genome.fa.s926.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold621
Parameters: 2 7 7 80 10 50 1000
Length:  109876

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1732	602	2.9	604	97	1	3273	27	23	16	31	1.96
12366--12402	19	1.9	19	94	0	65	27	16	16	40	1.89
13133--13186	25	2.2	25	89	0	81	35	24	14	25	1.94
31215--31244	9	3.3	9	100	0	60	36	33	20	10	1.86
32704--32737	13	2.6	13	90	0	50	32	5	14	47	1.69
35443--35532	21	4.2	20	72	13	65	43	8	2	45	1.47
39135--39175	21	2.0	21	81	18	50	21	26	19	31	1.97
45623--45716	20	4.7	19	74	11	73	42	18	25	13	1.87
47192--47582	209	1.9	210	81	6	486	48	16	5	29	1.68
54233--54309	38	2.0	38	90	5	120	24	19	18	37	1.94
60280--60606	85	3.9	85	89	1	460	36	23	16	22	1.94
60888--60947	30	2.0	30	84	12	79	35	20	10	35	1.86
63602--63685	20	4.2	20	69	6	55	36	21	30	10	1.88
71290--71344	22	2.5	23	79	5	60	30	5	20	43	1.74
88002--88035	17	1.9	17	88	5	50	44	5	5	44	1.52
89581--89836	132	1.9	132	93	0	440	26	22	18	32	1.97
89762--89945	44	4.2	44	87	1	262	27	26	15	30	1.96
91874--91898	13	1.9	13	100	0	50	32	24	24	20	1.98
94223--94669	43	10.5	43	78	5	451	18	33	31	16	1.93
94223--94669	85	5.3	83	83	6	522	18	33	31	16	1.93
94225--94669	128	3.5	127	77	8	350	18	33	31	16	1.93
94223--94669	170	2.6	168	86	3	581	18	33	31	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94674--94752	24	3.3	24	85	5	106	20	35	37	6	1.78
94962--95211	42	5.9	42	79	9	269	20	34	28	17	1.95
103114--103206	42	2.2	43	90	3	143	19	39	27	12	1.88
103192--103243	25	2.1	25	92	0	86	17	51	21	9	1.73
103217--104259	43	24.7	42	77	7	862	18	33	31	16	1.93
103241--103319	34	2.3	34	93	2	131	18	37	35	7	1.80
103217--104119	256	3.6	254	85	4	1089	17	33	32	16	1.92
103453--104188	299	2.5	298	92	1	1190	17	32	32	16	1.93
103283--104259	85	11.5	86	83	2	933	17	33	32	16	1.93
104264--104342	24	3.3	24	85	5	106	20	35	37	6	1.78
104550--104799	42	5.9	42	79	9	269	20	34	28	17	1.95

Tables:   1

The End!