Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1403
Parameters: 2 7 7 80 10 50 1000
Length:  83123

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1672--1709
20
1.9
20
88
0
58
76
5
5
13
1.13
1669--1709
11
3.9
11
81
12
50
70
7
7
14
1.31
1749--1800
13
4.0
13
92
7
88
63
0
13
23
1.29
8433--8479
22
2.1
22
96
0
85
31
4
40
23
1.74
11886--11936
12
4.2
12
89
2
75
66
7
3
21
1.34
11974--12027
15
3.6
15
92
7
92
62
5
12
18
1.48
15941--15993
21
2.5
21
77
20
56
9
18
1
69
1.25
20806--20874
11
5.6
12
76
17
61
14
7
4
73
1.20
23702--23750
21
2.3
21
86
6
64
79
6
0
14
0.91
27610--27655
18
2.5
19
75
10
51
65
0
21
13
1.26
30443--30474
16
2.0
16
100
0
64
12
12
25
50
1.75
30661--30808
72
2.0
73
84
3
192
25
16
29
29
1.96
31918--32065
72
2.0
73
83
3
183
30
29
15
25
1.96
32252--32283
16
2.0
16
100
0
64
50
25
12
12
1.75
34308--34367
18
3.2
18
75
11
66
6
16
3
73
1.18
35300--35328
12
2.4
12
100
0
58
13
0
6
79
0.93
36976--37038
21
3.0
21
88
2
81
33
31
4
30
1.78
37337--37398
24
2.4
25
86
7
81
74
1
9
14
1.15
37350--37396
13
3.8
13
88
5
71
80
0
8
10
0.89
37350--37398
26
2.0
24
92
8
80
77
0
8
14
0.98
37350--37399
12
4.1
12
85
12
66
76
0
10
14
1.03
39604--39651
17
2.8
17
80
0
60
77
4
10
8
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43678--43740
21
3.0
21
88
2
81
33
31
4
30
1.78
54649--54695
22
2.2
21
85
14
62
76
6
10
6
1.15
54660--54720
29
2.2
28
82
11
81
77
4
14
3
1.07
55741--55858
12
9.8
12
68
18
50
70
3
18
7
1.26
55758--55861
18
5.6
18
75
5
82
71
3
18
6
1.24
55754--55861
6
17.7
6
70
6
74
71
3
18
6
1.23
55822--55859
13
2.8
13
82
17
51
73
0
18
7
1.06
55823--55873
21
2.4
21
74
6
50
74
1
17
5
1.11
55876--55938
33
1.9
33
84
12
85
55
6
25
12
1.60
57715--57768
20
2.7
20
82
0
63
24
20
18
37
1.94
57715--57788
30
2.5
30
86
8
98
21
20
18
39
1.93
57715--57779
20
3.2
20
71
16
53
23
21
16
38
1.93
59267--59367
52
1.9
52
95
0
184
32
21
18
26
1.97
64159--64201
15
2.9
15
80
19
54
6
25
0
67
1.15
64165--64226
26
2.3
27
80
5
72
9
22
0
67
1.19
70757--70822
33
2.0
34
85
8
91
27
24
16
31
1.96
70757--70833
33
2.3
34
80
13
88
29
22
14
33
1.93
71258--71304
20
2.3
20
85
0
67
29
36
12
21
1.91
73922--74027
48
2.2
47
85
9
135
59
1
24
14
1.45
75696--75742
20
2.3
20
85
0
67
29
36
12
21
1.91
81771--82116
40
8.7
40
92
1
570
21
27
20
30
1.98

Tables:   1

The End!