* *
30606876 AAAAAGAAGGAAAAAGAGCT
1 AAAAAGAAAGAAAAAAAGCT
30606896 TTGAGGAAAT
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 65 1.00
ACGTcount: A:0.51, C:0.10, G:0.22, T:0.17
Consensus pattern (51 bp):
AAAAAGAAAGAAAAAAAGCTCACATGTTGTTATTGGCCGAATAGAAGAAAG
Found at i:30608128 original size:40 final size:40
Alignment explanation
Indices: 30608023--30608189 Score: 234
Period size: 40 Copynumber: 4.2 Consensus size: 40
30608013 GGATTGATAA
* * *
30608023 CCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
30608063 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
30608102 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
30608142 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
30608182 CC-GGCTAA
1 CCGGGCTAA
30608190 ACTCTGAAGG
Statistics
Matches: 117, Mismatches: 7, Indels: 7
0.89 0.05 0.05
Matches are distributed among these distances:
39 42 0.36
40 75 0.64
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:30608188 original size:79 final size:79
Alignment explanation
Indices: 30608023--30608189 Score: 232
Period size: 79 Copynumber: 2.1 Consensus size: 79
30608013 GGATTGATAA
* * *
30608023 CCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATTTGA
30608088 GCGAGTTACTATAT
66 GCGAGTTACTATAT
* *
30608102 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGCATTT
*
30608166 GAGCTAG-TAGCTATAT
64 GAGCGAGTTA-CTATAT
30608182 CC-GGCTAA
1 CCGGGCTAA
30608190 ACTCTGAAGG
Statistics
Matches: 79, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
78 2 0.03
79 51 0.65
80 26 0.33
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATTTGA
GCGAGTTACTATAT
Found at i:30614821 original size:49 final size:50
Alignment explanation
Indices: 30614750--30614868 Score: 195
Period size: 49 Copynumber: 2.4 Consensus size: 50
30614740 TGATGAAAAA
30614750 AAAAGAAAGAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAG
1 AAAAGAAAGAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAG
*
30614800 AAAAGAAA-AAAAAAAGCTCTCATGTTGTTCTTGGCCGAATCGAAGAAAG
1 AAAAGAAAGAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAG
* *
30614849 AAAAAGAAGGAAAAAGAGCT
1 -AAAAGAAAGAAAAAAAGCT
30614869 TTGAGGAAAT
Statistics
Matches: 64, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
49 40 0.62
50 15 0.23
51 9 0.14
ACGTcount: A:0.49, C:0.12, G:0.22, T:0.18
Consensus pattern (50 bp):
AAAAGAAAGAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAG
Found at i:30616102 original size:40 final size:40
Alignment explanation
Indices: 30615997--30616243 Score: 358
Period size: 40 Copynumber: 6.2 Consensus size: 40
30615987 GGATTGATAA
* * *
30615997 CCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
30616037 CCGGACTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
30616076 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
30616116 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
30616156 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
30616196 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
30616236 CC-GGCTAA
1 CCGGGCTAA
30616244 ACTCCGAAGG
Statistics
Matches: 191, Mismatches: 13, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
39 41 0.21
40 150 0.79
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:30620907 original size:20 final size:20
Alignment explanation
Indices: 30620882--30620923 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
30620872 GGTGGGGCCG
* *
30620882 TGTGGCTTGGGACACGCTCA
1 TGTGGCATGGGACACGCCCA
30620902 TGTGGCATGGGACACGCCCA
1 TGTGGCATGGGACACGCCCA
30620922 TG
1 TG
30620924 CCCTCAGCCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.17, C:0.26, G:0.36, T:0.21
Consensus pattern (20 bp):
TGTGGCATGGGACACGCCCA
Found at i:30622621 original size:27 final size:26
Alignment explanation
Indices: 30622583--30622642 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
30622573 TAACATATAT
* *
30622583 ATATTTGTTCTGGTGCCCTAGGCACA
1 ATATCTGTTCTGGTGACCTAGGCACA
* * *
30622609 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGGCACA
30622636 ATATCTG
1 ATATCTG
30622643 GCAGCTCGCT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGGCACA
Found at i:30638935 original size:29 final size:29
Alignment explanation
Indices: 30638878--30638937 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
30638868 TGGAATTGGT
**
30638878 TACTCAATAACTTTCGACTTTCCTTGATC
1 TACTCAATAACTTTCGACTTTCCCCGATC
*
30638907 TACTCGATAACTTTCGACTTTCCCCGATC
1 TACTCAATAACTTTCGACTTTCCCCGATC
30638936 TA
1 TA
30638938 ACTCTGTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.23, C:0.30, G:0.08, T:0.38
Consensus pattern (29 bp):
TACTCAATAACTTTCGACTTTCCCCGATC
Found at i:30640812 original size:9 final size:9
Alignment explanation
Indices: 30640798--30640824 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
30640788 TTTTATTATA
30640798 TACATATTT
1 TACATATTT
30640807 TACATATTT
1 TACATATTT
30640816 TACATATTT
1 TACATATTT
30640825 AACCTTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.00, T:0.56
Consensus pattern (9 bp):
TACATATTT
Found at i:30644974 original size:46 final size:45
Alignment explanation
Indices: 30644907--30645078 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 45
30644897 AACCCGCCCC
30644907 TAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGTATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGGC-TTCGTATCCA
* * *
30644953 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGT-TACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--GCTTCGTATCCA
* * * *
30644999 TTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGTATCCA
30645046 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
30645079 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
45 5 0.05
46 63 0.59
47 34 0.32
48 4 0.04
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCTTCGTATCCA
Found at i:30645024 original size:93 final size:93
Alignment explanation
Indices: 30644912--30645082 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
30644902 GCCCCTAAGT
* * *
30644912 GAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
30644976 ACGAGTTCGGATGCCTAGTTACATTTCAC
65 ACGAGTTCGGATGCCTAGTTACATTTCAC
30645005 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
30645070 CGAGTTCGGATGC
66 CGAGTTCGGATGC
30645083 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:30649872 original size:40 final size:40
Alignment explanation
Indices: 30649827--30649945 Score: 202
Period size: 40 Copynumber: 3.0 Consensus size: 40
30649817 CTCGATATAT
30649827 TGTATATCCAGGTTAAATCCCGCAGGCTTAGTGCTGGTAA
1 TGTATATCCAGGTTAAATCCCGCAGGCTTAGTGCTGGTAA
* *
30649867 TGTATATCCAGGTTAAATTCCGCAGGCTTCGTGCTGGTAA
1 TGTATATCCAGGTTAAATCCCGCAGGCTTAGTGCTGGTAA
* *
30649907 AGTATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTA
1 TGTATATCCAGGTTAAATCCCGCAGGCTTAGTGCTGGTA
30649946 CTATATCCGG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 73 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (40 bp):
TGTATATCCAGGTTAAATCCCGCAGGCTTAGTGCTGGTAA
Found at i:30649972 original size:80 final size:80
Alignment explanation
Indices: 30649828--30649986 Score: 209
Period size: 80 Copynumber: 2.0 Consensus size: 80
30649818 TCGATATATT
* *
30649828 GTATATCCAGGTTAAATCCCGCAGGCTTAGTGCTGGTAATGTATATCCAGGTTAAATTCCGCAGG
1 GTATATCCAGGTTAAATCCCGCAGGCTTAGTGCTGGTAATCTATATCCAGGCTAAATTCCGCAGG
*
30649893 -CTTCGTGCTGGTAAA
66 CCTT-GTGCTAGTAAA
* *
30649908 GTATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGT-A-CTATATCCGGGCCT-AATGTCCTGC
1 GTATATCCAGGTTAAATCCCGCAGGCTTAGTGCTGGTAATCTATATCCAGG-CTAAAT-TCC-GC
30649970 AGGCCTTGTGCTAGTAA
63 AGGCCTTGTGCTAGTAA
30649987 CTGGATTCAG
Statistics
Matches: 70, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
78 12 0.17
79 5 0.07
80 50 0.71
81 3 0.04
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.30
Consensus pattern (80 bp):
GTATATCCAGGTTAAATCCCGCAGGCTTAGTGCTGGTAATCTATATCCAGGCTAAATTCCGCAGG
CCTTGTGCTAGTAAA
Found at i:30661388 original size:46 final size:45
Alignment explanation
Indices: 30661335--30661510 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 45
30661325 TATTTGGGCA
30661335 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
30661381 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
30661428 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
30661474 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
30661511 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 67 0.60
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:30661490 original size:93 final size:93
Alignment explanation
Indices: 30661331--30661502 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
30661321 AGGATATTTG
*
30661331 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
30661396 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
30661424 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGA
30661488 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
30661503 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:30663511 original size:123 final size:122
Alignment explanation
Indices: 30663292--30663616 Score: 596
Period size: 123 Copynumber: 2.6 Consensus size: 122
30663282 TAATGTCTTC
*
30663292 GTTGATAGGCCTCACACAACCGTGTCACACGCCCGTGGGGCCTCTGTATAGCCCGTATGCGATAA
1 GTTGACAGGCCTCACACAACCGTGTCACACG-CCGTGGGGCCTCTGTATAGCCCGTATGCGATAA
30663357 AATTTTAGCCCAGCTTGAATTGAGTTATTGAGTTGAAAGAAAAAAATTAGGGTTGGGG
65 AATTTTAGCCCAGCTTGAATTGAGTTATTGAGTTGAAAGAAAAAAATTAGGGTTGGGG
30663415 GTTGACAGGCCTCACACAACCGTGTCACACGCCTGTGGGGCCTCTGTATAGCCCGTATGCGATAA
1 GTTGACAGGCCTCACACAACCGTGTCACACGCC-GTGGGGCCTCTGTATAGCCCGTATGCGATAA
*
30663480 AATTTTAGCCCATCTTGAATTGAGTTATTGAGTTGAAAGAAAAAAATTAGGGTTGGGG
65 AATTTTAGCCCAGCTTGAATTGAGTTATTGAGTTGAAAGAAAAAAATTAGGGTTGGGG
*
30663538 GTTGACAGGCCTTACACAACCGTGTCACACGTCCGTGGGGCCTCTGTATAGCCCGTATGCGATAA
1 GTTGACAGGCCTCACACAACCGTGTCACACG-CCGTGGGGCCTCTGTATAGCCCGTATGCGATAA
30663603 AATTTTAGCCCAGC
65 AATTTTAGCCCAGC
30663617 CTTCACACGG
Statistics
Matches: 196, Mismatches: 4, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
122 2 0.01
123 192 0.98
124 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (122 bp):
GTTGACAGGCCTCACACAACCGTGTCACACGCCGTGGGGCCTCTGTATAGCCCGTATGCGATAAA
ATTTTAGCCCAGCTTGAATTGAGTTATTGAGTTGAAAGAAAAAAATTAGGGTTGGGG
Found at i:30663749 original size:20 final size:20
Alignment explanation
Indices: 30663708--30663749 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
30663698 TCGCTTCTCC
**
30663708 CACGCCCGTGTGGTCTCCCA
1 CACGCCCGTGTGGTCTAACA
30663728 CACGCCCGTGT-GTCTGAACA
1 CACGCCCGTGTGGTCT-AACA
30663748 CA
1 CA
30663750 TGGTCGTGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.17, C:0.40, G:0.24, T:0.19
Consensus pattern (20 bp):
CACGCCCGTGTGGTCTAACA
Found at i:30675967 original size:25 final size:25
Alignment explanation
Indices: 30675939--30676021 Score: 60
Period size: 25 Copynumber: 3.2 Consensus size: 25
30675929 GATTTCCTTC
30675939 CCTTATAGAACTTATCAATTCCATG
1 CCTTATAGAACTTATCAATTCCATG
* ** *
30675964 CCTTAGCATGGTCTTA-CATGATTTCCTTG
1 CCTTA-TA-GAACTTATCA--A-TTCCATG
* *
30675993 CCTTATAGAACTCATCAATTCCATT
1 CCTTATAGAACTTATCAATTCCATG
30676018 CCTT
1 CCTT
30676022 GGCATGGTCT
Statistics
Matches: 42, Mismatches: 10, Indels: 12
0.66 0.16 0.19
Matches are distributed among these distances:
25 14 0.33
26 4 0.10
27 9 0.21
28 4 0.10
29 11 0.26
ACGTcount: A:0.25, C:0.27, G:0.10, T:0.39
Consensus pattern (25 bp):
CCTTATAGAACTTATCAATTCCATG
Found at i:30675980 original size:54 final size:54
Alignment explanation
Indices: 30675837--30676045 Score: 303
Period size: 54 Copynumber: 3.9 Consensus size: 54
30675827 TTTCCTTTTT
*
30675837 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATG-TTATCCTTGCCTTATA
1 GAACTCATCAATGCCATGCCTTGGCATGGTCTTACATGATT-TCCTTGCCTTATA
* * *
30675891 GTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTCCCTTATA
1 G-AACTCATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
* * *
30675946 GAACTTATCAATTCCATGCCTTAGCATGGTCTTACATGATTTCCTTGCCTTATA
1 GAACTCATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
* * *
30676000 GAACTCATCAATTCCATTCCTTGGCATGGTCTTACATGATATCCTT
1 GAACTCATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTT
30676046 ATCTTACCAA
Statistics
Matches: 139, Mismatches: 14, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
54 90 0.65
55 47 0.34
56 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.37
Consensus pattern (54 bp):
GAACTCATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
Found at i:30675994 original size:29 final size:28
Alignment explanation
Indices: 30675915--30675997 Score: 75
Period size: 29 Copynumber: 3.0 Consensus size: 28
30675905 CCATGTCTTG
*
30675915 ACATGGTCTTACATGATTTCCTTCCCTT
1 ACATGGTCTTACATGATTTCCTTGCCTT
* ** *
30675943 ATA-GAACTTATCA--A-TTCCATGCCTT
1 ACATGGTCTTA-CATGATTTCCTTGCCTT
30675968 AGCATGGTCTTACATGATTTCCTTGCCTT
1 A-CATGGTCTTACATGATTTCCTTGCCTT
30675997 A
1 A
30675998 TAGAACTCAT
Statistics
Matches: 40, Mismatches: 9, Indels: 11
0.67 0.15 0.18
Matches are distributed among these distances:
25 10 0.25
26 4 0.10
27 10 0.25
28 5 0.12
29 11 0.28
ACGTcount: A:0.23, C:0.25, G:0.12, T:0.40
Consensus pattern (28 bp):
ACATGGTCTTACATGATTTCCTTGCCTT
Found at i:30678659 original size:21 final size:23
Alignment explanation
Indices: 30678618--30678659 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
30678608 ATAATAAACC
*
30678618 AAATAAAATATTATGAAAAATAA
1 AAATAAAATATTATAAAAAATAA
30678641 AAATAAAAT-TT-TAAAAAAT
1 AAATAAAATATTATAAAAAAT
30678660 TAGAACATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 2 0.11
23 9 0.50
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (23 bp):
AAATAAAATATTATAAAAAATAA
Found at i:30679718 original size:15 final size:15
Alignment explanation
Indices: 30679695--30679732 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
30679685 TTATATATAC
*
30679695 ATAATATTA-TTTCAA
1 ATAAAATTAGTTTC-A
30679710 ATAAAATTAGTTTCA
1 ATAAAATTAGTTTCA
30679725 ATAAAATT
1 ATAAAATT
30679733 TAATTATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 17 0.81
16 4 0.19
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (15 bp):
ATAAAATTAGTTTCA
Found at i:30679964 original size:17 final size:17
Alignment explanation
Indices: 30679942--30679996 Score: 85
Period size: 17 Copynumber: 3.3 Consensus size: 17
30679932 AAATACACTC
30679942 TCTCTTTGATCTCCTAT
1 TCTCTTTGATCTCCTAT
30679959 TCTCTTTGATCTCCTAT
1 TCTCTTTGATCTCCTAT
* *
30679976 TCTCTTTGTTCT-TTAT
1 TCTCTTTGATCTCCTAT
30679992 TCTCT
1 TCTCT
30679997 GTCTTTTATT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
16 8 0.22
17 28 0.78
ACGTcount: A:0.09, C:0.27, G:0.05, T:0.58
Consensus pattern (17 bp):
TCTCTTTGATCTCCTAT
Found at i:30682174 original size:43 final size:43
Alignment explanation
Indices: 30682083--30682190 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 43
30682073 AGATGTAATT
* * *
30682083 ACATGTAAGACCATGTCTGGGACATTGGCATCATTATATGATT
1 ACATGTAAGACCATGTTTGGGACATTGGCATCATTATACGATA
* * *
30682126 TCATGTAAGACCATGTTTGGTACGTTGGCATCGA-TATACGATA
1 ACATGTAAGACCATGTTTGGGACATTGGCATC-ATTATACGATA
* *
30682169 ACATGTAAGATCATATTTGGGA
1 ACATGTAAGACCATGTTTGGGA
30682191 TATGGCACTG
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
43 53 0.98
44 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (43 bp):
ACATGTAAGACCATGTTTGGGACATTGGCATCATTATACGATA
Found at i:30685667 original size:39 final size:39
Alignment explanation
Indices: 30685624--30685753 Score: 233
Period size: 39 Copynumber: 3.3 Consensus size: 39
30685614 ATTATATTAT
* *
30685624 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
30685663 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
30685702 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
30685741 CAGCACGAAGCCT
1 CAGCACGAAGCCT
30685754 ACAGACCCTA
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 87 1.00
ACGTcount: A:0.25, C:0.32, G:0.25, T:0.19
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:30685771 original size:39 final size:39
Alignment explanation
Indices: 30685624--30685814 Score: 201
Period size: 39 Copynumber: 4.9 Consensus size: 39
30685614 ATTATATTAT
* *
30685624 CAGCACAAAGCCTGCGGGACTTTAA-CCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGAC-CTAAGCCCGGATACATTTC
* **
30685663 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACCTAAGCCCGGATACATTTC
* *
30685702 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACCTAAGCCCGGATACATTTC
* * * * *
30685741 CAGCACGAAGCCTAC-AGACCCTAAGTCCGGATATAATTC
1 CAGCACGAAGCCTGCGGGA-CCTAAGCCCGGATACATTTC
*
30685780 CAGCAC-ATAGCCTGC-GGACCCTAAGTCCGGATACA
1 CAGCACGA-AGCCTGCGGGA-CCTAAGCCCGGATACA
30685815 CATCAAATAT
Statistics
Matches: 135, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
38 5 0.04
39 130 0.96
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.19
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACCTAAGCCCGGATACATTTC
Found at i:30685771 original size:78 final size:77
Alignment explanation
Indices: 30685624--30685796 Score: 222
Period size: 78 Copynumber: 2.2 Consensus size: 77
30685614 ATTATATTAT
* * * **
30685624 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGC
1 CAGCAC-AAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTACGAGACCTAAGC
*
30685689 CCGGATACATTTC
65 CCGGATACAATTC
*
30685702 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTAC-AGACCCTAAG
1 CAGCAC-AAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTACGAGA-CCTAAG
* *
30685766 TCCGGATATAATTC
64 CCCGGATACAATTC
30685780 CAGCACATAGCCTGCGG
1 CAGCACA-AGCCTGCGG
30685797 ACCCTAAGTC
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
77 3 0.04
78 80 0.96
ACGTcount: A:0.26, C:0.31, G:0.24, T:0.19
Consensus pattern (77 bp):
CAGCACAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTACGAGACCTAAGCC
CGGATACAATTC
Found at i:30687958 original size:31 final size:31
Alignment explanation
Indices: 30687920--30687998 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
30687910 TTTAATGGTT
30687920 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
30687951 ACTGGGCCGAAACCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
30687982 ATTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
30687999 ACTGTAAACG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:30688069 original size:42 final size:42
Alignment explanation
Indices: 30688022--30688113 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
30688012 TGGCCCTTAG
* ** * *
30688022 GCCCATTTCAATATCACATGTAATGTCAGTGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
30688064 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
30688106 GCCCATTT
1 GCCCATTT
30688114 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:30688329 original size:26 final size:26
Alignment explanation
Indices: 30688258--30688380 Score: 196
Period size: 26 Copynumber: 4.8 Consensus size: 26
30688248 CCTCTTTAAT
* *
30688258 AACTGGGGCA-AAGCGCTTTTCGATA
1 AACTGGGGCATAAGCCCTTTTCAATA
30688283 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
30688308 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
30688334 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
30688360 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
30688381 GCACTTCCTC
Statistics
Matches: 91, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 33 0.36
26 58 0.64
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:30688839 original size:17 final size:17
Alignment explanation
Indices: 30688817--30688857 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
30688807 TTTACCCAAA
30688817 TGGGCCTGAAAGCCCAT
1 TGGGCCTGAAAGCCCAT
30688834 TGGGCCTGAAAGCCCAT
1 TGGGCCTGAAAGCCCAT
30688851 TGAGGCC
1 TG-GGCC
30688858 AAACTTACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 19 0.83
18 4 0.17
ACGTcount: A:0.22, C:0.29, G:0.32, T:0.17
Consensus pattern (17 bp):
TGGGCCTGAAAGCCCAT
Found at i:30689197 original size:27 final size:27
Alignment explanation
Indices: 30689166--30689234 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 27
30689156 TACGGAACAT
*
30689166 AAGGGCATATTC-GTCATTTTACCATAC
1 AAGGGCAT-TTCGGTCACTTTACCATAC
* *
30689193 AAGGGTATTTCGGTCACTTTACCCTAC
1 AAGGGCATTTCGGTCACTTTACCATAC
*
30689220 AGGGGC-TTTACGGTC
1 AAGGGCATTT-CGGTC
30689235 TTTTTACCTA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.32
Consensus pattern (27 bp):
AAGGGCATTTCGGTCACTTTACCATAC
Found at i:30689326 original size:27 final size:27
Alignment explanation
Indices: 30689296--30689544 Score: 71
Period size: 27 Copynumber: 8.8 Consensus size: 27
30689286 GTAAATCTAC
*
30689296 AAACTAAGGGTATTTTAGTAATTTTGT
1 AAACTAAGGGTATTTTAGTAATTTTAT
* *
30689323 AAACAAATGGTATTTCTA-TAATTTT-T
1 AAACTAAGGGTATTT-TAGTAATTTTAT
* *
30689349 AGAATGTCAAGGGTATTTCTATAATTTAGTAATTTTGT
1 A-AA-CT-AAGGGTA----T-T--TT-AGTAATTTTAT
* *
30689387 AAACAAATGGTATTTCTA-TAATTTT-T
1 AAACTAAGGGTATTT-TAGTAATTTTAT
* *
30689413 AGAATGTCAAGGGTATTTCTA-TAATTTTGT
1 A-AA-CT-AAGGGTATTT-TAGTAATTTTAT
* * *
30689443 AAA-TCAGGGGTATTTTGGTAATTTTAC
1 AAACT-AAGGGTATTTTAGTAATTTTAT
* * * ** * *
30689470 AAATTGAGGGTGTTTCGGTAATTTCAC
1 AAACTAAGGGTATTTTAGTAATTTTAT
* * * *
30689497 AAACCAATGGTATTTTGGTAATTTTAC
1 AAACTAAGGGTATTTTAGTAATTTTAT
*
30689524 AAACT-AGGGTATTTTGGTAAT
1 AAACTAAGGGTATTTTAGTAAT
30689545 GCTACCCTAT
Statistics
Matches: 172, Mismatches: 29, Indels: 43
0.70 0.12 0.18
Matches are distributed among these distances:
26 20 0.12
27 93 0.54
28 5 0.03
29 28 0.16
30 3 0.02
31 1 0.01
33 1 0.01
34 1 0.01
35 7 0.04
36 2 0.01
37 9 0.05
38 2 0.01
ACGTcount: A:0.33, C:0.07, G:0.18, T:0.43
Consensus pattern (27 bp):
AAACTAAGGGTATTTTAGTAATTTTAT
Found at i:30689366 original size:29 final size:29
Alignment explanation
Indices: 30689331--30689440 Score: 125
Period size: 29 Copynumber: 3.6 Consensus size: 29
30689321 GTAAACAAAT
30689331 GGTATTTCTATAATTTTTAGAATGTCAAG
1 GGTATTTCTATAATTTTTAGAATGTCAAG
*
30689360 GGTATTTCTATAA--TTTAGTAATTTTGTAAACAAAT
1 GGTATTTCTATAATTTTTAG-AA---TGT---C-AAG
30689395 GGTATTTCTATAATTTTTAGAATGTCAAG
1 GGTATTTCTATAATTTTTAGAATGTCAAG
30689424 GGTATTTCTATAATTTT
1 GGTATTTCTATAATTTT
30689441 GTAAATCAGG
Statistics
Matches: 69, Mismatches: 2, Indels: 20
0.76 0.02 0.22
Matches are distributed among these distances:
27 5 0.07
28 2 0.03
29 32 0.46
30 1 0.01
31 3 0.04
33 3 0.04
34 1 0.01
35 15 0.22
36 2 0.03
37 5 0.07
ACGTcount: A:0.32, C:0.06, G:0.15, T:0.47
Consensus pattern (29 bp):
GGTATTTCTATAATTTTTAGAATGTCAAG
Found at i:30689410 original size:64 final size:64
Alignment explanation
Indices: 30689309--30689444 Score: 263
Period size: 64 Copynumber: 2.1 Consensus size: 64
30689299 CTAAGGGTAT
30689309 TTTAGTAATTTTGTAAACAAATGGTATTTCTATAATTTTTAGAATGTCAAGGGTATTTCTATAA
1 TTTAGTAATTTTGTAAACAAATGGTATTTCTATAATTTTTAGAATGTCAAGGGTATTTCTATAA
30689373 TTTAGTAATTTTGTAAACAAATGGTATTTCTATAATTTTTAGAATGTCAAGGGTATTTCTATAA
1 TTTAGTAATTTTGTAAACAAATGGTATTTCTATAATTTTTAGAATGTCAAGGGTATTTCTATAA
*
30689437 TTTTGTAA
1 TTTAGTAA
30689445 ATCAGGGGTA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
64 71 1.00
ACGTcount: A:0.34, C:0.06, G:0.14, T:0.46
Consensus pattern (64 bp):
TTTAGTAATTTTGTAAACAAATGGTATTTCTATAATTTTTAGAATGTCAAGGGTATTTCTATAA
Found at i:30689541 original size:26 final size:26
Alignment explanation
Indices: 30689450--30689544 Score: 118
Period size: 27 Copynumber: 3.6 Consensus size: 26
30689440 TGTAAATCAG
*
30689450 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAACT-A
* * * *
30689477 GGGTGTTTCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAA-CTA
*
30689504 TGGTATTTTGGTAATTTTACAAACTA
1 GGGTATTTTGGTAATTTTACAAACTA
30689530 GGGTATTTTGGTAAT
1 GGGTATTTTGGTAAT
30689545 GCTACCCTAT
Statistics
Matches: 56, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
26 16 0.29
27 40 0.71
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.41
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAACTA
Found at i:30689614 original size:27 final size:27
Alignment explanation
Indices: 30689582--30689664 Score: 114
Period size: 27 Copynumber: 3.1 Consensus size: 27
30689572 TTCACAATTA
*
30689582 AGGGTAAAAC-GATAATTTTGTAAATCG
1 AGGGTAAAACAG-TAATTCTGTAAATCG
*
30689609 AGGGTAAAACAGTAATTCTGTAAATCA
1 AGGGTAAAACAGTAATTCTGTAAATCG
* *
30689636 AAGGTAAAACAGTAATTCTATAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
30689663 AG
1 AG
30689665 CGTACTTTGG
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
27 48 0.98
28 1 0.02
ACGTcount: A:0.45, C:0.10, G:0.19, T:0.27
Consensus pattern (27 bp):
AGGGTAAAACAGTAATTCTGTAAATCG
Found at i:30698752 original size:56 final size:56
Alignment explanation
Indices: 30698666--30698785 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
30698656 ACAAGGGATG
30698666 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
30698722 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
30698778 ATGGGCAA
1 ATGGGCAA
30698786 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:30706940 original size:39 final size:38
Alignment explanation
Indices: 30706796--30707015 Score: 255
Period size: 40 Copynumber: 5.6 Consensus size: 38
30706786 TTGAATGATG
* * * *
30706796 TCCGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGCTAAGTCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
30706834 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGG-CTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
30706874 TCCGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
30706912 TCCGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
*
30706951 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCC-GGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
30706992 -CCGGGCTATGTCCGAAGGCATTTG
1 TCC-GGCTAAGTCCGAAGGCATTTG
30707016 AACGAGGAGC
Statistics
Matches: 161, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
38 38 0.24
39 52 0.32
40 62 0.39
41 9 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (38 bp):
TCCGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:30708803 original size:47 final size:47
Alignment explanation
Indices: 30708733--30709024 Score: 406
Period size: 47 Copynumber: 6.2 Consensus size: 47
30708723 CCCTTCGGGA
* * * * *
30708733 CTTATCACATTTATACGCTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
30708780 CTTATCACATATATAGACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
30708827 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30708874 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * * * *
30708921 CTTATCATAGATACACACCTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30708968 CTTATCACATATATACACTTTCCACA-TCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTT-CACATTCATCACATCGGCCATTAGGC
30709015 CTTATCACAT
1 CTTATCACAT
30709025 TTCACACCTT
Statistics
Matches: 215, Mismatches: 29, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
47 211 0.98
48 4 0.02
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:30712636 original size:37 final size:37
Alignment explanation
Indices: 30712577--30712685 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
30712567 AGCTCAGATG
* *
30712577 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
30712614 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
30712651 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
30712686 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:30712884 original size:48 final size:48
Alignment explanation
Indices: 30712826--30713463 Score: 1026
Period size: 48 Copynumber: 13.0 Consensus size: 48
30712816 ATATACACAC
* *
30712826 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
30712874 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
30712922 ATCTCATATATATATTTCACATTAACCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
30712972 ATCTCATACATATTTCACATTAGCCATTTGACTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
30713020 ATCTCATATATATATTTCACATTAGCCATTCAGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
30713070 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
30713118 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
30713166 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
30713216 ATCTCATACATATTTCGCATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
30713264 ATCTCATATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC----ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
30713316 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
30713366 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
30713414 ATCTCATACATATTTCACATTAGCCATTCGAG-TTTACGACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCG-GCTTTACCACATATACAT
30713462 AT
1 AT
30713464 ATTTATCTTG
Statistics
Matches: 558, Mismatches: 21, Indels: 22
0.93 0.03 0.04
Matches are distributed among these distances:
48 325 0.58
49 1 0.00
50 186 0.33
52 46 0.08
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:30712985 original size:98 final size:96
Alignment explanation
Indices: 30712826--30713463 Score: 1026
Period size: 98 Copynumber: 6.5 Consensus size: 96
30712816 ATATACACAC
* *
30712826 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
30712891 CACTAGCCATTCGGCTTTACCACATATACAT
66 CATTAGCCATTCGGCTTTACCACATATACAT
* *
30712922 ATCTCATATATATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATACATATTT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
* *
30712987 CACATTAGCCATTTGACTTTACCACATATACAT
64 CACATTAGCCATTCGGCTTTACCACATATACAT
* *
30713020 ATCTCATATATATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
30713085 CACATTAGCCATTCGGCTTTACCACATATACAT
64 CACATTAGCCATTCGGCTTTACCACATATACAT
*
30713118 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTT
30713183 CACATTAGCCATTCGGCTTTACCACATATACAT
64 CACATTAGCCATTCGGCTTTACCACATATACAT
* *
30713216 ATCTCATACATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----ATACATAT
30713281 TTCACATTAGCCATTCGGCTTTACCACATATACAT
62 TTCACATTAGCCATTCGGCTTTACCACATATACAT
*
30713316 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
30713381 CACATTAGCCATTCGGCTTTACCACATATACAT
64 CACATTAGCCATTCGGCTTTACCACATATACAT
*
30713414 ATCTCATACATATTTCACATTAGCCATTCGAG-TTTACGACATATACATAT
1 ATCTCATACATATTTCACATTAGCCATTCG-GCTTTACCACATATACATAT
30713464 ATTTATCTTG
Statistics
Matches: 513, Mismatches: 20, Indels: 18
0.93 0.04 0.03
Matches are distributed among these distances:
96 92 0.18
97 1 0.00
98 324 0.63
100 50 0.10
102 46 0.09
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (96 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CATTAGCCATTCGGCTTTACCACATATACAT
Found at i:30713012 original size:146 final size:145
Alignment explanation
Indices: 30712826--30713463 Score: 1064
Period size: 146 Copynumber: 4.3 Consensus size: 145
30712816 ATATACACAC
* * *
30712826 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC-ATACATATTTC
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAATATATATTTC
* * *
30712890 ACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATTCGG
66 ACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGCCATTCGG
30712955 CTTTACCACATATACAT
129 CTTTACCACATATACAT
* *
30712972 ATCTCATACATATTTCACATTAGCCATTTGACTTTACCACATATACATATCTCATATATATATTT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-ATATATATTT
*
30713037 CACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGC
65 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGC
30713102 TTTACCACATATACAT
130 TTTACCACATATACAT
30713118 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-ATATATATTT
*
30713183 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCATTAGCCATTCGGC
65 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGC
30713248 TTTACCACATATACAT
130 TTTACCACATATACAT
*
30713264 ATCTCATATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 ATCTC----ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-ATATAT
30713329 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATT
61 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATT
30713394 CGGCTTTACCACATATACAT
126 CGGCTTTACCACATATACAT
*
30713414 ATCTCATACATATTTCACATTAGCCATTCGAG-TTTACGACATATACATAT
1 ATCTCATACATATTTCACATTAGCCATTCG-GCTTTACCACATATACATAT
30713464 ATTTATCTTG
Statistics
Matches: 468, Mismatches: 17, Indels: 14
0.94 0.03 0.03
Matches are distributed among these distances:
146 278 0.59
147 1 0.00
148 45 0.10
150 144 0.31
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (145 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAATATATATTTC
ACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCT
TTACCACATATACAT
Found at i:30718005 original size:21 final size:20
Alignment explanation
Indices: 30717981--30718019 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
30717971 GAATATTTTT
30717981 ATGTTTGATGATAGATTATGA
1 ATGTTTGATGATAG-TTATGA
30718002 ATGTTTGATGATAGTTAT
1 ATGTTTGATGATAGTTAT
30718020 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (20 bp):
ATGTTTGATGATAGTTATGA
Found at i:30718029 original size:21 final size:21
Alignment explanation
Indices: 30717981--30718027 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
30717971 GAATATTTTT
*
30717981 ATGTTTGATGATAGATTATGA
1 ATGTTTGATGATAGATTATCA
30718002 ATGTTTGATGATAG-TTATACA
1 ATGTTTGATGATAGATTAT-CA
30718023 A-GTTT
1 ATGTTT
30718028 TGTTAAGTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.32, C:0.02, G:0.21, T:0.45
Consensus pattern (21 bp):
ATGTTTGATGATAGATTATCA
Found at i:30735630 original size:133 final size:133
Alignment explanation
Indices: 30735391--30735654 Score: 471
Period size: 133 Copynumber: 2.0 Consensus size: 133
30735381 GTGCGACTGC
30735391 ATGGGGTGCCAGTGTCGATAATTTCTAATCGAGACCCTAGGTTTACATCTCGTTTTGGGAAGTTG
1 ATGGGGTGCCAGTGTCGATAA-TTCTAATCGAGACCCTAGGTTTACATCTCGTTTTGGGAAGTTG
30735456 CAGGAAGCGTTGGGTACACGATTGGATTTTAGCACCGCTTTTCACCCACAGACAGATGGACAGTC
65 CAGGAAGCGTTGGGTACACGATTGGATTTTAGCACCGCTTTTCACCCACAGACAGATGGACAGTC
30735521 AGAA
130 AGAA
30735525 ATGGGGTGCCAGTGTCGATAA-TCTAATCGAGA-CCTAGGTTTACATCTCGGTTTTGGTGTAAGT
1 ATGGGGTGCCAGTGTCGATAATTCTAATCGAGACCCTAGGTTTACATCTC-GTTTTGG-G-AAGT
30735588 TGCA-GAAGCGTTGGGTACACGATTGGATTTTAGCACCGCTTTTCACCCACAGACAGATGGACAG
63 TGCAGGAAGCGTTGGGTACACGATTGGATTTTAGCACCGCTTTTCACCCACAGACAGATGGACAG
30735652 TCA
128 TCA
30735655 AAAGGGTTAT
Statistics
Matches: 127, Mismatches: 0, Indels: 7
0.95 0.00 0.05
Matches are distributed among these distances:
131 16 0.13
132 18 0.14
133 64 0.50
134 29 0.23
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (133 bp):
ATGGGGTGCCAGTGTCGATAATTCTAATCGAGACCCTAGGTTTACATCTCGTTTTGGGAAGTTGC
AGGAAGCGTTGGGTACACGATTGGATTTTAGCACCGCTTTTCACCCACAGACAGATGGACAGTCA
GAA
Found at i:30744074 original size:61 final size:61
Alignment explanation
Indices: 30743979--30744102 Score: 248
Period size: 61 Copynumber: 2.0 Consensus size: 61
30743969 CGTACGCCTA
30743979 TGTGCAAGAAAGGGGATTGTTTTGTTTCTTGGTTCTTACCTATATTTTTCAAGAATTAATT
1 TGTGCAAGAAAGGGGATTGTTTTGTTTCTTGGTTCTTACCTATATTTTTCAAGAATTAATT
30744040 TGTGCAAGAAAGGGGATTGTTTTGTTTCTTGGTTCTTACCTATATTTTTCAAGAATTAATT
1 TGTGCAAGAAAGGGGATTGTTTTGTTTCTTGGTTCTTACCTATATTTTTCAAGAATTAATT
30744101 TG
1 TG
30744103 AGTTTTTTAA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 63 1.00
ACGTcount: A:0.24, C:0.10, G:0.20, T:0.46
Consensus pattern (61 bp):
TGTGCAAGAAAGGGGATTGTTTTGTTTCTTGGTTCTTACCTATATTTTTCAAGAATTAATT
Found at i:30748073 original size:5 final size:5
Alignment explanation
Indices: 30748063--30748099 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
30748053 TCGAGCCAAA
30748063 AATTT AATTT AATTT AATATT -A-TT AATTT AATTT AAT
1 AATTT AATTT AATTT AAT-TT AATTT AATTT AATTT AAT
30748100 ATTATTACAT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
3 2 0.07
4 1 0.03
5 24 0.83
6 2 0.07
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (5 bp):
AATTT
Found at i:30748090 original size:19 final size:19
Alignment explanation
Indices: 30748066--30748106 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
30748056 AGCCAAAAAT
30748066 TTAATTTAATTTAATATTA
1 TTAATTTAATTTAATATTA
30748085 TTAATTTAATTTAATATTA
1 TTAATTTAATTTAATATTA
30748104 TTA
1 TTA
30748107 CATGGTCCGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
TTAATTTAATTTAATATTA
Found at i:30753356 original size:14 final size:15
Alignment explanation
Indices: 30753332--30753361 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
30753322 GGATATCAAA
30753332 ACATGAATTAAGAAC
1 ACATGAATTAAGAAC
30753347 ACAT-AATTAAGAAC
1 ACATGAATTAAGAAC
30753361 A
1 A
30753362 AGTTAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.57, C:0.13, G:0.10, T:0.20
Consensus pattern (15 bp):
ACATGAATTAAGAAC
Found at i:30758820 original size:6 final size:6
Alignment explanation
Indices: 30758811--30758843 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
30758801 AAGAAAATTG
*
30758811 AAATGA AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAA
30758844 AATAGGAGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:30766352 original size:26 final size:26
Alignment explanation
Indices: 30766316--30766377 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 26
30766306 ACATATTTTC
*
30766316 TCAAAATTTTA-CTAGGGGTAAGA-TCG
1 TCAAAATTTTATC-AGGGGTAA-ATTCA
30766342 TCAAAATTTTATCAGGGGTAAATTCA
1 TCAAAATTTTATCAGGGGTAAATTCA
30766368 TCAAAATTTT
1 TCAAAATTTT
30766378 TTTGGTGGTA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
25 1 0.03
26 31 0.94
27 1 0.03
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.35
Consensus pattern (26 bp):
TCAAAATTTTATCAGGGGTAAATTCA
Found at i:30772394 original size:25 final size:25
Alignment explanation
Indices: 30772366--30772460 Score: 129
Period size: 25 Copynumber: 3.8 Consensus size: 25
30772356 CTCTTTTAAT
*
30772366 AACTGGGGAAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGATA
*
30772391 AACTGGGGCAAAGCCC-TTTTCAGTA
1 AACTGGGGCAAAGCCCTTTTTGA-TA
* * *
30772416 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTGATA
30772441 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
30772461 GCACTTCCTC
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
24 5 0.08
25 53 0.87
26 3 0.05
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.25
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGATA
Found at i:30772429 original size:50 final size:50
Alignment explanation
Indices: 30772366--30772460 Score: 154
Period size: 50 Copynumber: 1.9 Consensus size: 50
30772356 CTCTTTTAAT
* *
30772366 AACTGGGGAAAAGCCCTTTTTGATAAACTGGGGCAAAGCCCTTTTCAGTA
1 AACTAGGGAAAAGCCCTTTTCGATAAACTGGGGCAAAGCCCTTTTCAGTA
* *
30772416 AACTAGGGCAAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTT
1 AACTAGGGAAAAGCCCTTTTCGATAAACTGGGGCAAAGCCCTTTT
30772461 GCACTTCCTC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 41 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.25
Consensus pattern (50 bp):
AACTAGGGAAAAGCCCTTTTCGATAAACTGGGGCAAAGCCCTTTTCAGTA
Found at i:30772533 original size:20 final size:21
Alignment explanation
Indices: 30772508--30772556 Score: 73
Period size: 20 Copynumber: 2.4 Consensus size: 21
30772498 AACTGAATAC
* *
30772508 ATCATGTGCATATCATA-CAT
1 ATCATGTACATATCATATCAA
30772528 ATCATGTACATATCATATCAA
1 ATCATGTACATATCATATCAA
30772549 ATCATGTA
1 ATCATGTA
30772557 TATCAAAATC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (21 bp):
ATCATGTACATATCATATCAA
Found at i:30772537 original size:11 final size:11
Alignment explanation
Indices: 30772508--30772556 Score: 50
Period size: 11 Copynumber: 4.7 Consensus size: 11
30772498 AACTGAATAC
*
30772508 ATCATGTGCAT
1 ATCATGTACAT
30772519 ATCA--TACAT
1 ATCATGTACAT
30772528 ATCATGTACAT
1 ATCATGTACAT
* *
30772539 ATCATAT-CAA
1 ATCATGTACAT
30772549 ATCATGTA
1 ATCATGTA
30772557 TATCAAAATC
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
9 8 0.26
10 8 0.26
11 15 0.48
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (11 bp):
ATCATGTACAT
Found at i:30779225 original size:25 final size:25
Alignment explanation
Indices: 30779197--30779291 Score: 172
Period size: 25 Copynumber: 3.8 Consensus size: 25
30779187 CTCTTTTAAT
*
30779197 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGGTA
*
30779222 AACTGGGGCAAAGCCCTTTTAGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
30779247 AACTGGGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
30779272 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
30779292 GCACTTCCTC
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 67 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGGTA
Found at i:30779227 original size:50 final size:50
Alignment explanation
Indices: 30779184--30779291 Score: 175
Period size: 50 Copynumber: 2.2 Consensus size: 50
30779174 CTGGAGGCCT
30779184 AGCCTCTTTTA-AT-AACTGGGGCAAAGCCCTTTTTGATAAACTGGGGCAA
1 AGCC-CTTTTAGATAAACTGGGGCAAAGCCCTTTTTGATAAACTGGGGCAA
* *
30779233 AGCCCTTTTAGGTAAACTGGGGCAAAGCCCTTTTTGGTAAACTGGGGCAA
1 AGCCCTTTTAGATAAACTGGGGCAAAGCCCTTTTTGATAAACTGGGGCAA
30779283 AGCCCTTTT
1 AGCCCTTTT
30779292 GCACTTCCTC
Statistics
Matches: 55, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
48 6 0.11
49 5 0.09
50 44 0.80
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (50 bp):
AGCCCTTTTAGATAAACTGGGGCAAAGCCCTTTTTGATAAACTGGGGCAA
Found at i:30779365 original size:20 final size:21
Alignment explanation
Indices: 30779340--30779386 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
30779330 AATGAATACT
*
30779340 TCATGTGCATATCATA-CATA
1 TCATGTGCATATCATATCAAA
*
30779360 TCATGTGCGTATCATATCAAA
1 TCATGTGCATATCATATCAAA
30779381 TCATGT
1 TCATGT
30779387 ATATCAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 15 0.62
21 9 0.38
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (21 bp):
TCATGTGCATATCATATCAAA
Found at i:30782655 original size:28 final size:30
Alignment explanation
Indices: 30782568--30782654 Score: 102
Period size: 30 Copynumber: 2.9 Consensus size: 30
30782558 CCTACAGGGG
* * ** *
30782568 ACACACGGCCGAGTCACACGATCATGTGTC
1 ACACACGGCTGAGACACACGCCCGTGTGTC
*
30782598 ACACACGGTTGAGACACACGCCCGTGTGTC
1 ACACACGGCTGAGACACACGCCCGTGTGTC
* *
30782628 ACACATGGCTGAGACACACGCCTGTGT
1 ACACACGGCTGAGACACACGCCCGTGT
30782655 CTTAGGTCGT
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.25, C:0.32, G:0.25, T:0.17
Consensus pattern (30 bp):
ACACACGGCTGAGACACACGCCCGTGTGTC
Found at i:30783042 original size:41 final size:41
Alignment explanation
Indices: 30782946--30783187 Score: 310
Period size: 41 Copynumber: 6.0 Consensus size: 41
30782936 TTTTAAAATA
* * *
30782946 CAGAGCAATAGCGGCG-TTTTAAGAAAAATGCCGCTAAAAA-
1 CAGAGCAATAGCGGCGCTTTT-GGTAAAACGCCGCTAAAAAC
** * *
30782986 CAGAGCAATAGCGGCGCTTTTCTTAAAATGTCGCTAAAAAC
1 CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAC
**
30783027 CAGAGCAATAGCGGCGCTTTTCTTAAAACGCCGCTAAAAAC
1 CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAC
* *
30783068 CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAGAAC
1 CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAC
* * *
30783109 TAGAGC-ATTGCGGCGCTTTTGGTAAAACGCTGCTAAAAAC
1 CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAC
* *
30783149 CAGGGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAA
1 CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAA
30783188 GTCATATAAC
Statistics
Matches: 179, Mismatches: 20, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
40 65 0.36
41 114 0.64
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (41 bp):
CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAC
Found at i:30783122 original size:81 final size:82
Alignment explanation
Indices: 30782946--30783187 Score: 319
Period size: 81 Copynumber: 3.0 Consensus size: 82
30782936 TTTTAAAATA
* * * * **
30782946 CAGAGCAATAGCGGCG-TTTTAAGAAAAATGCCGCTAAAAA-CAGAGCAATAGCGGCGCTTTTCT
1 CAGAGCAATAGCGGCGCTTTT-CGTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGG
* *
30783009 TAAAATGTCGCTAAAAAC
65 TAAAACGCCGCTAAAAAC
*
30783027 CAGAGCAATAGCGGCGCTTTTCTTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
1 CAGAGCAATAGCGGCGCTTTTCGTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
*
30783092 AAAACGCCGCTAAGAAC
66 AAAACGCCGCTAAAAAC
* * * * *
30783109 TAGAGC-ATTGCGGCGCTTTTGGTAAAACGCTGCTAAAAACCAGGGCATTAGCGGCGCTTTTGGT
1 CAGAGCAATAGCGGCGCTTTTCGTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
30783173 AAAACGCCGCTAAAA
66 AAAACGCCGCTAAAA
30783188 GTCATATAAC
Statistics
Matches: 142, Mismatches: 17, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
81 98 0.69
82 44 0.31
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (82 bp):
CAGAGCAATAGCGGCGCTTTTCGTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
AAAACGCCGCTAAAAAC
Found at i:30783161 original size:122 final size:122
Alignment explanation
Indices: 30782946--30783187 Score: 319
Period size: 122 Copynumber: 2.0 Consensus size: 122
30782936 TTTTAAAATA
* *
30782946 CAGAGCAATAGCGGCGTTTTAAGAAAAATGCCGCTAAAAACAGAGCAATAGCGGCGCTTTTCTTA
1 CAGAGCAATAGCGGCGTTTTAAGAAAAACGCCGCTAAAAACAGAGCAATAGCGGCGCTTTTCGTA
* *
30783011 AAATGTCGCTAAAAACCAGAGCAATAGCGGCGCTTTTCTTAAAACGCCGCTAAAAAC
66 AAACGTCGCTAAAAACCAGAGCAATAGCGGCGCTTTTCGTAAAACGCCGCTAAAAAC
* * * * * *
30783068 CAGAGCATTAGCGGCGCTTTT-GGTAAAACGCCGCTAAGAACTAGAGC-ATTGCGGCGCTTTTGG
1 CAGAGCAATAGCGGCG-TTTTAAGAAAAACGCCGCTAAAAAC-AGAGCAATAGCGGCGCTTTTCG
* * *
30783131 TAAAACG-CTGCTAAAAACCAGGGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAA
64 TAAAACGTC-GCTAAAAACCAGAGCAATAGCGGCGCTTTTCGTAAAACGCCGCTAAAA
30783188 GTCATATAAC
Statistics
Matches: 104, Mismatches: 13, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
121 1 0.01
122 94 0.90
123 9 0.09
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (122 bp):
CAGAGCAATAGCGGCGTTTTAAGAAAAACGCCGCTAAAAACAGAGCAATAGCGGCGCTTTTCGTA
AAACGTCGCTAAAAACCAGAGCAATAGCGGCGCTTTTCGTAAAACGCCGCTAAAAAC
Found at i:30784231 original size:15 final size:15
Alignment explanation
Indices: 30784211--30784241 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
30784201 TTAATTTAGT
*
30784211 AGATAAATGTATATA
1 AGATAAATATATATA
30784226 AGATAAATATATATA
1 AGATAAATATATATA
30784241 A
1 A
30784242 ATTATTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.10, T:0.32
Consensus pattern (15 bp):
AGATAAATATATATA
Found at i:30791518 original size:12 final size:12
Alignment explanation
Indices: 30791501--30791526 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
30791491 ACGATCGAGG
30791501 GATGAATCTGAT
1 GATGAATCTGAT
30791513 GATGAATCTGAT
1 GATGAATCTGAT
30791525 GA
1 GA
30791527 GGAGGATGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.31
Consensus pattern (12 bp):
GATGAATCTGAT
Found at i:30795217 original size:21 final size:21
Alignment explanation
Indices: 30795191--30795238 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
30795181 TCAACTTAGA
30795191 GCGGAGGCAGCAGCGAGGGAG
1 GCGGAGGCAGCAGCGAGGGAG
30795212 GCGGAGGCAGCAGCGAGGGAG
1 GCGGAGGCAGCAGCGAGGGAG
30795233 GCGGAG
1 GCGGAG
30795239 TAGAACAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.23, C:0.19, G:0.58, T:0.00
Consensus pattern (21 bp):
GCGGAGGCAGCAGCGAGGGAG
Found at i:30795576 original size:43 final size:43
Alignment explanation
Indices: 30795529--30795767 Score: 304
Period size: 43 Copynumber: 5.6 Consensus size: 43
30795519 ACTGGAAAAA
* *
30795529 TTAGCGGCATTTTTTAAAAAAGCGCCACTAAAAGTACAGGTCT
1 TTAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACGGGTCT
*
30795572 TTAGCGGCATTTTTTTTAAAAA-CGCCGC-AAAAGTACGGGTCT
1 TTAGCGGCA-TTTTTTAAAAAAGCGCCGCTAAAAGTACGGGTCT
*
30795614 TTAGCGGTATTTTTTAAAAAAGCGCCGCTAAAAGTACGGGTCT
1 TTAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACGGGTCT
* * * *
30795657 GTAGCGGCGTTTTTTAAAAAGGCGCCGCTAAAAGTACGGTTCT
1 TTAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACGGGTCT
* * * * * *
30795700 ATAGTGGCATTTTTT-ATAAAGCGCCGCTAAAGGTCCTGGTCT
1 TTAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACGGGTCT
* *
30795742 TTAGCGGCGTTTTTTATAAAAGCGCC
1 TTAGCGGCATTTTTTAAAAAAGCGCC
30795768 AAAAAAACTG
Statistics
Matches: 168, Mismatches: 24, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
41 11 0.07
42 60 0.36
43 86 0.51
44 11 0.07
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (43 bp):
TTAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACGGGTCT
Found at i:30795627 original size:85 final size:85
Alignment explanation
Indices: 30795529--30795767 Score: 295
Period size: 85 Copynumber: 2.8 Consensus size: 85
30795519 ACTGGAAAAA
*
30795529 TTAGCGGCATTTTTTAAAAAAGCGCCACTAAAAGTACAGGTCTTTAGCGGCATTTTTTTTAAAAA
1 TTAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTTTAGCGGC-TTTTTTTTAAAAA
30795594 CGCCGC-AAAAGTACGGGTCT
65 CGCCGCTAAAAGTACGGGTCT
* * * *
30795614 TTAGCGGTATTTTTTAAAAAAGCGCCGCTAAAAGTACGGGTCTGTAGCGGC-GTTTTTTAAAAAG
1 TTAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTTTAGCGGCTTTTTTTTAAAAA-
*
30795678 GCGCCGCTAAAAGTACGGTTCT
65 -CGCCGCTAAAAGTACGGGTCT
* * * * * * * *
30795700 ATAGTGGCATTTTTT-ATAAAGCGCCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTTTTATAAAAG
1 TTAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTTTAGCGGC-TTTTTTTTAAAAA
30795764 CGCC
65 CGCC
30795768 AAAAAAACTG
Statistics
Matches: 132, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
83 11 0.08
85 87 0.66
86 25 0.19
87 9 0.07
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (85 bp):
TTAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTTTAGCGGCTTTTTTTTAAAAAC
GCCGCTAAAAGTACGGGTCT
Found at i:30800146 original size:55 final size:55
Alignment explanation
Indices: 30800060--30800197 Score: 179
Period size: 55 Copynumber: 2.5 Consensus size: 55
30800050 GGCCGTGGTT
* *
30800060 GAGCCTGCCAAAACAACACAGGTGTGAGACACGCCCGTGTGGAAG-AACCGTGGGC
1 GAGCCTGCCAAAACAACACGGGCGTGAGACACGCCCGTGTGG-AGCAACCGTGGGC
* *
30800115 GAGCCTGCCAAAACAACACGGGCGTGTGACACGCCCGTGTGGAGCAACCGTGGTC
1 GAGCCTGCCAAAACAACACGGGCGTGAGACACGCCCGTGTGGAGCAACCGTGGGC
* ** **
30800170 GAACCTGTTAAATTAACACGGGCGTGAG
1 GAGCCTGCCAAAACAACACGGGCGTGAG
30800198 GTTTGCACAC
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
54 2 0.03
55 70 0.97
ACGTcount: A:0.28, C:0.27, G:0.32, T:0.14
Consensus pattern (55 bp):
GAGCCTGCCAAAACAACACGGGCGTGAGACACGCCCGTGTGGAGCAACCGTGGGC
Found at i:30807148 original size:41 final size:41
Alignment explanation
Indices: 30807087--30807183 Score: 140
Period size: 41 Copynumber: 2.4 Consensus size: 41
30807077 TAACCTGGGT
* * * *
30807087 CTGCTCACAGAAGCTGTCGGTCAGAATGTAGCTACACGGTG
1 CTGCTCACACAAGCTATCGGTCAGAACGTAGCTACACAGTG
* *
30807128 CTGCTCACACAAGCTATCGGTTAGAGCGTAGCTACACAGTG
1 CTGCTCACACAAGCTATCGGTCAGAACGTAGCTACACAGTG
30807169 CTGCTCACACAAGCT
1 CTGCTCACACAAGCT
30807184 GTCAAGTATC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.22
Consensus pattern (41 bp):
CTGCTCACACAAGCTATCGGTCAGAACGTAGCTACACAGTG
Found at i:30810990 original size:27 final size:28
Alignment explanation
Indices: 30810955--30811029 Score: 73
Period size: 27 Copynumber: 2.8 Consensus size: 28
30810945 TAGAGAGTCT
* * *
30810955 ATCGGGACATTAAACAA-GGGGTAGTTC
1 ATCGAGACATTAAACAATAGGATAGTTC
* *
30810982 ATTGAGACAATAAA-AATAGGATAGTTC
1 ATCGAGACATTAAACAATAGGATAGTTC
* *
30811009 ATCGAAACATTAAACACTAGG
1 ATCGAGACATTAAACAATAGG
30811030 TCGGCCGTCA
Statistics
Matches: 37, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
26 2 0.05
27 30 0.81
28 5 0.14
ACGTcount: A:0.43, C:0.13, G:0.21, T:0.23
Consensus pattern (28 bp):
ATCGAGACATTAAACAATAGGATAGTTC
Found at i:30813795 original size:13 final size:13
Alignment explanation
Indices: 30813777--30813801 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
30813767 ACCATTTAGG
30813777 GGCACACGGCCAA
1 GGCACACGGCCAA
30813790 GGCACACGGCCA
1 GGCACACGGCCA
30813802 TGTGCTGGGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.40, G:0.32, T:0.00
Consensus pattern (13 bp):
GGCACACGGCCAA
Found at i:30817047 original size:27 final size:27
Alignment explanation
Indices: 30817017--30817122 Score: 126
Period size: 27 Copynumber: 3.9 Consensus size: 27
30817007 GGCTGCCAAA
* *
30817017 ACAGATAATGTGACAGAGTCACCAGAT
1 ACAGATAATGTGGCAGAGCCACCAGAT
* *
30817044 ACAGATAATCGTGGCAAAGCCATCAGA-
1 ACAGATAAT-GTGGCAGAGCCACCAGAT
30817071 ACAGATATATGTGGCAGAGCCACCAGAT
1 ACAGATA-ATGTGGCAGAGCCACCAGAT
*
30817099 -CAGATAATTGTGGCATAGCCACCA
1 ACAGATAA-TGTGGCAGAGCCACCA
30817123 AGACGCTTCC
Statistics
Matches: 68, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
26 1 0.01
27 52 0.76
28 15 0.22
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.18
Consensus pattern (27 bp):
ACAGATAATGTGGCAGAGCCACCAGAT
Found at i:30817106 original size:54 final size:54
Alignment explanation
Indices: 30817016--30817119 Score: 156
Period size: 54 Copynumber: 1.9 Consensus size: 54
30817006 TGGCTGCCAA
*
30817016 AACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAAAGCCATCAG
1 AACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAAAGCCATCAG
* * *
30817070 AACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 AACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAAAGCCA
30817120 CCAAGACGCT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
54 27 0.60
55 18 0.40
ACGTcount: A:0.38, C:0.20, G:0.23, T:0.18
Consensus pattern (54 bp):
AACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAAAGCCATCAG
Found at i:30824396 original size:27 final size:26
Alignment explanation
Indices: 30824361--30824472 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
30824351 AGCATGGCTG
* *
30824361 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
30824387 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
* * *
30824415 CTAGAACTGATATATGTGGCAGAGCCT
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
30824442 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
30824469 CCAG
1 CCAG
30824473 GACGATTCCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 6 0.08
27 50 0.69
28 16 0.22
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:30824461 original size:54 final size:54
Alignment explanation
Indices: 30824363--30824469 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 54
30824353 CATGGCTGCC
*
30824363 AGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCACT
1 AGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACT
* * * * *
30824417 AGAACTGATATATGTGGCAGAGCCTCCAGAT-CAGATAATTGTGGCATAGCCAC
1 AGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCAC
30824470 CAGGACGATT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 29 0.63
55 17 0.37
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.20
Consensus pattern (54 bp):
AGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACT
Found at i:30825706 original size:17 final size:17
Alignment explanation
Indices: 30825686--30825718 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
30825676 GTTGATGAGG
30825686 AAAGAAAAAAGAAGAAA
1 AAAGAAAAAAGAAGAAA
*
30825703 AAAGAAAAAGGAAGAA
1 AAAGAAAAAAGAAGAA
30825719 TGGTCAGGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (17 bp):
AAAGAAAAAAGAAGAAA
Found at i:30826486 original size:50 final size:50
Alignment explanation
Indices: 30826423--30826517 Score: 136
Period size: 50 Copynumber: 1.9 Consensus size: 50
30826413 CGAAGCTCTA
* * * *
30826423 TGGTACGCATAGTAGCCTGCACTTATTACTACACATGCGACCTAACAATC
1 TGGTACACATAGTAGCCTACACTTAGTACTACACACGCGACCTAACAATC
* *
30826473 TGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAA
1 TGGTACACATAGTAGCCTACACTTAGTACTACACACGCGACCTAA
30826518 AACCGTCTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 39 1.00
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (50 bp):
TGGTACACATAGTAGCCTACACTTAGTACTACACACGCGACCTAACAATC
Found at i:30829157 original size:48 final size:50
Alignment explanation
Indices: 30828937--30829175 Score: 311
Period size: 50 Copynumber: 4.8 Consensus size: 50
30828927 TAAAATGCTG
* * * **
30828937 ATGCCATGTCCGAGACATGGTCTTACACTAGCTCTCATATATCGGTACTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGGTGCCA
30828987 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGGTGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGGTGCCA
* * *
30829037 ATGCCATGTTCTAGTCATGGTCTTACACTGGCTCTCATATATCGGTGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGGTGCCA
* * * ** *
30829087 ATGCCATGTCCCAGACAAGGTCTTACATTGGCTCACATA-A-CAATACCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGGTGCCA
* * *
30829135 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATATA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATA
30829176 ACCCTAGTAT
Statistics
Matches: 166, Mismatches: 22, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
48 39 0.23
49 2 0.01
50 125 0.75
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (50 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGGTGCCA
Found at i:30830055 original size:32 final size:32
Alignment explanation
Indices: 30830019--30830111 Score: 105
Period size: 32 Copynumber: 2.9 Consensus size: 32
30830009 TGAGTATGAG
**
30830019 ATTGGTACGGGATGATACAGGTATCTACGAAA
1 ATTGGTACAAGATGATACAGGTATCTACGAAA
* * *
30830051 ATTGGTACAATATGGTACAGGTATGTACGAAA
1 ATTGGTACAAGATGATACAGGTATCTACGAAA
* * * *
30830083 ATTGGTACAATATGGTACATGTATGTACG
1 ATTGGTACAAGATGATACAGGTATCTACG
30830112 GAGATTCAAT
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 55 1.00
ACGTcount: A:0.34, C:0.11, G:0.26, T:0.29
Consensus pattern (32 bp):
ATTGGTACAAGATGATACAGGTATCTACGAAA
Done.