Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold34
Parameters: 2 7 7 80 10 50 1000
Length:  329687

Tables:   1   2   

This is table  2  of  2  ( 170 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
231829--231875
23
2.1
23
84
7
62
51
12
4
31
1.59
233570--233632
21
3.0
21
88
2
81
34
31
4
28
1.78
242473--242569
30
3.2
30
72
8
99
28
16
26
27
1.97
244639--244680
21
2.1
19
86
8
57
7
19
0
73
1.05
244694--244724
11
2.8
11
100
0
62
6
16
0
77
0.97
244728--244758
12
2.6
12
100
0
62
25
16
12
45
1.83
244819--244868
6
8.2
6
81
16
50
2
20
2
76
0.99
244808--244878
37
1.9
37
86
11
101
2
18
2
76
1.04
244804--244864
16
3.8
16
77
14
63
3
19
1
75
1.03
245795--245880
12
7.1
12
71
6
66
12
9
3
74
1.18
245791--245837
24
2.0
24
92
8
80
12
4
6
76
1.12
247556--247652
30
3.2
30
72
8
99
28
16
26
27
1.97
251176--251220
20
2.2
20
84
7
56
51
11
6
31
1.63
254215--254272
23
2.5
23
88
0
89
34
25
6
32
1.83
256364--256401
20
1.9
20
84
10
51
21
28
15
34
1.94
256408--256460
20
2.6
20
75
3
52
26
26
15
32
1.95
257779--257879
52
1.9
52
93
0
175
32
20
18
27
1.96
258414--258467
20
2.7
20
82
0
63
24
20
18
37
1.94
258414--258487
30
2.5
30
86
8
98
21
20
18
39
1.93
258414--258478
20
3.2
20
71
16
53
23
21
16
38
1.93
270734--270794
10
6.0
11
70
22
53
27
16
26
29
1.97
270727--270796
20
3.5
20
86
5
99
30
17
25
27
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
273327--273363
10
3.7
10
88
0
56
16
2
5
75
1.10
273327--273364
20
1.9
20
94
0
67
18
2
5
73
1.14
273739--273785
20
2.3
20
85
0
67
29
36
12
21
1.91
276901--276963
16
3.8
16
75
8
54
11
26
3
58
1.47
276866--276930
27
2.4
27
75
14
62
7
21
3
67
1.30
288139--288183
23
1.9
24
86
4
65
35
4
13
46
1.63
293089--293140
24
2.2
24
83
10
63
11
23
3
61
1.46
293239--293266
14
2.0
14
100
0
56
14
7
7
71
1.29
293244--293288
24
1.9
23
90
4
72
6
4
6
82
0.95
293258--293317
13
4.7
13
75
15
54
11
6
3
78
1.06
298263--298325
21
3.0
21
88
2
81
33
31
4
30
1.78
299123--299198
20
3.8
20
82
5
93
25
25
17
32
1.96
299134--299198
10
6.6
10
72
13
55
26
26
18
29
1.98
299122--299198
40
2.0
40
87
7
113
24
24
18
32
1.97
301003--301046
11
4.7
9
86
13
54
75
6
0
18
1.02
301000--301048
10
5.0
10
80
14
57
73
6
0
20
1.04
301011--301047
11
3.5
11
96
3
67
75
8
0
16
1.02
303572--303646
20
3.8
20
85
5
100
25
25
17
32
1.97
303577--303646
10
7.1
10
72
24
60
25
27
17
30
1.97
303571--303646
40
1.9
40
86
7
111
25
25
18
31
1.97
312151--312200
14
3.5
15
81
8
59
4
20
0
76
0.95
316689--316722
18
1.9
18
88
5
52
26
17
0
55
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
317631--317717
27
3.1
27
73
6
75
12
10
2
74
1.16
317631--317694
12
5.1
12
78
10
56
15
7
1
75
1.11
320006--320067
20
3.0
21
83
7
72
33
32
3
30
1.74
322817--322851
18
1.9
18
88
11
54
22
20
0
57
1.41
322809--322875
30
2.4
28
85
12
84
13
20
0
65
1.26
323728--323778
14
3.8
13
77
10
50
3
15
3
76
1.08

Tables:   1   2

The End!