Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 99 of 250
Found at i:32216264 original size:57 final size:57
Alignment explanation
Indices: 32216175--32216301 Score: 193
Period size: 57 Copynumber: 2.2 Consensus size: 57
32216165 TATAGTAAGT
*
32216175 CCGCACACTTAGTGTTATATAATCAAACTTGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATACA-AATCAAAC
* * * *
32216232 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATACAAATCAAAC
32216289 CCGCACACTTAGT
1 CCGCACACTTAGT
32216302 ACCAATCTCA
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 60 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATACAAATCAAAC
Found at i:32216274 original size:28 final size:28
Alignment explanation
Indices: 32216177--32216277 Score: 166
Period size: 28 Copynumber: 3.6 Consensus size: 28
32216167 TAGTAAGTCC
*
32216177 GCACACTTAGTGTTATATAATCAAACTT
1 GCACACTTAGTGCTATATAATCAAACTT
* *
32216205 GCACACTTAGTGCTTACATAATCAAACTC
1 GCACACTTAGTGC-TATATAATCAAACTT
32216234 GCACACTTAGTGCTATATAATCAAACTT
1 GCACACTTAGTGCTATATAATCAAACTT
32216262 GCACACTTAGTGCTAT
1 GCACACTTAGTGCTAT
32216278 GCAATTTAAA
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
28 41 0.61
29 26 0.39
ACGTcount: A:0.34, C:0.23, G:0.12, T:0.32
Consensus pattern (28 bp):
GCACACTTAGTGCTATATAATCAAACTT
Found at i:32219986 original size:100 final size:101
Alignment explanation
Indices: 32219872--32220068 Score: 342
Period size: 100 Copynumber: 2.0 Consensus size: 101
32219862 GAAGCTATCT
*
32219872 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATATGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATACGGTACACGTAGTAGCC
*
32219937 TGCACTTAGTACTTCACACGTGA-TCACAATTTTCA
66 TGCACTTAGTACTACACACGTGACTCACAATTTTCA
* *
32219972 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATACGGTACACGTAGTAGCC
32220037 TGCACTTAGTACTACACACGTGACCTCACAAT
66 TGCACTTAGTACTACACACGTGA-CTCACAAT
32220069 AGTTCATTTG
Statistics
Matches: 91, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
100 84 0.92
102 7 0.08
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (101 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATACGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGACTCACAATTTTCA
Found at i:32219995 original size:51 final size:49
Alignment explanation
Indices: 32219867--32220061 Score: 239
Period size: 49 Copynumber: 3.9 Consensus size: 49
32219857 TAGCCGAAGC
* * *
32219867 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCAGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * *
32219916 AAT-ATGGTACACGTAGTAGCCTGCACTTAGTACTTCACACGTGATCACAAT
1 TATCA-GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-C-CAAT
* * *
32219967 TTTCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCAGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * *
32220016 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCAGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
32220062 TCACAATAGT
Statistics
Matches: 122, Mismatches: 20, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
49 80 0.66
50 2 0.02
51 39 0.32
52 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCAGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:32232067 original size:45 final size:45
Alignment explanation
Indices: 32231989--32232154 Score: 162
Period size: 45 Copynumber: 3.6 Consensus size: 45
32231979 ATGCTGATCC
* * *
32231989 CATGTCCCAGACATGGTCTTACACTGGC-TCATCTCGTAGCTGATG
1 CATGTCCTA-ACATGGTCTTACACTAGCTTCATCTCGTAGCCGATG
* *
32232034 CATGTCCTAGCAT-GTCTTACACTAGCTTACATCTCG-AGGCCGATA
1 CATGTCCTAACATGGTCTTACACTAGCTT-CATCTCGTA-GCCGATG
*
32232079 CATGTCCTAAACAT-GTCTTACACTAGCTTTCATCTCAATA-CCGATG
1 CATGTCCT-AACATGGTCTTACACTAGC-TTCATCTC-GTAGCCGATG
*
32232125 CCATGTCCCAAACATGGTCTTACACTAGCT
1 -CATGT-CCTAACATGGTCTTACACTAGCT
32232155 CACAATAACC
Statistics
Matches: 102, Mismatches: 9, Indels: 18
0.79 0.07 0.14
Matches are distributed among these distances:
43 12 0.12
44 5 0.05
45 28 0.27
46 28 0.27
47 13 0.13
48 16 0.16
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.30
Consensus pattern (45 bp):
CATGTCCTAACATGGTCTTACACTAGCTTCATCTCGTAGCCGATG
Found at i:32232105 original size:46 final size:45
Alignment explanation
Indices: 32231989--32232154 Score: 160
Period size: 46 Copynumber: 3.6 Consensus size: 45
32231979 ATGCTGATCC
* * * *
32231989 CATGTCCCAGACATGGTCTTACACTGGC-TCATCTCGTAGCTGATG
1 CATGTCCCAAACATGGTCTTACACTAGCTTCATCTCG-AGCCGATA
* *
32232034 CATGT-CCTAGCAT-GTCTTACACTAGCTTACATCTCGAGGCCGATA
1 CATGTCCCAAACATGGTCTTACACTAGCTT-CATCTCGA-GCCGATA
* * * *
32232079 CATGTCCTAAACAT-GTCTTACACTAGCTTTCATCTCAATACCGATGC
1 CATGTCCCAAACATGGTCTTACACTAGC-TTCATCTCGA-GCCGAT-A
32232126 CATGTCCCAAACATGGTCTTACACTAGCT
1 CATGTCCCAAACATGGTCTTACACTAGCT
32232155 CACAATAACC
Statistics
Matches: 100, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
43 12 0.12
44 7 0.07
45 22 0.22
46 30 0.30
47 16 0.16
48 13 0.13
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.30
Consensus pattern (45 bp):
CATGTCCCAAACATGGTCTTACACTAGCTTCATCTCGAGCCGATA
Found at i:32236475 original size:43 final size:42
Alignment explanation
Indices: 32236417--32236554 Score: 195
Period size: 43 Copynumber: 3.2 Consensus size: 42
32236407 AAGATCAAGA
*
32236417 CTTTTAGCGGCGTTTGTGGGAAAAGTGCCGCTAAAAGTCATGG
1 CTTTTAGCGGCGTTTGTGGG-AAAGCGCCGCTAAAAGTCATGG
* * *
32236460 CTTTTAGCGGTGTTTGTAGGGGAAGCGCCGTTAAAAGTCATGG
1 CTTTTAGCGGCGTTTGT-GGGAAAGCGCCGCTAAAAGTCATGG
* *
32236503 CTTTTAGCGGCGTTTGTTGGGAAAGCGCCGCTAAAAGCCATGA
1 CTTTTAGCGGCGTTTG-TGGGAAAGCGCCGCTAAAAGTCATGG
32236546 CTTTTAGCG
1 CTTTTAGCG
32236555 ACGCTTTTTT
Statistics
Matches: 84, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
43 80 0.95
44 4 0.05
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (42 bp):
CTTTTAGCGGCGTTTGTGGGAAAGCGCCGCTAAAAGTCATGG
Found at i:32236954 original size:21 final size:21
Alignment explanation
Indices: 32236899--32236957 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
32236889 CTCTGCTCTA
*
32236899 CCTCCCTCGCTACTGCCACTG
1 CCTCCCTCGCTGCTGCCACTG
*
32236920 CCTCCCTCGCTGCTGCCCCTG
1 CCTCCCTCGCTGCTGCCACTG
**
32236941 CCTCCCTCTTTGCTGCC
1 CCTCCCTCGCTGCTGCC
32236958 TCAACTCTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.03, C:0.54, G:0.15, T:0.27
Consensus pattern (21 bp):
CCTCCCTCGCTGCTGCCACTG
Found at i:32242461 original size:9 final size:9
Alignment explanation
Indices: 32242447--32242739 Score: 329
Period size: 9 Copynumber: 33.7 Consensus size: 9
32242437 TAACTCTAAT
32242447 TAAGTTATG
1 TAAGTTATG
32242456 TAAGTTATG
1 TAAGTTATG
* * *
32242465 ATATGATATA
1 -TAAGTTATG
*
32242475 T-ATTTATG
1 TAAGTTATG
32242483 T-A-TTATG
1 TAAGTTATG
32242490 TAAGTTATG
1 TAAGTTATG
*
32242499 TAAATTATG
1 TAAGTTATG
*
32242508 TAAGTTCTG
1 TAAGTTATG
*
32242517 TAAGTTATA
1 TAAGTTATG
*
32242526 TGAGTTATG
1 TAAGTTATG
*
32242535 TGAGTTATG
1 TAAGTTATG
32242544 TAAGTTATG
1 TAAGTTATG
*
32242553 TAA---ATA
1 TAAGTTATG
32242559 TAAGTTATG
1 TAAGTTATG
32242568 TAAGTTATG
1 TAAGTTATG
*
32242577 TGAGTTATG
1 TAAGTTATG
*
32242586 TGAGTTATG
1 TAAGTTATG
*
32242595 TGAGTTATG
1 TAAGTTATG
32242604 T-A---A-G
1 TAAGTTATG
32242608 TAAGTTATG
1 TAAGTTATG
*
32242617 TGAGTTATG
1 TAAGTTATG
32242626 TAAGTTATG
1 TAAGTTATG
*
32242635 TAAGTTATA
1 TAAGTTATG
32242644 TAAGTTATG
1 TAAGTTATG
32242653 TAAGTTATG
1 TAAGTTATG
*
32242662 TGAGTTATG
1 TAAGTTATG
32242671 TAAGTTATG
1 TAAGTTATG
*
32242680 TGAGTTATG
1 TAAGTTATG
32242689 TAAGTTATG
1 TAAGTTATG
*
32242698 TAAGTTATA
1 TAAGTTATG
32242707 TAAGTTATG
1 TAAGTTATG
32242716 TAAGTTATG
1 TAAGTTATG
*
32242725 TGAGTTATG
1 TAAGTTATG
32242734 TAAGTT
1 TAAGTT
32242740 CAAGTATATA
Statistics
Matches: 243, Mismatches: 30, Indels: 22
0.82 0.10 0.07
Matches are distributed among these distances:
4 2 0.01
5 2 0.01
6 5 0.02
7 6 0.02
8 8 0.03
9 214 0.88
10 6 0.02
ACGTcount: A:0.32, C:0.00, G:0.23, T:0.45
Consensus pattern (9 bp):
TAAGTTATG
Found at i:32242616 original size:22 final size:22
Alignment explanation
Indices: 32242567--32242630 Score: 100
Period size: 22 Copynumber: 3.1 Consensus size: 22
32242557 TATAAGTTAT
32242567 GTAAGTTATGTGAGTTATGT--
1 GTAAGTTATGTGAGTTATGTAA
32242587 G--AGTTATGTGAGTTATGTAA
1 GTAAGTTATGTGAGTTATGTAA
32242607 GTAAGTTATGTGAGTTATGTAA
1 GTAAGTTATGTGAGTTATGTAA
32242629 GT
1 GT
32242631 TATGTAAGTT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
18 17 0.43
20 2 0.05
22 21 0.52
ACGTcount: A:0.28, C:0.00, G:0.30, T:0.42
Consensus pattern (22 bp):
GTAAGTTATGTGAGTTATGTAA
Found at i:32243051 original size:29 final size:28
Alignment explanation
Indices: 32243008--32243074 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 28
32242998 TCACATGGAA
*
32243008 AAAAAATTATTTTAATTAAATAATATTT
1 AAAAAATTATATTAATTAAATAATATTT
*
32243036 ATAAAAATTATATTAATTTAATAATATTT
1 A-AAAAATTATATTAATTAAATAATATTT
32243065 AAATAAATTA
1 AAA-AAATTA
32243075 ATCCAAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
28 3 0.09
29 32 0.91
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (28 bp):
AAAAAATTATATTAATTAAATAATATTT
Found at i:32243086 original size:39 final size:39
Alignment explanation
Indices: 32243020--32243134 Score: 176
Period size: 39 Copynumber: 2.9 Consensus size: 39
32243010 AAAATTATTT
* ** *
32243020 TAATTAAATAATATTTATAAAAATTATATTAATTTAATAA
1 TAATTAAATAA-ATTAATCCAAATTATATTAATTAAATAA
*
32243060 TATTTAAATAAATTAATCCAAATTATATTAATTAAATAA
1 TAATTAAATAAATTAATCCAAATTATATTAATTAAATAA
32243099 TAATTAAATAAATTAATCCAAATTATATTAATTAAA
1 TAATTAAATAAATTAATCCAAATTATATTAATTAAA
32243135 ATAAGATTGA
Statistics
Matches: 69, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 59 0.86
40 10 0.14
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (39 bp):
TAATTAAATAAATTAATCCAAATTATATTAATTAAATAA
Found at i:32243092 original size:19 final size:18
Alignment explanation
Indices: 32243040--32243133 Score: 73
Period size: 19 Copynumber: 4.9 Consensus size: 18
32243030 ATATTTATAA
32243040 AAATTATATTAATTTAAT-
1 AAATTATATTAA-TTAATC
* *
32243058 AATATTTAAATAAATTAATCC
1 AA-A-TTATATTAATTAAT-C
*
32243079 AAATTATATTAATTAAATA
1 AAATTATATTAATT-AATC
* *
32243098 ATAATTAAATAAATTAATCC
1 A-AATTATATTAATTAAT-C
32243118 AAATTATATTAATTAA
1 AAATTATATTAATTAA
32243134 AATAAGATTG
Statistics
Matches: 59, Mismatches: 10, Indels: 13
0.72 0.12 0.16
Matches are distributed among these distances:
18 2 0.03
19 32 0.54
20 23 0.39
21 2 0.03
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.41
Consensus pattern (18 bp):
AAATTATATTAATTAATC
Found at i:32243137 original size:68 final size:68
Alignment explanation
Indices: 32243011--32243138 Score: 154
Period size: 68 Copynumber: 1.9 Consensus size: 68
32243001 CATGGAAAAA
* * * * *
32243011 AAATTATTTTAATTAAATAATATTTATAAAAATTATATTAATTTAATAATATTTAAATAAATTAA
1 AAATTATATTAATTAAATAATAATTATAAAAATTATATCAAATTAATAATATTAAAATAAATTAA
32243076 TCC
66 TCC
*
32243079 AAATTATATTAATTAAATAATAATTA-AATAAATTA-ATCCAAATT-ATATTAATTAAAATAA
1 AAATTATATTAATTAAATAATAATTATAA-AAATTATAT-CAAATTAATAAT-ATTAAAATAA
32243139 GATTGAACAT
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
67 8 0.16
68 43 0.84
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (68 bp):
AAATTATATTAATTAAATAATAATTATAAAAATTATATCAAATTAATAATATTAAAATAAATTAA
TCC
Found at i:32243689 original size:15 final size:15
Alignment explanation
Indices: 32243671--32243701 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
32243661 TCAATTCCAG
32243671 CAAATTAAATTACAC
1 CAAATTAAATTACAC
32243686 CAAATTAAATTACAC
1 CAAATTAAATTACAC
32243701 C
1 C
32243702 TACAAACAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.52, C:0.23, G:0.00, T:0.26
Consensus pattern (15 bp):
CAAATTAAATTACAC
Found at i:32246785 original size:27 final size:27
Alignment explanation
Indices: 32246747--32246801 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
32246737 TCTTTTAATA
32246747 GATTTTTGTGGCGTTTCTAGCGAAAAT
1 GATTTTTGTGGCGTTTCTAGCGAAAAT
32246774 GATTTTTGTGGCGTTTCTAGCGAAAAT
1 GATTTTTGTGGCGTTTCTAGCGAAAAT
32246801 G
1 G
32246802 CCTGTATTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.22, C:0.11, G:0.27, T:0.40
Consensus pattern (27 bp):
GATTTTTGTGGCGTTTCTAGCGAAAAT
Found at i:32247614 original size:21 final size:21
Alignment explanation
Indices: 32247589--32247642 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
32247579 TTACTAAGGT
*
32247589 TTTATGGTTTTGGATTTAGGG
1 TTTATGGTTTTAGATTTAGGG
*
32247610 TTTATGGTTTAAGATTTAGGG
1 TTTATGGTTTTAGATTTAGGG
*
32247631 TTTATAGTTTTA
1 TTTATGGTTTTA
32247643 AGTTTTATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.20, C:0.00, G:0.26, T:0.54
Consensus pattern (21 bp):
TTTATGGTTTTAGATTTAGGG
Found at i:32247796 original size:21 final size:21
Alignment explanation
Indices: 32247735--32247796 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
32247725 ACTGTCTATA
* *
32247735 GTTTAGGGTTTTATGGTTTAGG
1 GTTTAAGG-TTTATAGTTTAGG
* *
32247757 ATTCAAGGTTTAATA-TTTAGG
1 GTTTAAGGTTT-ATAGTTTAGG
32247778 GTTTAAGGTTTATAGTTTA
1 GTTTAAGGTTTATAGTTTA
32247797 TGATTTATGA
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
20 3 0.09
21 22 0.69
22 7 0.22
ACGTcount: A:0.24, C:0.02, G:0.26, T:0.48
Consensus pattern (21 bp):
GTTTAAGGTTTATAGTTTAGG
Found at i:32247803 original size:21 final size:21
Alignment explanation
Indices: 32247744--32247803 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
32247734 AGTTTAGGGT
* *
32247744 TTTATGGTTTAGGATTCAAGG
1 TTTATAGTTTAGGATTTAAGG
*
32247765 TTTAATA-TTTAGGGTTTAAGG
1 TTT-ATAGTTTAGGATTTAAGG
*
32247786 TTTATAGTTTATGATTTA
1 TTTATAGTTTAGGATTTA
32247804 TGACTAGAGA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
20 3 0.09
21 27 0.84
22 2 0.06
ACGTcount: A:0.27, C:0.02, G:0.22, T:0.50
Consensus pattern (21 bp):
TTTATAGTTTAGGATTTAAGG
Found at i:32248719 original size:154 final size:155
Alignment explanation
Indices: 32248420--32248730 Score: 373
Period size: 154 Copynumber: 2.0 Consensus size: 155
32248410 AAAACCCAAA
*
32248420 CTATTGCGGCATTTTCTAAGGAAGCACCGCTAATGCCACTAAATCTCAAAATAAACGACGTTGTT
1 CTATTGCGGCATTTTCTAAGGAAGCACCGCTAATGCCACTAAATCTCAAAATAAACGACGTCGTT
* * *
32248485 CTGTTTAATCTTTTAGCGGCGTTTTTTTAAAAACGCCGCTATAGATCGACCTACAGCGGCGCTTT
66 CTCTTTAATCTTTTAGCGGCGTTTTTTAAAAAACGCCGCTATAGATCAACCTACAGCGGCGCTTT
*
32248550 GTTAAAAACGCCGCTAATG-TTGGAT
131 CTTAAAAACGCCGCTAATGCTT-GAT
** * * * *
32248575 CTATTGCGGCATTTT-TCGGGAAGCGCCGCTAATGCCACTGAAGT-TCAGAAA-AAATGATGTCG
1 CTATTGCGGCATTTTCTAAGGAAGCACCGCTAATGCCACT-AAATCTCA-AAATAAACGACGTCG
* * * **
32248637 TTCTCTTTAATCTTTTAGTGGCG-TTTTTAAAAAAGCGCCGCTATAGGTCAATCTTTAGCGGCG-
64 TTCTCTTTAATCTTTTAGCGGCGTTTTTTAAAAAA-CGCCGCTATAGATCAACCTACAGCGGCGC
* *
32248700 TTTCCTTAAAAATGTCGCTAATGCTTGAT
128 TTT-CTTAAAAACGCCGCTAATGCTTGAT
32248729 CT
1 CT
32248731 TTAGCAGCGC
Statistics
Matches: 133, Mismatches: 18, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
153 13 0.10
154 97 0.73
155 23 0.17
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.32
Consensus pattern (155 bp):
CTATTGCGGCATTTTCTAAGGAAGCACCGCTAATGCCACTAAATCTCAAAATAAACGACGTCGTT
CTCTTTAATCTTTTAGCGGCGTTTTTTAAAAAACGCCGCTATAGATCAACCTACAGCGGCGCTTT
CTTAAAAACGCCGCTAATGCTTGAT
Found at i:32248761 original size:40 final size:40
Alignment explanation
Indices: 32248687--32248770 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
32248677 CTATAGGTCA
* * * * * *
32248687 ATCTTTAGCGGCGTTTCCTTAAAAATGTCGCTAATGCTTG
1 ATCTTTAGCAGCGTTTCCATAAAAATGCCACTAATACTCG
32248727 ATCTTTAGCAGCGCTTT-CATAAAAATGCCACTAATACTCG
1 ATCTTTAGCAGCG-TTTCCATAAAAATGCCACTAATACTCG
32248767 ATCT
1 ATCT
32248771 ATTTGATTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
40 34 0.92
41 3 0.08
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (40 bp):
ATCTTTAGCAGCGTTTCCATAAAAATGCCACTAATACTCG
Found at i:32253241 original size:46 final size:46
Alignment explanation
Indices: 32253191--32253363 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
32253181 TGGTTGAGCA
*
32253191 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
32253237 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
32253284 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
32253330 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
32253364 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:32253347 original size:93 final size:93
Alignment explanation
Indices: 32253188--32253358 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
32253178 GGATGGTTGA
* *
32253188 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
32253253 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
32253281 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
32253346 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
32253359 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:32253625 original size:19 final size:20
Alignment explanation
Indices: 32253588--32253625 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
32253578 ATAAGGTGGT
32253588 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
32253608 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
32253626 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:32257662 original size:46 final size:46
Alignment explanation
Indices: 32257612--32257784 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
32257602 TGGTTGAGCA
*
32257612 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
32257658 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
32257705 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
32257751 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
32257785 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:32257768 original size:93 final size:93
Alignment explanation
Indices: 32257609--32257779 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
32257599 GGATGGTTGA
* *
32257609 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
32257674 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
32257702 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
32257767 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
32257780 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:32258046 original size:19 final size:20
Alignment explanation
Indices: 32258009--32258046 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
32257999 ATAAAGTGGT
32258009 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
32258029 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
32258047 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:32262462 original size:27 final size:27
Alignment explanation
Indices: 32262424--32262478 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
32262414 AGGTCTATTA
32262424 TGTAAATCGAGGGTAAAACGGAAATTC
1 TGTAAATCGAGGGTAAAACGGAAATTC
* *
32262451 TGTAAATCGAGGGTAAAATGGTAATTC
1 TGTAAATCGAGGGTAAAACGGAAATTC
32262478 T
1 T
32262479 ACAAATTGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.38, C:0.09, G:0.25, T:0.27
Consensus pattern (27 bp):
TGTAAATCGAGGGTAAAACGGAAATTC
Found at i:32262484 original size:27 final size:27
Alignment explanation
Indices: 32262427--32262490 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
32262417 TCTATTATGT
**
32262427 AAATCGAGGGTAAAACGGAAATTCTGT
1 AAATCGAGGGTAAAACGGAAATTCTAC
* *
32262454 AAATCGAGGGTAAAATGGTAATTCTAC
1 AAATCGAGGGTAAAACGGAAATTCTAC
*
32262481 AAATTGAGGG
1 AAATCGAGGG
32262491 CATTTCAGTA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.41, C:0.09, G:0.27, T:0.23
Consensus pattern (27 bp):
AAATCGAGGGTAAAACGGAAATTCTAC
Found at i:32264361 original size:619 final size:619
Alignment explanation
Indices: 32263182--32264421 Score: 2435
Period size: 619 Copynumber: 2.0 Consensus size: 619
32263172 AAATTGCAAA
*
32263182 AGCCAAGGCTTGAACCCATGCTTCCATACAACCTTAATGACGCCACAACCACTAGACTACAAGCT
1 AGCCAAGGCTTGAACCCATGCTCCCATACAACCTTAATGACGCCACAACCACTAGACTACAAGCT
32263247 TCCCTGTGTCATTTATTTAACACAATAATTTAAAAGCCCTCATCCAAGCATCCAGGCTTTTTTCT
66 TCCCTGTGTCATTTATTTAACACAATAATTTAAAAGCCCTCATCCAAGCATCCAGGCTTTTTTCT
32263312 CTTAATACCAAAATTTTTGCTAAAGCCCAAGTTTGAACCCAAGATTTCTCTAACACTTCTCAGGG
131 CTTAATACCAAAATTTTTGCTAAAGCCCAAGTTTGAACCCAAGATTTCTCTAACACTTCTCAGGG
32263377 CCATTAGCCACTAAAGCAGACATTTAATTGTGTTATTTCATTGCACAATTAAATACCTATATACA
196 CCATTAGCCACTAAAGCAGACATTTAATTGTGTTATTTCATTGCACAATTAAATACCTATATACA
32263442 ACCTCCTTACGGACCTGCACTCAAGGCCCAATACTTCTAGGCCCAAATTCGGGGTGTTACAATTC
261 ACCTCCTTACGGACCTGCACTCAAGGCCCAATACTTCTAGGCCCAAATTCGGGGTGTTACAATTC
*
32263507 TACCCCCTTAAAGAAATTTCGTCCTCGAAATTTTCCACTCTCAAACTACACCACTACACTTCCGC
326 TACCCCCTTAAAGAAATTTCGTCCTCGAAAGTTTCCACTCTCAAACTACACCACTACACTTCCGC
32263572 TGCGCACTCTGATACTAATAATACTAACATACACCCAAAACATTTATCCATCGGAGCGGATAGAT
391 TGCGCACTCTGATACTAATAATACTAACATACACCCAAAACATTTATCCATCGGAGCGGATAGAT
32263637 TTCACAAGCAAACAATTTCTACATTTCCAGAAGCACACCAAATAAATACTAAATCTAAATTCAAG
456 TTCACAAGCAAACAATTTCTACATTTCCAGAAGCACACCAAATAAATACTAAATCTAAATTCAAG
32263702 CGTTACAGTTTACTCTAACTAGAAAGTTCCAGTATAGTGCTACTATCTATAGTGGTTTCTCAATA
521 CGTTACAGTTTACTCTAACTAGAAAGTTCCAGTATAGTGCTACTATCTATAGTGGTTTCTCAATA
32263767 TAGCATTTCAATCTATAACAGTAAACTGAGTTAG
586 TAGCATTTCAATCTATAACAGTAAACTGAGTTAG
*
32263801 AGCCAAGGCTTGAACCCATGCTCCCATACAACCTTAATGACGCCACAACCACTATACTACAAGCT
1 AGCCAAGGCTTGAACCCATGCTCCCATACAACCTTAATGACGCCACAACCACTAGACTACAAGCT
*
32263866 TCCCTGTGTCATTTATTTAACACAATAATTTAAAAGCCCTCATCCAAGCATCCAGGTTTTTTTCT
66 TCCCTGTGTCATTTATTTAACACAATAATTTAAAAGCCCTCATCCAAGCATCCAGGCTTTTTTCT
32263931 CTTAATACCAAAATTTTTGCTAAAGCCCAAGTTTGAACCCAAGATTTCTCTAACACTTCTCAGGG
131 CTTAATACCAAAATTTTTGCTAAAGCCCAAGTTTGAACCCAAGATTTCTCTAACACTTCTCAGGG
32263996 CCATTAGCCACTAAAGCAGACATTTAATTGTGTTATTTCATTGCACAATTAAATACCTATATACA
196 CCATTAGCCACTAAAGCAGACATTTAATTGTGTTATTTCATTGCACAATTAAATACCTATATACA
32264061 ACCTCCTTACGGACCTGCACTCAAGGCCCAATACTTCTAGGCCCAAATTCGGGGTGTTACAATTC
261 ACCTCCTTACGGACCTGCACTCAAGGCCCAATACTTCTAGGCCCAAATTCGGGGTGTTACAATTC
32264126 TACCCCCTTAAAGAAATTTCGTCCTCGAAAGTTTCCACTCTCAAACTACACCACTACACTTCCGC
326 TACCCCCTTAAAGAAATTTCGTCCTCGAAAGTTTCCACTCTCAAACTACACCACTACACTTCCGC
32264191 TGCGCACTCTGATACTAATAATACTAACATACACCCAAAACATTTATCCATCGGAGCGGATAGAT
391 TGCGCACTCTGATACTAATAATACTAACATACACCCAAAACATTTATCCATCGGAGCGGATAGAT
*
32264256 TTCACAAGCAAACAATTTCTACATTTCCAGCAGCACACCAAATAAATACTAAATCTAAATTCAAG
456 TTCACAAGCAAACAATTTCTACATTTCCAGAAGCACACCAAATAAATACTAAATCTAAATTCAAG
32264321 CGTTACAGTTTACTCTAACTAGAAAGTTCCAGTATAGTGCTACTATCTATAGTGGTTTCTCAATA
521 CGTTACAGTTTACTCTAACTAGAAAGTTCCAGTATAGTGCTACTATCTATAGTGGTTTCTCAATA
32264386 TAGCATTTCAATCTATAACAGTAAACTGAGTTAG
586 TAGCATTTCAATCTATAACAGTAAACTGAGTTAG
32264420 AG
1 AG
32264422 GACTTACAGA
Statistics
Matches: 616, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
619 616 1.00
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (619 bp):
AGCCAAGGCTTGAACCCATGCTCCCATACAACCTTAATGACGCCACAACCACTAGACTACAAGCT
TCCCTGTGTCATTTATTTAACACAATAATTTAAAAGCCCTCATCCAAGCATCCAGGCTTTTTTCT
CTTAATACCAAAATTTTTGCTAAAGCCCAAGTTTGAACCCAAGATTTCTCTAACACTTCTCAGGG
CCATTAGCCACTAAAGCAGACATTTAATTGTGTTATTTCATTGCACAATTAAATACCTATATACA
ACCTCCTTACGGACCTGCACTCAAGGCCCAATACTTCTAGGCCCAAATTCGGGGTGTTACAATTC
TACCCCCTTAAAGAAATTTCGTCCTCGAAAGTTTCCACTCTCAAACTACACCACTACACTTCCGC
TGCGCACTCTGATACTAATAATACTAACATACACCCAAAACATTTATCCATCGGAGCGGATAGAT
TTCACAAGCAAACAATTTCTACATTTCCAGAAGCACACCAAATAAATACTAAATCTAAATTCAAG
CGTTACAGTTTACTCTAACTAGAAAGTTCCAGTATAGTGCTACTATCTATAGTGGTTTCTCAATA
TAGCATTTCAATCTATAACAGTAAACTGAGTTAG
Found at i:32265124 original size:27 final size:27
Alignment explanation
Indices: 32265086--32265179 Score: 161
Period size: 27 Copynumber: 3.5 Consensus size: 27
32265076 AGGTCCATTA
32265086 TGTAAATCGAGGGTAAAATGGTAATTC
1 TGTAAATCGAGGGTAAAATGGTAATTC
*
32265113 TGTAAATCGAGGGTAAAATGGTAATTT
1 TGTAAATCGAGGGTAAAATGGTAATTC
32265140 TGTAAATCGAGGGTAAAATGGTAATTC
1 TGTAAATCGAGGGTAAAATGGTAATTC
**
32265167 TACAAATCGAGGG
1 TGTAAATCGAGGG
32265180 CATTTCAGTA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 63 1.00
ACGTcount: A:0.37, C:0.07, G:0.27, T:0.29
Consensus pattern (27 bp):
TGTAAATCGAGGGTAAAATGGTAATTC
Found at i:32267818 original size:818 final size:823
Alignment explanation
Indices: 32266224--32267820 Score: 2749
Period size: 818 Copynumber: 1.9 Consensus size: 823
32266214 CGTCCTCGAA
* *
32266224 ATTTTCCACTCTCAAACTACACCACTACACTTCCGCTGCGCACTCTGATACTAATAATACTAACA
1 ATTTTCCACTCTCAAAATACACCACCACACTTCCGCTGCGCACTCTGATACTAATAATACTAACA
32266289 TACACCCAAAACATTTATCCATCGGAGCGGATAGATTTCACAAGCAAACAATTTCTACATTTCCA
66 TACACCCAAAACATTTATCCATCGGAGCGGATAGATTTCACAAGCAAACAATTTCTACATTTCCA
*
32266354 GAAGCACACCAAATAAATACTAAATCTAAATTCAAGCGTTACAGTTTACTCTAACTAGAAAGTTC
131 GAAGCACACCAAATAAATACTAAATCTAAATTCAAGCGCTACAGTTTACTCTAACTAGAAAGTTC
32266419 CAGTATAGTGCTACTATCTATAGTGGTTTCTCAATATAGCATTTCAATCTATAACAGTAAACTGA
196 CAGTATAGTGCTACTATCTATAGTGGTTTCTCAATATAGCATTTCAATCTATAACAGTAAACTGA
* *
32266484 GTTAGAGGACTTACAGATTTGGTGCCGGAGACTCGGTGTGCCACACTTCCAATAACATCTTTCCA
261 GTTAGAGAACTTACAGATTTGGTGCCGGAGACTCAGTGTGCCACACTTCCAATAACATCTTTCCA
* **
32266549 GAAACAAGTCAGGTTTTGTTGATAAATTTCAAAACAAAATTTTTAGAAAAACCCTTTTCAAACCC
326 GAAACAAGTCAAGTTTTGTTGATAAATTTCAAAACAAAAAATTTAGAAAAACCCTTTTCAAACCC
* *
32266614 CAATTTCAAAAAAAGAAAAAAAATAACAATAATTTTTTGCTACCCATACCCAGTCGAGTTTTGTA
391 CAATTTCAAAAAAAG-AAAAAAATAACAATAA--TATTGC-A-CC--ACCCAGCCGAGTTTTGTA
* * *
32266679 ACCTGGCTCTGATACCACTAAATGTAACACCCCAAACTCGGCCCAAACGTTATGGCCGGATCTGA
449 ACCTGGCTCTGATACCACTAAATGTAACACCCCAAACCCGGCCCAAACGTTATGGCCAGATCCGA
* * *
32266744 CGTGTCACATTGAAGTTTTTAAGAAAACCCATGCCTCTTTCAACGTCCTTCTTAGTGTTTTAAAA
514 CATGTCACATTGAAGTTTTTAAGAAAACCCATGCCTCTTTCAACATCCTTCTTAGTGTTCTAAAA
* *
32266809 GATAGTCTTTTCTAAGTTAATAAAGTGAATGGAAGCTGTGCACCAGGTAGGTATCCGAAACAGAG
579 GATAGTCTTTGCTAAGTTAATAAAGTGAATAGAAGCTGTGCACCAGGTAGGTATCCGAAACAGAG
32266874 GAGGTGAGCCTATCCACAATTACCCAAACTAAATCCTTCTTGGAAGATGTCAATGGCAACCCACT
644 GAGGTGAGCCTATCCACAATTACCCAAACTAAATCCTTCTTGGAAGATGTCAATGGCAACCCACT
* * *
32266939 TACAAAATCTATAGTTACCCTTTCCCACTTCCAAAGTGGTATCTTTACCGGCTGTAACAATCCTG
709 TACAAAATCCATAGTTACCCTTTCCCAATTCCAAAGTGGTATCTTTACCGGCTGCAACAATCCTG
32267004 AACCCAAGATTGCAAGAGCCAAGGCTTGAACCCATGCTTGAACCCAAAAC
774 AACCCAAGATTGCAAGAGCCAAGGCTTGAACCCATGCTTGAACCCAAAAC
* * *
32267054 ATTTATCCACTCTCAAAATACACCACCACATTTTCGCTGCGCAGTCTGATACTAATAATACTAAC
1 ATTT-TCCACTCTCAAAATACACCACCACACTTCCGCTGCGCACTCTGATACTAATAATACTAAC
* *
32267119 ATACACCCAAAACATTTATCCATCGGAGCGGATAGATTTCACATGCAAACAATTTCTACATTTCT
65 ATACACCCAAAACATTTATCCATCGGAGCGGATAGATTTCACAAGCAAACAATTTCTACATTTCC
* *
32267184 AGAATGCACACCAAATAAATACTAAATTTAAATTGAAGCGCTACAGTTTACTCTAACTAGAAAGT
130 AGAA-GCACACCAAATAAATACTAAATCTAAATTCAAGCGCTACAGTTTACTCTAACTAGAAAGT
32267249 TCCAGTATAGTGCTACTATCTATAGTGGTTTCTCAATATAGCATTTCAATCTATAACAGTAAACT
194 TCCAGTATAGTGCTACTATCTATAGTGGTTTCTCAATATAGCATTTCAATCTATAACAGTAAACT
32267314 GAGTTAGAGAACTTACAGATTTGGTGCCGGAGACTCAGTGTGCCACACTTCCAATAACATCTTTC
259 GAGTTAGAGAACTTACAGATTTGGTGCCGGAGACTCAGTGTGCCACACTTCCAATAACATCTTTC
*
32267379 TAGAAACAAGTCAAGTTTTGTTGATAAATTTCAAAA-AAAAAATTTAGAAAAACCCTTTTCAAAC
324 CAGAAACAAGTCAAGTTTTGTTGATAAATTTCAAAACAAAAAATTTAGAAAAACCCTTTTCAAAC
* *
32267443 CCCAATTTCAGAAAAAG-AAAAAATAGCAA-AA-ATTG-A-C-CCCAGCCGAGTTTTGTAACCTG
389 CCCAATTTCAAAAAAAGAAAAAAATAACAATAATATTGCACCACCCAGCCGAGTTTTGTAACCTG
*
32267502 GCTCTGATACCACTAAATGTAACACCCCAAACCCGGCCCAGACGTTATGGCCAGATCCGACATGT
454 GCTCTGATACCACTAAATGTAACACCCCAAACCCGGCCCAAACGTTATGGCCAGATCCGACATGT
32267567 CACATTGAAGTTTTTAAGAAAACCCATGCCTCTTTCAACATCCTTCTTAGTGTTCTAAAAGATAG
519 CACATTGAAGTTTTTAAGAAAACCCATGCCTCTTTCAACATCCTTCTTAGTGTTCTAAAAGATAG
*
32267632 TCTTTGCTAAGTTAATAAAGTGAATAGAAGCTGTGCACCAGGTAGGTATCCGAAATAGAGGAGGT
584 TCTTTGCTAAGTTAATAAAGTGAATAGAAGCTGTGCACCAGGTAGGTATCCGAAACAGAGGAGGT
* *
32267697 GAGCCTATTCACAATTACCCAAACTAAATCCTTCTTGGAAGGTGTCAATGGCAACCCACTTACAA
649 GAGCCTATCCACAATTACCCAAACTAAATCCTTCTTGGAAGATGTCAATGGCAACCCACTTACAA
32267762 AATCCATAGTTACCCTTTCCCAATTCCAAAGTGGTATCTTTACCGGCTGCAACAATCCT
714 AATCCATAGTTACCCTTTCCCAATTCCAAAGTGGTATCTTTACCGGCTGCAACAATCCT
32267821 AAAGGCAGTT
Statistics
Matches: 730, Mismatches: 35, Indels: 16
0.93 0.04 0.02
Matches are distributed among these distances:
818 325 0.45
821 1 0.00
823 1 0.00
825 3 0.00
828 2 0.00
829 11 0.02
830 4 0.01
831 164 0.22
832 219 0.30
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.28
Consensus pattern (823 bp):
ATTTTCCACTCTCAAAATACACCACCACACTTCCGCTGCGCACTCTGATACTAATAATACTAACA
TACACCCAAAACATTTATCCATCGGAGCGGATAGATTTCACAAGCAAACAATTTCTACATTTCCA
GAAGCACACCAAATAAATACTAAATCTAAATTCAAGCGCTACAGTTTACTCTAACTAGAAAGTTC
CAGTATAGTGCTACTATCTATAGTGGTTTCTCAATATAGCATTTCAATCTATAACAGTAAACTGA
GTTAGAGAACTTACAGATTTGGTGCCGGAGACTCAGTGTGCCACACTTCCAATAACATCTTTCCA
GAAACAAGTCAAGTTTTGTTGATAAATTTCAAAACAAAAAATTTAGAAAAACCCTTTTCAAACCC
CAATTTCAAAAAAAGAAAAAAATAACAATAATATTGCACCACCCAGCCGAGTTTTGTAACCTGGC
TCTGATACCACTAAATGTAACACCCCAAACCCGGCCCAAACGTTATGGCCAGATCCGACATGTCA
CATTGAAGTTTTTAAGAAAACCCATGCCTCTTTCAACATCCTTCTTAGTGTTCTAAAAGATAGTC
TTTGCTAAGTTAATAAAGTGAATAGAAGCTGTGCACCAGGTAGGTATCCGAAACAGAGGAGGTGA
GCCTATCCACAATTACCCAAACTAAATCCTTCTTGGAAGATGTCAATGGCAACCCACTTACAAAA
TCCATAGTTACCCTTTCCCAATTCCAAAGTGGTATCTTTACCGGCTGCAACAATCCTGAACCCAA
GATTGCAAGAGCCAAGGCTTGAACCCATGCTTGAACCCAAAAC
Found at i:32268014 original size:27 final size:27
Alignment explanation
Indices: 32267976--32268067 Score: 130
Period size: 27 Copynumber: 3.4 Consensus size: 27
32267966 GTCCATTATG
* *
32267976 TAAATCGAGGGTAAAACGATAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
* *
32268003 TAAATCGAGGGTAAAATGGTAATTTTG
1 TAAATCGAGGGTAAAATGGTAATTCTA
*
32268030 TAAATCAAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
*
32268057 CAAATCGAGGG
1 TAAATCGAGGG
32268068 CATTTCAGTA
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.27
Consensus pattern (27 bp):
TAAATCGAGGGTAAAATGGTAATTCTA
Found at i:32269482 original size:27 final size:27
Alignment explanation
Indices: 32269452--32269512 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
32269442 AAAGCATGTG
32269452 AAAAAGAAAAAAAGGAT-GAAAGA-AATC
1 AAAAAGAAAAAAA-GATCGAAAGAGAA-C
* *
32269479 AAAAGGAAAAAGAGATCGAAAGAGAAC
1 AAAAAGAAAAAAAGATCGAAAGAGAAC
32269506 AAAAAGA
1 AAAAAGA
32269513 GATTGAGAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 3 0.10
27 24 0.83
28 2 0.07
ACGTcount: A:0.69, C:0.05, G:0.21, T:0.05
Consensus pattern (27 bp):
AAAAAGAAAAAAAGATCGAAAGAGAAC
Found at i:32269620 original size:52 final size:52
Alignment explanation
Indices: 32269558--32269661 Score: 190
Period size: 52 Copynumber: 2.0 Consensus size: 52
32269548 AGAGTGAGAG
32269558 AATGCAAAAAGAGATCGAGAATATGAAAGAAACGAATGAAAAAGATGAAAGT
1 AATGCAAAAAGAGATCGAGAATATGAAAGAAACGAATGAAAAAGATGAAAGT
* *
32269610 AATGCAAAAAGAGATCGAGAATGTGAAAGAAACGAATGAAAAAGATGGAAGT
1 AATGCAAAAAGAGATCGAGAATATGAAAGAAACGAATGAAAAAGATGAAAGT
32269662 GAGCAAGAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.56, C:0.06, G:0.25, T:0.13
Consensus pattern (52 bp):
AATGCAAAAAGAGATCGAGAATATGAAAGAAACGAATGAAAAAGATGAAAGT
Found at i:32281930 original size:46 final size:46
Alignment explanation
Indices: 32281810--32281933 Score: 148
Period size: 47 Copynumber: 2.7 Consensus size: 46
32281800 TAACCCGCCC
32281810 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAGTTACAT
* * *
32281858 CTCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-C-A-TTCGCAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTT-ACAT
32281901 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 -C-TAAGTGAACTCGGACTCAACTCAACGAGTT
32281934 TGGATGCTCA
Statistics
Matches: 67, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
44 2 0.03
45 2 0.03
46 25 0.37
47 29 0.43
48 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACAT
Found at i:32281956 original size:46 final size:44
Alignment explanation
Indices: 32281813--32281956 Score: 132
Period size: 46 Copynumber: 3.1 Consensus size: 44
32281803 CCCGCCCCTA
32281813 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
32281860 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
*
32281906 AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
32281952 AGTGA
1 AGTGA
32281957 CATGTCACTT
Statistics
Matches: 79, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 32 0.41
47 31 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:32289457 original size:93 final size:91
Alignment explanation
Indices: 32289300--32289468 Score: 302
Period size: 93 Copynumber: 1.8 Consensus size: 91
32289290 GCCCCTAAGT
* *
32289300 GAACTCGGACTCAACTCAACGAGCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
1 GAACTCGGACTCAACTCAACGAGCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
32289365 AGTTCGGATGCCTAGTTACATCTCAC
66 AGTTCGGATGCCTAGTTACATCTCAC
32289391 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAG--CGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32289456 CGAGTTCGGATGC
64 CGAGTTCGGATGC
32289469 TCAACCATCC
Statistics
Matches: 74, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
91 23 0.31
93 51 0.69
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATCTCAC
Found at i:32289458 original size:46 final size:46
Alignment explanation
Indices: 32289295--32289465 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
32289285 AACCCGCCCC
* *
32289295 TAAGTGAACTCGGACTCAACTCAACGAG--CGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
32289339 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
32289387 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
32289432 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32289466 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 8, Indels: 20
0.79 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 30 0.28
45 2 0.02
46 32 0.30
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:32289484 original size:46 final size:46
Alignment explanation
Indices: 32289294--32289477 Score: 152
Period size: 44 Copynumber: 4.0 Consensus size: 46
32289284 TAACCCGCCC
** * *
32289294 CTAAGTGAACTCGGACTCAACTCAACGAG--CGGGCGTTC--GCAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
32289336 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CAT
1 -C-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCAT
* * * * *
32289386 CTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA-
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCAT
32289432 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
32289477 C
1 C
32289478 CTAGTGACAT
Statistics
Matches: 113, Mismatches: 12, Indels: 29
0.73 0.08 0.19
Matches are distributed among these distances:
43 1 0.01
44 36 0.32
45 3 0.03
46 32 0.28
47 30 0.27
48 2 0.02
49 5 0.04
50 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
Found at i:32289914 original size:30 final size:30
Alignment explanation
Indices: 32289880--32289939 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
32289870 ATTTAATACG
32289880 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
32289910 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
32289940 GGCTCGGAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:32300451 original size:78 final size:77
Alignment explanation
Indices: 32300312--32300534 Score: 202
Period size: 78 Copynumber: 2.8 Consensus size: 77
32300302 TTGAATGCTG
* * * * * * * *
32300312 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAGCCCCGAAGGCATTGTGC-GAGT-ACTAAAACCGGGCTAAG-TCCCGAAGGCATT
32300376 TGTGCGAG-A-TACAA
63 TGTGCGAGCATTA-AA
* * *
32300390 GTTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAG-ACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 --TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATT
*
32300454 CGTGCGAGTCATTAAA
63 TGTGCGAG-CATTAAA
* * *
32300470 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGCCCCGAAGGCATTGTGCGAG-TACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
32300535 AACGAGGAGC
Statistics
Matches: 121, Mismatches: 15, Indels: 15
0.80 0.10 0.10
Matches are distributed among these distances:
77 10 0.08
78 50 0.41
79 28 0.23
80 23 0.19
81 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (77 bp):
TCCGGGTTAAGCCCCGAAGGCATTGTGCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGCATTAAA
Found at i:32300525 original size:39 final size:40
Alignment explanation
Indices: 32300312--32300532 Score: 186
Period size: 40 Copynumber: 5.6 Consensus size: 40
32300302 TTGAATGCTG
* * * * * *
32300312 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTCACTAAA
** * *
32300352 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGAT-AC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAG-TCACTAA-A
* * *
32300392 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAG--ACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTAAA
*
32300430 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTAAA
* *
32300470 TCCGGGTTAAGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTAAA
* * *
32300509 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
32300533 TGAACGAGGA
Statistics
Matches: 153, Mismatches: 20, Indels: 17
0.81 0.11 0.09
Matches are distributed among these distances:
38 31 0.20
39 36 0.24
40 77 0.50
41 9 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTAAA
Found at i:32300552 original size:79 final size:78
Alignment explanation
Indices: 32300392--32300567 Score: 187
Period size: 79 Copynumber: 2.3 Consensus size: 78
32300382 AGATACAAGT
* * * * *
32300392 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGACTAAATCCGGGTTAAGTCCCGAAGGCATTCGT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGACTAAAACCGGGCTAAGTCCCGAAGGCATTCGA
* *
32300457 GCGAGTCATTAAA
66 ACGAGTCACTAAA
* * *
32300470 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAG--ACTAAAACCGGGCTAAGTCCCGAAGGCATTC
* *
32300534 GAACGAG-GAGCTATA
64 GAACGAGTCA-CTAAA
*
32300549 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
32300568 TACGTGATTT
Statistics
Matches: 82, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
77 9 0.11
78 35 0.43
79 38 0.46
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGACTAAAACCGGGCTAAGTCCCGAAGGCATTCGA
ACGAGTCACTAAA
Found at i:32320488 original size:43 final size:42
Alignment explanation
Indices: 32320441--32320574 Score: 162
Period size: 43 Copynumber: 3.2 Consensus size: 42
32320431 TTTTCTCATC
* * *
32320441 TAAGACCACGTCAGGGACATTGGCATCGATATGTGATTATGTG
1 TAAGACCATGTCTGGGACATTGGCATCGATATGTGATT-CGTG
*
32320484 TAAGACCATGTCTGGGACATTGGCATC-ATATTTGATTCGTG
1 TAAGACCATGTCTGGGACATTGGCATCGATATGTGATTCGTG
* * * * *
32320525 GAAGACCTTGTTTGGGACAGTGGCATCGATATGTGATTGCATG
1 TAAGACCATGTCTGGGACATTGGCATCGATATGTGATT-CGTG
32320568 TAAGACC
1 TAAGACC
32320575 TGTAACGCCC
Statistics
Matches: 78, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
41 26 0.33
42 18 0.23
43 34 0.44
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (42 bp):
TAAGACCATGTCTGGGACATTGGCATCGATATGTGATTCGTG
Found at i:32320542 original size:41 final size:43
Alignment explanation
Indices: 32320442--32320562 Score: 156
Period size: 41 Copynumber: 2.9 Consensus size: 43
32320432 TTTCTCATCT
* * * *
32320442 AAGACCACGTCAGGGACATTGGCATCGATATGTGATTATGTGT
1 AAGACCATGTCTGGGACATTGGCATCGATATGTGATTACGTGG
*
32320485 AAGACCATGTCTGGGACATTGGCATC-ATATTTGATT-CGTGG
1 AAGACCATGTCTGGGACATTGGCATCGATATGTGATTACGTGG
* * *
32320526 AAGACCTTGTTTGGGACAGTGGCATCGATATGTGATT
1 AAGACCATGTCTGGGACATTGGCATCGATATGTGATT
32320563 GCATGTAAGA
Statistics
Matches: 68, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
41 26 0.38
42 18 0.26
43 24 0.35
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.31
Consensus pattern (43 bp):
AAGACCATGTCTGGGACATTGGCATCGATATGTGATTACGTGG
Found at i:32321937 original size:93 final size:93
Alignment explanation
Indices: 32321825--32321995 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
32321815 GCCCCTAAGT
32321825 GAACTCGGACTCAACTCAACGAGACCAGG-CATTCGCATCCATAAGTGAACTCGGAATCAACTCA
1 GAACTCGGACTCAACTCAACGAGACC-GGACATTCGCATCCATAAGTGAACTCGGAATCAACTCA
32321889 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
** *
32321918 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGACCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCAA
32321983 CGAGTTCGGATGC
66 CGAGTTCGGATGC
32321996 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGACCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:32321992 original size:46 final size:46
Alignment explanation
Indices: 32321820--32321992 Score: 203
Period size: 46 Copynumber: 3.7 Consensus size: 46
32321810 AACCCGCCCC
**
32321820 TAAGTGAACTCGGACTCAACTCAACGAGACCAGG-CATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCA
* *
32321866 TAAGTGAACTCGGAATCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
32321914 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
32321959 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32321993 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 10, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 57 0.53
47 28 0.26
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:32328380 original size:45 final size:46
Alignment explanation
Indices: 32328294--32328418 Score: 198
Period size: 45 Copynumber: 2.7 Consensus size: 46
32328284 AACCCACCCC
* ** * *
32328294 TAAGTGAACTTGGACTCAACTCAACGAGCCCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
32328340 TAAGTGAACTCGGACTCAACT-AACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
32328385 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32328419 TGCTCAACCA
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
45 41 0.56
46 32 0.44
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:32328885 original size:30 final size:31
Alignment explanation
Indices: 32328842--32328899 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
32328832 TTAATTCAAA
32328842 TTTTAGCAAAATTACAATTTTACCCCTAAAC
1 TTTTAGCAAAATTACAATTTTACCCCTAAAC
* * *
32328873 TTTT-GCATAATTACACTTTTGCCCCTA
1 TTTTAGCAAAATTACAATTTTACCCCTA
32328900 GGCTCGGGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 20 0.83
31 4 0.17
ACGTcount: A:0.31, C:0.24, G:0.05, T:0.40
Consensus pattern (31 bp):
TTTTAGCAAAATTACAATTTTACCCCTAAAC
Found at i:32334844 original size:28 final size:28
Alignment explanation
Indices: 32334799--32334864 Score: 78
Period size: 28 Copynumber: 2.4 Consensus size: 28
32334789 ACTGCACTGT
* * * *
32334799 ACTGATACTGTCTTGGGCTTAAGCCCAC
1 ACTGTTACTGTATAGGGCTCAAGCCCAC
* *
32334827 ACTGTTACTGTATAGGGCTCAGGCCCAG
1 ACTGTTACTGTATAGGGCTCAAGCCCAC
32334855 ACTGTTACTG
1 ACTGTTACTG
32334865 CATGCACTGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.21, C:0.26, G:0.24, T:0.29
Consensus pattern (28 bp):
ACTGTTACTGTATAGGGCTCAAGCCCAC
Found at i:32338587 original size:49 final size:50
Alignment explanation
Indices: 32338523--32338754 Score: 254
Period size: 49 Copynumber: 4.7 Consensus size: 50
32338513 CTGGTACGCA
*
32338523 TAGTAGCCTGCACTTAGTACTACACATGCGATC-AATTATCCGGTACAAG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCGAATTATCCGGTACAAG
* * * ** * * *
32338572 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCGAATTATCCGGTACAAG
* * * * * * *
32338622 TAGTAGCCTACACTTAGTACTACATACGTGATCGAAGTTATCGGGTACGCA-
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCGAA-TTATCCGGTAC-AAG
*
32338673 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCGAATTATCCGGTACAAG
* *
32338722 TAGTAGCCTGCACTTAGAACTACACATGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC
32338755 TTACAATAGA
Statistics
Matches: 151, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
49 71 0.47
50 45 0.30
51 35 0.23
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCGAATTATCCGGTACAAG
Found at i:32338690 original size:101 final size:98
Alignment explanation
Indices: 32338523--32338747 Score: 290
Period size: 101 Copynumber: 2.3 Consensus size: 98
32338513 CTGGTACGCA
*
32338523 TAGTAGCCTGCACTTAGTACTACACATGCGATCAATTATCCGGTACAAGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGATCAATTATCCGGTACAAGTAGTAGCCTGCACTTA
* *
32338588 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACC-AACCATCCGATACACG
* * * * *
32338622 TAGTAGCCTACACTTAGTACTACATACGTGATCGAAGTTATCGGGTACGCA-TAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGATC-AA-TTATCCGGTAC-AAGTAGTAGCCTGCAC
* ** *
32338686 TTAGTACTACACATGCGACCAATTATCCGGTACACG
63 TTAGTACTACACACGCGACCAACCATCCGATACACG
*
32338722 TAGTAGCCTGCACTTAGAACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
32338748 TGTGACCTTA
Statistics
Matches: 108, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
99 29 0.27
100 37 0.34
101 41 0.38
102 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGATCAATTATCCGGTACAAGTAGTAGCCTGCACTTA
GTACTACACACGCGACCAACCATCCGATACACG
Found at i:32348752 original size:28 final size:28
Alignment explanation
Indices: 32348708--32348786 Score: 122
Period size: 28 Copynumber: 2.8 Consensus size: 28
32348698 TGGCCCCTTT
* *
32348708 AGGCCCAATCTCATTCATATGGCCCATC
1 AGGCCCAATCACTTTCATATGGCCCATC
*
32348736 GGGCCCAATCACTTTCATATGGCCCATC
1 AGGCCCAATCACTTTCATATGGCCCATC
*
32348764 AGGCCCAATCATTTTCATATGGC
1 AGGCCCAATCACTTTCATATGGC
32348787 TCGTCAAGCC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (28 bp):
AGGCCCAATCACTTTCATATGGCCCATC
Found at i:32348801 original size:28 final size:28
Alignment explanation
Indices: 32348710--32348803 Score: 107
Period size: 28 Copynumber: 3.4 Consensus size: 28
32348700 GCCCCTTTAG
* * **
32348710 GCCCAATCTCATTCATATGGCCCATCGG
1 GCCCAATCACTTTCATATGGCCCATCAA
*
32348738 GCCCAATCACTTTCATATGGCCCATCAG
1 GCCCAATCACTTTCATATGGCCCATCAA
* * *
32348766 GCCCAATCATTTTCATATGGCTCGTCAA
1 GCCCAATCACTTTCATATGGCCCATCAA
*
32348794 GCCTAATCAC
1 GCCCAATCAC
32348804 ACTCATAGTC
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 57 1.00
ACGTcount: A:0.24, C:0.34, G:0.15, T:0.27
Consensus pattern (28 bp):
GCCCAATCACTTTCATATGGCCCATCAA
Found at i:32351162 original size:27 final size:27
Alignment explanation
Indices: 32351130--32351191 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
32351120 CAAAACAGTC
* *
32351130 ATTTTACCCTATAGGGGTATTTCGATA
1 ATTTTACACTACAGGGGTATTTCGATA
*
32351157 ATTTTACACTACAGGGGTATTTTGATA
1 ATTTTACACTACAGGGGTATTTCGATA
32351184 ATTTTACA
1 ATTTTACA
32351192 AACTGGGGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.42
Consensus pattern (27 bp):
ATTTTACACTACAGGGGTATTTCGATA
Found at i:32351200 original size:27 final size:27
Alignment explanation
Indices: 32351141--32351324 Score: 112
Period size: 27 Copynumber: 6.9 Consensus size: 27
32351131 TTTTACCCTA
* *
32351141 TAGGGGTATTTCGATAATTTTACACTAC
1 TAGGGGTATTTTGATAATTTTACA-AAC
32351169 -AGGGGTATTTTGATAATTTTACAAAC
1 TAGGGGTATTTTGATAATTTTACAAAC
* * * *
32351195 TGGGGGTA-TTTCAGTCATTTTAC-AAT
1 TAGGGGTATTTTGA-TAATTTTACAAAC
* *
32351221 TCA-AGGTATTTT-AGTAATTTCACAAA-
1 T-AGGGGTATTTTGA-TAATTTTACAAAC
* * *
32351247 TCGAGGGTATTTCGATAATTTCACAAA-
1 TAG-GGGTATTTTGATAATTTTACAAAC
* * *
32351274 TCAGGGGTATTTTGGTAATTTTATAACC
1 T-AGGGGTATTTTGATAATTTTACAAAC
* **
32351302 TAGGGGTACTTCAATAATTTTAC
1 TAGGGGTATTTTGATAATTTTAC
32351325 CACTCGGGGA
Statistics
Matches: 122, Mismatches: 24, Indels: 21
0.73 0.14 0.13
Matches are distributed among these distances:
26 23 0.19
27 96 0.79
28 3 0.02
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.39
Consensus pattern (27 bp):
TAGGGGTATTTTGATAATTTTACAAAC
Found at i:32351201 original size:54 final size:53
Alignment explanation
Indices: 32351143--32351324 Score: 165
Period size: 54 Copynumber: 3.4 Consensus size: 53
32351133 TTACCCTATA
32351143 GGGGTATTTCGATAATTTTACACTACAGGGGTATTTTGATAATTTTACAAACTG
1 GGGGTATTTCGATAATTTTACA-TACAGGGGTATTTTGATAATTTTACAAACTG
* * * *
32351197 GGGGTATTTC-AGTCATTTTACAATTCA-AGGTATTTT-AGTAATTTCACAAA-TCG
1 GGGGTATTTCGA-TAATTTTAC-ATACAGGGGTATTTTGA-TAATTTTACAAACT-G
* * * * * * *
32351250 AGGGTATTTCGATAATTTCACAAATCAGGGGTATTTTGGTAATTTTATAACCTA
1 GGGGTATTTCGATAATTTTACATA-CAGGGGTATTTTGATAATTTTACAAACTG
* *
32351304 GGGGTACTTCAATAATTTTAC
1 GGGGTATTTCGATAATTTTAC
32351325 CACTCGGGGA
Statistics
Matches: 100, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
52 3 0.03
53 39 0.39
54 56 0.56
55 2 0.02
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (53 bp):
GGGGTATTTCGATAATTTTACATACAGGGGTATTTTGATAATTTTACAAACTG
Found at i:32351246 original size:53 final size:53
Alignment explanation
Indices: 32351144--32351294 Score: 139
Period size: 53 Copynumber: 2.8 Consensus size: 53
32351134 TACCCTATAG
* * * * *
32351144 GGGTATTTCGATAATTTTAC-ACTACAGGGGTATTTTGATAATTTTACAAA-CTGG
1 GGGTATTTCGATAATTTCACAAAT-CAGAGGTATTTTG-TAATTTCACAAATC-GA
* * *
32351198 GGGTATTTC-AGTCATTTTACAATTCA-AGGTATTTTAGTAATTTCACAAATCGA
1 GGGTATTTCGA-TAATTTCACAAATCAGAGGTATTTT-GTAATTTCACAAATCGA
*
32351251 GGGTATTTCGATAATTTCACAAATCAGGGGTATTTTGGTAATTT
1 GGGTATTTCGATAATTTCACAAATCAGAGGTATTTT-GTAATTT
32351295 TATAACCTAG
Statistics
Matches: 81, Mismatches: 10, Indels: 12
0.79 0.10 0.12
Matches are distributed among these distances:
53 42 0.52
54 37 0.46
55 2 0.02
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (53 bp):
GGGTATTTCGATAATTTCACAAATCAGAGGTATTTTGTAATTTCACAAATCGA
Found at i:32354427 original size:46 final size:46
Alignment explanation
Indices: 32354377--32354552 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
32354367 TGGTTGAGCA
32354377 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
32354423 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
32354468 CATCTGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
32354516 CCCGAGCTCGTTAAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32354553 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 16, Indels: 18
0.76 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:32354533 original size:93 final size:93
Alignment explanation
Indices: 32354374--32354544 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
32354364 GGATGGTTGA
* * *
32354374 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTAAGT
*
32354439 TGAGTCTGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
32354467 GCATCTGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTAAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTAAGT
32354532 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
32354545 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTAAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:32361869 original size:46 final size:46
Alignment explanation
Indices: 32361819--32361991 Score: 156
Period size: 46 Copynumber: 3.7 Consensus size: 46
32361809 TTGAGCATCC
*
32361819 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCT
* * * * * *
32361865 GAACTCATTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCAT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GCCT
* * *
32361910 ACGAAATCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
1 --GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCT
* * *
32361958 GAGCTCGTTGAGTTGATTACGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32361992 GTCGGTTACA
Statistics
Matches: 98, Mismatches: 20, Indels: 18
0.72 0.15 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 4 0.04
46 55 0.56
47 24 0.24
48 4 0.04
50 3 0.03
51 2 0.02
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCT
Found at i:32361982 original size:93 final size:93
Alignment explanation
Indices: 32361813--32361983 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
32361803 GGATGGTTGA
* * * * *
32361813 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCATTGAGT
1 GCATACGAAATCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
*
32361878 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTACGAGTTCGTGAAATGTAACTAG
* *
32361906 GCATACGAAATCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATACGAAATCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
*
32361971 TGATTACGAGTTC
66 TGAGTACGAGTTC
32361984 ACTTATGGGT
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATACGAAATCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTACGAGTTCGTGAAATGTAACTAG
Found at i:32369638 original size:47 final size:47
Alignment explanation
Indices: 32369520--32369640 Score: 206
Period size: 47 Copynumber: 2.6 Consensus size: 47
32369510 CATCCATAAG
*
32369520 TGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
* * *
32369567 CGAACTCAGACTCAACTCAACGAGTTTGGATGCCTAGTTACATCTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
32369614 TGAACTCGGACTCAACTCAACGAGTTC
1 TGAACTCGGACTCAACTCAACGAGTTC
32369641 AGACGTTCGC
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (47 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:32372469 original size:15 final size:15
Alignment explanation
Indices: 32372421--32372487 Score: 50
Period size: 15 Copynumber: 4.5 Consensus size: 15
32372411 TAAAGATAAC
*
32372421 AAGAAAACT-GAATA
1 AAGAAACCTAGAATA
* *
32372435 AAGAAATCCAAG-ATT
1 AAGAAA-CCTAGAATA
*
32372450 GAGAAACCTAGAATA
1 AAGAAACCTAGAATA
32372465 AAGAAATCC-AGAATA
1 AAGAAA-CCTAGAATA
*
32372480 AAGGAACC
1 AAGAAACC
32372488 CAAGATACAA
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
14 12 0.29
15 26 0.63
16 3 0.07
ACGTcount: A:0.57, C:0.13, G:0.16, T:0.13
Consensus pattern (15 bp):
AAGAAACCTAGAATA
Found at i:32375574 original size:47 final size:47
Alignment explanation
Indices: 32375510--32375679 Score: 188
Period size: 47 Copynumber: 3.6 Consensus size: 47
32375500 CGTCCATAAG
* *
32375510 TGAACTTGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
* * *
32375557 CGAACTCGGACTCAACTCAACGAGTTCGGA---CT--TTCGCATCCATAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA
** *
32375602 GTGAACTCAAACTCAACTCAACGAGTTTGGATGCCTAGTTACATCTCA
1 -TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
*
32375650 TGAACTCGGACTCAACTCAACAAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
32375680 CGTTCGCATC
Statistics
Matches: 99, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 2 0.02
46 26 0.26
47 53 0.54
48 2 0.02
49 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (47 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:32375625 original size:46 final size:46
Alignment explanation
Indices: 32375457--32375722 Score: 174
Period size: 46 Copynumber: 5.7 Consensus size: 46
32375447 TGTAACTCGC
* * * * *
32375457 CCATAAGCGAACTTGGAATCAACTCAACGAGCTCAGG--TGTTCGCGT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACT-TTCGCAT
* * *
32375503 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---CT--TTCGCAT
* *
32375553 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACTTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACTTTCGCAT
** * *
32375596 CCATAAGTGAACTCAAACTCAACTCAACGAGTTTGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---CT--TTCGCAT
* * *
32375646 -C-TCA-TGAACTCGGACTCAACTCAACAAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACTTTCGCAT
* * *
32375689 CCATAAGTGAGCTCGGACTCAACTTAAGGAGTTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
32375723 AGATGCCCAA
Statistics
Matches: 174, Mismatches: 27, Indels: 38
0.73 0.11 0.16
Matches are distributed among these distances:
42 4 0.02
43 6 0.03
44 5 0.03
45 6 0.03
46 81 0.47
47 53 0.30
48 4 0.02
49 4 0.02
50 6 0.03
51 5 0.03
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACTTTCGCAT
Found at i:32375721 original size:93 final size:93
Alignment explanation
Indices: 32375464--32375729 Score: 354
Period size: 93 Copynumber: 2.9 Consensus size: 93
32375454 CGCCCATAAG
* * * * * * *
32375464 CGAACTTGGAATCAACTCAACGAGCTCAGG-TGTTCGCGTCCATAAGTGAACTTGGACTCAACTC
1 CGAACTCGGACTCAACTCAACAAGTTC-GGACGTTCGCATCCATAAGTGAACTCGGACTCAACTC
*
32375528 AACGAGCTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
* * **
32375557 CGAACTCGGACTCAACTCAACGAGTTCGGACTTTCGCATCCATAAGTGAACTCAAACTCAACTCA
1 CGAACTCGGACTCAACTCAACAAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
32375622 ACGAGTTTGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
32375650 TGAACTCGGACTCAACTCAACAAGTTCGGACGTTCGCATCCATAAGTGAGCTCGGACTCAACTTA
1 CGAACTCGGACTCAACTCAACAAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
32375715 AGGAGTTCAGATGCC
66 ACGAGTTCGGATGCC
32375730 CAAATATCTG
Statistics
Matches: 151, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
92 2 0.01
93 149 0.99
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACAAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:32377881 original size:13 final size:13
Alignment explanation
Indices: 32377863--32377887 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32377853 TCAAAAGTGT
32377863 AAAAATCATCAAG
1 AAAAATCATCAAG
32377876 AAAAATCATCAA
1 AAAAATCATCAA
32377888 AATCACTTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAATCATCAAG
Found at i:32391896 original size:27 final size:27
Alignment explanation
Indices: 32391859--32391910 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
32391849 ACAACTTGAT
* *
32391859 AAAATGACTATTTTTCCCTTATGTGGA
1 AAAATGACTATTTTGCCCCTATGTGGA
32391886 AAAATGACTATTTTGCCCCTATGTG
1 AAAATGACTATTTTGCCCCTATGTG
32391911 ATATATGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.38
Consensus pattern (27 bp):
AAAATGACTATTTTGCCCCTATGTGGA
Found at i:32397228 original size:51 final size:51
Alignment explanation
Indices: 32397153--32397269 Score: 225
Period size: 51 Copynumber: 2.3 Consensus size: 51
32397143 TGATGAAAAA
32397153 AAAAAGAAAGAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAG
1 AAAAAGAAAGAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAG
32397204 AAAAAGAAAGAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAG
1 AAAAAGAAAGAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAG
*
32397255 AAAAAGAAGGAAAAA
1 AAAAAGAAAGAAAAA
32397270 GTGCTTTGAG
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 65 1.00
ACGTcount: A:0.51, C:0.10, G:0.21, T:0.17
Consensus pattern (51 bp):
AAAAAGAAAGAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAG
Found at i:32398514 original size:40 final size:40
Alignment explanation
Indices: 32398409--32398655 Score: 340
Period size: 40 Copynumber: 6.2 Consensus size: 40
32398399 GGATTGATAA
* * * *
32398409 CCGGGCTAAGTTCCAAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
32398449 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
32398488 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
32398528 CCGAGCTAAGTCCCGGAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
32398568 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
32398608 CCGGGCTAAATCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
32398648 CC-GGCTAA
1 CCGGGCTAA
32398656 ACTCCGAAGG
Statistics
Matches: 189, Mismatches: 15, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 41 0.22
40 148 0.78
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:32405310 original size:51 final size:51
Alignment explanation
Indices: 32405235--32405356 Score: 226
Period size: 51 Copynumber: 2.4 Consensus size: 51
32405225 TGATGAAAAA
32405235 AAAAAGAAAGAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAG
1 AAAAAGAAAGAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAG
32405286 AAAAAGAAAGAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAG
1 AAAAAGAAAGAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAG
* *
32405337 AAAAAGAAGGAAAAAGAGCT
1 AAAAAGAAAGAAAAAAAGCT
32405357 TTGAGGAAAT
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
51 69 1.00
ACGTcount: A:0.50, C:0.11, G:0.22, T:0.17
Consensus pattern (51 bp):
AAAAAGAAAGAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAG
Found at i:32406563 original size:40 final size:40
Alignment explanation
Indices: 32406481--32406581 Score: 127
Period size: 40 Copynumber: 2.5 Consensus size: 40
32406471 ATTCGGATTG
* *
32406481 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAATCCCGAAGGCATTTGAGCGAGTTACT
*
32406521 ATAACCGGGCTAAATCCCGAAGGCATTTGAGCTAG-TAGCT
1 ATAACCGGGCTAAATCCCGAAGGCATTTGAGCGAGTTA-CT
*
32406561 ATATCCGGG-TAAA-CTCCGAAG
1 ATAACCGGGCTAAATC-CCGAAG
32406582 TTACTTGGTT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 12 0.22
40 42 0.76
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAATCCCGAAGGCATTTGAGCGAGTTACT
Found at i:32412105 original size:18 final size:17
Alignment explanation
Indices: 32412075--32412108 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
32412065 GACACCCTCT
*
32412075 GGAATCGATTTTGGGGA
1 GGAATCGACTTTGGGGA
32412092 GGAATTCGACTTTGGGG
1 GGAA-TCGACTTTGGGG
32412109 GGTGAGTGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.21, C:0.09, G:0.41, T:0.29
Consensus pattern (17 bp):
GGAATCGACTTTGGGGA
Found at i:32416457 original size:40 final size:39
Alignment explanation
Indices: 32416422--32416511 Score: 128
Period size: 39 Copynumber: 2.3 Consensus size: 39
32416412 TACTCGTTCA
* *
32416422 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCCCC
1 AATGCCTTCGGG-CATAGCCCGGAAT-TAGTAACTCGCACC
*
32416462 AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACC
1 AATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCACC
32416501 AATGCCTTCGG
1 AATGCCTTCGG
32416512 ATCTTAGTCC
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
39 33 0.72
40 13 0.28
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.23
Consensus pattern (39 bp):
AATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCACC
Found at i:32416491 original size:39 final size:40
Alignment explanation
Indices: 32416422--32416564 Score: 141
Period size: 40 Copynumber: 3.6 Consensus size: 40
32416412 TACTCGTTCA
* *
32416422 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCCCC
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACC
*
32416462 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACC
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACC
* * * * *
32416501 AATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-C
1 AATGCCTTCGGGA-CATAGCCCGGATATAGTAAC-TCGCACC
* *
32416541 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACATAGCCCGGA
32416565 CATCATTCGA
Statistics
Matches: 88, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
38 3 0.03
39 31 0.35
40 46 0.52
41 8 0.09
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACC
Found at i:32428395 original size:51 final size:51
Alignment explanation
Indices: 32428318--32428464 Score: 235
Period size: 51 Copynumber: 2.9 Consensus size: 51
32428308 CGGATATAGG
* *
32428318 GTGGCCTTCACATAGTTCCACCCTTGTAG-CCAAAGCTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGT-GTCCAAAGCTATTTTATTCACAAA
* *
32428369 GTGGCCTTCACCTAGTACCACACTTGTGTCCAAAGCTATTTTATTCGCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
32428420 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTA-TTTATTC
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
32428465 CTAAGGTTCA
Statistics
Matches: 90, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
50 8 0.09
51 82 0.91
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.32
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
Found at i:32428536 original size:24 final size:24
Alignment explanation
Indices: 32428507--32428570 Score: 110
Period size: 24 Copynumber: 2.7 Consensus size: 24
32428497 ACAATGCCTT
*
32428507 GACTTATTTCACTTTGATGCCATG
1 GACTTATTTCACTTAGATGCCATG
32428531 GACTTATTTCACTTAGATGCCATG
1 GACTTATTTCACTTAGATGCCATG
*
32428555 GTCTTATTTCACTTAG
1 GACTTATTTCACTTAG
32428571 CACAATTTCA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.22, C:0.20, G:0.16, T:0.42
Consensus pattern (24 bp):
GACTTATTTCACTTAGATGCCATG
Found at i:32448429 original size:39 final size:40
Alignment explanation
Indices: 32448276--32448491 Score: 282
Period size: 40 Copynumber: 5.5 Consensus size: 40
32448266 ATGTCCGAGC
* * * * **
32448276 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGT
32448316 TAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
*
32448356 TAAGT-CC-AAGGCATTGGTGCGAGTTACTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
32448394 TAAGTCCCGAAGGCATTTGT-CGAGTTACTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
*
32448433 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGT
*
32448473 TATGTCCCGAAGGCATTTG
1 TAAGTCCCGAAGGCATTTG
32448492 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 10, Indels: 12
0.88 0.05 0.07
Matches are distributed among these distances:
38 35 0.22
39 44 0.28
40 71 0.44
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
Found at i:32448471 original size:79 final size:80
Alignment explanation
Indices: 32448276--32448491 Score: 291
Period size: 79 Copynumber: 2.7 Consensus size: 80
32448266 ATGTCCGAGC
* * * * *
32448276 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCATTTGTGCG
32448339 AGTTACTAAATCCGGGT
64 AGTTACTAAATCCGGGT
* *
32448356 TAAGT-CC-AAGGCATTGGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATTTGT-CGA
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATTTGTGCGA
32448417 GTTACTAAATCCGGGT
65 GTTACTAAATCCGGGT
*
32448433 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
32448492 AACGAGGAGC
Statistics
Matches: 120, Mismatches: 10, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
77 26 0.22
78 35 0.29
79 52 0.43
80 7 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
TTACTAAATCCGGGT
Found at i:32448522 original size:79 final size:79
Alignment explanation
Indices: 32448308--32448524 Score: 239
Period size: 79 Copynumber: 2.8 Consensus size: 79
32448298 AAGTGACCAT
* * * *
32448308 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGT-CC-AAGGCAT
1 ATCCGGGCTAAG-TCCCGAAGGCATTTG-ACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCAT
32448370 TGGTGCGAGTTACTAA
64 TGGTGCGAGTTACTAA
* * * * *
32448386 ATCCGGGTTAAGTCCCGAAGGCATTTGTCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTG
32448451 GTGCGAGTTACTATA
66 GTGCGAGTTACTA-A
* * *
32448466 A-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGGCATTTG-ACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
32448525 TACGTGATTT
Statistics
Matches: 122, Mismatches: 11, Indels: 11
0.85 0.08 0.08
Matches are distributed among these distances:
77 25 0.20
78 25 0.20
79 59 0.48
80 13 0.11
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTG
GTGCGAGTTACTAA
Found at i:32456296 original size:40 final size:40
Alignment explanation
Indices: 32456146--32456367 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
32456136 TTGAATGATG
* * * *
32456146 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
32456186 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
32456225 TCCGGG-TAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32456262 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32456302 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
32456343 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32456368 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 10, Indels: 16
0.86 0.05 0.08
Matches are distributed among these distances:
36 13 0.08
37 17 0.10
38 8 0.05
39 16 0.10
40 100 0.61
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32462319 original size:22 final size:22
Alignment explanation
Indices: 32462261--32462322 Score: 79
Period size: 22 Copynumber: 2.8 Consensus size: 22
32462251 AATCTTTCAA
* *
32462261 GGTGGTGTAAGGGTAGTGGTAT
1 GGTGGTGCAAGGGTGGTGGTAT
*
32462283 GGTGGTGCTAGGGTGGTGGTAT
1 GGTGGTGCAAGGGTGGTGGTAT
* *
32462305 GGTGGTTCAATGGTGGTG
1 GGTGGTGCAAGGGTGGTG
32462323 AGTTAATAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.13, C:0.03, G:0.52, T:0.32
Consensus pattern (22 bp):
GGTGGTGCAAGGGTGGTGGTAT
Found at i:32465313 original size:47 final size:47
Alignment explanation
Indices: 32465259--32465452 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
32465249 TTAGGATTTT
** * *
32465259 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
32465306 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
32465353 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAAAGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
32465400 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
32465447 ATGTGA
1 ATGTGA
32465453 AATATGTATG
Statistics
Matches: 129, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 129 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:32465582 original size:50 final size:48
Alignment explanation
Indices: 32465422--32465592 Score: 290
Period size: 48 Copynumber: 3.5 Consensus size: 48
32465412 TGAACATGCA
32465422 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
32465470 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
32465518 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
32465568 TATATGTGGTAAAGCCGAATGGCTA
1 TATATGTGGTAAAGCCGAATGGCTA
32465593 GTGATTGTGG
Statistics
Matches: 116, Mismatches: 3, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
47 1 0.01
48 75 0.65
49 2 0.02
50 37 0.32
51 1 0.01
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:32465836 original size:37 final size:37
Alignment explanation
Indices: 32465730--32465836 Score: 187
Period size: 37 Copynumber: 2.9 Consensus size: 37
32465720 AAATATATTT
*
32465730 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
32465767 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
* *
32465804 CGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTT
32465837 CGTCTGAGCT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
Found at i:32467273 original size:31 final size:31
Alignment explanation
Indices: 32467204--32467351 Score: 181
Period size: 31 Copynumber: 4.8 Consensus size: 31
32467194 TCAATCTCAG
*
32467204 CATAT-ACTGGGCCGAAGCCTTTACATTATT
1 CATATCACTGGGCCAAAGCCTTTACATTATT
* * * * *
32467234 CATGTCACTGAGCCAAAGCTTTTTCATTGTT
1 CATATCACTGGGCCAAAGCCTTTACATTATT
*
32467265 CATATCACTGGGCCGAAGCCTTTACATTATT
1 CATATCACTGGGCCAAAGCCTTTACATTATT
* * * *
32467296 CATGTCACTGGGCCAAAGCTTTTTCATTGTT
1 CATATCACTGGGCCAAAGCCTTTACATTATT
*
32467327 CATATCACTAGGCCAAAGCCTTTAC
1 CATATCACTGGGCCAAAGCCTTTAC
32467352 TGTAAACGAC
Statistics
Matches: 96, Mismatches: 21, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
30 4 0.04
31 92 0.96
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (31 bp):
CATATCACTGGGCCAAAGCCTTTACATTATT
Found at i:32467281 original size:62 final size:62
Alignment explanation
Indices: 32467204--32467351 Score: 262
Period size: 62 Copynumber: 2.4 Consensus size: 62
32467194 TCAATCTCAG
32467204 CATAT-ACTGGGCCGAAGCCTTTACATTATTCATGTCACTGAGCCAAAGCTTTTTCATTGTT
1 CATATCACTGGGCCGAAGCCTTTACATTATTCATGTCACTGAGCCAAAGCTTTTTCATTGTT
*
32467265 CATATCACTGGGCCGAAGCCTTTACATTATTCATGTCACTGGGCCAAAGCTTTTTCATTGTT
1 CATATCACTGGGCCGAAGCCTTTACATTATTCATGTCACTGAGCCAAAGCTTTTTCATTGTT
* *
32467327 CATATCACTAGGCCAAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
32467352 TGTAAACGAC
Statistics
Matches: 83, Mismatches: 3, Indels: 1
0.95 0.03 0.01
Matches are distributed among these distances:
61 5 0.06
62 78 0.94
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (62 bp):
CATATCACTGGGCCGAAGCCTTTACATTATTCATGTCACTGAGCCAAAGCTTTTTCATTGTT
Found at i:32467597 original size:25 final size:25
Alignment explanation
Indices: 32467569--32467638 Score: 131
Period size: 25 Copynumber: 2.8 Consensus size: 25
32467559 CTCTTTTAAT
32467569 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGATA
32467594 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGATA
*
32467619 AACTGGCGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
32467639 GCACTTTCTC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGATA
Found at i:32467778 original size:25 final size:25
Alignment explanation
Indices: 32467750--32467799 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
32467740 CATAATTAAA
* * *
32467750 ACCTAGGGGTAAAATGGTCATTTTT
1 ACCTAGGAGCAAAATAGTCATTTTT
*
32467775 ACCTAGGAGCGAAATAGTCATTTTT
1 ACCTAGGAGCAAAATAGTCATTTTT
32467800 CGTATTATAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (25 bp):
ACCTAGGAGCAAAATAGTCATTTTT
Found at i:32470011 original size:3 final size:3
Alignment explanation
Indices: 32470003--32470027 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
32469993 ATTTAATTAC
32470003 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
32470028 TTCATAAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:32472144 original size:31 final size:31
Alignment explanation
Indices: 32472094--32472177 Score: 98
Period size: 31 Copynumber: 2.7 Consensus size: 31
32472084 TCAATCTCAG
*
32472094 CATAT-ACTGGGCCGAAGCCTTTCCATTATT
1 CATATCACTAGGCCGAAGCCTTTCCATTATT
* * * * *
32472124 CATGTCACTTGGCCAAAGCCTTTTCATTGTT
1 CATATCACTAGGCCGAAGCCTTTCCATTATT
*
32472155 CATATCACTAGGCCGGAGCCTTT
1 CATATCACTAGGCCGAAGCCTTT
32472178 ACTGTAAATG
Statistics
Matches: 44, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
30 4 0.09
31 40 0.91
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.33
Consensus pattern (31 bp):
CATATCACTAGGCCGAAGCCTTTCCATTATT
Found at i:32472422 original size:24 final size:25
Alignment explanation
Indices: 32472390--32472441 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
32472380 GCCTAGCCTC
*
32472390 TTTTAAT-AACTGGGGCAAAACCCT
1 TTTTAATAAACTAGGGCAAAACCCT
* *
32472414 TTTTGATAAACTAGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAACCCT
32472439 TTT
1 TTT
32472442 GCACTTCCTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 6 0.25
25 18 0.75
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTAGGGCAAAACCCT
Found at i:32472442 original size:24 final size:23
Alignment explanation
Indices: 32472384--32472442 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 23
32472374 CTGGAGGCCT
* *
32472384 AGCCTCTTTTAATAACTGGGGCAA
1 AGCC-CTTTTGATAACTAGGGCAA
*
32472408 AACCCTTTTTGATAAACTAGGGCAA
1 AGCCC-TTTTGAT-AACTAGGGCAA
32472433 AGCCCTTTTG
1 AGCCCTTTTG
32472443 CACTTCCTCC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
23 1 0.03
24 14 0.48
25 14 0.48
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (23 bp):
AGCCCTTTTGATAACTAGGGCAA
Found at i:32476965 original size:31 final size:31
Alignment explanation
Indices: 32476927--32477007 Score: 110
Period size: 31 Copynumber: 2.6 Consensus size: 31
32476917 CTCAGCATAT
*
32476927 ACTGGGCCGAAGCCTTTACATTATTCATGCC
1 ACTGGGCCGAAGCCTTTACATTATTCATACC
* *
32476958 ACTGGGCCGAAGCCCTTT-CATTGTTCATATC
1 ACTGGGCCGAAG-CCTTTACATTATTCATACC
*
32476989 ACTGGGCTGAAGCCTTTAC
1 ACTGGGCCGAAGCCTTTAC
32477008 TATAAATGAT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
30 5 0.11
31 34 0.77
32 5 0.11
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.30
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTACATTATTCATACC
Found at i:32477245 original size:24 final size:25
Alignment explanation
Indices: 32477218--32477269 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
32477208 GCCTAGCCTC
32477218 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
*
32477242 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
32477267 TTT
1 TTT
32477270 GCACTTCCTC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:32477270 original size:24 final size:23
Alignment explanation
Indices: 32477198--32477270 Score: 83
Period size: 25 Copynumber: 3.0 Consensus size: 23
32477188 GCTTTATCAT
** *
32477198 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACTGG-GGCAAAGCC-CTTTTG
32477223 ATAACTGGGGCAAAGCCCTTTTTG
1 ATAACTGGGGCAAAGCCC-TTTTG
32477247 ATAAACTGGGGCAAAGCCCTTTTG
1 AT-AACTGGGGCAAAGCCCTTTTG
32477271 CACTTCCTCC
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
23 1 0.02
24 18 0.42
25 24 0.56
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (23 bp):
ATAACTGGGGCAAAGCCCTTTTG
Found at i:32482748 original size:39 final size:39
Alignment explanation
Indices: 32482595--32482758 Score: 208
Period size: 40 Copynumber: 4.2 Consensus size: 39
32482585 AAACCAAGTA
* * *
32482595 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATG
*
32482634 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTA-CTCGCACAAATG
32482674 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATG
* *
32482714 CCTTC-GGACTTAGCCC-GAAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATG
32482753 CCTTCG
1 CCTTCG
32482759 TTATCATCCG
Statistics
Matches: 112, Mismatches: 8, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
38 3 0.03
39 46 0.41
40 62 0.55
41 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATG
Found at i:32482755 original size:79 final size:79
Alignment explanation
Indices: 32482595--32482758 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
32482585 AAACCAAGTA
* * *
32482595 CCTTCGGGATTTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAGT
1 CCTTCGGGACTTAACCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAGT
* *
32482660 AGCTCGCACCAATG
66 AGCTAGCACAAATG
*
32482674 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTC-GGACTTAGCCCGAA-ATT
1 CCTTCGGGACTTA-ACCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGAATA-T
32482736 AGTCA-CTAGCACAAATG
63 AGT-AGCTAGCACAAATG
32482753 CCTTCG
1 CCTTCG
32482759 TTATCATCCG
Statistics
Matches: 75, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
78 1 0.01
79 46 0.61
80 28 0.37
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (79 bp):
CCTTCGGGACTTAACCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAGT
AGCTAGCACAAATG
Found at i:32487235 original size:42 final size:43
Alignment explanation
Indices: 32487139--32487256 Score: 143
Period size: 42 Copynumber: 2.8 Consensus size: 43
32487129 AACGGGTACA
* * *
32487139 ATGCCGACGTCCCAGAC-GTGGTCTTACATGTCATTCAGTATCG
1 ATGCCGATGTCCCAGACAG-GGTCTTACACGTAATTCAGTATCG
**
32487182 ATGCCTCTGTCCCAGACAGGGTCTTACACG-AATTCA-TATACG
1 ATGCCGATGTCCCAGACAGGGTCTTACACGTAATTCAGTAT-CG
*
32487224 ATGCCGATGTCCCAGACATGGTCTTACACGTAA
1 ATGCCGATGTCCCAGACAGGGTCTTACACGTAA
32487257 ATCTCAAATC
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
41 3 0.05
42 34 0.53
43 26 0.41
44 1 0.02
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (43 bp):
ATGCCGATGTCCCAGACAGGGTCTTACACGTAATTCAGTATCG
Found at i:32501327 original size:11 final size:11
Alignment explanation
Indices: 32501311--32501336 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
32501301 GATATTTTTT
32501311 CTTTATAGTCA
1 CTTTATAGTCA
32501322 CTTTATAGTCA
1 CTTTATAGTCA
32501333 CTTT
1 CTTT
32501337 TCCGTCAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.23, C:0.19, G:0.08, T:0.50
Consensus pattern (11 bp):
CTTTATAGTCA
Found at i:32503434 original size:27 final size:27
Alignment explanation
Indices: 32503335--32503505 Score: 120
Period size: 27 Copynumber: 6.3 Consensus size: 27
32503325 TTAGTTTACC
*
32503335 AAATTACTGAAATACCGC-C-AGTTGTA
1 AAATTACTGAAATACC-CTCGATTTGTA
* * * *
32503361 AAATTAC-CAAAGTACCCCCCCGCTTTATA
1 AAATTACTGAAA-TA--CCCTCGATTTGTA
* *
32503390 AAATTAC-CAAATATCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
32503416 AAATTACTGAAATACCCTC-AGTTTGTA
1 AAATTACTGAAATACCCTCGA-TTTGTA
* **
32503443 AAATAACTGAAATACCCTCGACATGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * **
32503470 AAATTA-TCAAAGTACCCTCGAATTACA
1 AAATTACTGAAA-TACCCTCGATTTGTA
32503497 AAATTACTG
1 AAATTACTG
32503506 TTTTACCCTA
Statistics
Matches: 115, Mismatches: 20, Indels: 18
0.75 0.13 0.12
Matches are distributed among these distances:
25 3 0.03
26 30 0.26
27 60 0.52
28 7 0.06
29 15 0.13
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:32503512 original size:27 final size:27
Alignment explanation
Indices: 32503482--32503890 Score: 466
Period size: 27 Copynumber: 15.2 Consensus size: 27
32503472 ATTATCAAAG
* *
32503482 TACCCTCGAATTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
32503509 TACCCTAGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
**
32503536 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
32503563 TACCCTTGATTTACAGAATTATTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * * *
32503590 TACCCTCAATTTACAGAATTTCTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
32503617 TACCCTCGATTGACAGAATTA-TAGTTT
1 TACCCTCGATTTACAAAATTACTA-TTT
*
32503644 T-CCCTCGATTTACAAAATCACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
32503670 TACCCTCGATGTACAGAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-ATTT
32503697 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
32503724 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * * *
32503751 TACCCTCTATTAATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
32503778 TACCCTCGATTTAAAAAATTATTATTT
1 TACCCTCGATTTACAAAATTACTATTT
*
32503805 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
32503832 TACCCTTGATTTACAGAATTA-TCATTT
1 TACCCTCGATTTACAAAATTACT-ATTT
* *
32503859 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
32503886 TACCC
1 TACCC
32503891 CTAGGGTGTT
Statistics
Matches: 324, Mismatches: 51, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
26 23 0.07
27 300 0.93
28 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:32505936 original size:27 final size:28
Alignment explanation
Indices: 32505917--32506016 Score: 121
Period size: 27 Copynumber: 3.6 Consensus size: 28
32505907 ATATATTAAG
* *
32505917 TCCGCACACTCAGTGCTATATAATCAAC
1 TCCGCACACTTAGTGCTATATAATCAAA
*
32505945 T-CGCACACTTGGTGCTATATAATCAAA
1 TCCGCACACTTAGTGCTATATAATCAAA
* * *
32505972 CCCGCACACTTAGTGCTATACAATTTAAA
1 TCCGCACACTTAGTGCTATATAA-TCAAA
*
32506001 CCCGCACACTTAGTGC
1 TCCGCACACTTAGTGC
32506017 CAATCTCATG
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
27 23 0.37
28 20 0.32
29 20 0.32
ACGTcount: A:0.31, C:0.30, G:0.13, T:0.26
Consensus pattern (28 bp):
TCCGCACACTTAGTGCTATATAATCAAA
Found at i:32506010 original size:29 final size:28
Alignment explanation
Indices: 32505918--32506016 Score: 128
Period size: 28 Copynumber: 3.5 Consensus size: 28
32505908 TATATTAAGT
* *
32505918 CCGCACACTCAGTGCTATATAA-TCAAC
1 CCGCACACTTAGTGCTATATAATTAAAC
* * *
32505945 TCGCACACTTGGTGCTATATAATCAAAC
1 CCGCACACTTAGTGCTATATAATTAAAC
*
32505973 CCGCACACTTAGTGCTATACAATTTAAAC
1 CCGCACACTTAGTGCTATATAA-TTAAAC
32506002 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
32506017 CAATCTCATG
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 19 0.31
28 22 0.36
29 20 0.33
ACGTcount: A:0.31, C:0.30, G:0.13, T:0.25
Consensus pattern (28 bp):
CCGCACACTTAGTGCTATATAATTAAAC
Found at i:32514110 original size:29 final size:27
Alignment explanation
Indices: 32514092--32514161 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
32514082 ATATTAAGTC
32514092 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
32514119 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
32514147 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
32514162 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:32514155 original size:28 final size:28
Alignment explanation
Indices: 32514092--32514189 Score: 126
Period size: 28 Copynumber: 3.5 Consensus size: 28
32514082 ATATTAAGTC
*
32514092 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
32514119 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
32514147 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
*
32514176 CACACACTTAGTGC
1 CGCACACTTAGTGC
32514190 CAATCTCATG
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 22 0.35
28 23 0.37
29 18 0.29
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:32517960 original size:27 final size:25
Alignment explanation
Indices: 32517930--32517985 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 25
32517920 CTCAGTTTGC
32517930 AAAATTA-CTAAAATACCCTCGACATGT
1 AAAATTATC-AAAATACCCTCGA-AT-T
*
32517957 AAAATTATCAAAGTACCCTCGAATT
1 AAAATTATCAAAATACCCTCGAATT
32517982 AAAA
1 AAAA
32517986 AATTACAGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
25 5 0.19
26 2 0.07
27 19 0.70
28 1 0.04
ACGTcount: A:0.48, C:0.20, G:0.07, T:0.25
Consensus pattern (25 bp):
AAAATTATCAAAATACCCTCGAATT
Found at i:32518474 original size:27 final size:27
Alignment explanation
Indices: 32517970--32518486 Score: 585
Period size: 27 Copynumber: 19.2 Consensus size: 27
32517960 ATTATCAAAG
* * * *
32517970 TACCCTCGAATTAAAAAATTACAGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
32517997 TACCCTCAATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
32518024 TACCCTCGATTTACAGAA-TACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
32518050 TACCCTCAAATTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
32518077 TACCCTCGAATTACA-AAGTTACCGTTT
1 TACCCTCGATTTACAGAA-TTACTGTTT
*
32518104 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
32518131 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
32518158 TACCCTCGATTTACAAAATTTCTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
32518185 TACCCTCAATTTACAGAGTTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
* *
32518212 TACCCTCAATTGACAGAATTA-TAGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
* *
32518239 TACCCTCAATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
32518266 TACCTTCGATTTATAGAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
**
32518293 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
**
32518320 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
32518347 TACCCTCGATTGATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
32518374 TACCCTCGATTTATAAAATTATTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
32518401 TACACTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
32518428 TACCCTCGATATACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * * **
32518455 TACCCTCAATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
32518482 TACCC
1 TACCC
32518487 CTAGGGTGTT
Statistics
Matches: 428, Mismatches: 55, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
26 27 0.06
27 398 0.93
28 3 0.01
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:32521606 original size:40 final size:40
Alignment explanation
Indices: 32521553--32521744 Score: 253
Period size: 40 Copynumber: 4.8 Consensus size: 40
32521543 TATTACCACA
* * * * *
32521553 AGCACAATTGCCTTCGGGTCTTAACCCGG-GCATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATC-ACT
* * *
32521593 CGCACGAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATC-ACT
*
32521633 CGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
*
32521673 AGCACAAATGCCTTCGGGACTTAGCCCGGATCAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
*
32521713 AGCACAAATGCCTTCGGGACTTAGCCCGGATC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATC
32521745 TCATTCAAAT
Statistics
Matches: 140, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
40 136 0.97
41 4 0.03
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.22
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
Found at i:32530070 original size:79 final size:81
Alignment explanation
Indices: 32529888--32530118 Score: 326
Period size: 79 Copynumber: 2.9 Consensus size: 81
32529878 TATTACCACA
* * * * * * * *
32529888 AGCACAATTGCCTTCGGGTCTTAACCCGG-GCATAGCAACTCGCACGAATGCCTTCGGGTCTTAG
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATC-ACTAGCACAAATGCCTTCGGGACTTAG
*
32529952 CCCGGAT-ATATCAACT
65 CCCGGATCAAATCAACT
*
32529968 CGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACTAGCACAAATGCCTTC-GGACTTAGC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACTAGCACAAATGCCTTCGGGACTTAGC
32530032 CCGGATCAAATC-ACT
66 CCGGATCAAATCAACT
*
32530047 AGCACAAATGCCTTCGGGACTTAGCCCGGATCAAATCACTAGCACAAATGCCTTCGGGACTTAGC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACTAGCACAAATGCCTTCGGGACTTAGC
32530112 CCGGATC
66 CCGGATC
32530119 TCATTCAAAT
Statistics
Matches: 136, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
79 70 0.51
80 62 0.46
81 4 0.03
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.22
Consensus pattern (81 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACTAGCACAAATGCCTTCGGGACTTAGC
CCGGATCAAATCAACT
Found at i:32530117 original size:40 final size:40
Alignment explanation
Indices: 32529888--32530118 Score: 315
Period size: 40 Copynumber: 5.8 Consensus size: 40
32529878 TATTACCACA
* * * * * *
32529888 AGCACAATTGCCTTCGGGTCTTAACCCGG-GCATAGCAACT
1 AGCACAAATGCCTTCGGGACTTAGCCCGGATCAAATC-ACT
* * * *
32529928 CGCACGAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACT
1 AGCACAAATGCCTTCGGGACTTAGCCCGGATCAAATC-ACT
* *
32529968 CGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
1 AGCACAAATGCCTTCGGGACTTAGCCCGGATCAAATCACT
32530008 AGCACAAATGCCTTC-GGACTTAGCCCGGATCAAATCACT
1 AGCACAAATGCCTTCGGGACTTAGCCCGGATCAAATCACT
32530047 AGCACAAATGCCTTCGGGACTTAGCCCGGATCAAATCACT
1 AGCACAAATGCCTTCGGGACTTAGCCCGGATCAAATCACT
32530087 AGCACAAATGCCTTCGGGACTTAGCCCGGATC
1 AGCACAAATGCCTTCGGGACTTAGCCCGGATC
32530119 TCATTCAAAT
Statistics
Matches: 178, Mismatches: 10, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
39 38 0.21
40 136 0.76
41 4 0.02
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.22
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGACTTAGCCCGGATCAAATCACT
Found at i:32532142 original size:40 final size:39
Alignment explanation
Indices: 32532085--32532187 Score: 143
Period size: 39 Copynumber: 2.6 Consensus size: 39
32532075 GGGCTGTCAC
* *
32532085 AGTAACTCACACAAATGCCTTCGGGACTTAACCTAGATTT
1 AGTAACTCACACAAATGCCTTCGGG-CTTAACCCAGAATT
* * *
32532125 AGTAACTCACACCAATGCCTTCGGGCTTAGCCCGGAATT
1 AGTAACTCACACAAATGCCTTCGGGCTTAACCCAGAATT
*
32532164 AGTAACTCGCACAAATGCCTTCGG
1 AGTAACTCACACAAATGCCTTCGG
32532188 ATCTTAGTCC
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
39 32 0.57
40 24 0.43
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.24
Consensus pattern (39 bp):
AGTAACTCACACAAATGCCTTCGGGCTTAACCCAGAATT
Found at i:32532181 original size:39 final size:40
Alignment explanation
Indices: 32532085--32532240 Score: 167
Period size: 40 Copynumber: 3.9 Consensus size: 40
32532075 GGGCTGTCAC
* ** *
32532085 AGTAACTCACACAAATGCCTTCGGGACTTAACCTAGATTT
1 AGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGAATT
*
32532125 AGTAACTCACACCAATGCCTTCGGG-CTTAGCCCGGAATT
1 AGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGAATT
* *
32532164 AGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG-ATAT
1 AGTAACTCACACAAATGCCTTCGGGA-CTTAGCCCGGAAT-T
* * *
32532204 GGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AGTAACTCA-CACAAATGCCTTCGGGACTTAGCCCGGA
32532241 CATCATTCGA
Statistics
Matches: 97, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
38 2 0.02
39 32 0.33
40 54 0.56
41 9 0.09
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGAATT
Found at i:32540336 original size:79 final size:81
Alignment explanation
Indices: 32540227--32540409 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
32540217 TACTCGTTCA
* *
32540227 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
32540290 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
32540307 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
32540370 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
32540386 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
32540410 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:32540409 original size:40 final size:40
Alignment explanation
Indices: 32540206--32540409 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
32540196 CGGAATTTAA
** *
32540206 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
32540246 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
32540286 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
32540325 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
32540365 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
32540405 CCGGA
1 CCGGA
32540410 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:32542336 original size:27 final size:26
Alignment explanation
Indices: 32542296--32542355 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
32542286 CCACATATAT
* *
32542296 ATATCTATTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
32542322 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
32542349 ATATCTG
1 ATATCTG
32542356 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:32542508 original size:25 final size:25
Alignment explanation
Indices: 32542473--32542540 Score: 93
Period size: 25 Copynumber: 2.7 Consensus size: 25
32542463 TTGCATTCAC
* *
32542473 ATTCTGGTTCTGATTCTGTTACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
*
32542498 ATAT-TGATTCTGATTCTGTCACCTG
1 AT-TCTGATTCTGATTCTGTCACCTA
32542523 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
32542541 ATTCTGATTC
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
24 1 0.03
25 36 0.95
26 1 0.03
ACGTcount: A:0.18, C:0.19, G:0.16, T:0.47
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTA
Found at i:32542513 original size:6 final size:6
Alignment explanation
Indices: 32542502--32542576 Score: 82
Period size: 6 Copynumber: 12.2 Consensus size: 6
32542492 TACCTAATAT
*
32542502 TGATTC TGATTC TG-TCACC TGATTC TGATTC TGATTC TGATTC TGATTC
1 TGATTC TGATTC TGAT--TC TGATTC TGATTC TGATTC TGATTC TGATTC
*
32542551 TG-TCACC TGATTC TGATTC TGATTC T
1 TGAT--TC TGATTC TGATTC TGATTC T
32542577 CATTTTGACT
Statistics
Matches: 59, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
5 2 0.03
6 49 0.83
7 6 0.10
8 2 0.03
ACGTcount: A:0.16, C:0.21, G:0.16, T:0.47
Consensus pattern (6 bp):
TGATTC
Done.