Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1012
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 88480
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Found at i:5775 original size:32 final size:32
Alignment explanation
Indices: 5739--5982 Score: 326
Period size: 32 Copynumber: 7.6 Consensus size: 32
5729 TAAAAGGGTG
*
5739 ACACTTGAAAAGGAAACGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
** *
5771 ACACTTGAAAAGGATTTGTAGACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
**
5803 ACACTTGAAAAGGATTTGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* *
5835 ACACTTGAAAAGGAAACGTACACTTTGTATGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* **
5867 ACACTTGAAAAGTATTTGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* * * *
5899 GCACTTGAAAAGAAAATGTACCCTTTGTGTGC
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
5931 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* *
5963 ACCATTTGAAAAGGGAATGT
1 A-CACTTGAAAAGGAAATGT
5983 GCACCTCGGG
Statistics
Matches: 185, Mismatches: 26, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
32 169 0.91
33 16 0.09
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (32 bp):
ACACTTGAAAAGGAAATGTACACTTTGTGTGT
Found at i:5876 original size:96 final size:96
Alignment explanation
Indices: 5739--5976 Score: 368
Period size: 96 Copynumber: 2.5 Consensus size: 96
5729 TAAAAGGGTG
*
5739 ACACTTGAAAAGGAAACGTACACTTTGTGTGTACACTTGAAAAGGATTTGTAGACTTTGTGTGTA
1 ACACTTGAAAAGGAAACGTACACTTTGTGTGTACACTTGAAAAGGATTTGTACACTTTGTGTGTA
* ** *
5804 CACTTGAAAAGGATTTGTACACTTTGTGTGT
66 CACTTGAAAAGAAAATGTACACTTTGTGTGC
* * *
5835 ACACTTGAAAAGGAAACGTACACTTTGTATGTACACTTGAAAAGTATTTGTACACTTTGTGTGTG
1 ACACTTGAAAAGGAAACGTACACTTTGTGTGTACACTTGAAAAGGATTTGTACACTTTGTGTGTA
*
5900 CACTTGAAAAGAAAATGTACCCTTTGTGTGC
66 CACTTGAAAAGAAAATGTACACTTTGTGTGC
* *
5931 ACACTTGAAAAGGAAATGTACACTTTGTGTGTACCATTTGAAAAGG
1 ACACTTGAAAAGGAAACGTACACTTTGTGTGTA-CACTTGAAAAGG
5977 GAATGTGCAC
Statistics
Matches: 128, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
96 118 0.92
97 10 0.08
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.32
Consensus pattern (96 bp):
ACACTTGAAAAGGAAACGTACACTTTGTGTGTACACTTGAAAAGGATTTGTACACTTTGTGTGTA
CACTTGAAAAGAAAATGTACACTTTGTGTGC
Found at i:14300 original size:32 final size:32
Alignment explanation
Indices: 14264--14507 Score: 326
Period size: 32 Copynumber: 7.6 Consensus size: 32
14254 TAAAAGGGTG
*
14264 ACACTTGAAAAGGAAACGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
** *
14296 ACACTTGAAAAGGATTTGTAGACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
**
14328 ACACTTGAAAAGGATTTGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* *
14360 ACACTTGAAAAGGAAACGTACACTTTGTATGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* **
14392 ACACTTGAAAAGTATTTGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* * * *
14424 GCACTTGAAAAGAAAATGTACCCTTTGTGTGC
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
14456 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* *
14488 ACCATTTGAAAAGGGAATGT
1 A-CACTTGAAAAGGAAATGT
14508 GCACCTCGGG
Statistics
Matches: 185, Mismatches: 26, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
32 169 0.91
33 16 0.09
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (32 bp):
ACACTTGAAAAGGAAATGTACACTTTGTGTGT
Found at i:14401 original size:96 final size:96
Alignment explanation
Indices: 14264--14501 Score: 368
Period size: 96 Copynumber: 2.5 Consensus size: 96
14254 TAAAAGGGTG
*
14264 ACACTTGAAAAGGAAACGTACACTTTGTGTGTACACTTGAAAAGGATTTGTAGACTTTGTGTGTA
1 ACACTTGAAAAGGAAACGTACACTTTGTGTGTACACTTGAAAAGGATTTGTACACTTTGTGTGTA
* ** *
14329 CACTTGAAAAGGATTTGTACACTTTGTGTGT
66 CACTTGAAAAGAAAATGTACACTTTGTGTGC
* * *
14360 ACACTTGAAAAGGAAACGTACACTTTGTATGTACACTTGAAAAGTATTTGTACACTTTGTGTGTG
1 ACACTTGAAAAGGAAACGTACACTTTGTGTGTACACTTGAAAAGGATTTGTACACTTTGTGTGTA
*
14425 CACTTGAAAAGAAAATGTACCCTTTGTGTGC
66 CACTTGAAAAGAAAATGTACACTTTGTGTGC
* *
14456 ACACTTGAAAAGGAAATGTACACTTTGTGTGTACCATTTGAAAAGG
1 ACACTTGAAAAGGAAACGTACACTTTGTGTGTA-CACTTGAAAAGG
14502 GAATGTGCAC
Statistics
Matches: 128, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
96 118 0.92
97 10 0.08
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.32
Consensus pattern (96 bp):
ACACTTGAAAAGGAAACGTACACTTTGTGTGTACACTTGAAAAGGATTTGTACACTTTGTGTGTA
CACTTGAAAAGAAAATGTACACTTTGTGTGC
Found at i:22824 original size:32 final size:32
Alignment explanation
Indices: 22788--23031 Score: 326
Period size: 32 Copynumber: 7.6 Consensus size: 32
22778 TAAAAGGGTG
*
22788 ACACTTGAAAAGGAAACGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
** *
22820 ACACTTGAAAAGGATTTGTAGACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
**
22852 ACACTTGAAAAGGATTTGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* *
22884 ACACTTGAAAAGGAAACGTACACTTTGTATGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* **
22916 ACACTTGAAAAGTATTTGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* * * *
22948 GCACTTGAAAAGAAAATGTACCCTTTGTGTGC
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
22980 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* *
23012 ACCATTTGAAAAGGGAATGT
1 A-CACTTGAAAAGGAAATGT
23032 GCACCTCGGG
Statistics
Matches: 185, Mismatches: 26, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
32 169 0.91
33 16 0.09
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (32 bp):
ACACTTGAAAAGGAAATGTACACTTTGTGTGT
Found at i:22925 original size:96 final size:96
Alignment explanation
Indices: 22788--23025 Score: 368
Period size: 96 Copynumber: 2.5 Consensus size: 96
22778 TAAAAGGGTG
*
22788 ACACTTGAAAAGGAAACGTACACTTTGTGTGTACACTTGAAAAGGATTTGTAGACTTTGTGTGTA
1 ACACTTGAAAAGGAAACGTACACTTTGTGTGTACACTTGAAAAGGATTTGTACACTTTGTGTGTA
* ** *
22853 CACTTGAAAAGGATTTGTACACTTTGTGTGT
66 CACTTGAAAAGAAAATGTACACTTTGTGTGC
* * *
22884 ACACTTGAAAAGGAAACGTACACTTTGTATGTACACTTGAAAAGTATTTGTACACTTTGTGTGTG
1 ACACTTGAAAAGGAAACGTACACTTTGTGTGTACACTTGAAAAGGATTTGTACACTTTGTGTGTA
*
22949 CACTTGAAAAGAAAATGTACCCTTTGTGTGC
66 CACTTGAAAAGAAAATGTACACTTTGTGTGC
* *
22980 ACACTTGAAAAGGAAATGTACACTTTGTGTGTACCATTTGAAAAGG
1 ACACTTGAAAAGGAAACGTACACTTTGTGTGTA-CACTTGAAAAGG
23026 GAATGTGCAC
Statistics
Matches: 128, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
96 118 0.92
97 10 0.08
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.32
Consensus pattern (96 bp):
ACACTTGAAAAGGAAACGTACACTTTGTGTGTACACTTGAAAAGGATTTGTACACTTTGTGTGTA
CACTTGAAAAGAAAATGTACACTTTGTGTGC
Found at i:28791 original size:16 final size:17
Alignment explanation
Indices: 28770--28802 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
28760 ATAAAAACAG
*
28770 TTCTTTTTCATT-TTAA
1 TTCTTTTCCATTATTAA
28786 TTCTTTTCCATTATTAA
1 TTCTTTTCCATTATTAA
28803 ACTTTTGCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.21, C:0.15, G:0.00, T:0.64
Consensus pattern (17 bp):
TTCTTTTCCATTATTAA
Found at i:34812 original size:16 final size:17
Alignment explanation
Indices: 34791--34823 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
34781 ATAAAAACAG
*
34791 TTCTTTTTCATT-TTAA
1 TTCTTTTCCATTATTAA
34807 TTCTTTTCCATTATTAA
1 TTCTTTTCCATTATTAA
34824 ACTTTTGCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.21, C:0.15, G:0.00, T:0.64
Consensus pattern (17 bp):
TTCTTTTCCATTATTAA
Found at i:40837 original size:16 final size:17
Alignment explanation
Indices: 40816--40848 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
40806 ATAAAAACAG
*
40816 TTCTTTTTCATT-TTAA
1 TTCTTTTCCATTATTAA
40832 TTCTTTTCCATTATTAA
1 TTCTTTTCCATTATTAA
40849 ACTTTTGCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.21, C:0.15, G:0.00, T:0.64
Consensus pattern (17 bp):
TTCTTTTCCATTATTAA
Found at i:46865 original size:16 final size:17
Alignment explanation
Indices: 46844--46876 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
46834 ATAAAAACAG
*
46844 TTCTTTTTCATT-TTAA
1 TTCTTTTCCATTATTAA
46860 TTCTTTTCCATTATTAA
1 TTCTTTTCCATTATTAA
46877 ACTTTTGCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.21, C:0.15, G:0.00, T:0.64
Consensus pattern (17 bp):
TTCTTTTCCATTATTAA
Found at i:52892 original size:16 final size:17
Alignment explanation
Indices: 52871--52903 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
52861 ATAAAAACAG
*
52871 TTCTTTTTCATT-TTAA
1 TTCTTTTCCATTATTAA
52887 TTCTTTTCCATTATTAA
1 TTCTTTTCCATTATTAA
52904 ACTTTTGCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.21, C:0.15, G:0.00, T:0.64
Consensus pattern (17 bp):
TTCTTTTCCATTATTAA
Found at i:58918 original size:16 final size:17
Alignment explanation
Indices: 58897--58929 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
58887 ATAAAAACAG
*
58897 TTCTTTTTCATT-TTAA
1 TTCTTTTCCATTATTAA
58913 TTCTTTTCCATTATTAA
1 TTCTTTTCCATTATTAA
58930 ACTTTTGCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.21, C:0.15, G:0.00, T:0.64
Consensus pattern (17 bp):
TTCTTTTCCATTATTAA
Found at i:64944 original size:16 final size:17
Alignment explanation
Indices: 64923--64955 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
64913 ATAAAAACAG
*
64923 TTCTTTTTCATT-TTAA
1 TTCTTTTCCATTATTAA
64939 TTCTTTTCCATTATTAA
1 TTCTTTTCCATTATTAA
64956 ACTTTTGCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.21, C:0.15, G:0.00, T:0.64
Consensus pattern (17 bp):
TTCTTTTCCATTATTAA
Found at i:70968 original size:16 final size:17
Alignment explanation
Indices: 70947--70979 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
70937 ATAAAAACAG
*
70947 TTCTTTTTCATT-TTAA
1 TTCTTTTCCATTATTAA
70963 TTCTTTTCCATTATTAA
1 TTCTTTTCCATTATTAA
70980 ACTTTTGCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.21, C:0.15, G:0.00, T:0.64
Consensus pattern (17 bp):
TTCTTTTCCATTATTAA
Found at i:75549 original size:112 final size:111
Alignment explanation
Indices: 75278--75747 Score: 764
Period size: 112 Copynumber: 4.2 Consensus size: 111
75268 GTGGCCTTTG
* *
75278 GGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCGCAAAT
1 GGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGCGGCGTTTATAAATAACGCCGCAAAT
75343 AATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGACTTAGT
66 AATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGACTTAGT
*
75389 GGCATTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGCGGCGTTTATAAATAACGCCGCAAAT
1 GGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGCGGCGTTTATAAATAACGCCGCAAAT
75454 AATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGACTTAGT
66 AATACACCCAGACGGTGCCGTTTTGTGGCCTTT-GGGGGGACTTAGT
** * *
75501 GGCGTTTATTGCGAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCGCAAAT
1 GGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGCGGCGTTTATAAATAACGCCGCAAAT
75566 AATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGACTTAGT
66 AATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGACTTAGT
* * * * *
75612 GGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAACATTAGCAGCGCTTATAAAAAAATGCCGCAAA
1 GGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGCGGCGTTTAT-AAATAACGCCGCAAA
* *
75677 TAATACTCCCAGACGGTGCCGTTTTGTGTCCTTTGGGGGG-CATTAGT
65 TAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGAC-TTAGT
*
75724 GGCGTTTTTTGTAAAGC-CCGCTAA
1 GGCGTTTATTGTAAAGCGCCGCTAA
75748 TCTAGGTGTT
Statistics
Matches: 336, Mismatches: 20, Indels: 6
0.93 0.06 0.02
Matches are distributed among these distances:
111 159 0.47
112 177 0.53
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.27
Consensus pattern (111 bp):
GGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGCGGCGTTTATAAATAACGCCGCAAAT
AATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGACTTAGT
Found at i:75725 original size:223 final size:223
Alignment explanation
Indices: 75278--75747 Score: 809
Period size: 223 Copynumber: 2.1 Consensus size: 223
75268 GTGGCCTTTG
75278 GGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCGCAAAT
1 GGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCGCAAAT
75343 AATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGACTTAGTGGCATTTATTGTAAAGCGC
66 AATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGACTTAGTGGCATTTATTGTAAAGCGC
* * * *
75408 CGCTAAAGAGTGAGCATTAGCGGCGTTTATAAATAACGCCGCAAATAATACACCCAGACGGTGCC
131 CGCTAAAGAGTGAACATTAGCAGCGCTTATAAAAAACGCCGCAAATAATACACCCAGACGGTGCC
*
75473 GTTTTGTGGCCTTTGGGGGGGACTTAGT
196 GTTTTGTGGCCTTTGGGGGGCACTTAGT
**
75501 GGCGTTTATTGCGAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCGCAAAT
1 GGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCGCAAAT
*
75566 AATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGACTTAGTGGCGTTTATTGTAAAGCGC
66 AATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGACTTAGTGGCATTTATTGTAAAGCGC
* *
75631 CGCTAAAGAGTGAACATTAGCAGCGCTTATAAAAAAATGCCGCAAATAATACTCCCAGACGGTGC
131 CGCTAAAGAGTGAACATTAGCAGCGCTTAT-AAAAAACGCCGCAAATAATACACCCAGACGGTGC
*
75696 CGTTTTGTGTCCTTTGGGGGGCA-TTAGT
195 CGTTTTGTGGCCTTTGGGGGGCACTTAGT
*
75724 GGCGTTTTTTGTAAAGC-CCGCTAA
1 GGCGTTTATTGTAAAGCGCCGCTAA
75748 TCTAGGTGTT
Statistics
Matches: 232, Mismatches: 14, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
222 7 0.03
223 173 0.75
224 52 0.22
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.27
Consensus pattern (223 bp):
GGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCGCAAAT
AATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGACTTAGTGGCATTTATTGTAAAGCGC
CGCTAAAGAGTGAACATTAGCAGCGCTTATAAAAAACGCCGCAAATAATACACCCAGACGGTGCC
GTTTTGTGGCCTTTGGGGGGCACTTAGT
Found at i:76374 original size:12 final size:12
Alignment explanation
Indices: 76357--76382 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
76347 ATATATAACT
76357 GTAAAAGAGGTC
1 GTAAAAGAGGTC
76369 GTAAAAGAGGTC
1 GTAAAAGAGGTC
76381 GT
1 GT
76383 GCTATTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.08, G:0.35, T:0.19
Consensus pattern (12 bp):
GTAAAAGAGGTC
Found at i:76857 original size:84 final size:83
Alignment explanation
Indices: 76768--76968 Score: 321
Period size: 84 Copynumber: 2.4 Consensus size: 83
76758 TAGTTAAACT
* *
76768 TTTAGTGGCGTTTTTAAGAAAATGCCACAAATAATGCAATTCCAGACCACGAAAACGGTGTCGTT
1 TTTAGTGGCGTTTTTAA-AAAACGCCACAAAAAATGCAATTCCAGACCACGAAAACGGTGTCGTT
76833 TCTGTTCACAGCTGTAATA
65 TCTGTTCACAGCTGTAATA
* *
76852 TTTAGTGGCGTTTTTCTAAAAACGCCACAAAAAATGCAATTCCAGACCACGAAAACGGTGTTGTT
1 TTTAGTGGCGTTTTT-AAAAAACGCCACAAAAAATGCAATTCCAGACCACGAAAACGGTGTCGTT
*
76917 TCTGTTCACAGTTGTAATA
65 TCTGTTCACAGCTGTAATA
76936 TTTAGTGGCGTTTTTACCAAAAACGCCACAAAA
1 TTTAGTGGCGTTTTTA--AAAAACGCCACAAAA
76969 CGGTGTTAAT
Statistics
Matches: 108, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
84 92 0.85
85 16 0.15
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (83 bp):
TTTAGTGGCGTTTTTAAAAAACGCCACAAAAAATGCAATTCCAGACCACGAAAACGGTGTCGTTT
CTGTTCACAGCTGTAATA
Found at i:77987 original size:11 final size:11
Alignment explanation
Indices: 77950--77989 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
77940 GAATATCTCA
77950 AACT-ATGGGT
1 AACTAATGGGT
*
77960 AACTAGTGGGT
1 AACTAATGGGT
77971 AACTAATGGGT
1 AACTAATGGGT
77982 AACTAATG
1 AACTAATG
77990 TATTATCATC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
10 4 0.15
11 23 0.85
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.28
Consensus pattern (11 bp):
AACTAATGGGT
Found at i:79353 original size:16 final size:16
Alignment explanation
Indices: 79322--79362 Score: 64
Period size: 16 Copynumber: 2.5 Consensus size: 16
79312 TTAAATTTTA
*
79322 TTACTAAAATACATTAC
1 TTACT-AAATAAATTAC
79339 TTACTAAATAAATTAC
1 TTACTAAATAAATTAC
79355 TTACTAAA
1 TTACTAAA
79363 ATTTGTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 18 0.78
17 5 0.22
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.37
Consensus pattern (16 bp):
TTACTAAATAAATTAC
Found at i:79402 original size:14 final size:14
Alignment explanation
Indices: 79378--79412 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
79368 TTTTAAATTT
79378 ATTAC-TAAAATAC
1 ATTACTTAAAATAC
79391 ATTACTTAAAATAC
1 ATTACTTAAAATAC
79405 ATTACTTA
1 ATTACTTA
79413 CTAAAATTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.24
14 16 0.76
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (14 bp):
ATTACTTAAAATAC
Found at i:79435 original size:27 final size:27
Alignment explanation
Indices: 79350--79437 Score: 81
Period size: 27 Copynumber: 3.2 Consensus size: 27
79340 TACTAAATAA
79350 ATTACTTACTAAAATTTGTTTTAAATTT
1 ATTACTTACTAAAATTTG-TTTAAATTT
* ** * **
79378 ATTAC-TA-AAATACATTACTTAAAATAC
1 ATTACTTACTAA-A-ATTTGTTTAAATTT
79405 ATTACTTACTAAAATTTGTTTAAATTT
1 ATTACTTACTAAAATTTGTTTAAATTT
79432 ATTACT
1 ATTACT
79438 AAAATACATT
Statistics
Matches: 44, Mismatches: 12, Indels: 9
0.68 0.18 0.14
Matches are distributed among these distances:
26 2 0.05
27 29 0.66
28 11 0.25
29 2 0.05
ACGTcount: A:0.41, C:0.10, G:0.02, T:0.47
Consensus pattern (27 bp):
ATTACTTACTAAAATTTGTTTAAATTT
Found at i:79448 original size:54 final size:56
Alignment explanation
Indices: 79312--79448 Score: 233
Period size: 54 Copynumber: 2.4 Consensus size: 56
79302 CGATTGAATG
79312 TTAAATTTTATTACTAAAATACATTACTTACTAAATAAATTACTTACTAAAATTTGTT
1 TTAAA-TTTATTACTAAAATACATTACTTAC-AAATAAATTACTTACTAAAATTTGTT
*
79370 TTAAATTTATTACTAAAATACATTACTTA-AAATACATTACTTACTAAAATTTG-T
1 TTAAATTTATTACTAAAATACATTACTTACAAATAAATTACTTACTAAAATTTGTT
79424 TTAAATTTATTACTAAAATACATTA
1 TTAAATTTATTACTAAAATACATTA
79449 TACTAAAATT
Statistics
Matches: 78, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
54 26 0.33
55 23 0.29
57 24 0.31
58 5 0.06
ACGTcount: A:0.45, C:0.10, G:0.01, T:0.44
Consensus pattern (56 bp):
TTAAATTTATTACTAAAATACATTACTTACAAATAAATTACTTACTAAAATTTGTT
Found at i:79456 original size:55 final size:56
Alignment explanation
Indices: 79312--79457 Score: 219
Period size: 55 Copynumber: 2.6 Consensus size: 56
79302 CGATTGAATG
79312 TTAAATTTTATTACTAAAATACATTACTTACT-AAATAAATTACTTACTAAAATTTGTT
1 TTAAA-TTTATTACTAAAATACATTA--TACTAAAATAAATTACTTACTAAAATTTGTT
*
79370 TTAAATTTATTACTAAAATACA-T-TACTTAAAATACATTACTTACTAAAATTTG-T
1 TTAAATTTATTACTAAAATACATTATAC-TAAAATAAATTACTTACTAAAATTTGTT
79424 TTAAATTTATTACTAAAATACATTATACTAAAAT
1 TTAAATTTATTACTAAAATACATTATACTAAAAT
79458 TTGTTTAAAT
Statistics
Matches: 83, Mismatches: 1, Indels: 11
0.87 0.01 0.12
Matches are distributed among these distances:
53 3 0.04
54 24 0.29
55 30 0.36
56 4 0.05
57 17 0.20
58 5 0.06
ACGTcount: A:0.45, C:0.10, G:0.01, T:0.43
Consensus pattern (56 bp):
TTAAATTTATTACTAAAATACATTATACTAAAATAAATTACTTACTAAAATTTGTT
Found at i:79460 original size:38 final size:39
Alignment explanation
Indices: 79391--79481 Score: 148
Period size: 38 Copynumber: 2.3 Consensus size: 39
79381 ACTAAAATAC
79391 ATTACTTAAAATACATTACTTACTAAAATTTGTTTAAATTT
1 ATTAC-TAAAATACATTAC-TACTAAAATTTGTTTAAATTT
79432 ATTACTAAAATACATTA-TACTAAAATTTGTTTAAATTT
1 ATTACTAAAATACATTACTACTAAAATTTGTTTAAATTT
*
79470 ATTACTTAAATA
1 ATTACTAAAATA
79482 TGTACTTAAA
Statistics
Matches: 49, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
38 32 0.65
40 12 0.24
41 5 0.10
ACGTcount: A:0.44, C:0.09, G:0.02, T:0.45
Consensus pattern (39 bp):
ATTACTAAAATACATTACTACTAAAATTTGTTTAAATTT
Found at i:79473 original size:25 final size:24
Alignment explanation
Indices: 79449--79552 Score: 135
Period size: 25 Copynumber: 4.4 Consensus size: 24
79439 AAATACATTA
* *
79449 TACTAAAATTTGT-TTAAATTTAT
1 TACTTAAATATGTATTAAATTTAT
79472 TACTTAAATATGTACTTAAATTTAT
1 TACTTAAATATGTA-TTAAATTTAT
79497 TACTTAAATATGTACTTAAATTTAT
1 TACTTAAATATGTA-TTAAATTTAT
*
79522 TACTTAAATA-ATA-T-AATTTAT
1 TACTTAAATATGTATTAAATTTAT
79543 TACTTAAATA
1 TACTTAAATA
79553 CATTATTATG
Statistics
Matches: 76, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
21 17 0.22
22 1 0.01
23 11 0.14
24 2 0.03
25 45 0.59
ACGTcount: A:0.42, C:0.07, G:0.03, T:0.48
Consensus pattern (24 bp):
TACTTAAATATGTATTAAATTTAT
Found at i:79480 original size:13 final size:13
Alignment explanation
Indices: 79462--79530 Score: 92
Period size: 13 Copynumber: 5.5 Consensus size: 13
79452 TAAAATTTGT
79462 TTAAATTTATTAC
1 TTAAATTTATTAC
79475 TTAAA--TATGTAC
1 TTAAATTTAT-TAC
79487 TTAAATTTATTAC
1 TTAAATTTATTAC
79500 TTAAA--TATGTAC
1 TTAAATTTAT-TAC
79512 TTAAATTTATTAC
1 TTAAATTTATTAC
79525 TTAAAT
1 TTAAAT
79531 AATATAATTT
Statistics
Matches: 50, Mismatches: 0, Indels: 12
0.81 0.00 0.19
Matches are distributed among these distances:
11 6 0.12
12 16 0.32
13 22 0.44
14 6 0.12
ACGTcount: A:0.41, C:0.07, G:0.03, T:0.49
Consensus pattern (13 bp):
TTAAATTTATTAC
Found at i:79489 original size:12 final size:11
Alignment explanation
Indices: 79469--79552 Score: 73
Period size: 12 Copynumber: 7.2 Consensus size: 11
79459 TGTTTAAATT
79469 TATTACTTAAA
1 TATTACTTAAA
79480 TATGTACTTAAA
1 TAT-TACTTAAA
79492 TTTATTACTTAAA
1 --TATTACTTAAA
79505 TATGTACTTAAA
1 TAT-TACTTAAA
79517 TTTATTACTTAAA
1 --TATTACTTAAA
* *
79530 TAATA--TAATT
1 TATTACTTAA-A
79540 TATTACTTAAA
1 TATTACTTAAA
79551 TA
1 TA
79553 CATTATTATG
Statistics
Matches: 60, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
9 3 0.05
10 4 0.07
11 12 0.20
12 19 0.32
13 16 0.27
14 6 0.10
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (11 bp):
TATTACTTAAA
Found at i:81006 original size:1 final size:1
Alignment explanation
Indices: 80997--81130 Score: 133
Period size: 1 Copynumber: 134.0 Consensus size: 1
80987 CCCCCCACAT
* * * * * * * *
80997 CCCCACCCCCCCCACCCTCACCCCCCACCCCCCCCCCCCCCCCCCACACCCCCCCCCCGCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * * * * * *
81062 CACACCCCCACCTCCCCCCACCACCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
81127 CCCC
1 CCCC
81131 GACTTCATGA
Statistics
Matches: 103, Mismatches: 30, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 103 1.00
ACGTcount: A:0.08, C:0.89, G:0.01, T:0.02
Consensus pattern (1 bp):
C
Found at i:81007 original size:15 final size:15
Alignment explanation
Indices: 80987--81083 Score: 62
Period size: 15 Copynumber: 6.7 Consensus size: 15
80977 TAAGTCGCTC
80987 CCCCCCACATCCC-CA
1 CCCCCCACA-CCCTCA
*
81002 CCCCCCCCACCCTCA
1 CCCCCCACACCCTCA
*
81017 CCCCCCAC-CCC-CC
1 CCCCCCACACCCTCA
* * *
81030 CCCCCCCCCCCCACA
1 CCCCCCACACCCTCA
*
81045 CCCCCC-C-CCCGC-
1 CCCCCCACACCCTCA
*
81057 CCCCCCACACCCCCA
1 CCCCCCACACCCTCA
*
81072 CCTCCCCCCACC
1 CC-CCCCACACC
81084 ACCCCCCCCC
Statistics
Matches: 67, Mismatches: 8, Indels: 13
0.76 0.09 0.15
Matches are distributed among these distances:
12 6 0.09
13 13 0.19
14 14 0.21
15 26 0.39
16 8 0.12
ACGTcount: A:0.12, C:0.84, G:0.01, T:0.03
Consensus pattern (15 bp):
CCCCCCACACCCTCA
Found at i:81027 original size:21 final size:20
Alignment explanation
Indices: 80997--81130 Score: 152
Period size: 20 Copynumber: 6.7 Consensus size: 20
80987 CCCCCCACAT
*
80997 CCCCACCCCCCCCACCCTCACC
1 CCCCA-CCCCCCC-CCCTCCCC
81019 CCCCACCCCCCCCCC-CCCC
1 CCCCACCCCCCCCCCTCCCC
81038 CCCCACACCCCCCCCC-CGCCC
1 CCCCAC-CCCCCCCCCTC-CCC
* *
81059 CCCCACACCCCCACCTCCCC
1 CCCCACCCCCCCCCCTCCCC
81079 CCACCACCCCCCCCCCCTCCCC
1 CC-CCA-CCCCCCCCCCTCCCC
81101 CCCC-CCCCCCCCCC-CCCC
1 CCCCACCCCCCCCCCTCCCC
81119 CCCC-CCCCCCCC
1 CCCCACCCCCCCC
81131 GACTTCATGA
Statistics
Matches: 102, Mismatches: 5, Indels: 14
0.84 0.04 0.12
Matches are distributed among these distances:
18 16 0.16
19 19 0.19
20 25 0.25
21 22 0.22
22 20 0.20
ACGTcount: A:0.08, C:0.89, G:0.01, T:0.02
Consensus pattern (20 bp):
CCCCACCCCCCCCCCTCCCC
Found at i:81101 original size:70 final size:68
Alignment explanation
Indices: 80986--81130 Score: 206
Period size: 70 Copynumber: 2.1 Consensus size: 68
80976 TTAAGTCGCT
*
80986 CCCCCCCACATCCCCACCCCCCCCACCCTCACCCCCCACCCCCCCCCCCCCCCCCCACACCCCCC
1 CCCCCCCACACCCCCACCCCCCCCACCCTCACCCCCCACCCCCCCCCCCCCCCCCC-C-CCCCCC
*
81051 CCCCG
64 CCCCC
81056 CCCCCCCACACCCCCACCTCCCCCCACCAC-C-CCCCCC-CCCTCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCACACCCCCACC-CCCCCCACC-CTCACCCCCCACCC-CCCCCCCCCCCCCCCCCCCCC
81118 CCCCCC
63 CCCCCC
81124 CCCCCCC
1 CCCCCCC
81131 GACTTCATGA
Statistics
Matches: 70, Mismatches: 2, Indels: 8
0.88 0.03 0.10
Matches are distributed among these distances:
68 17 0.24
69 4 0.06
70 38 0.54
71 10 0.14
72 1 0.01
ACGTcount: A:0.09, C:0.88, G:0.01, T:0.03
Consensus pattern (68 bp):
CCCCCCCACACCCCCACCCCCCCCACCCTCACCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCC
CCC
Found at i:85511 original size:13 final size:12
Alignment explanation
Indices: 85493--85550 Score: 62
Period size: 13 Copynumber: 4.5 Consensus size: 12
85483 GTATTTTATG
85493 TTTATTATTTTAA
1 TTTATTATTTT-A
85506 TTTATTATTCTTA
1 TTTATTATT-TTA
85519 TTTATTATTTTAA
1 TTTATTATTTT-A
* *
85532 TATTTTTATATTA
1 T-TTATTATTTTA
85545 TTTATT
1 TTTATT
85551 TTAATTTTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
12 6 0.15
13 23 0.59
14 10 0.26
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.71
Consensus pattern (12 bp):
TTTATTATTTTA
Found at i:85522 original size:26 final size:26
Alignment explanation
Indices: 85493--85550 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
85483 GTATTTTATG
*
85493 TTTATTATTTTAAT-TTATTATTCTTA
1 TTTATTATTTTAATATTATTA-TATTA
*
85519 TTTATTATTTTAATATTTTTATATTA
1 TTTATTATTTTAATATTATTATATTA
85545 TTTATT
1 TTTATT
85551 TTAATTTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 24 0.83
27 5 0.17
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.71
Consensus pattern (26 bp):
TTTATTATTTTAATATTATTATATTA
Found at i:85543 original size:29 final size:29
Alignment explanation
Indices: 85493--85570 Score: 76
Period size: 29 Copynumber: 2.8 Consensus size: 29
85483 GTATTTTATG
*
85493 TTTATTATTTTA-ATTTAT-TATT-CTTA
1 TTTATTATTTTATATTTTTATATTACTTA
*
85519 TTTATTATTTTAATATTTTTATATTATTTA
1 TTTATTATTTT-ATATTTTTATATTACTTA
85549 TTTTAATT-TTTT-TATTTTTATA
1 -TTT-ATTATTTTATATTTTTATA
85571 AAATATTTAT
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
26 11 0.25
27 1 0.02
28 5 0.11
29 14 0.32
30 3 0.07
31 7 0.16
32 3 0.07
ACGTcount: A:0.27, C:0.01, G:0.00, T:0.72
Consensus pattern (29 bp):
TTTATTATTTTATATTTTTATATTACTTA
Found at i:85550 original size:15 final size:15
Alignment explanation
Indices: 85532--85570 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
85522 ATTATTTTAA
85532 TATTTTTATATTATT
1 TATTTTTATATTATT
* *
85547 TATTTTAAT-TTTTT
1 TATTTTTATATTATT
85561 TATTTTTATA
1 TATTTTTATA
85571 AAATATTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (15 bp):
TATTTTTATATTATT
Found at i:85665 original size:78 final size:76
Alignment explanation
Indices: 85574--85757 Score: 171
Period size: 78 Copynumber: 2.4 Consensus size: 76
85564 TTTTATAAAA
85574 TATTTATATTATATTTATTTTTTATTATTATAATAAATTAT-TATTAATATTTAT-TAAAATATA
1 TATTT-TA-TATATTTATTTTTTATTATT-TAAT-AATTATATATTAATATTTATATAAAATATA
*
85637 ATATATTTTT-ATTT
62 ATATATTTTTAAATT
* ** ****
85651 TATTATTAAATATATTAATTTTATT-TTATTTAATTTTTATAATATTAATATTTATATTTTTTAT
1 TATT-TT--ATATATTTATTTT-TTATTATTTAATAATTAT-ATATTAATATTTATATAAAATAT
85715 AATATATTTTTAAATT
61 AATATATTTTTAAATT
*
85731 TATTTTAT-TATATATTTTTTATTATTT
1 TATTTTATATATTTATTTTTTATTATTT
85758 TTTATTTTTT
Statistics
Matches: 88, Mismatches: 10, Indels: 19
0.75 0.09 0.16
Matches are distributed among these distances:
75 2 0.02
76 18 0.20
77 11 0.12
78 30 0.34
79 20 0.23
80 7 0.08
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (76 bp):
TATTTTATATATTTATTTTTTATTATTTAATAATTATATATTAATATTTATATAAAATATAATAT
ATTTTTAAATT
Found at i:85676 original size:26 final size:26
Alignment explanation
Indices: 85578--85680 Score: 86
Period size: 26 Copynumber: 3.8 Consensus size: 26
85568 ATAAAATATT
*
85578 TATATTATATTTATTTTTTATTATTATAA
1 TATATTA-ATTT-TATTTTATTATTA-AA
*
85607 TAAATT-ATTATTAATATTTATTA--AAA
1 TATATTAATT-TT-AT-TTTATTATTAAA
*
85633 TATAATATATTTTTATTTTATTATTAAA
1 TAT-AT-TAATTTTATTTTATTATTAAA
85661 TATATTAATTTTATTTTATT
1 TATATTAATTTTATTTTATT
85681 TAATTTTTAT
Statistics
Matches: 61, Mismatches: 5, Indels: 19
0.72 0.06 0.22
Matches are distributed among these distances:
26 25 0.41
27 11 0.18
28 11 0.18
29 14 0.23
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (26 bp):
TATATTAATTTTATTTTATTATTAAA
Found at i:85719 original size:12 final size:12
Alignment explanation
Indices: 85704--85762 Score: 54
Period size: 10 Copynumber: 4.9 Consensus size: 12
85694 ATTAATATTT
85704 ATATTTTTTATA
1 ATATTTTTTATA
85716 ATATATTTTTA-A
1 ATAT-TTTTTATA
85728 AT-TTATTTTATTA
1 ATATT-TTTTA-TA
85741 TATATTTTTTAT-
1 -ATATTTTTTATA
85753 -TATTTTTTAT
1 ATATTTTTTAT
85763 TTTTTTTTAA
Statistics
Matches: 41, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
10 11 0.27
11 6 0.15
12 7 0.17
13 8 0.20
14 7 0.17
15 2 0.05
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
ATATTTTTTATA
Found at i:85726 original size:22 final size:22
Alignment explanation
Indices: 85684--85762 Score: 77
Period size: 24 Copynumber: 3.3 Consensus size: 22
85674 TTTTATTTAA
*
85684 TTTTTATAATATTAATATTTATAT
1 TTTTTATAATA-T-ATTTTTATAT
*
85708 TTTTTATAATATATTTTTAAATT
1 TTTTTATAATATATTTTTATA-T
*
85731 TATTTTATTATATATTTTTTATTAT
1 T-TTTTATAATATA-TTTTTA-TAT
85756 TTTTTAT
1 TTTTTAT
85763 TTTTTTTTAA
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
22 7 0.15
23 3 0.06
24 28 0.60
25 8 0.17
26 1 0.02
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (22 bp):
TTTTTATAATATATTTTTATAT
Found at i:85751 original size:19 final size:18
Alignment explanation
Indices: 85669--85787 Score: 59
Period size: 19 Copynumber: 6.3 Consensus size: 18
85659 AATATATTAA
85669 TTTTATTTTATTTA-ATT
1 TTTTATTTTATTTATATT
85686 TTTATAATATTAATATTTATATT
1 TTT-T-AT-TT--TATTTATATT
* * *
85709 TTTTATAATATATTTTTA-A
1 TTTTAT--TTTATTTATATT
*
85728 ATTTATTTTATTATATATT
1 TTTTATTTTATT-TATATT
85747 TTTTATTATT-TTT-TATT
1 TTTTATT-TTATTTATATT
*
85764 TTTT-TTTAATTTTATAATT
1 TTTTATTTTA-TTTAT-ATT
85783 TTTTA
1 TTTTA
85788 ATTAATATTT
Statistics
Matches: 78, Mismatches: 9, Indels: 27
0.68 0.08 0.24
Matches are distributed among these distances:
15 1 0.01
16 2 0.03
17 19 0.24
18 6 0.08
19 22 0.28
20 11 0.14
21 2 0.03
22 9 0.12
23 6 0.08
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTATTTTATTTATATT
Found at i:85753 original size:14 final size:14
Alignment explanation
Indices: 85699--85755 Score: 54
Period size: 14 Copynumber: 4.4 Consensus size: 14
85689 ATAATATTAA
85699 TATT-TATATTTTT
1 TATTATATATTTTT
*
85712 TATAATATA-TTTT
1 TATTATATATTTTT
85725 TA--A-AT-TTATTT
1 TATTATATATT-TTT
85736 TATTATATATTTTT
1 TATTATATATTTTT
85750 TATTAT
1 TATTAT
85756 TTTTTATTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 13
0.72 0.02 0.26
Matches are distributed among these distances:
10 3 0.08
11 6 0.17
13 10 0.28
14 15 0.42
15 2 0.06
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TATTATATATTTTT
Found at i:85776 original size:16 final size:16
Alignment explanation
Indices: 85743--85790 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
85733 TTTTATTATA
* *
85743 TATTTTTTATTATTTTT
1 TATTTTTTTTTA-ATTT
85760 TATTTTTTTTTAATTT
1 TATTTTTTTTTAATTT
**
85776 TATAATTTTTTAATT
1 TATTTTTTTTTAATT
85791 AATATTTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
16 16 0.59
17 11 0.41
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (16 bp):
TATTTTTTTTTAATTT
Found at i:85881 original size:12 final size:12
Alignment explanation
Indices: 85866--85928 Score: 51
Period size: 12 Copynumber: 5.5 Consensus size: 12
85856 TTTATAATAT
85866 TATAATTAATTA
1 TATAATTAATTA
*
85878 TATAATTAATTT
1 TATAATTAATTA
*
85890 TAT-A-TAATTT
1 TATAATTAATTA
* *
85900 TATATTTATTTA
1 TATAATTAATTA
* *
85912 TATTATTTATTA
1 TATAATTAATTA
85924 -ATAAT
1 TATAAT
85929 ATATTATTAT
Statistics
Matches: 40, Mismatches: 9, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
10 9 0.22
11 5 0.12
12 26 0.65
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
TATAATTAATTA
Found at i:85908 original size:16 final size:14
Alignment explanation
Indices: 85866--85898 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
85856 TTTATAATAT
85866 TATAATTAA--TTA
1 TATAATTAATTTTA
85878 TATAATTAATTTTA
1 TATAATTAATTTTA
85892 TATAATT
1 TATAATT
85899 TTATATTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 9 0.47
14 10 0.53
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TATAATTAATTTTA
Found at i:85938 original size:26 final size:25
Alignment explanation
Indices: 85900--85979 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 25
85890 TATATAATTT
85900 TATATTTATTTATATTATTTATTAATAA
1 TATA-TTA-TTATATTATTTATT-ATAA
* * * *
85928 TATATTATTATTTTTTTTATTTTTA
1 TATATTATTATATTATTTATTATAA
*
85953 -AT-TTATTATATTATAT-TTATAA
1 TATATTATTATATTATTTATTATAA
85975 TATAT
1 TATAT
85980 CTTTTTTTTT
Statistics
Matches: 41, Mismatches: 9, Indels: 8
0.71 0.16 0.14
Matches are distributed among these distances:
22 4 0.10
23 13 0.32
24 3 0.07
25 2 0.05
26 12 0.29
27 3 0.07
28 4 0.10
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (25 bp):
TATATTATTATATTATTTATTATAA
Found at i:85989 original size:44 final size:50
Alignment explanation
Indices: 85851--85979 Score: 126
Period size: 49 Copynumber: 2.7 Consensus size: 50
85841 TATTATTAAA
* * * * * *
85851 TTATATTTA-TAATATTATAATTAATTATATAATTA--ATTTTATATAATT
1 TTATATTTATTTATATTATTATTAATAATAT-ATTACTATTTTTTTTATTT
*
85899 TTATATTTATTTATATTATTTATTAATAATATATTATTATTTTTTTTATTT
1 TTATATTTATTTATATTA-TTATTAATAATATATTACTATTTTTTTTATTT
*
85950 TTA-ATTTA-TTATATTA-TATTTATAATATAT
1 TTATATTTATTTATATTATTATTAATAATATAT
85980 CTTTTTTTTT
Statistics
Matches: 70, Mismatches: 7, Indels: 9
0.81 0.08 0.10
Matches are distributed among these distances:
47 13 0.19
48 9 0.13
49 19 0.27
50 16 0.23
51 13 0.19
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (50 bp):
TTATATTTATTTATATTATTATTAATAATATATTACTATTTTTTTTATTT
Found at i:85992 original size:47 final size:50
Alignment explanation
Indices: 85851--86071 Score: 147
Period size: 52 Copynumber: 4.5 Consensus size: 50
85841 TATTATTAAA
* * * * * *
85851 TTATATTTA-TAATATTATAATTAAT--TATATAATTAATTTTATATAATT
1 TTATATTTATTTATATTATTATTAATAATATATTATT-ATTTTTTTTATTT
85899 TTATATTTATTTATATTATTTATTAATAATATATTATTATTTTTTTTATTT
1 TTATATTTATTTATATTA-TTATTAATAATATATTATTATTTTTTTTATTT
* * **
85950 TTA-ATTTA-TTATATTA-TATTTATAATATATCT-TTTTTTTTTTTATAAA
1 TTATATTTATTTATATTATTATTAATAATATAT-TATTATTTTTTTTAT-TT
* * * * *
85998 TTA-ATTTATTTTTTTTTATTTTTATATTATATATTATTATTATTTTATT-TAT
1 TTATATTTA-TTTATATTATTATTA-ATAATATATTATTATT-TTTT-TTATTT
* *
86050 TTATTTTTATTT-TTTTATTATT
1 TTATATTTATTTATATTATTATT
86072 TTTATTTTTT
Statistics
Matches: 140, Mismatches: 19, Indels: 25
0.76 0.10 0.14
Matches are distributed among these distances:
47 25 0.18
48 18 0.13
49 15 0.11
50 18 0.13
51 26 0.19
52 27 0.19
53 9 0.06
54 2 0.01
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.67
Consensus pattern (50 bp):
TTATATTTATTTATATTATTATTAATAATATATTATTATTTTTTTTATTT
Found at i:86019 original size:5 final size:5
Alignment explanation
Indices: 85886--86079 Score: 58
Period size: 5 Copynumber: 37.0 Consensus size: 5
85876 TATATAATTA
* * * * * *
85886 ATTTT ATATA ATTTT ATATTT A-TTT ATATT A-TTT ATTAAT AATAT ATTATT
1 ATTTT ATTTT ATTTT AT-TTT ATTTT ATTTT ATTTT ATT-TT ATTTT ATT-TT
* * * * *
85937 ATTTT -TTTT ATTTTT AATTT ATTAT ATTAT ATTTAT AATAT ATCTTT
1 ATTTT ATTTT A-TTTT ATTTT ATTTT ATTTT ATTT-T ATTTT AT-TTT
* * * * *
85984 -TTTT TTTTT ATAAATT AATTT ATTTT TTTTT ATTTTT ATATTAT ATATT
1 ATTTT ATTTT AT--TTT ATTTT ATTTT ATTTT A-TTTT AT-TT-T ATTTT
*
86033 ATTATT ATTTT A-TTT A-TTT ATTTTT ATTTT TTTATT ATTTTT ATTTT
1 ATT-TT ATTTT ATTTT ATTTT A-TTTT ATTTT ATT-TT A-TTTT ATTTT
86080 TTTCTATTAT
Statistics
Matches: 140, Mismatches: 29, Indels: 40
0.67 0.14 0.19
Matches are distributed among these distances:
4 22 0.16
5 67 0.48
6 43 0.31
7 8 0.06
ACGTcount: A:0.29, C:0.01, G:0.00, T:0.71
Consensus pattern (5 bp):
ATTTT
Found at i:86020 original size:33 final size:33
Alignment explanation
Indices: 85887--86057 Score: 88
Period size: 33 Copynumber: 5.1 Consensus size: 33
85877 ATATAATTAA
*
85887 TTTTATATAATT-TTA-TA-TTTATTTATATTATT
1 TTTTATA-AATTATTATTATTTTATTTAT-TTTTT
* * *
85919 TATTA-ATAATATATTATTATTTTTTTTATTTTTA
1 TTTTATA-AAT-TATTATTATTTTATTTATTTTTT
* * *
85953 ATTTATTATATTA-TATTTATAATATATCTT-TTTTTT
1 TTTTA-TAAATTATTA-TTAT--TTTAT-TTATTTTTT
*
85989 TTTTATAAATTAATTTATT-TTTT-TTTATTTTTA
1 TTTTATAAATT-A-TTATTATTTTATTTATTTTTT
* * *
86022 TATTATATATTATTATTATTTTATTTATTTATT
1 TTTTATAAATTATTATTATTTTATTTATTTTTT
86055 TTT
1 TTT
86058 ATTTTTTTAT
Statistics
Matches: 104, Mismatches: 19, Indels: 31
0.68 0.12 0.20
Matches are distributed among these distances:
31 10 0.10
32 12 0.12
33 30 0.29
34 16 0.15
35 15 0.14
36 15 0.14
37 4 0.04
38 2 0.02
ACGTcount: A:0.30, C:0.01, G:0.00, T:0.70
Consensus pattern (33 bp):
TTTTATAAATTATTATTATTTTATTTATTTTTT
Found at i:86021 original size:6 final size:6
Alignment explanation
Indices: 86002--86080 Score: 60
Period size: 6 Copynumber: 13.5 Consensus size: 6
85992 TATAAATTAA
* * *
86002 TTTA-T TTT-TT TTTATT TTTA-T ATTATAT ATTATT ATTA-T TTTATTT
1 TTTATT TTTATT TTTATT TTTATT TTTAT-T TTTATT TTTATT TTTA-TT
*
86048 ATTTATT TTTATT TTT-TT ATTATT TTTATT TTT
1 -TTTATT TTTATT TTTATT TTTATT TTTATT TTT
86081 TTCTATTATA
Statistics
Matches: 62, Mismatches: 4, Indels: 15
0.77 0.05 0.19
Matches are distributed among these distances:
5 19 0.31
6 30 0.48
7 9 0.15
8 4 0.06
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTATT
Found at i:86025 original size:8 final size:8
Alignment explanation
Indices: 86002--86100 Score: 55
Period size: 8 Copynumber: 12.8 Consensus size: 8
85992 TATAAATTAA
*
86002 TTTATTTT
1 TTTATATT
*
86010 TTTTTATT
1 TTTATATT
86018 TTTATA-T
1 TTTATATT
*
86025 TATATATT
1 TTTATATT
*
86033 ATTAT-TAT
1 TTTATAT-T
86041 TTTAT-TT
1 TTTATATT
*
86048 ATT-TATT
1 TTTATATT
*
86055 TTTATTTT
1 TTTATATT
86063 TTTATTATT
1 TTTA-TATT
*
86072 TTTATTTT
1 TTTATATT
*
86080 TTTCTA-T
1 TTTATATT
* *
86087 TATATAAT
1 TTTATATT
86095 TTTATA
1 TTTATA
86101 GATTTTTAAT
Statistics
Matches: 68, Mismatches: 17, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
6 1 0.01
7 19 0.28
8 41 0.60
9 7 0.10
ACGTcount: A:0.24, C:0.01, G:0.00, T:0.75
Consensus pattern (8 bp):
TTTATATT
Found at i:86025 original size:18 final size:17
Alignment explanation
Indices: 86002--86082 Score: 101
Period size: 17 Copynumber: 4.6 Consensus size: 17
85992 TATAAATTAA
86002 TTTATTTTTTT-TTATT
1 TTTATTTTTTTATTATT
* *
86018 TTTATATTATATATTATT
1 TTTAT-TTTTTTATTATT
*
86036 ATTATTTTATTTATTTATT
1 TTTATTTT-TTTA-TTATT
86055 TTTATTTTTTTATTATT
1 TTTATTTTTTTATTATT
86072 TTTATTTTTTT
1 TTTATTTTTTT
86083 CTATTATATA
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
16 5 0.09
17 22 0.40
18 16 0.29
19 12 0.22
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTATTTTTTTATTATT
Found at i:86077 original size:36 final size:37
Alignment explanation
Indices: 86012--86433 Score: 118
Period size: 36 Copynumber: 11.5 Consensus size: 37
86002 TTTATTTTTT
* * *
86012 TTTATTTTTATATTATATATTATTATTATTTTATTTA
1 TTTATTTTTATATTTTTTATTATTTTTATTTTATTTA
*
86049 TTTATTTTTAT-TTTTTTATTATTTTTATTTTTTTCTA
1 TTTATTTTTATATTTTTTATTATTTTTATTTTATT-TA
* * * * * *
86086 TTATATAATTTTATAGATTTTTAATAATATAATTATA-TTA
1 TT-TAT--TTTTATA-TTTTTTATTATTTTTATTTTATTTA
* *
86126 TTTATTTTTTAATTATTTTATATTATAATTTATTTT-TTTA
1 TTTA-TTTTT-A-TATTTTTTATTAT-TTTTATTTTATTTA
* * ** * *
86166 -TT-TTTTTATA-ATATTA-TAAATTTAATTTATATA
1 TTTATTTTTATATTTTTTATTATTTTTATTTTATTTA
* **
86199 TTTATTTATTATCTAATTTA-TATTTTTATTTATATTTA
1 TTTATTT-TTATATTTTTTATTATTTTTATTT-TATTTA
* * *
86237 TTTA--TTAATA-ATTCTA--A-TTTTATTTTA--TA
1 TTTATTTTTATATTTTTTATTATTTTTATTTTATTTA
* * * *
86266 ATAATTAATTATA-TTATTATTATTTTTATTATTAATTTA
1 TTTATT-TTTATATTTTTTATTATTTTTATT-TT-ATTTA
*
86305 TTCTATTTTT-TATTTATTTA--ATTTATATTTTATTTA
1 TT-TATTTTTATATTT-TTTATTATTTTTATTTTATTTA
* * * * *
86341 TATTATTCTAATA-ATTATA-TATTTAATTATATTAATTTA
1 T-TTATTTTTATATTTTTTATTATTT--TTAT-TTTATTTA
* * * *
86380 TTTATTAATTATTTTTATTTATTAATTTTA-ATTA-TTA
1 TTTATT-TTTATATTT-TTTATTATTTTTATTTTATTTA
**
86417 TTTATAATTATATTTTT
1 TTTATTTTTATATTTTT
86434 ATTTATATAA
Statistics
Matches: 281, Mismatches: 64, Indels: 82
0.66 0.15 0.19
Matches are distributed among these distances:
29 4 0.01
31 2 0.01
32 23 0.08
33 6 0.02
34 10 0.04
35 20 0.07
36 51 0.18
37 46 0.16
38 36 0.13
39 30 0.11
40 31 0.11
41 4 0.01
42 18 0.06
ACGTcount: A:0.32, C:0.01, G:0.00, T:0.66
Consensus pattern (37 bp):
TTTATTTTTATATTTTTTATTATTTTTATTTTATTTA
Found at i:86097 original size:23 final size:23
Alignment explanation
Indices: 85997--86099 Score: 61
Period size: 22 Copynumber: 4.5 Consensus size: 23
85987 TTTTTTATAA
*
85997 ATTAA-TTTATTTTT-TTTTATT
1 ATTAATTTTATTTTTATTCTATT
* * * *
86018 TTTATATTATATATTATTATTATTTT
1 ATTA-ATT-T-TATTTTTATTCTATT
* * *
86044 ATTTA-TTTATTTTTATTTTTTT
1 ATTAATTTTATTTTTATTCTATT
*
86066 ATTATTTTTATTTTT-TTCTATT
1 ATTAATTTTATTTTTATTCTATT
86088 ATATAATTTTAT
1 AT-TAATTTTAT
86100 AGATTTTTAA
Statistics
Matches: 62, Mismatches: 13, Indels: 12
0.71 0.15 0.14
Matches are distributed among these distances:
21 3 0.05
22 24 0.39
23 19 0.31
24 2 0.03
25 7 0.11
26 7 0.11
ACGTcount: A:0.25, C:0.01, G:0.00, T:0.74
Consensus pattern (23 bp):
ATTAATTTTATTTTTATTCTATT
Found at i:86188 original size:28 final size:28
Alignment explanation
Indices: 86120--86182 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
86110 TAATATAATT
86120 ATATTATTTATTTTTTAATTATTTTATA
1 ATATTATTTATTTTTTAATTATTTTATA
* * * *
86148 TTATAATTTATTTTTTTATTTTTTTATA
1 ATATTATTTATTTTTTAATTATTTTATA
86176 ATATTAT
1 ATATTAT
86183 AAATTTAATT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (28 bp):
ATATTATTTATTTTTTAATTATTTTATA
Found at i:86204 original size:24 final size:23
Alignment explanation
Indices: 86185--86606 Score: 150
Period size: 24 Copynumber: 18.4 Consensus size: 23
86175 AATATTATAA
86185 ATTTAATTTATATATTTATTTATT
1 ATTTAATTTATATATTTATTTA-T
* *
86209 ATCTAATTTATATTTTTATTTAT
1 ATTTAATTTATATATTTATTTAT
* *
86232 ATTT-ATTTAT-TAATAATTCTA-
1 ATTTAATTTATATATTTATT-TAT
* * *
86253 ATTTTATTTTATAATAATTAATTAT
1 A-TTTAATTTAT-ATATTTATTTAT
86278 A-TT-A-TTAT-TA-TT-TTTAT
1 ATTTAATTTATATATTTATTTAT
*
86295 -TATTAATTTATTCTATTT-TTTATTT
1 AT-TTAATTTA-TATATTTATTTA--T
86320 ATTTAATTTATAT-TTTATTTAT
1 ATTTAATTTATATATTTATTTAT
*
86342 A-TT-ATTCTA-ATAATTA--TAT
1 ATTTAATT-TATATATTTATTTAT
86361 ATTTAA-TTATATTAATTTATTTATT
1 ATTTAATTTATA-T-ATTTATTTA-T
* *
86386 AATT-ATTT-T-TATTTATTAAT
1 ATTTAATTTATATATTTATTTAT
86406 -TTTAA-TTAT-TATTTATAATTAT
1 ATTTAATTTATATATTTAT--TTAT
* ** * *
86428 ATTTTTATTTATATA-AAATTAAA
1 A-TTTAATTTATATATTTATTTAT
86451 ATTTTAATATTATAATATTTATTTAT
1 A-TTTAAT-TTAT-ATATTTATTTAT
**
86477 ATAAAATTTAATTATTATTTTATTTAT
1 ATTTAATTT-A-TA-TA-TTTATTTAT
*
86504 ATTTAA-TTAT-TTTTTA-TTAT
1 ATTTAATTTATATATTTATTTAT
* * *
86524 AATCTTTATTTTTAATAATTATTTAT
1 -AT-TTAATTTAT-ATATTTATTTAT
86550 ATTTAATTTATTATTAATTT-TTTA-
1 ATTTAATTTA-TA-T-ATTTATTTAT
*
86574 ATTAAATTTTATATATTTATTT-T
1 ATTTAA-TTTATATATTTATTTAT
86597 ATTTTAATTT
1 A-TTTAATTT
86607 TTTTTTATTA
Statistics
Matches: 300, Mismatches: 42, Indels: 113
0.66 0.09 0.25
Matches are distributed among these distances:
17 4 0.01
18 4 0.01
19 13 0.04
20 26 0.09
21 34 0.11
22 31 0.10
23 40 0.13
24 61 0.20
25 54 0.18
26 20 0.07
27 13 0.04
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.64
Consensus pattern (23 bp):
ATTTAATTTATATATTTATTTAT
Found at i:86228 original size:6 final size:6
Alignment explanation
Indices: 86124--86441 Score: 60
Period size: 6 Copynumber: 53.5 Consensus size: 6
86114 ATAATTATAT
* * * *
86124 TATTTA T-TTTT TAATTA T-TTTA TA-TTA TAATTTA TTTTTT TATTT-
1 TATTTA TATTTA TATTTA TATTTA TATTTA T-ATTTA TATTTA TATTTA
*
86169 T-TTTA TAATATTA TAAATTTA -ATTTA TATATT- TATTTA TTATCTA
1 TATTTA T-AT-TTA T--ATTTA TATTTA TAT-TTA TATTTA -TATTTA
* *
86214 -ATTTA TATTTT TATTTA TATTTA TTTATTAA TAATTCTA -ATTT- TATTTTA
1 TATTTA TATTTA TATTTA TATTTA --TATTTA T-ATT-TA TATTTA TA-TTTA
* * * * *
86264 TAATAA TTAATTA TA-TTA T-TATTA TTTTTA T-TATTA -ATTTA T-TCTA
1 TATTTA -TATTTA TATTTA TAT-TTA TATTTA TAT-TTA TATTTA TATTTA
* *
86310 T-TTTT TA-TT- TATTTA -ATTTA TATTT- TATTTA TA-TTA T-TCTAA
1 TATTTA TATTTA TATTTA TATTTA TATTTA TATTTA TATTTA TAT-TTA
* *
86352 TAATTATA TATTTA -A-TTA TA-TTA -ATTTA TTTATTAA TTATTTT TATTTA
1 T-ATT-TA TATTTA TATTTA TATTTA TATTTA --TATTTA -TATTTA TATTTA
* * *
86401 TTAATTT- TAATTA TTATTTA TAATTA TATTTT TATTTA TAT
1 -T-ATTTA TATTTA -TATTTA TATTTA TATTTA TATTTA TAT
86442 AAAATTAAAA
Statistics
Matches: 234, Mismatches: 31, Indels: 94
0.65 0.09 0.26
Matches are distributed among these distances:
4 9 0.04
5 71 0.30
6 89 0.38
7 38 0.16
8 24 0.10
9 3 0.01
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.65
Consensus pattern (6 bp):
TATTTA
Found at i:86241 original size:67 final size:66
Alignment explanation
Indices: 86164--86503 Score: 172
Period size: 66 Copynumber: 5.1 Consensus size: 66
86154 TTTATTTTTT
*
86164 TATTTTTTTATAATATTATAAATTTAATTTATATATTTATTTATTATCTAATTTATATTTTTATT
1 TATTTATTTATAATATTATAAATTTAATTTATATATTTATTTATTAT-TAATTTATATTTTTATT
86229 TA
65 TA
* * * * *
86231 TATTTATTTATTAATAATTCTAATTTTATTTTATAATAATTAATTA-TATT-A-TTATTATTTTT
1 TATTTATTTA-TAAT-ATTATAAATTTAATTTAT-ATATTTATTTATTATTAATTTA-TATTTTT
86293 A-TTA
62 ATTTA
* * **
86297 TTAATTTATTCTAT-TTTTTATTTATTTAATTTATAT-TTTATTTATATTATTCTAATAATTATA
1 -T-ATTTATT-TATAATATTATAAATTTAATTTATATATTTA-TT-TATTA-T-TAAT--TTATA
* *
86360 TATTTAATTA
57 TTTTTATTTA
* * * * * * * * *
86370 TATTAATTTAT-TTATTAATTATTTTTATTTAT-TAATT-TTAATTATT-ATTTATAATTATATT
1 TATTTATTTATAATATT-ATAAATTTAATTTATATATTTATTTATTATTAATTTATATTTTTATT
*
86431 TT
65 TA
* * *
86433 TATTTA--TATAAAATTA-AAATTTTAATATTATAATATTTATTTA-TATAAAATTTA-ATTATT
1 TATTTATTTATAATATTATAAA-TTTAAT-TTAT-ATATTTATTTATTAT-TAATTTATATTTTT
86493 ATTT-
62 ATTTA
86497 TATTTAT
1 TATTTAT
86504 ATTTAATTAT
Statistics
Matches: 205, Mismatches: 40, Indels: 58
0.68 0.13 0.19
Matches are distributed among these distances:
60 1 0.00
61 9 0.04
62 7 0.03
63 15 0.07
64 16 0.08
65 15 0.07
66 26 0.13
67 23 0.11
68 18 0.09
69 23 0.11
70 18 0.09
71 20 0.10
72 8 0.04
73 6 0.03
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (66 bp):
TATTTATTTATAATATTATAAATTTAATTTATATATTTATTTATTATTAATTTATATTTTTATTT
A
Found at i:86506 original size:37 final size:37
Alignment explanation
Indices: 86388--86513 Score: 116
Period size: 37 Copynumber: 3.4 Consensus size: 37
86378 TATTTATTAA
* *
86388 TTATTTTTATTTAT-T-AATTTTAATTATTATTTATAAT
1 TTATATTTATTTATATAAAATTTAATTATTATTT-T-AT
* * *
86425 TATATTTTTATTTATATAAAATTAAAATT-TTAATATTA-
1 T-TATATTTATTTATATAAAATT-TAATTATT-ATTTTAT
*
86463 TAATATTTATTTATATAAAATTTAATTATTATTTTAT
1 TTATATTTATTTATATAAAATTTAATTATTATTTTAT
*
86500 TTATATTTAATTAT
1 TTATATTTATTTAT
86514 TTTTTATTAT
Statistics
Matches: 73, Mismatches: 9, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
36 9 0.12
37 34 0.47
38 14 0.19
39 2 0.03
40 7 0.10
41 7 0.10
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (37 bp):
TTATATTTATTTATATAAAATTTAATTATTATTTTAT
Found at i:86589 original size:38 final size:35
Alignment explanation
Indices: 86532--86609 Score: 104
Period size: 38 Copynumber: 2.1 Consensus size: 35
86522 ATAATCTTTA
86532 TTTTTAATAATTATTTATATTTAATTTATTATTAAT
1 TTTTTAATAATTATTTATATTTAATTTATT-TTAAT
*
86568 TTTTTAATTAAATT-TTATATATTTATTTTATTTTAAT
1 TTTTTAA-T-AATTATT-TATATTTAATTTATTTTAAT
86605 TTTTT
1 TTTTT
86610 TTTATTAACC
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
36 7 0.18
37 13 0.34
38 18 0.47
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (35 bp):
TTTTTAATAATTATTTATATTTAATTTATTTTAAT
Found at i:86709 original size:16 final size:16
Alignment explanation
Indices: 86688--86726 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
86678 ATCTTTTCAA
*
86688 TTATTTATTTATT-TTT
1 TTATTT-TTAATTATTT
86704 TTATTTTTAATTATTT
1 TTATTTTTAATTATTT
86720 TTATTTT
1 TTATTTT
86727 AAATATTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 5 0.24
16 16 0.76
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (16 bp):
TTATTTTTAATTATTT
Found at i:86734 original size:18 final size:18
Alignment explanation
Indices: 86697--86744 Score: 50
Period size: 16 Copynumber: 2.9 Consensus size: 18
86687 ATTATTTATT
*
86697 TATT-TTTTTATTTT-TA
1 TATTATTTTTATTTTAAA
86713 -ATTATTTTTATTTTAAA
1 TATTATTTTTATTTTAAA
*
86730 TATTA-TATTATTTTA
1 TATTATTTTTATTTTA
86745 TTAACCACTC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 3 0.11
16 10 0.37
17 10 0.37
18 4 0.15
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
TATTATTTTTATTTTAAA
Found at i:86973 original size:16 final size:16
Alignment explanation
Indices: 86945--86983 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
86935 CATCTAACAC
86945 TTTTATAATTATTATT
1 TTTTATAATTATTATT
86961 TTTTAATAA-TATTATT
1 TTTT-ATAATTATTATT
86977 TTATTAT
1 TT-TTAT
86984 TATAAATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTTATAATTATTATT
Found at i:87013 original size:16 final size:17
Alignment explanation
Indices: 86988--87031 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
86978 TATTATTATA
*
86988 AATTTATATATTT-TTT
1 AATTTTTATATTTATTT
87004 AATTTTTATATTTATTT
1 AATTTTTATATTTATTT
*
87021 TATTTATTATA
1 AATTT-TTATA
87032 ATATCACACC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 12 0.50
17 7 0.29
18 5 0.21
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
AATTTTTATATTTATTT
Found at i:87169 original size:16 final size:16
Alignment explanation
Indices: 87148--87188 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
87138 AACCCCACCT
87148 TTATTTATAATATTAA
1 TTATTTATAATATTAA
*
87164 TTATTTTATATTATTAA
1 TTA-TTTATAATATTAA
*
87181 TAATTTAT
1 TTATTTAT
87189 TAAATATCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 8 0.36
17 14 0.64
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTATTTATAATATTAA
Found at i:87454 original size:21 final size:22
Alignment explanation
Indices: 87427--87479 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 22
87417 CACCACATAC
*
87427 TTATTAATATTATTATATTTTA
1 TTATTAATATTATTATAATTTA
*
87449 -TATTAAGATTATTATAATTTA
1 TTATTAATATTATTATAATTTA
*
87470 TTATTTATAT
1 TTATTAATAT
87480 AATAATTATC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 19 0.73
22 7 0.27
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (22 bp):
TTATTAATATTATTATAATTTA
Found at i:87687 original size:33 final size:32
Alignment explanation
Indices: 87644--87809 Score: 122
Period size: 33 Copynumber: 4.8 Consensus size: 32
87634 ATTCTCTTAA
*
87644 TATTTTTTTTATTTTTATTTATTATATTTATT
1 TATTTATTTTATTTTTATTTATTATATTTATT
* *
87676 ATATTTATTTTATATTATTATTTCTTATTTTTATT
1 -TATTTATTTTAT-TT-TTATTTATTATATTTATT
* **
87711 TTTTTA-TTTATAAATTATATT-TTATATATTATT
1 TATTTATTTTAT-TTTTAT-TTATTATAT-TTATT
*
87744 TTTTTATACTTTATTTTTATTTTATTATTATTTTATTTT
1 TATTTAT--TTTATTTTTA-TTTATTA-TA-TTTA--TT
87783 TATTTATTTTATTATTTA-TTATTATAT
1 TATTTATTTTATT-TTTATTTATTATAT
87810 AATTAATAAT
Statistics
Matches: 109, Mismatches: 10, Indels: 27
0.75 0.07 0.18
Matches are distributed among these distances:
32 9 0.08
33 30 0.28
34 8 0.07
35 23 0.21
36 15 0.14
37 11 0.10
38 5 0.05
39 8 0.07
ACGTcount: A:0.26, C:0.01, G:0.00, T:0.73
Consensus pattern (32 bp):
TATTTATTTTATTTTTATTTATTATATTTATT
Found at i:87707 original size:54 final size:53
Alignment explanation
Indices: 87649--87805 Score: 155
Period size: 49 Copynumber: 2.9 Consensus size: 53
87639 CTTAATATTT
87649 TTTTTATTTTTATTTATTATATTTATTATATTTATTTTATATTATTATTTCTTA
1 TTTTTATTTTTATTTATTATATTTATTATATTTATTTTATATTATTATTT-TTA
** *
87703 TTTTTA-TTTT-TTTATT-TATAAATTATA-TT-TTATATATTATT-TTTTTA
1 TTTTTATTTTTATTTATTATATTTATTATATTTATTTTATATTATTATTTTTA
* *
87750 TACTTTATTTTTATTTTATTATTATTTTATTTTTATTTATTTTATTATTTATTATT
1 T-TTTTATTTTTA-TTTATTA-TA-TTTA-TTATATTTATTTTA-TA-TTATTATT
87806 ATATAATTAA
Statistics
Matches: 82, Mismatches: 8, Indels: 20
0.75 0.07 0.18
Matches are distributed among these distances:
47 4 0.05
48 7 0.09
49 15 0.18
50 2 0.02
51 15 0.18
52 6 0.07
53 6 0.07
54 8 0.10
55 4 0.05
56 2 0.02
57 4 0.05
58 2 0.02
59 5 0.06
60 2 0.02
ACGTcount: A:0.25, C:0.01, G:0.00, T:0.73
Consensus pattern (53 bp):
TTTTTATTTTTATTTATTATATTTATTATATTTATTTTATATTATTATTTTTA
Found at i:87715 original size:62 final size:61
Alignment explanation
Indices: 87647--87862 Score: 180
Period size: 62 Copynumber: 3.5 Consensus size: 61
87637 CTCTTAATAT
*
87647 TTTTTTTATTTTTATTTATTATATTTATTATATTTATTTTATATTATTATTTCTTATTTTTA
1 TTTTTTTATTTTTATATATTATATTTATTATATTTATTTTATATTATTATTT-TTATTTTTA
* *
87709 TTTTTTTA--TTTATAAATTATATTTTATATATTATTT-TTTTATACT-TTATTTTTATTTTATT
1 TTTTTTTATTTTTATATATTATA-TTTAT-TA-TATTTATTTTATATTATTATTTTTA-TTT-TT
87770 A
61 A
* * * * * * *
87771 TTATTTTATTTTTATTTATTTTA-TTATT-TA-TTATTATATAATTAATAATATTT-TTTATA
1 TTTTTTTATTTTTATATATTATATTTATTATATTTATTTTAT-ATT-ATTATTTTTATTTTTA
87830 TTTTATTCT-TTTTTATATATTATATATTATTAT
1 TTTT-TT-TATTTTTATATATTATAT-TTATTAT
87863 CCTCAATTTT
Statistics
Matches: 123, Mismatches: 15, Indels: 31
0.73 0.09 0.18
Matches are distributed among these distances:
58 2 0.02
59 12 0.10
60 34 0.28
61 16 0.13
62 43 0.35
63 6 0.05
64 10 0.08
ACGTcount: A:0.28, C:0.01, G:0.00, T:0.71
Consensus pattern (61 bp):
TTTTTTTATTTTTATATATTATATTTATTATATTTATTTTATATTATTATTTTTATTTTTA
Found at i:87805 original size:47 final size:47
Alignment explanation
Indices: 87652--87807 Score: 82
Period size: 50 Copynumber: 3.3 Consensus size: 47
87642 AATATTTTTT
*
87652 TTATTTTTA-TTTATTA-TA-TTTA-TTATATTTATTTTA-TAT-TA
1 TTATTTTTATTTTATTATTATTTTATTTTTATTTATTTTATTATATA
* *
87693 TTATTTCTTA-TTT-TTATTTTTTTATTTATAAATTATATTTTA-TATATTA
1 TTATTT-TTATTTTATTATTATTTTATTT-T-TATT-TATTTTATTATA-TA
* * *
87742 TT-TTTTTATACTTTATTTTTATTTTATTATTATTTTATTTTTATT-TATT
1 TTATTTTTAT--TTTATTATTATTTTATTTTTA-TTTA-TTTTATTATATA
87791 TTATTATTTATTATTAT
1 TTATT-TTTATT-TTAT
87808 ATAATTAATA
Statistics
Matches: 88, Mismatches: 8, Indels: 29
0.70 0.06 0.23
Matches are distributed among these distances:
41 9 0.10
42 7 0.08
43 4 0.05
44 2 0.02
46 3 0.03
47 13 0.15
48 3 0.03
49 11 0.12
50 19 0.22
51 17 0.19
ACGTcount: A:0.26, C:0.01, G:0.00, T:0.72
Consensus pattern (47 bp):
TTATTTTTATTTTATTATTATTTTATTTTTATTTATTTTATTATATA
Found at i:87832 original size:41 final size:40
Alignment explanation
Indices: 87658--87860 Score: 147
Period size: 38 Copynumber: 5.1 Consensus size: 40
87648 TTTTTTATTT
* * * *
87658 TTATTTATTATA-TTTATTATAT-TTATTTTATATTATTA
1 TTATTTTTTATATTTTATTATTTATTATTATATATTAATA
* * * *
87696 TT-TCTTATTTTTATTTTTTTATTTATAAATTATATTTTATATA
1 TTAT-TT-TTTATATTTTATTATTTAT-TATTATATATTA-ATA
* *
87739 TTATTTTTTTATACTTTATT-TTTATT-TTAT-TATT-ATT
1 TTA-TTTTTTATATTTTATTATTTATTATTATATATTAATA
*
87776 TTATTTTTATTTATTTTATTATTTATTATTATATAATTAATA
1 TTATTTTT-TATATTTTATTATTTATTATTATAT-ATTAATA
* *
87818 ATATTTTTTATATTTTATT-CTT-TT-TTATATATTATATA
1 TTATTTTTTATATTTTATTATTTATTATTATATATTA-ATA
87856 TTATT
1 TTATT
87861 ATCCTCAATT
Statistics
Matches: 129, Mismatches: 21, Indels: 30
0.72 0.12 0.17
Matches are distributed among these distances:
36 5 0.04
37 19 0.15
38 23 0.18
39 13 0.10
40 15 0.12
41 14 0.11
42 23 0.18
43 14 0.11
44 2 0.02
45 1 0.01
ACGTcount: A:0.29, C:0.01, G:0.00, T:0.70
Consensus pattern (40 bp):
TTATTTTTTATATTTTATTATTTATTATTATATATTAATA
Found at i:88054 original size:38 final size:39
Alignment explanation
Indices: 87973--88054 Score: 89
Period size: 38 Copynumber: 2.1 Consensus size: 39
87963 ATTTATATTT
* *
87973 TTATTAATTATTATATTATTTTATTTATATATATTATAA
1 TTATTAATTATAATATTATTTTATTTATATATAATATAA
* *
88012 TTATT-ATTATAATATTATAATTTTTTTA-AT-TAATATAC
1 TTATTAATTATAATATTAT--TTTATTTATATATAATATAA
88050 TTATT
1 TTATT
88055 TATTTCTATA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
38 23 0.62
39 7 0.19
40 7 0.19
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (39 bp):
TTATTAATTATAATATTATTTTATTTATATATAATATAA
Found at i:88078 original size:24 final size:24
Alignment explanation
Indices: 88042--88088 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
88032 TTTTTTTAAT
*
88042 TAATATACTTATTTATTTCTATAA
1 TAATATACTTATTTATTTATATAA
*
88066 TAATATA-TATATTTTTTTATATA
1 TAATATACT-TATTTATTTATATA
88089 TTTATTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.57
Consensus pattern (24 bp):
TAATATACTTATTTATTTATATAA
Found at i:88204 original size:37 final size:36
Alignment explanation
Indices: 88137--88288 Score: 109
Period size: 37 Copynumber: 4.1 Consensus size: 36
88127 AATCATTTAA
* * *
88137 TATTATATATATTTATAAATTATATATTATTTATATAT
1 TATTATTTA-ATTTAT-ATTTATATTTTATTTATATAT
88175 TATTATTTAATTTATATTTATAATTTTATTTATATAT
1 TATTATTTAATTTATATTTAT-ATTTTATTTATATAT
*
88212 CT-TTATTTTAA-TT-T-TTTATATTTTTTTTCATATAAAT
1 -TATTA-TTTAATTTATATTTATATTTTATTT-ATAT--AT
* * *
88249 TTTTATTT-ATTTATATATAATTATTTAATTTATAT-T
1 TATTATTTAATTTATAT-TTA-TATTTTATTTATATAT
88285 TATT
1 TATT
88289 TTTTTTTTTT
Statistics
Matches: 94, Mismatches: 8, Indels: 26
0.73 0.06 0.20
Matches are distributed among these distances:
34 8 0.09
35 10 0.11
36 16 0.17
37 31 0.33
38 15 0.16
39 6 0.06
40 8 0.09
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.64
Consensus pattern (36 bp):
TATTATTTAATTTATATTTATATTTTATTTATATAT
Found at i:88209 original size:18 final size:19
Alignment explanation
Indices: 87959--88211 Score: 110
Period size: 18 Copynumber: 13.3 Consensus size: 19
87949 AAAACTTTTA
* *
87959 ATATATTTATATTTTTATTA
1 ATATA-TTATAATTTTATTT
87979 AT-TATTATATTATTTTATTTAT
1 ATATATTATA--ATTTTA-TT-T
88001 ATATATTATAATTATTA-TT
1 ATATATTATAATT-TTATTT
88020 ATAATATTATAATTTT-TTT
1 AT-ATATTATAATTTTATTT
* *
88039 A-ATTAATATACTTATTTATTTCT
1 ATA-TATTATA-AT-TTTA-TT-T
88062 ATAATAATATATATATTTT-TTT
1 AT-AT-AT-TATA-ATTTTATTT
*
88084 ATATATTTATTAAATTT-TTT
1 ATATA-TTA-TAATTTTATTT
88104 ATA-ATT-T-ATTTT-TTT
1 ATATATTATAATTTTATTT
* *
88119 A-ATATT-TAA-ATCATTT
1 ATATATTATAATTTTATTT
*
88135 A-ATATTAT-A-TATATTT
1 ATATATTATAATTTTATTT
* *
88151 ATAAATTAT-ATATTATTT
1 ATATATTATAATTTTATTT
* *
88169 ATATATTATTATTTAATTT
1 ATATATTATAATTTTATTT
88188 ATAT-TTATAATTTTATTT
1 ATATATTATAATTTTATTT
88206 ATATAT
1 ATATAT
88212 CTTTATTTTA
Statistics
Matches: 183, Mismatches: 22, Indels: 57
0.70 0.08 0.22
Matches are distributed among these distances:
14 1 0.01
15 13 0.07
16 17 0.09
17 9 0.05
18 42 0.23
19 24 0.13
20 35 0.19
21 10 0.05
22 10 0.05
23 11 0.06
24 1 0.01
25 5 0.03
26 5 0.03
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (19 bp):
ATATATTATAATTTTATTT
Found at i:88272 original size:18 final size:18
Alignment explanation
Indices: 87993--88283 Score: 74
Period size: 19 Copynumber: 15.8 Consensus size: 18
87983 TTATATTATT
*
87993 TTATTTATATATATTATAA
1 TTATTTATTTATA-TATAA
88012 TTA-TTATTATAATATTATAA
1 TTATTTATT-T-ATA-TATAA
* * *
88032 TTTTTTTAATTA-ATATAC
1 -TTATTTATTTATATATAA
*
88050 TTATTTATTTCTATAATAA
1 TTATTTATTTATAT-ATAA
* * *
88069 TATATATATTTTTTTATATAT
1 T-TAT-T-TATTTATATATAA
* *
88090 TTATTAAATTT-TTTATAA
1 TTATT-TATTTATATATAA
*
88108 TTTATTT-TTT-TA-ATAT
1 -TTATTTATTTATATATAA
* * *
88124 TTAAATCATTTA-ATATTA
1 TT-ATTTATTTATATATAA
* * *
88142 -TATATATTTATAAATTA
1 TTATTTATTTATATATAA
*
88159 -TATATTATTTATATATTA
1 TTAT-TTATTTATATATAA
88177 TTATTTAATTTATATTTATAA
1 TTATTT-ATTTATA--TATAA
**
88198 -T-TTTATTTATATATCT
1 TTATTTATTTATATATAA
*
88214 TTATTTTAATTT-TTTAT-A
1 TTA-TTT-ATTTATATATAA
88232 TT-TTT-TTTCATATA-AA
1 TTATTTATTT-ATATATAA
88248 TTTTTATTTATTTATATATAA
1 ---TTATTTATTTATATATAA
88269 TTATTTAATTTATAT
1 TTATTT-ATTTATAT
88284 TTATTTTTTT
Statistics
Matches: 204, Mismatches: 34, Indels: 68
0.67 0.11 0.22
Matches are distributed among these distances:
14 3 0.01
15 2 0.01
16 21 0.10
17 26 0.13
18 46 0.23
19 49 0.24
20 29 0.14
21 17 0.08
22 11 0.05
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (18 bp):
TTATTTATTTATATATAA
Found at i:88440 original size:26 final size:27
Alignment explanation
Indices: 88399--88479 Score: 87
Period size: 25 Copynumber: 3.0 Consensus size: 27
88389 TATTAAATTA
88399 TATTATTATAATTTTTTTTATTATTTTAT
1 TATTATT-TAA-TTTTTTTATTATTTTAT
* *
88428 TA-TATTTAA-TTTTTTATTATATTAA
1 TATTATTTAATTTTTTTATTATTTTAT
* *
88453 TATTATTTTATTTCTTTA-TATTTTAT
1 TATTATTTAATTTTTTTATTATTTTAT
88479 T
1 T
88480 T
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
25 16 0.36
26 13 0.30
27 9 0.20
28 4 0.09
29 2 0.05
ACGTcount: A:0.28, C:0.01, G:0.00, T:0.70
Consensus pattern (27 bp):
TATTATTTAATTTTTTTATTATTTTAT
Found at i:88442 original size:17 final size:19
Alignment explanation
Indices: 88417--88464 Score: 73
Period size: 17 Copynumber: 2.6 Consensus size: 19
88407 TAATTTTTTT
*
88417 TATTATTTTATTATATTTA
1 TATTATTTTATTATATTAA
88436 -ATT-TTTTATTATATTAA
1 TATTATTTTATTATATTAA
88453 TATTATTTTATT
1 TATTATTTTATT
88465 TCTTTATATT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 13 0.50
18 6 0.23
19 7 0.27
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (19 bp):
TATTATTTTATTATATTAA
Found at i:88459 original size:31 final size:29
Alignment explanation
Indices: 88378--88465 Score: 76
Period size: 28 Copynumber: 3.0 Consensus size: 29
88368 TTAAATTTAA
*
88378 AATTTTATCTTTATTAA-ATTA-TATTATTAT
1 AATTTT-TATTTATTAATATTATTA-TATT-T
*
88408 AATTTTT-TTTATT-ATTTTATTATATTT
1 AATTTTTATTTATTAATATTATTATATTT
*
88435 AATTTTTTATTATATTAATATTATTTTATTT
1 AA-TTTTTATT-TATTAATATTATTATATTT
88466 CTTTATATTT
Statistics
Matches: 49, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
27 4 0.08
28 18 0.37
29 5 0.10
30 10 0.20
31 12 0.24
ACGTcount: A:0.32, C:0.01, G:0.00, T:0.67
Consensus pattern (29 bp):
AATTTTTATTTATTAATATTATTATATTT
Done.