Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold3138
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 116776
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.32
Found at i:8270 original size:40 final size:40
Alignment explanation
Indices: 8104--8326 Score: 233
Period size: 39 Copynumber: 5.7 Consensus size: 40
8094 GCTCCTCGTT
* * * *
8104 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
8144 C-AATGCCTTCGGGACTTAACCCGGA-TTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
8182 CGAATGCCTTCGGGACTTAACCCGGATTTAGT-ACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
8221 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
8261 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
8302 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
8327 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 20, Indels: 16
0.81 0.10 0.08
Matches are distributed among these distances:
38 12 0.08
39 81 0.52
40 51 0.33
41 11 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:8335 original size:41 final size:41
Alignment explanation
Indices: 8258--8335 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
8248 TTTGTATCTC
* * *
8258 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
8299 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
8336 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:16011 original size:39 final size:40
Alignment explanation
Indices: 15966--16188 Score: 242
Period size: 39 Copynumber: 5.7 Consensus size: 40
15956 GCTCCTCGTT
* * * *
15966 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
16006 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
16045 CGAATGCCTTCGGGACTTAACCCGGATTTAGT-ACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
16084 CAAAGGCCTTCGGG-CTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
16123 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
16164 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
16189 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 18, Indels: 16
0.82 0.09 0.08
Matches are distributed among these distances:
38 14 0.09
39 76 0.48
40 56 0.36
41 11 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:16197 original size:41 final size:41
Alignment explanation
Indices: 16120--16197 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
16110 TTTGTATCTC
* * *
16120 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
16161 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
16198 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:20941 original size:20 final size:20
Alignment explanation
Indices: 20918--20961 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
20908 ATCTCTATTT
20918 TTTTAAACCACAAACAGCTG
1 TTTTAAACCACAAACAGCTG
* *
20938 TTTT-ACCCAGAAACAGCTG
1 TTTTAAACCACAAACAGCTG
20957 TTTTA
1 TTTTA
20962 CCCAGAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (20 bp):
TTTTAAACCACAAACAGCTG
Found at i:20953 original size:19 final size:19
Alignment explanation
Indices: 20929--20969 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
20919 TTTAAACCAC
20929 AAACAGCTGTTTTACCCAG
1 AAACAGCTGTTTTACCCAG
20948 AAACAGCTGTTTTACCCAG
1 AAACAGCTGTTTTACCCAG
20967 AAA
1 AAA
20970 ATTTTCGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.37, C:0.24, G:0.15, T:0.24
Consensus pattern (19 bp):
AAACAGCTGTTTTACCCAG
Found at i:21739 original size:31 final size:31
Alignment explanation
Indices: 21704--21795 Score: 83
Period size: 26 Copynumber: 3.2 Consensus size: 31
21694 AATAAAGTCA
21704 TGCATTATGTAACTTTCATGTTAGTTAAGTT
1 TGCATTATGTAACTTTCATGTTAGTTAAGTT
* * *
21735 TGCATCAT-TAA--AT-A-GTCAAGTT-AGTT
1 TGCATTATGTAACTTTCATGT-TAGTTAAGTT
*
21761 T-AATTATGTAACTTTCATGTTAGTTAA-TT
1 TGCATTATGTAACTTTCATGTTAGTTAAGTT
21790 TGCATT
1 TGCATT
21796 TCAAAACCAT
Statistics
Matches: 45, Mismatches: 8, Indels: 17
0.64 0.11 0.24
Matches are distributed among these distances:
25 4 0.09
26 10 0.22
27 5 0.11
28 2 0.04
29 8 0.18
30 9 0.20
31 7 0.16
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.47
Consensus pattern (31 bp):
TGCATTATGTAACTTTCATGTTAGTTAAGTT
Found at i:30879 original size:12 final size:13
Alignment explanation
Indices: 30864--30896 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
30854 AAAAAGCTTG
30864 AAAAAAAA-TTCA
1 AAAAAAAATTTCA
*
30876 AAAAAAAATTTGA
1 AAAAAAAATTTCA
30889 AAAAAAAA
1 AAAAAAAA
30897 CTAGTTTCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 8 0.42
13 11 0.58
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (13 bp):
AAAAAAAATTTCA
Found at i:30958 original size:14 final size:14
Alignment explanation
Indices: 30934--30987 Score: 101
Period size: 14 Copynumber: 3.9 Consensus size: 14
30924 GGATATCAAG
30934 TTGTGAAAAAAAAA
1 TTGTGAAAAAAAAA
30948 TT-TGAAAAAAAAA
1 TTGTGAAAAAAAAA
30961 TTGTGAAAAAAAAA
1 TTGTGAAAAAAAAA
30975 TTGTGAAAAAAAA
1 TTGTGAAAAAAAA
30988 GAGAGCTAGT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
13 13 0.33
14 26 0.67
ACGTcount: A:0.65, C:0.00, G:0.13, T:0.22
Consensus pattern (14 bp):
TTGTGAAAAAAAAA
Found at i:30964 original size:27 final size:28
Alignment explanation
Indices: 30934--30987 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 28
30924 GGATATCAAG
30934 TTGTGAAAAAAAAATT-TGAAAAAAAAA
1 TTGTGAAAAAAAAATTGTGAAAAAAAAA
30961 TTGTGAAAAAAAAATTGTGAAAAAAAA
1 TTGTGAAAAAAAAATTGTGAAAAAAAA
30988 GAGAGCTAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
27 16 0.62
28 10 0.38
ACGTcount: A:0.65, C:0.00, G:0.13, T:0.22
Consensus pattern (28 bp):
TTGTGAAAAAAAAATTGTGAAAAAAAAA
Found at i:31737 original size:6 final size:6
Alignment explanation
Indices: 31726--31751 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
31716 AGTTGTAAAG
31726 TTTTAT TTTTAT TTTTAT TTTTAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TT
31752 ATTTATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:34225 original size:17 final size:17
Alignment explanation
Indices: 34203--34242 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
34193 TTGTAGATTC
34203 GAAAAAAAAATCGAAAA
1 GAAAAAAAAATCGAAAA
*
34220 GAAAAAAAAATCGAGAA
1 GAAAAAAAAATCGAAAA
34237 -AAAAAA
1 GAAAAAA
34243 TTGAAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 6 0.27
17 16 0.73
ACGTcount: A:0.78, C:0.05, G:0.12, T:0.05
Consensus pattern (17 bp):
GAAAAAAAAATCGAAAA
Found at i:34238 original size:13 final size:12
Alignment explanation
Indices: 34220--34254 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
34210 AAATCGAAAA
34220 GAAAAAAAAATC
1 GAAAAAAAAATC
*
34232 GAGAAAAAAAATT
1 GA-AAAAAAAATC
34245 GAAAAAAAAA
1 GAAAAAAAAA
34255 GTCTAGAGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.77, C:0.03, G:0.11, T:0.09
Consensus pattern (12 bp):
GAAAAAAAAATC
Found at i:36474 original size:17 final size:18
Alignment explanation
Indices: 36435--36476 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
36425 AAGAAGAAAA
36435 ACAAAA-AGATGAGTGAT
1 ACAAAAGAGATGAGTGAT
*
36452 AAAAAAGAGA-GAGTGAT
1 ACAAAAGAGATGAGTGAT
*
36469 TCAAAAGA
1 ACAAAAGA
36477 AAAAGAAATG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 18 0.86
18 3 0.14
ACGTcount: A:0.57, C:0.05, G:0.24, T:0.14
Consensus pattern (18 bp):
ACAAAAGAGATGAGTGAT
Found at i:40314 original size:10 final size:10
Alignment explanation
Indices: 40299--40360 Score: 52
Period size: 10 Copynumber: 5.9 Consensus size: 10
40289 TTTGAACCAT
*
40299 TACCAATTCG
1 TACCAATTCA
*
40309 TACCAAATACCA
1 TACC-AAT-TCA
*
40321 TACCATTTCA
1 TACCAATTCA
40331 TACCAATTCCA
1 TACCAATT-CA
* *
40342 TACCATTTCG
1 TACCAATTCA
40352 TACCAATTC
1 TACCAATTC
40361 CCAAATACCA
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
10 22 0.54
11 14 0.34
12 5 0.12
ACGTcount: A:0.34, C:0.32, G:0.03, T:0.31
Consensus pattern (10 bp):
TACCAATTCA
Found at i:40344 original size:21 final size:21
Alignment explanation
Indices: 40299--40361 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
40289 TTTGAACCAT
* *
40299 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
*
40321 TACCATTTCATACCAATTCCA
1 TACCATTTCGTACCAATTCCA
40342 TACCATTTCGTACCAATTCC
1 TACCATTTCGTACCAATTCC
40362 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 25 0.68
22 12 0.32
ACGTcount: A:0.33, C:0.33, G:0.03, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:40706 original size:16 final size:16
Alignment explanation
Indices: 40685--40725 Score: 73
Period size: 16 Copynumber: 2.5 Consensus size: 16
40675 AAAAAAATTT
40685 GAAAAAAAAATTCGAAA
1 GAAAAAAAAATT-GAAA
40702 GAAAAAAAAATTGAAA
1 GAAAAAAAAATTGAAA
40718 GAAAAAAA
1 GAAAAAAA
40726 TTGTATACGA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 12 0.50
17 12 0.50
ACGTcount: A:0.76, C:0.02, G:0.12, T:0.10
Consensus pattern (16 bp):
GAAAAAAAAATTGAAA
Found at i:40723 original size:12 final size:13
Alignment explanation
Indices: 40660--40708 Score: 71
Period size: 13 Copynumber: 3.7 Consensus size: 13
40650 ATAGGTACGT
*
40660 AAAAAAAAGTTTG
1 AAAAAAAAATTTG
40673 AAAAAAAAATTTG
1 AAAAAAAAATTTG
*
40686 AAAAAAAAATTCG
1 AAAAAAAAATTTG
40699 AAAGAAAAAA
1 AAA-AAAAAA
40709 AAATTGAAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
13 27 0.82
14 6 0.18
ACGTcount: A:0.71, C:0.02, G:0.10, T:0.16
Consensus pattern (13 bp):
AAAAAAAAATTTG
Found at i:41905 original size:21 final size:23
Alignment explanation
Indices: 41860--41906 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
41850 TCACCTGCAA
* *
41860 TAAACACATTAAAATGAGTTTAT
1 TAAACACATTAAAATCAGCTTAT
41883 TAAACACATTAAAA-CA-CTTAT
1 TAAACACATTAAAATCAGCTTAT
41904 TAA
1 TAA
41907 TCATAACACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 1 0.05
23 14 0.64
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (23 bp):
TAAACACATTAAAATCAGCTTAT
Found at i:45737 original size:12 final size:12
Alignment explanation
Indices: 45709--45764 Score: 69
Period size: 12 Copynumber: 4.7 Consensus size: 12
45699 ACGGTATTGT
*
45709 AAAAAAAATAT-
1 AAAAAAAATTTG
45720 ATAAAAAAATTTG
1 A-AAAAAAATTTG
45733 AAAAAAAATTTG
1 AAAAAAAATTTG
* *
45745 AAAAAAAAATTC
1 AAAAAAAATTTG
45757 AAAAAAAA
1 AAAAAAAA
45765 AGTTTGTATT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
11 1 0.03
12 38 0.95
13 1 0.03
ACGTcount: A:0.75, C:0.02, G:0.04, T:0.20
Consensus pattern (12 bp):
AAAAAAAATTTG
Found at i:45824 original size:13 final size:13
Alignment explanation
Indices: 45806--45858 Score: 61
Period size: 13 Copynumber: 3.9 Consensus size: 13
45796 ATTTAGTATT
45806 GAAGAAAAAAAAA
1 GAAGAAAAAAAAA
*
45819 GAAGAAAAAAAATCG
1 GAAGAAAAAAAA--A
**
45834 GAATTAAAAAAAA
1 GAAGAAAAAAAAA
45847 GAAGAAAAAAAA
1 GAAGAAAAAAAA
45859 TCAAAATTGA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
13 22 0.69
15 10 0.31
ACGTcount: A:0.77, C:0.02, G:0.15, T:0.06
Consensus pattern (13 bp):
GAAGAAAAAAAAA
Found at i:45855 original size:29 final size:29
Alignment explanation
Indices: 45811--45875 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 29
45801 GTATTGAAGA
**
45811 AAAAAAAAGAAGAAAAAAAATCGGAATT-
1 AAAAAAAAGAAGAAAAAAAATCAAAATTG
45839 AAAAAAAAGAAGAAAAAAAATCAAAATTG
1 AAAAAAAAGAAGAAAAAAAATCAAAATTG
45868 AAAAAAAA
1 AAAAAAAA
45876 AGAGTGATTG
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
28 26 0.76
29 8 0.24
ACGTcount: A:0.77, C:0.03, G:0.11, T:0.09
Consensus pattern (29 bp):
AAAAAAAAGAAGAAAAAAAATCAAAATTG
Found at i:46710 original size:21 final size:20
Alignment explanation
Indices: 46681--46726 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
46671 AATCTTGAAT
*
46681 GAAATTGAGAGAAGAAAAAAA
1 GAAAATGAGAG-AGAAAAAAA
* *
46702 GAAAATGAGAGTGAGAAAAA
1 GAAAATGAGAGAGAAAAAAA
46722 GAAAA
1 GAAAA
46727 AAGAATTTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.65, C:0.00, G:0.26, T:0.09
Consensus pattern (20 bp):
GAAAATGAGAGAGAAAAAAA
Found at i:46742 original size:6 final size:6
Alignment explanation
Indices: 46733--46768 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
46723 AAAAAAGAAT
* *
46733 TTGAGA TTGAGA TTGAGA TTGATA TTGATA TTGAGA
1 TTGAGA TTGAGA TTGAGA TTGAGA TTGAGA TTGAGA
46769 AAAAAATTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.33, C:0.00, G:0.28, T:0.39
Consensus pattern (6 bp):
TTGAGA
Found at i:50978 original size:10 final size:10
Alignment explanation
Indices: 50963--51024 Score: 52
Period size: 10 Copynumber: 5.9 Consensus size: 10
50953 TTTGAACCAT
*
50963 TACCAATTCG
1 TACCAATTCA
*
50973 TACCAAATACCA
1 TACC-AAT-TCA
*
50985 TACCATTTCA
1 TACCAATTCA
50995 TACCAATTCCA
1 TACCAATT-CA
* *
51006 TACCATTTCG
1 TACCAATTCA
51016 TACCAATTC
1 TACCAATTC
51025 CCAAATACCA
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
10 22 0.54
11 14 0.34
12 5 0.12
ACGTcount: A:0.34, C:0.32, G:0.03, T:0.31
Consensus pattern (10 bp):
TACCAATTCA
Found at i:51008 original size:21 final size:21
Alignment explanation
Indices: 50963--51025 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
50953 TTTGAACCAT
* *
50963 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
*
50985 TACCATTTCATACCAATTCCA
1 TACCATTTCGTACCAATTCCA
51006 TACCATTTCGTACCAATTCC
1 TACCATTTCGTACCAATTCC
51026 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 25 0.68
22 12 0.32
ACGTcount: A:0.33, C:0.33, G:0.03, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:55465 original size:22 final size:22
Alignment explanation
Indices: 55435--55481 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
55425 TTTGGTATTT
55435 GGGAATTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
*
55457 GGGATTTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
55479 GGG
1 GGG
55482 TTCAAAAAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.32, C:0.04, G:0.40, T:0.23
Consensus pattern (22 bp):
GGGAATTGGTACGAAATGGTAA
Found at i:63530 original size:22 final size:21
Alignment explanation
Indices: 63499--63549 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
63489 ACCTCTTTGA
63499 ACCATTACCAATTCATACCAAAT
1 ACCA-TACCAATTCATACC-AAT
* *
63522 ACCATACCATTTCGTACCAAT
1 ACCATACCAATTCATACCAAT
*
63543 TCCATAC
1 ACCATAC
63550 TATTTCGAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 9 0.36
22 12 0.48
23 4 0.16
ACGTcount: A:0.37, C:0.33, G:0.02, T:0.27
Consensus pattern (21 bp):
ACCATACCAATTCATACCAAT
Found at i:63549 original size:21 final size:21
Alignment explanation
Indices: 63504--63566 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
63494 TTTGAACCAT
* * *
63504 TACCAATTCATACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
63526 TACCATTTCGTACCAATTCCA
1 TACCATTTCGTACCAATTCCA
* *
63547 TACTATTTCGAACCAATTCC
1 TACCATTTCGTACCAATTCC
63567 CAAATACCAA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
21 24 0.67
22 12 0.33
ACGTcount: A:0.35, C:0.32, G:0.03, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:63938 original size:18 final size:18
Alignment explanation
Indices: 63917--63956 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
63907 GATTGAGAGT
* * *
63917 GAAAAGGAATGTGAAACA
1 GAAAAGAAAAGTGAAAAA
63935 GAAAAGAAAAGTGAAAAA
1 GAAAAGAAAAGTGAAAAA
63953 GAAA
1 GAAA
63957 TTGAAGAAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.65, C:0.03, G:0.25, T:0.07
Consensus pattern (18 bp):
GAAAAGAAAAGTGAAAAA
Found at i:67909 original size:21 final size:23
Alignment explanation
Indices: 67864--67910 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
67854 TCACTTGCAA
* *
67864 TAAACACATTAAAATGAGTTTAT
1 TAAACACATTAAAATCAGCTTAT
67887 TAAACACATTAAAA-CA-CTTAT
1 TAAACACATTAAAATCAGCTTAT
67908 TAA
1 TAA
67911 TCATAACACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 1 0.05
23 14 0.64
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (23 bp):
TAAACACATTAAAATCAGCTTAT
Found at i:69754 original size:4 final size:4
Alignment explanation
Indices: 69745--69775 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
69735 TTAAACTAAG
69745 TAAA TAAA TAAA TAAA TAAA TAAA -AAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
69776 ACTTTACAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
TAAA
Found at i:71148 original size:23 final size:22
Alignment explanation
Indices: 71096--71148 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
71086 TCCACGTCTT
*
71096 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
71118 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
71141 TTTCTTTT
1 TTTCTTTT
71149 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:72459 original size:16 final size:18
Alignment explanation
Indices: 72438--72471 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
72428 TGAATTTCGT
72438 ATTTTTGA-T-TTTTTTG
1 ATTTTTGACTATTTTTTG
72454 ATTTTTGACTATTTTTTG
1 ATTTTTGACTATTTTTTG
72472 CGGGAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 1 0.06
18 7 0.44
ACGTcount: A:0.15, C:0.03, G:0.12, T:0.71
Consensus pattern (18 bp):
ATTTTTGACTATTTTTTG
Found at i:73944 original size:18 final size:18
Alignment explanation
Indices: 73923--73962 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
73913 GATTGAGAGT
* * *
73923 GAAAAGGAATGTGAAACA
1 GAAAAGAAAAGTGAAAAA
73941 GAAAAGAAAAGTGAAAAA
1 GAAAAGAAAAGTGAAAAA
73959 GAAA
1 GAAA
73963 TTGAAGAAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.65, C:0.03, G:0.25, T:0.07
Consensus pattern (18 bp):
GAAAAGAAAAGTGAAAAA
Found at i:77254 original size:21 final size:23
Alignment explanation
Indices: 77209--77255 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
77199 TCACCTGCAA
* *
77209 TAAACACATTAAAATGAGTTTAT
1 TAAACACATTAAAATCAGCTTAT
77232 TAAACACATTAAAA-CA-CTTAT
1 TAAACACATTAAAATCAGCTTAT
77253 TAA
1 TAA
77256 TCATAACACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 1 0.05
23 14 0.64
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (23 bp):
TAAACACATTAAAATCAGCTTAT
Found at i:82210 original size:22 final size:19
Alignment explanation
Indices: 82173--82213 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 19
82163 CTCCCTCAAT
82173 TTTTTCTTTCTTTTTTTCA
1 TTTTTCTTTCTTTTTTTCA
82192 TTTTTCTTCTCTCTCTTTTTCA
1 TTTTTCTT-TCT-T-TTTTTCA
82214 ATCTTTTCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.42
20 3 0.16
21 1 0.05
22 7 0.37
ACGTcount: A:0.05, C:0.22, G:0.00, T:0.73
Consensus pattern (19 bp):
TTTTTCTTTCTTTTTTTCA
Found at i:84259 original size:14 final size:15
Alignment explanation
Indices: 84224--84295 Score: 110
Period size: 15 Copynumber: 4.7 Consensus size: 15
84214 TAGCTTCTTC
84224 TTTTTTTTTCACGAAAA
1 TTTTTTTTTCACG--AA
84241 TTTTTTTTTCACGAA
1 TTTTTTTTTCACGAA
*
84256 TTTTTTTTTCAAGAA
1 TTTTTTTTTCACGAA
84271 -TTTTTTTTCACGAA
1 TTTTTTTTTCACGAA
84285 TTTTTTTTTCA
1 TTTTTTTTTCA
84296 ACTTGATATC
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
14 13 0.25
15 26 0.50
17 13 0.25
ACGTcount: A:0.22, C:0.11, G:0.06, T:0.61
Consensus pattern (15 bp):
TTTTTTTTTCACGAA
Found at i:84274 original size:29 final size:30
Alignment explanation
Indices: 84224--84296 Score: 112
Period size: 29 Copynumber: 2.4 Consensus size: 30
84214 TAGCTTCTTC
84224 TTTTTTTTTCACGAAAATTTTTTTTTCACGAA
1 TTTTTTTTTCA--AAAATTTTTTTTTCACGAA
*
84256 TTTTTTTTTCAAGAA-TTTTTTTTCACGAA
1 TTTTTTTTTCAAAAATTTTTTTTTCACGAA
84285 TTTTTTTTTCAA
1 TTTTTTTTTCAA
84297 CTTGATATCC
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
29 26 0.65
30 3 0.08
32 11 0.28
ACGTcount: A:0.23, C:0.11, G:0.05, T:0.60
Consensus pattern (30 bp):
TTTTTTTTTCAAAAATTTTTTTTTCACGAA
Found at i:84353 original size:11 final size:11
Alignment explanation
Indices: 84337--84381 Score: 81
Period size: 11 Copynumber: 4.0 Consensus size: 11
84327 AAACCAAATT
84337 TTTTTTTTGAA
1 TTTTTTTTGAA
84348 TTTTTTTTGAA
1 TTTTTTTTGAA
84359 TTTTTTTTTGAA
1 -TTTTTTTTGAA
84371 TTTTTTTTGAA
1 TTTTTTTTGAA
84382 GAAACTACTA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
11 22 0.67
12 11 0.33
ACGTcount: A:0.18, C:0.00, G:0.09, T:0.73
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:84353 original size:12 final size:12
Alignment explanation
Indices: 84336--84378 Score: 79
Period size: 12 Copynumber: 3.7 Consensus size: 12
84326 GAAACCAAAT
84336 TTTTTTTTTGAA
1 TTTTTTTTTGAA
84348 -TTTTTTTTGAA
1 TTTTTTTTTGAA
84359 TTTTTTTTTGAA
1 TTTTTTTTTGAA
84371 TTTTTTTT
1 TTTTTTTT
84379 GAAGAAACTA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
11 11 0.37
12 19 0.63
ACGTcount: A:0.14, C:0.00, G:0.07, T:0.79
Consensus pattern (12 bp):
TTTTTTTTTGAA
Found at i:84366 original size:23 final size:23
Alignment explanation
Indices: 84336--84381 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
84326 GAAACCAAAT
84336 TTTTTTTTTGAATTTTTTTTGAA
1 TTTTTTTTTGAATTTTTTTTGAA
84359 TTTTTTTTTGAATTTTTTTTGAA
1 TTTTTTTTTGAATTTTTTTTGAA
84382 GAAACTACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.09, T:0.74
Consensus pattern (23 bp):
TTTTTTTTTGAATTTTTTTTGAA
Found at i:85033 original size:20 final size:20
Alignment explanation
Indices: 85008--85062 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
84998 TGTGGTTCAA
*
85008 CTCATTCGAGCTCAAGTTAG
1 CTCATTCGAGCTCAAGTCAG
*
85028 CTCATTCGTGCTCAAGTCAG
1 CTCATTCGAGCTCAAGTCAG
*
85048 CTCATTCAAGCTCAA
1 CTCATTCGAGCTCAA
85063 TTTAACTCGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (20 bp):
CTCATTCGAGCTCAAGTCAG
Found at i:87328 original size:21 final size:23
Alignment explanation
Indices: 87283--87329 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
87273 TCACCTGCAA
* *
87283 TAAACACATTAAAATGAGTTTAT
1 TAAACACATTAAAATCAGCTTAT
87306 TAAACACATTAAAA-CA-CTTAT
1 TAAACACATTAAAATCAGCTTAT
87327 TAA
1 TAA
87330 TCATAACACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 1 0.05
23 14 0.64
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (23 bp):
TAAACACATTAAAATCAGCTTAT
Found at i:89787 original size:16 final size:16
Alignment explanation
Indices: 89766--89797 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
89756 TAATGTGTTT
89766 TGCTGCTATTGTTTAA
1 TGCTGCTATTGTTTAA
*
89782 TGCTGCTGTTGTTTAA
1 TGCTGCTATTGTTTAA
89798 ATGCAGAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.12, G:0.22, T:0.50
Consensus pattern (16 bp):
TGCTGCTATTGTTTAA
Found at i:90088 original size:72 final size:73
Alignment explanation
Indices: 89950--90097 Score: 192
Period size: 72 Copynumber: 2.0 Consensus size: 73
89940 GCAGGTACAT
*
89950 GGACGACATTTAAAGAAAAAGTGGCTGCTGCATTTTTCCAAAGCTGCCGAATTTATTGAGTGCAT
1 GGACGACATTTAAAGAAAAAGTGGCTGCTGCATTTTTCCAAAGCTGCCGAATTTAGTGAGTGCAT
90015 GGGACTTG
66 GGGACTTG
* ** * * * * *
90023 GGACGGCATTTAAAGCGAAAGTTGCTGTTGTA-TTTTCCCAA-CTAGCCGAATTTAGTGTGTGCA
1 GGACGACATTTAAAGAAAAAGTGGCTGCTGCATTTTTCCAAAGCT-GCCGAATTTAGTGAGTGCA
90086 TGGGACTTG
65 TGGGACTTG
90095 GGA
1 GGA
90098 TAGCATTAAA
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
71 2 0.03
72 37 0.57
73 26 0.40
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (73 bp):
GGACGACATTTAAAGAAAAAGTGGCTGCTGCATTTTTCCAAAGCTGCCGAATTTAGTGAGTGCAT
GGGACTTG
Found at i:93979 original size:18 final size:18
Alignment explanation
Indices: 93939--93973 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
93929 AAAAGAAGAA
93939 AAAAAAAAGATGAGTGAT
1 AAAAAAAAGATGAGTGAT
*
93957 AAAAAAGAGA-GAGTGAT
1 AAAAAAAAGATGAGTGAT
93974 TCAAAAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.60, C:0.00, G:0.26, T:0.14
Consensus pattern (18 bp):
AAAAAAAAGATGAGTGAT
Found at i:98742 original size:11 final size:11
Alignment explanation
Indices: 98726--98764 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
98716 AATTTGAAAT
98726 AAAAATTCAAA
1 AAAAATTCAAA
98737 AAAAATTCAAAA
1 AAAAATTC-AAA
98749 AAAAATTCAAA
1 AAAAATTCAAA
98760 AAAAA
1 AAAAA
98765 AATTCAATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 16 0.59
12 11 0.41
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAAATTCAAA
Found at i:98750 original size:13 final size:12
Alignment explanation
Indices: 98726--98771 Score: 76
Period size: 12 Copynumber: 3.8 Consensus size: 12
98716 AATTTGAAAT
98726 AAAAATTC-AAA
1 AAAAATTCAAAA
98737 AAAAATTCAAAA
1 AAAAATTCAAAA
98749 AAAAATTCAAAAA
1 AAAAATTC-AAAA
98762 AAAAATTCAA
1 AAAAATTCAA
98772 TTTGTTTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
11 8 0.24
12 13 0.39
13 12 0.36
ACGTcount: A:0.74, C:0.09, G:0.00, T:0.17
Consensus pattern (12 bp):
AAAAATTCAAAA
Found at i:99729 original size:21 final size:18
Alignment explanation
Indices: 99705--99755 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 18
99695 AGTACGAGCG
99705 AGAAAAAGAAATTGAAAGAAA
1 AGAAAAAGAAATTG--A-AAA
*
99726 AGAAAAAGAGATTGAAAA
1 AGAAAAAGAAATTGAAAA
99744 AGAAAAAGAAAT
1 AGAAAAAGAAAT
99756 CAAAAAAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 14 0.50
19 1 0.04
21 13 0.46
ACGTcount: A:0.71, C:0.00, G:0.20, T:0.10
Consensus pattern (18 bp):
AGAAAAAGAAATTGAAAA
Found at i:99761 original size:18 final size:18
Alignment explanation
Indices: 99723--99762 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
99713 AAATTGAAAG
* **
99723 AAAAGAAAAAGAGATTGA
1 AAAAGAAAAAGAAATCAA
99741 AAAAGAAAAAGAAATCAA
1 AAAAGAAAAAGAAATCAA
99759 AAAA
1 AAAA
99763 AAGAGTGAGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.75, C:0.03, G:0.15, T:0.07
Consensus pattern (18 bp):
AAAAGAAAAAGAAATCAA
Found at i:102953 original size:22 final size:22
Alignment explanation
Indices: 102925--102970 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
102915 CCTTTTTGAA
102925 CCTTACCATTTCGTACCAAATC
1 CCTTACCATTTCGTACCAAATC
*
102947 CCTTACCATTTCGTACCAATTC
1 CCTTACCATTTCGTACCAAATC
102969 CC
1 CC
102971 AAATACCAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.24, C:0.39, G:0.04, T:0.33
Consensus pattern (22 bp):
CCTTACCATTTCGTACCAAATC
Found at i:103297 original size:12 final size:12
Alignment explanation
Indices: 103282--103306 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
103272 AAAAGAGTTC
103282 GAAAAAAAAATT
1 GAAAAAAAAATT
103294 GAAAAAAAAATT
1 GAAAAAAAAATT
103306 G
1 G
103307 CATACGGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.16
Consensus pattern (12 bp):
GAAAAAAAAATT
Found at i:105556 original size:19 final size:19
Alignment explanation
Indices: 105495--105558 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
105485 CAAATGAGAG
105495 AAAAAGAAAAGAGCGAAAAT-A
1 AAAAAGAAAAGA---AAAATCA
* *
105516 CAAAAGAAAAGAAAAATGA
1 AAAAAGAAAAGAAAAATCA
*
105535 AAAAAGAAAAGAAAATTCA
1 AAAAAGAAAAGAAAAATCA
105554 AAAAA
1 AAAAA
105559 AGAGAATGAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
18 5 0.13
19 22 0.58
21 11 0.29
ACGTcount: A:0.75, C:0.05, G:0.14, T:0.06
Consensus pattern (19 bp):
AAAAAGAAAAGAAAAATCA
Found at i:109859 original size:22 final size:22
Alignment explanation
Indices: 109831--109877 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
109821 CCTTTTTGAA
109831 CCCTTACCATTTCGTACCAAAT
1 CCCTTACCATTTCGTACCAAAT
*
109853 CCCTTACCATTTCGTACCAATT
1 CCCTTACCATTTCGTACCAAAT
109875 CCC
1 CCC
109878 AAATACCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.23, C:0.40, G:0.04, T:0.32
Consensus pattern (22 bp):
CCCTTACCATTTCGTACCAAAT
Found at i:110802 original size:72 final size:73
Alignment explanation
Indices: 110667--110814 Score: 192
Period size: 72 Copynumber: 2.0 Consensus size: 73
110657 GCAGGTACAT
* * *
110667 GGACGGCATTTAAAGAAAAGGTGGCTGCTGCATTTTTCCAAAGCTGCCGAATTTATTGAGTGCAT
1 GGACGGCATTTAAAGAAAAGGTGGCTGCTGCATTTTTCCAAACCAGCCGAATTTAGTGAGTGCAT
110732 GGGACTTG
66 GGGACTTG
* * * * * *
110740 GGACGGCATTTAAAGCGAAA-GTTGCTGTTGTA-TTTTCCCAACCAGCCGAATTTAGTGTGTGCA
1 GGACGGCATTTAAAG-AAAAGGTGGCTGCTGCATTTTTCCAAACCAGCCGAATTTAGTGAGTGCA
110803 TGGGACTTG
65 TGGGACTTG
110812 GGA
1 GGA
110815 TAGCATTAAA
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
72 38 0.58
73 24 0.37
74 3 0.05
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (73 bp):
GGACGGCATTTAAAGAAAAGGTGGCTGCTGCATTTTTCCAAACCAGCCGAATTTAGTGAGTGCAT
GGGACTTG
Done.