genome.fa.s900.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2649_ERROPOS42313+
Parameters: 2 7 7 80 10 50 1000
Length:  196192

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5811--5988	27	6.6	27	83	3	205	26	15	28	29	1.96
5812--5967	82	1.9	81	88	3	233	26	15	28	29	1.96
5808--5988	82	2.2	81	83	2	229	27	15	27	29	1.96
12302--12332	16	1.9	16	93	0	53	51	0	0	48	1.00
15705--15748	21	2.2	20	83	4	52	34	15	22	27	1.95
20988--21023	17	2.1	17	89	0	54	8	47	2	41	1.48
21584--21618	18	2.0	18	88	5	54	20	25	37	17	1.94
25191--25284	25	3.8	25	94	1	154	25	23	25	25	2.00
26089--26166	27	2.9	27	79	11	88	21	20	21	35	1.96
26207--26314	27	3.9	27	75	13	94	31	9	18	40	1.82
26204--26373	54	3.1	55	80	5	177	32	10	17	39	1.83
26290--26484	27	6.9	27	72	13	142	29	9	22	38	1.85
26186--26484	54	5.4	53	73	13	170	30	9	21	39	1.85
26381--26525	27	5.4	27	79	4	105	32	8	22	36	1.85
26412--26606	54	3.6	54	78	1	167	33	7	24	35	1.83
26475--26579	27	3.9	27	87	0	129	40	6	22	30	1.80
29716--29814	28	3.5	29	86	9	125	27	15	28	29	1.96
33051--33199	40	3.7	40	88	6	212	26	21	26	25	1.99
33457--33500	22	2.0	21	83	16	54	31	18	13	36	1.90
38767--39327	47	11.8	47	91	3	872	33	7	29	29	1.85
38767--39327	96	5.9	95	91	3	871	33	7	29	29	1.85
38768--39327	143	3.9	143	95	0	962	33	7	29	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39446--39524	37	2.1	37	88	0	113	25	20	30	24	1.98
45093--45281	40	4.7	40	87	5	292	27	23	24	24	2.00
45093--45304	80	2.7	78	86	7	293	27	23	24	24	2.00
45530--45596	33	2.0	33	100	0	134	34	14	14	35	1.88
45572--45615	22	2.0	21	83	16	54	31	18	13	36	1.90
48893--48938	20	2.3	20	79	17	60	26	15	28	30	1.96
48931--49065	60	2.2	60	84	6	166	29	20	24	25	1.99
50631--50676	23	2.0	23	100	0	92	43	8	4	43	1.55
53767--53795	11	2.5	12	88	11	51	58	0	24	17	1.38
57639--57703	31	2.1	32	97	2	123	20	10	26	43	1.84
58669--58751	24	3.3	24	75	10	60	43	20	20	15	1.88
58703--58771	27	2.6	26	77	13	79	39	20	20	20	1.93
58689--58756	27	2.7	26	78	10	70	42	22	17	17	1.89
62879--62961	27	3.1	26	86	5	112	19	22	21	36	1.95
65449--65512	31	2.1	31	90	0	101	25	23	15	35	1.94
65705--65840	24	5.6	24	88	9	197	30	20	20	28	1.98
67346--67471	28	4.5	28	94	1	218	32	29	12	25	1.93
75463--75588	28	4.5	28	94	1	209	33	27	12	26	1.93
86029--86072	13	3.4	13	93	0	79	77	2	6	13	1.07
91261--91320	20	3.1	19	76	9	66	25	30	10	35	1.88
108473--108605	41	3.2	41	82	6	128	20	24	16	38	1.93
108862--109126	131	2.0	131	94	0	467	32	4	21	40	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115226--115394	41	4.2	40	77	1	140	21	27	17	33	1.96
119293--119382	25	3.6	25	76	16	80	23	17	24	34	1.96
119272--119395	50	2.5	50	80	5	135	25	19	23	32	1.98
119318--119395	25	3.1	25	86	0	111	25	20	21	32	1.98
131410--131753	51	6.8	51	73	9	237	29	15	25	29	1.96
131410--131645	102	2.3	102	83	2	296	28	15	26	29	1.96
131567--131740	50	3.5	50	83	3	199	31	14	25	28	1.95
139629--139669	20	2.1	18	86	13	55	9	26	19	43	1.82
142298--142322	12	2.1	12	100	0	50	16	8	16	60	1.58
159329--159414	37	2.3	36	80	9	102	56	9	15	18	1.64
163246--163368	55	2.2	55	91	0	192	23	21	28	26	1.99
174593--174722	49	2.6	48	84	6	161	31	35	16	16	1.91
174605--174736	49	2.7	48	82	5	131	29	34	18	17	1.94
185286--185463	27	6.6	27	84	3	205	29	28	15	26	1.96
185307--185462	82	1.9	81	88	3	233	29	28	15	26	1.96
193461--193638	27	6.6	27	84	3	205	29	28	15	26	1.96
193482--193637	82	1.9	81	88	3	233	29	28	15	26	1.96

Tables:   1

The End!