Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1636
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65327
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:2450 original size:20 final size:20
Alignment explanation
Indices: 2425--2479 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
2415 TGTGGTTCAA
**
2425 CTCATTCGAGCTCAAGTTAG
1 CTCATTCGAGCTCAAGGCAG
*
2445 CTCATTCGTGCTCAAGGCAG
1 CTCATTCGAGCTCAAGGCAG
*
2465 CTCATTCAAGCTCAA
1 CTCATTCGAGCTCAA
2480 TTTAACTCGT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (20 bp):
CTCATTCGAGCTCAAGGCAG
Found at i:10613 original size:12 final size:12
Alignment explanation
Indices: 10598--10632 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
10588 AAAAAAAAAG
10598 GAAAAAAAATTC
1 GAAAAAAAATTC
10610 GAAAAAAAATTC
1 GAAAAAAAATTC
*
10622 AAAAAAAAATT
1 GAAAAAAAATT
10633 TGTATTCAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.71, C:0.06, G:0.06, T:0.17
Consensus pattern (12 bp):
GAAAAAAAATTC
Found at i:10719 original size:16 final size:16
Alignment explanation
Indices: 10683--10720 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
10673 TCAGTATTGG
10683 AAAAAAAAAGAGAAAT
1 AAAAAAAAAGAGAAAT
*
10699 TAAAAAAAAGAAGAAA-
1 AAAAAAAAAG-AGAAAT
10715 AAAAAA
1 AAAAAA
10721 TGTTTCAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.84, C:0.00, G:0.11, T:0.05
Consensus pattern (16 bp):
AAAAAAAAAGAGAAAT
Found at i:12456 original size:17 final size:15
Alignment explanation
Indices: 12436--12474 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 15
12426 GCGAGCGAGA
12436 AAATGAACATGAAAAAG
1 AAATGAA-A-GAAAAAG
12453 AAATGAAAGAAAAAG
1 AAATGAAAGAAAAAG
12468 AAGATGA
1 AA-ATGA
12475 GTGGGAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 9 0.43
16 5 0.24
17 7 0.33
ACGTcount: A:0.67, C:0.03, G:0.21, T:0.10
Consensus pattern (15 bp):
AAATGAAAGAAAAAG
Found at i:13979 original size:20 final size:20
Alignment explanation
Indices: 13954--14008 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
13944 TGTGGTTCAA
*
13954 CTCATTCGAGCTCAAGTTAG
1 CTCATTCGAGCTCAAGTCAG
*
13974 CTCATTCGTGCTCAAGTCAG
1 CTCATTCGAGCTCAAGTCAG
*
13994 CTCATTCAAGCTCAA
1 CTCATTCGAGCTCAA
14009 TTTAACTCGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (20 bp):
CTCATTCGAGCTCAAGTCAG
Found at i:17407 original size:13 final size:12
Alignment explanation
Indices: 17383--17435 Score: 58
Period size: 11 Copynumber: 4.6 Consensus size: 12
17373 ACGGTATTGT
17383 AAAAAAA-T-AA
1 AAAAAAATTCAA
*
17393 AAAAAAACTTGAA
1 AAAAAAA-TTCAA
17406 AAAAAAATTC-A
1 AAAAAAATTCAA
*
17417 AAAAAATTTCAA
1 AAAAAAATTCAA
17429 AAAAAAA
1 AAAAAAA
17436 GTTTGTATTC
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
10 7 0.19
11 10 0.28
12 10 0.28
13 9 0.25
ACGTcount: A:0.77, C:0.06, G:0.02, T:0.15
Consensus pattern (12 bp):
AAAAAAATTCAA
Found at i:17412 original size:23 final size:23
Alignment explanation
Indices: 17383--17435 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
17373 ACGGTATTGT
*
17383 AAAAAAATAAAAAAAAACTTGAA
1 AAAAAAATAAAAAAAAACTTCAA
** *
17406 AAAAAAATTCAAAAAAATTTCAA
1 AAAAAAATAAAAAAAAACTTCAA
17429 AAAAAAA
1 AAAAAAA
17436 GTTTGTATTC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.77, C:0.06, G:0.02, T:0.15
Consensus pattern (23 bp):
AAAAAAATAAAAAAAAACTTCAA
Found at i:17419 original size:11 final size:11
Alignment explanation
Indices: 17383--17435 Score: 54
Period size: 12 Copynumber: 4.6 Consensus size: 11
17373 ACGGTATTGT
17383 AAAAAAA-TAA
1 AAAAAAATTAA
17393 AAAAAAACTTGAA
1 AAAAAAA-TT-AA
*
17406 AAAAAAATTCA
1 AAAAAAATTAA
*
17417 AAAAAATTTCAA
1 AAAAAAATT-AA
17429 AAAAAAA
1 AAAAAAA
17436 GTTTGTATTC
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
10 7 0.20
11 9 0.26
12 10 0.29
13 9 0.26
ACGTcount: A:0.77, C:0.06, G:0.02, T:0.15
Consensus pattern (11 bp):
AAAAAAATTAA
Found at i:17497 original size:13 final size:13
Alignment explanation
Indices: 17475--17546 Score: 56
Period size: 16 Copynumber: 5.2 Consensus size: 13
17465 ATTTAGTATT
17475 GAAG-AAAAAAAA
1 GAAGAAAAAAAAA
17487 GAAGAAAAAAAATTCA
1 GAAGAAAAAAAA---A
**
17503 GAATTAAAAAAAA
1 GAAGAAAAAAAAA
*
17516 GAAGAAAAAAAAT
1 GAAGAAAAAAAAA
17529 GAAATTGAAAAAAAAA
1 G-AA--GAAAAAAAAA
17545 GA
1 GA
17547 GTGATTGAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 11
0.73 0.09 0.17
Matches are distributed among these distances:
12 4 0.09
13 19 0.40
14 2 0.04
15 1 0.02
16 21 0.45
ACGTcount: A:0.75, C:0.01, G:0.14, T:0.10
Consensus pattern (13 bp):
GAAGAAAAAAAAA
Found at i:17505 original size:16 final size:14
Alignment explanation
Indices: 17475--17528 Score: 51
Period size: 13 Copynumber: 3.9 Consensus size: 14
17465 ATTTAGTATT
17475 GAAG-AAAAAAA-A
1 GAAGAAAAAAAATA
17487 GAAGAAAAAAAATTCA
1 GAAGAAAAAAAA-T-A
**
17503 GAATTAAAAAAA-A
1 GAAGAAAAAAAATA
17516 GAAGAAAAAAAAT
1 GAAGAAAAAAAAT
17529 GAAATTGAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
12 4 0.12
13 18 0.55
16 11 0.33
ACGTcount: A:0.76, C:0.02, G:0.13, T:0.09
Consensus pattern (14 bp):
GAAGAAAAAAAATA
Found at i:18400 original size:16 final size:15
Alignment explanation
Indices: 18379--18416 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 15
18369 GCGAGCGAGA
18379 AAATGAAATGAAAAAG
1 AAATGAAA-GAAAAAG
18395 AAATGAAAGAAAAAG
1 AAATGAAAGAAAAAG
18410 AAGATGA
1 AA-ATGA
18417 GTGAGATAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.68, C:0.00, G:0.21, T:0.11
Consensus pattern (15 bp):
AAATGAAAGAAAAAG
Found at i:19921 original size:20 final size:20
Alignment explanation
Indices: 19896--19950 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
19886 TGTGGTTCAA
*
19896 CTCATTCGAGCTCAAGTTAG
1 CTCATTCGAGCTCAAGTCAG
*
19916 CTCATTCGTGCTCAAGTCAG
1 CTCATTCGAGCTCAAGTCAG
*
19936 CTCATTCAAGCTCAA
1 CTCATTCGAGCTCAA
19951 TTTAACTCGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (20 bp):
CTCATTCGAGCTCAAGTCAG
Found at i:23351 original size:14 final size:13
Alignment explanation
Indices: 23324--23379 Score: 64
Period size: 13 Copynumber: 4.5 Consensus size: 13
23314 ACGGTATTGT
23324 AAAAAAA-T-AAA
1 AAAAAAATTGAAA
*
23335 AAAAAACTTGAAA
1 AAAAAAATTGAAA
23348 AAAAAAATTCG-AA
1 AAAAAAATT-GAAA
*
23361 AAAAAAATTCAAA
1 AAAAAAATTGAAA
23374 AAAAAA
1 AAAAAA
23380 GTTTGTATTC
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
11 6 0.16
12 1 0.03
13 30 0.79
14 1 0.03
ACGTcount: A:0.79, C:0.05, G:0.04, T:0.12
Consensus pattern (13 bp):
AAAAAAATTGAAA
Found at i:23460 original size:30 final size:30
Alignment explanation
Indices: 23424--23493 Score: 115
Period size: 30 Copynumber: 2.3 Consensus size: 30
23414 GTATTGAAGG
*
23424 AAAAAAAAGAAGAAAAAAAATTCGGAATT-A
1 AAAAAAAAGAAGAAAAAAAA-TCGAAATTGA
23454 AAAAAAAAGAAGAAAAAAAATCGAAATTGA
1 AAAAAAAAGAAGAAAAAAAATCGAAATTGA
23484 AAAAAAAAGA
1 AAAAAAAAGA
23494 GTGATTGAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
29 7 0.18
30 31 0.82
ACGTcount: A:0.74, C:0.03, G:0.13, T:0.10
Consensus pattern (30 bp):
AAAAAAAAGAAGAAAAAAAATCGAAATTGA
Found at i:30651 original size:17 final size:15
Alignment explanation
Indices: 30629--30681 Score: 88
Period size: 15 Copynumber: 3.4 Consensus size: 15
30619 TAGCTTCTTC
30629 TTTTTTTCACGAAAATT
1 TTTTTTTCACG--AATT
30646 TTTTTTTCACGAATT
1 TTTTTTTCACGAATT
30661 TTTTTTTCACGAATT
1 TTTTTTTCACGAATT
30676 TTTTTT
1 TTTTTT
30682 CAACTTGATA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
15 25 0.69
17 11 0.31
ACGTcount: A:0.21, C:0.11, G:0.06, T:0.62
Consensus pattern (15 bp):
TTTTTTTCACGAATT
Found at i:30742 original size:11 final size:11
Alignment explanation
Indices: 30726--30779 Score: 83
Period size: 11 Copynumber: 5.0 Consensus size: 11
30716 AACCAATTTT
30726 TTTTTTTTGAA
1 TTTTTTTTGAA
30737 TTTTTTTTGAA
1 TTTTTTTTGAA
*
30748 -TTTTTTTGAT
1 TTTTTTTTGAA
30758 TTTTTTTTGAA
1 TTTTTTTTGAA
*
30769 ATTTTTTTGAA
1 TTTTTTTTGAA
30780 GAAACTACTA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
10 9 0.23
11 30 0.77
ACGTcount: A:0.19, C:0.00, G:0.09, T:0.72
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:30751 original size:21 final size:22
Alignment explanation
Indices: 30727--30779 Score: 90
Period size: 21 Copynumber: 2.5 Consensus size: 22
30717 ACCAATTTTT
30727 TTTTTTTGAATTTTTTTTG-AA
1 TTTTTTTGAATTTTTTTTGAAA
*
30748 TTTTTTTGATTTTTTTTTGAAA
1 TTTTTTTGAATTTTTTTTGAAA
30770 TTTTTTTGAA
1 TTTTTTTGAA
30780 GAAACTACTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 18 0.62
22 11 0.38
ACGTcount: A:0.19, C:0.00, G:0.09, T:0.72
Consensus pattern (22 bp):
TTTTTTTGAATTTTTTTTGAAA
Found at i:31813 original size:21 final size:23
Alignment explanation
Indices: 31768--31814 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
31758 TCACCTGCAA
* *
31768 TAAACACATTAAAATGAGTTTAT
1 TAAACACATTAAAATCAGCTTAT
31791 TAAACACATTAAAA-CA-CTTAT
1 TAAACACATTAAAATCAGCTTAT
31812 TAA
1 TAA
31815 TCATAACACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 1 0.05
23 14 0.64
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (23 bp):
TAAACACATTAAAATCAGCTTAT
Found at i:41099 original size:22 final size:22
Alignment explanation
Indices: 41074--41116 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
41064 TTTTCTTTTT
*
41074 TTTTTCTCGATTTTTTTTTCAC
1 TTTTTCTCGAATTTTTTTTCAC
* *
41096 TTTTTTTTGAATTTTTTTTCA
1 TTTTTCTCGAATTTTTTTTCA
41117 ATCAATTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.12, C:0.12, G:0.05, T:0.72
Consensus pattern (22 bp):
TTTTTCTCGAATTTTTTTTCAC
Found at i:41113 original size:14 final size:14
Alignment explanation
Indices: 41096--41143 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
41086 TTTTTTTCAC
41096 TTTTTTTTGAATTT
1 TTTTTTTTGAATTT
** *
41110 TTTTTCAATCAATTT
1 TTTTT-TTTGAATTT
*
41125 TTTTTTTCGAATTT
1 TTTTTTTTGAATTT
41139 TTTTT
1 TTTTT
41144 GATTTTTTTT
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
14 15 0.58
15 11 0.42
ACGTcount: A:0.17, C:0.06, G:0.04, T:0.73
Consensus pattern (14 bp):
TTTTTTTTGAATTT
Found at i:45961 original size:22 final size:22
Alignment explanation
Indices: 45931--45974 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
45921 TTTGGTATTT
45931 GGGAATTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
*
45953 GGGATTTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
45975 TGGTTCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.36, T:0.25
Consensus pattern (22 bp):
GGGAATTGGTACGAAATGGTAA
Found at i:48892 original size:23 final size:22
Alignment explanation
Indices: 48840--48892 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
48830 TCCACGTCTT
*
48840 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
48862 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
48885 TTTCTTTT
1 TTTCTTTT
48893 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:48943 original size:21 final size:21
Alignment explanation
Indices: 48849--48943 Score: 60
Period size: 21 Copynumber: 4.7 Consensus size: 21
48839 TTTTCTTTTG
48849 TTTCTTTTTC-T-AAT-TCATT
1 TTTCTTTTTCTTCAATCTC-TT
*
48868 TTCTCTTCTTTCTTCAATTTCTT
1 TT-TCTT-TTTCTTCAATCTCTT
**
48891 TTTC--ACTC-TCAATCTCTT
1 TTTCTTTTTCTTCAATCTCTT
* *
48909 TTTGCTCTTT-TTCATTCTCTT
1 TTT-CTTTTTCTTCAATCTCTT
48930 TTTCTTTTTCTTCA
1 TTTCTTTTTCTTCA
48944 CTTTTTTAAC
Statistics
Matches: 59, Mismatches: 7, Indels: 18
0.70 0.08 0.21
Matches are distributed among these distances:
18 12 0.20
19 5 0.08
20 9 0.15
21 21 0.36
22 3 0.05
23 7 0.12
24 2 0.03
ACGTcount: A:0.11, C:0.24, G:0.01, T:0.64
Consensus pattern (21 bp):
TTTCTTTTTCTTCAATCTCTT
Found at i:48950 original size:18 final size:18
Alignment explanation
Indices: 48914--48949 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
48904 CTCTTTTTGC
*
48914 TCTTTTTCATTCTCTTTT
1 TCTTTTTCATTCACTTTT
48932 TCTTTTTC-TTCACTTTT
1 TCTTTTTCATTCACTTTT
48949 T
1 T
48950 TAACAGAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.06, C:0.22, G:0.00, T:0.72
Consensus pattern (18 bp):
TCTTTTTCATTCACTTTT
Found at i:51485 original size:23 final size:22
Alignment explanation
Indices: 51433--51485 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
51423 TCCACGTCTT
*
51433 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
51455 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
51478 TTTCTTTT
1 TTTCTTTT
51486 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:53191 original size:22 final size:22
Alignment explanation
Indices: 53163--53209 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
53153 CCTTTTTGAA
53163 CCCTTACCATTTCGTACCAAAT
1 CCCTTACCATTTCGTACCAAAT
*
53185 CCCTTACCATTTCGTACCAATT
1 CCCTTACCATTTCGTACCAAAT
53207 CCC
1 CCC
53210 AAATACCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.23, C:0.40, G:0.04, T:0.32
Consensus pattern (22 bp):
CCCTTACCATTTCGTACCAAAT
Found at i:55777 original size:17 final size:17
Alignment explanation
Indices: 55732--55779 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
55722 AGAAAAGAGC
* *
55732 GAAAATACAAAAGAAAA
1 GAAAATTCAAAAAAAAA
* *
55749 GAAAAATGAAAAAAAAA
1 GAAAATTCAAAAAAAAA
55766 GAAAATTCAAAAAA
1 GAAAATTCAAAAAA
55780 GAGAATGAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.77, C:0.04, G:0.10, T:0.08
Consensus pattern (17 bp):
GAAAATTCAAAAAAAAA
Found at i:59433 original size:18 final size:18
Alignment explanation
Indices: 59410--59445 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
59400 TGAAGGCGAG
59410 GCCCAAT-AAGCAAATCCA
1 GCCCAATCAAG-AAATCCA
59428 GCCCAATCAAGAAATCCA
1 GCCCAATCAAGAAATCCA
59446 TCCATACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.82
19 3 0.18
ACGTcount: A:0.44, C:0.33, G:0.11, T:0.11
Consensus pattern (18 bp):
GCCCAATCAAGAAATCCA
Found at i:63294 original size:12 final size:13
Alignment explanation
Indices: 63272--63300 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
63262 AAGTTTTATT
63272 TTTATTTTATTTA
1 TTTATTTTATTTA
63285 TTTA-TTTATTTA
1 TTTATTTTATTTA
63297 TTTA
1 TTTA
63301 CTTAGTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTATTTTATTTA
Done.