Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold381
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58640
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33
Found at i:431 original size:42 final size:42
Alignment explanation
Indices: 380--663 Score: 432
Period size: 42 Copynumber: 6.9 Consensus size: 42
370 GTTTACAAAC
* *
380 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
*
422 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
*
464 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
* *
506 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTGTA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
* * * *
547 AAAAATGCCACTAAAGACCATGTTCTTTAGCGGCGCTTAGGA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
*
589 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTA-AG
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
*
630 GAAAACGCCGCTAAA-AA-ATGTTCTTTAGCGGCGC
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGC
664 CGCTAAAGAT
Statistics
Matches: 225, Mismatches: 16, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
39 17 0.08
40 2 0.01
41 50 0.22
42 156 0.69
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
Found at i:479 original size:84 final size:84
Alignment explanation
Indices: 380--663 Score: 441
Period size: 83 Copynumber: 3.4 Consensus size: 84
370 GTTTACAAAC
* *
380 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGT
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
445 TCTTTAGCGGCGCTTAGAA
66 TCTTTAGCGGCGCTTAGAA
*
464 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
* *
529 TCTTTAGCGGCG-TTTGTA
66 TCTTTAGCGGCGCTTAGAA
* * *
547 AAAAATGCCACTAAAGACCATGTTCTTTAGCGGCGCTTAGGAAAAAACGCCGCTAAAGAACATGT
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
*
612 TCTTTAGCGGCGCTTA-AG
66 TCTTTAGCGGCGCTTAGAA
* *
630 GAAAACGCCGCTAAA-A-AATGTTCTTTAGCGGCGC
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGC
664 CGCTAAAGAT
Statistics
Matches: 183, Mismatches: 16, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
81 17 0.09
82 1 0.01
83 89 0.49
84 76 0.42
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (84 bp):
AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
TCTTTAGCGGCGCTTAGAA
Found at i:684 original size:28 final size:26
Alignment explanation
Indices: 635--690 Score: 85
Period size: 28 Copynumber: 2.1 Consensus size: 26
625 TTAAGGAAAA
635 CGCCGCTAAAAAATGTTCTTTAGCGG
1 CGCCGCTAAAAAATGTTCTTTAGCGG
*
661 CGCCGCTAAAGATCATGTTCTTTAGCGG
1 CGCCGCTAAA-A-AATGTTCTTTAGCGG
689 CG
1 CG
691 TTTTTTTTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 10 0.37
27 1 0.04
28 16 0.59
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27
Consensus pattern (26 bp):
CGCCGCTAAAAAATGTTCTTTAGCGG
Found at i:722 original size:43 final size:42
Alignment explanation
Indices: 661--786 Score: 164
Period size: 41 Copynumber: 3.0 Consensus size: 42
651 TCTTTAGCGG
* * * * *
661 CGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTTTTCTAAT
1 CGCCGCTAAAGAACATGTTCTTTAGTGGCGATTTTTTAC-AAA
704 CGCCGCTAAAGAACATGTTCTTTAGTGGC-ATTTTTTACAAA
1 CGCCGCTAAAGAACATGTTCTTTAGTGGCGATTTTTTACAAA
* * *
745 CGCCGCAAAAGAACATGTTCTTTAGTGGCGCTTTTATACAAA
1 CGCCGCTAAAGAACATGTTCTTTAGTGGCGATTTTTTACAAA
787 AACGCCACTA
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
41 30 0.41
42 17 0.23
43 27 0.36
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGTTCTTTAGTGGCGATTTTTTACAAA
Found at i:1168 original size:21 final size:21
Alignment explanation
Indices: 1100--1170 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
1090 TTTTGCTCTG
* *
1100 CTCTGCTTCTCTTGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* *
1121 CTCCGCTTCCCTCGCTGCAGT
1 CTCTGCTTCCCTCGCTGCAGC
* * *
1142 CGCTGCTTCCCTCGCTTCCGC
1 CTCTGCTTCCCTCGCTGCAGC
1163 CTCTGCTT
1 CTCTGCTT
1171 TAAGTTGTAG
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.03, C:0.45, G:0.18, T:0.34
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:6661 original size:11 final size:9
Alignment explanation
Indices: 6613--6904 Score: 80
Period size: 7 Copynumber: 34.0 Consensus size: 9
6603 AATTGCAATG
6613 GTAAGTTAT
1 GTAAGTTAT
6622 GTAAGTTAT
1 GTAAGTTAT
6631 GTAAGTTAAAT
1 GTAAGTT--AT
6642 GT-A-TTAT
1 GTAAGTTAT
6649 GTAAGTTAAAT
1 GTAAGTT--AT
6660 GTAAG-T-T
1 GTAAGTTAT
6667 GTAAGTTAT
1 GTAAGTTAT
*
6676 -TATGTATTAT
1 GTAAG--TTAT
6686 GTAAG-T-T
1 GTAAGTTAT
6693 GTAAGTTAAAT
1 GTAAGTT--AT
*
6704 GT-A-TTGT
1 GTAAGTTAT
6711 GTAAG-T-T
1 GTAAGTTAT
6718 GTAAGTTAAAT
1 GTAAGTT--AT
6729 GT-A-TTAT
1 GTAAGTTAT
6736 GTAAG-T-T
1 GTAAGTTAT
6743 GTAAGTTAT
1 GTAAGTTAT
*
6752 -TATGTATTAT
1 GTAAG--TTAT
6762 GTAAG-T-T
1 GTAAGTTAT
6769 GTAAGTTAT
1 GTAAGTTAT
* *
6778 -TATGTATTGT
1 GTAAG--TTAT
6788 GTAAG-T-T
1 GTAAGTTAT
6795 GTAAGTTAAAT
1 GTAAGTT--AT
6806 GT-A-TTAT
1 GTAAGTTAT
6813 GTAAG-T-T
1 GTAAGTTAT
6820 GTAAGTTACAT
1 GTAAGTT--AT
6831 GT-A-TTAT
1 GTAAGTTAT
6838 GTAAG-T-T
1 GTAAGTTAT
6845 GTAAGTTAAAT
1 GTAAGTT--AT
6856 GT-A-TTAT
1 GTAAGTTAT
6863 GTAAG-T-T
1 GTAAGTTAT
6870 GTAAGTTAT
1 GTAAGTTAT
*
6879 -TATGTATTAT
1 GTAAG--TTAT
6889 GTAAG-T-T
1 GTAAGTTAT
6896 GTAAGTTAT
1 GTAAGTTAT
6905 TATGTATTGT
Statistics
Matches: 215, Mismatches: 10, Indels: 116
0.63 0.03 0.34
Matches are distributed among these distances:
7 83 0.39
8 37 0.17
9 35 0.16
10 22 0.10
11 38 0.18
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:6692 original size:26 final size:25
Alignment explanation
Indices: 6658--7052 Score: 561
Period size: 26 Copynumber: 15.8 Consensus size: 25
6648 TGTAAGTTAA
6658 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-TATGTATT
*
6684 ATGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTATATGTATT
* *
6709 GTGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTATATGTATT
6734 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-TATGTATT
6760 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-TATGTATT
* *
6786 GTGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTATATGTATT
*
6811 ATGTAAGTTGTAAGTTACATGTATT
1 ATGTAAGTTGTAAGTTATATGTATT
*
6836 ATGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTATATGTATT
6861 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-TATGTATT
6887 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-TATGTATT
*
6913 GTGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-TATGTATT
6939 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-TATGTATT
* *
6965 GTGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTATATGTATT
*
6990 ATGTCAG-T-T-A---A-ATGTATT
1 ATGTAAGTTGTAAGTTATATGTATT
*
7008 ATGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTATATGTATT
*
7033 ATGTAAGTTGTAAGTAATAT
1 ATGTAAGTTGTAAGTTATAT
7053 AATTATTAAT
Statistics
Matches: 341, Mismatches: 19, Indels: 19
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.04
19 2 0.01
20 1 0.00
21 1 0.00
22 1 0.00
23 1 0.00
24 2 0.01
25 155 0.45
26 165 0.48
ACGTcount: A:0.32, C:0.01, G:0.21, T:0.47
Consensus pattern (25 bp):
ATGTAAGTTGTAAGTTATATGTATT
Found at i:7041 original size:18 final size:18
Alignment explanation
Indices: 6973--7016 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
6963 TTGTGTAAGT
6973 TGTAAGTTAAATGTATTA
1 TGTAAGTTAAATGTATTA
*
6991 TGTCAGTTAAATGTATTA
1 TGTAAGTTAAATGTATTA
7009 TGTAAGTT
1 TGTAAGTT
7017 GTAAGTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.34, C:0.02, G:0.18, T:0.45
Consensus pattern (18 bp):
TGTAAGTTAAATGTATTA
Found at i:7169 original size:73 final size:73
Alignment explanation
Indices: 7050--7345 Score: 583
Period size: 73 Copynumber: 4.1 Consensus size: 73
7040 TTGTAAGTAA
7050 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
7115 TATTTTTT
66 TATTTTTT
7123 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
7188 TATTTTTT
66 TATTTTTT
7196 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
7261 TATTTTTT
66 TATTTTTT
*
7269 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAGTATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
7334 TATTTTTT
66 TATTTTTT
7342 TATA
1 TATA
7346 TTTTATTTTA
Statistics
Matches: 222, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 222 1.00
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.51
Consensus pattern (73 bp):
TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
TATTTTTT
Found at i:7510 original size:13 final size:13
Alignment explanation
Indices: 7492--7562 Score: 106
Period size: 13 Copynumber: 5.5 Consensus size: 13
7482 ATTTATAATT
7492 ATTTAAGTAATAA
1 ATTTAAGTAATAA
* *
7505 ATTTAAGTAACAT
1 ATTTAAGTAATAA
7518 ATTTAAGTAATAA
1 ATTTAAGTAATAA
* *
7531 ATTTAAGTAACAT
1 ATTTAAGTAATAA
7544 ATTTAAGTAATAA
1 ATTTAAGTAATAA
7557 ATTTAA
1 ATTTAA
7563 ACAAATTTTA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 50 1.00
ACGTcount: A:0.51, C:0.03, G:0.07, T:0.39
Consensus pattern (13 bp):
ATTTAAGTAATAA
Found at i:7521 original size:26 final size:26
Alignment explanation
Indices: 7491--7562 Score: 144
Period size: 26 Copynumber: 2.8 Consensus size: 26
7481 TATTTATAAT
7491 TATTTAAGTAATAAATTTAAGTAACA
1 TATTTAAGTAATAAATTTAAGTAACA
7517 TATTTAAGTAATAAATTTAAGTAACA
1 TATTTAAGTAATAAATTTAAGTAACA
7543 TATTTAAGTAATAAATTTAA
1 TATTTAAGTAATAAATTTAA
7563 ACAAATTTTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (26 bp):
TATTTAAGTAATAAATTTAAGTAACA
Found at i:7589 original size:17 final size:17
Alignment explanation
Indices: 7567--7724 Score: 140
Period size: 17 Copynumber: 8.6 Consensus size: 17
7557 ATTTAAACAA
7567 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
7584 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
*
7601 ATTTTAGTAA-TAAATTT
1 ATTTTAGTAAGT-AATGT
7618 AAACAAATTTTAGTAAGTAATGT
1 ------ATTTTAGTAAGTAATGT
*
7641 ATTTTAGTAAGTAATAT
1 ATTTTAGTAAGTAATGT
*
7658 ATTTTAGTAA-TAAATTT
1 ATTTTAGTAAGT-AATGT
*
7675 AAACAAATTTTAGTAAGTAATTT
1 ------ATTTTAGTAAGTAATGT
7698 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
7715 ATTTTAGTAA
1 ATTTTAGTAA
7725 TAAATTTAAC
Statistics
Matches: 120, Mismatches: 5, Indels: 32
0.76 0.03 0.20
Matches are distributed among these distances:
16 2 0.02
17 87 0.73
23 29 0.24
24 2 0.02
ACGTcount: A:0.41, C:0.01, G:0.12, T:0.46
Consensus pattern (17 bp):
ATTTTAGTAAGTAATGT
Found at i:7613 original size:57 final size:57
Alignment explanation
Indices: 7534--7733 Score: 355
Period size: 57 Copynumber: 3.5 Consensus size: 57
7524 GTAATAAATT
* *
7534 TAAGTAACATATTTAAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
1 TAAGTAATATATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
*
7591 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
1 TAAGTAATATATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
*
7648 TAAGTAATATATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATTTATTTTAG
1 TAAGTAATATATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
*
7705 TAAGTAATGTATTTTAGTAATAAATTTAA
1 TAAGTAATATATTTTAGTAATAAATTTAA
7734 CATTCAATCG
Statistics
Matches: 137, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 137 1.00
ACGTcount: A:0.44, C:0.02, G:0.10, T:0.43
Consensus pattern (57 bp):
TAAGTAATATATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
Found at i:9083 original size:11 final size:11
Alignment explanation
Indices: 9067--9106 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
9057 GATGATAATA
9067 CATTAGTTACC
1 CATTAGTTACC
9078 CATTAGTTACC
1 CATTAGTTACC
*
9089 CACTAGTTACC
1 CATTAGTTACC
9100 CA-TAGTT
1 CATTAGTT
9107 TGAGATATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
10 5 0.18
11 23 0.82
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.35
Consensus pattern (11 bp):
CATTAGTTACC
Found at i:10197 original size:84 final size:83
Alignment explanation
Indices: 10090--10290 Score: 330
Period size: 84 Copynumber: 2.4 Consensus size: 83
10080 ATTAACACCG
10090 TTTTGTGGCGTTTTTGGTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACAACACCGTTT
1 TTTTGTGGCGTTTTT-G-AAAAACGCCACTAAATATTACAGCTGTGAACAGAAACAACACCGTTT
10155 TCGTGGTCTGGAATTGCATT
64 TCGTGGTCTGGAATTGCATT
*
10175 TTTTGTGGCGTTTTTAGAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTT
1 TTTTGTGGCGTTTTT-GAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACAACACCGTTTT
10240 CGTGGTCTGGAATTGCATT
65 CGTGGTCTGGAATTGCATT
* * *
10259 ATTTGTGGCATTTTCTTAAAAACGCCACTAAA
1 TTTTGTGGCGTTTT-TGAAAAACGCCACTAAA
10291 AGTTTAACTA
Statistics
Matches: 110, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
84 93 0.85
85 17 0.15
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (83 bp):
TTTTGTGGCGTTTTTGAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACAACACCGTTTTC
GTGGTCTGGAATTGCATT
Found at i:10693 original size:12 final size:12
Alignment explanation
Indices: 10676--10701 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
10666 TTAAAATAGC
10676 ACGACCTCTTTT
1 ACGACCTCTTTT
10688 ACGACCTCTTTT
1 ACGACCTCTTTT
10700 AC
1 AC
10702 AGTTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.35, G:0.08, T:0.38
Consensus pattern (12 bp):
ACGACCTCTTTT
Found at i:11561 original size:112 final size:112
Alignment explanation
Indices: 11314--11905 Score: 979
Period size: 112 Copynumber: 5.3 Consensus size: 112
11304 AACACCTAGA
* *
11314 TTAGCGGCGCTTTACAAAAAACGCCACTAA-TGCCCCCCCAAAGGACACAAAACGGCACCGTCTG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGT-CCCCCCCAAAGGCCACAAAACGGCACCGTCTG
* * * * * ** *
11378 GGAGTATTATTTGCGGCATTTTTTTATAAGCGCTGCTAATGTTCACTCT
65 GGTGTATTATTTGCGGC-GTTATCTATAAACGCCACTAATGCTCACTCT
11427 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
11492 GTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
66 GTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
**
11539 TTAGCGGCGCTTCGCAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
* *
11604 GTGTATTATTTGCGGCGTTATTTATAAACGCCGCTAATGCTCACTCT
66 GTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
* *
11651 TTAGCGGCGCTTTACAATAAATGCCACTAAGTCCCCCCCAAAGGCCACAAAACGACACCGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
11716 GTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
66 GTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
11763 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCCAAAGGCCACAAAACGGCACCGTCTG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGT-CCCCCCCAAAGGCCACAAAACGGCACCGTCTG
11828 GGTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
65 GGTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
* **
11876 TTAGCGGCGCTTTTCCTTAAACGCCACTAA
1 TTAGCGGCGCTTTACAATAAACGCCACTAA
11906 TGCTCACTCT
Statistics
Matches: 452, Mismatches: 25, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
112 269 0.60
113 182 0.40
114 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.25
Consensus pattern (112 bp):
TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
GTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
Found at i:11712 original size:224 final size:225
Alignment explanation
Indices: 11314--11905 Score: 999
Period size: 225 Copynumber: 2.6 Consensus size: 225
11304 AACACCTAGA
* * *
11314 TTAGCGGCGCTTTACAAAAAACGCCACTAA-TGCCCCCCCAAAGGACACAAAACGGCACCGTCTG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCCAAAGGCCACAAAACGGCACCGTCTG
* * * * * *
11378 GGAGTATTATTTGCGGCATTTTTTTATAAGCGCTGCTAATGTTCACTCTTTAGCGGCGCTTTACA
66 GGTGTATTATTTGCGGC-GTTATTTATAAACGCCGCTAATGCTCACTCTTTAGCGGCGCTTTACA
*
11443 ATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGGGTGTATTATTTGCGGC
130 ATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGACACCGTCTGGGTGTATTATTTGCGGC
11508 GTTATCTATAAACGCCACTAATGCTCACTCT
195 GTTATCTATAAACGCCACTAATGCTCACTCT
**
11539 TTAGCGGCGCTTCGCAATAAACGCCACTAAGT-CCCCCCCAAAGGCCACAAAACGGCACCGTCTG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCCAAAGGCCACAAAACGGCACCGTCTG
11603 GGTGTATTATTTGCGGCGTTATTTATAAACGCCGCTAATGCTCACTCTTTAGCGGCGCTTTACAA
66 GGTGTATTATTTGCGGCGTTATTTATAAACGCCGCTAATGCTCACTCTTTAGCGGCGCTTTACAA
*
11668 TAAATGCCACTAAGTCCCCCCCAAAGGCCACAAAACGACACCGTCTGGGTGTATTATTTGCGGCG
131 TAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGACACCGTCTGGGTGTATTATTTGCGGCG
11733 TTATCTATAAACGCCACTAATGCTCACTCT
196 TTATCTATAAACGCCACTAATGCTCACTCT
11763 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCCAAAGGCCACAAAACGGCACCGTCTG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCCAAAGGCCACAAAACGGCACCGTCTG
* * * **
11828 GGTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTTCCT
66 GGTGTATTATTTGCGGCGTTATTTATAAACGCCGCTAATGCTCACTCTTTAGCGGCGCTTTACAA
11893 TAAACGCCACTAA
131 TAAACGCCACTAA
11906 TGCTCACTCT
Statistics
Matches: 345, Mismatches: 20, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
224 166 0.48
225 178 0.52
226 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.25
Consensus pattern (225 bp):
TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCCAAAGGCCACAAAACGGCACCGTCTG
GGTGTATTATTTGCGGCGTTATTTATAAACGCCGCTAATGCTCACTCTTTAGCGGCGCTTTACAA
TAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGACACCGTCTGGGTGTATTATTTGCGGCG
TTATCTATAAACGCCACTAATGCTCACTCT
Found at i:11898 original size:40 final size:40
Alignment explanation
Indices: 11853--11969 Score: 198
Period size: 40 Copynumber: 2.9 Consensus size: 40
11843 GCGTTATCTA
**
11853 TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTTCCT
1 TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTTAAT
11893 TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTTAAT
1 TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTTAAT
* *
11933 TAAACGCCGCTATTGCTCACTCTTTAGCGGCGCTTTT
1 TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTT
11970 GCTCCAAACG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 73 1.00
ACGTcount: A:0.21, C:0.30, G:0.16, T:0.33
Consensus pattern (40 bp):
TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTTAAT
Found at i:13582 original size:21 final size:21
Alignment explanation
Indices: 13535--13584 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
13525 CATACGGGTG
* **
13535 GCCACACGGGCGTGTGCCTTG
1 GCCACACGGGCGTGTCCCTCA
* *
13556 GACACACGGTCGTGTCCCTCA
1 GCCACACGGGCGTGTCCCTCA
13577 GCCACACG
1 GCCACACG
13585 AGCATATGAG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.16, C:0.38, G:0.30, T:0.16
Consensus pattern (21 bp):
GCCACACGGGCGTGTCCCTCA
Found at i:25610 original size:3 final size:3
Alignment explanation
Indices: 25602--25635 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
25592 ATATAAAAGC
*
25602 AAT AAT AAT AAT AAT AAT AAT AAC AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
25636 TGAAATTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:27301 original size:44 final size:43
Alignment explanation
Indices: 27027--27304 Score: 201
Period size: 44 Copynumber: 6.5 Consensus size: 43
27017 GGACTGGATG
*
27027 CGATCTGCTCCACTACTGCTTAGGAAGATAAGATTTG-TGGT-TT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAAGA-TTGCT-GTCTT
** ** * * *
27070 TAATCTGCTCCACTACAACTTTAGGGAGATAGGATTGGTTTCTT
1 CGATCTGCTCCACTACTGC-TTAGGGAGATAAGATTGCTGTCTT
* * *
27114 CTG-TCTGCTCCACTATTGCTTAGGGAGACAAGACTTGATG----
1 C-GATCTGCTCCACTACTGCTTAGGGAGATAAGA-TTGCTGTCTT
* **
27154 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAAGAT-TGCTGTCTT
* ** * * * *
27198 CGACCTGCTCCACTACTGCTTAGGGAGATTTGACTGGTGGCCT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATTGCTGTCTT
** * * * *
27241 AAATCTACTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATT-GCTGTCTT
27285 CGATCTGCTCCACTACTGCT
1 CGATCTGCTCCACTACTGCT
27305 GTACAAGCCT
Statistics
Matches: 174, Mismatches: 49, Indels: 23
0.71 0.20 0.09
Matches are distributed among these distances:
39 2 0.01
40 30 0.17
43 60 0.34
44 82 0.47
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.32
Consensus pattern (43 bp):
CGATCTGCTCCACTACTGCTTAGGGAGATAAGATTGCTGTCTT
Found at i:30049 original size:44 final size:44
Alignment explanation
Indices: 29983--30655 Score: 721
Period size: 44 Copynumber: 15.4 Consensus size: 44
29973 GGTGTCAACA
* *
29983 ACTGCTTAGGGAGATAATATCTACCATCTTTGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
*
30027 ACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* ***** ** ** *
30071 ACTGCTTAGGGAGATAGGA-CTGGTGGCTTAAATTTGCTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* * * * * *
30114 ACTGCTTAGGAAGATAAGAT-TCGCCATTTTTGATCTACTCCACT
1 ACTGCTTAGGGAGATAAGATCT-ACCATCTTCGACCTGCTCCACT
30158 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
*
30202 ACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* ***** *** * * *
30246 ACTGCTTAGGGAGATAGGAT-TGGTGGCTAAAATCTGTTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* * *
30289 ACTGCTTAGGAAGATAAGAT-T-CGTCGTCTTCGATCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTAC--CATCTTCGACCTGCTCCACT
* * *
30333 ACTGCTTACGGAGATAATATCTACCATCTTCGACCTGCTCCGCT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* *
30377 ACTGCTTAGGGAGATAGGATCTACCATCTTCAACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* * ***** ** * *
30421 ACTGCTTAAGGAGATAGGA-CTGGTGGCTTAAATCTGCTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* * * *
30464 ACTGCTTAGGAAGATAAGAT-TCGCCGTCTTCGATCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCT-ACCATCTTCGACCTGCTCCACT
30508 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* * * *
30552 ACTACTTAGGGAGATAGGATCTACCATGTTCGACCTGCTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
30596 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
30640 ACTGCTTAGGGAGATA
1 ACTGCTTAGGGAGATA
30656 GGACTGGTGG
Statistics
Matches: 525, Mismatches: 94, Indels: 20
0.82 0.15 0.03
Matches are distributed among these distances:
43 96 0.18
44 425 0.81
45 3 0.01
46 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (44 bp):
ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
Found at i:30217 original size:131 final size:131
Alignment explanation
Indices: 29983--30611 Score: 440
Period size: 131 Copynumber: 4.8 Consensus size: 131
29973 GGTGTCAACA
* * * *
29983 ACTGCTTAGGGAGATAATATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGATC
1 ACTGCTTAGGAAGATAAGATCTACCATCTTTGACCTACTCCACTACTGCTTAGGGAGATAAGATC
30048 TACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATTTGCTTCAC
66 TACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATTTGCTTCAC
30113 T
131 T
* * *
30114 ACTGCTTAGGAAGATAAGAT-TCGCCATTTTTGATCTACTCCACTACTGCTTAGGGAGATAAGAT
1 ACTGCTTAGGAAGATAAGATCT-ACCATCTTTGACCTACTCCACTACTGCTTAGGGAGATAAGAT
***** ** ** *
30178 CTACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTCC
65 CTACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTGGCTTAAATTTGCTTC
30243 ACT
129 ACT
* * ***** *** * ** * *
30246 ACTGCTTAGGGAGATAGGAT-TGGTGGCTAAAATCTGTTTCACTACTGCTTAGGAAGATAAGAT-
1 ACTGCTTAGGAAGATAAGATCTACCATCTTTGACCTACTCCACTACTGCTTAGGGAGATAAGATC
* * * ** ***** ** ** *
30309 T-CGTCGTCTTCGATCTGCTCCACTACTGCTTACGGAGATAATATCTACCATCTTCGACCTGCTC
66 TAC--CATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTGGCTTAAATTTGCTT
*
30373 CGCT
128 CACT
* * ** * * *
30377 ACTGCTTAGGGAGATAGGATCTACCATCTTCAACCTGCTCCACTACTGCTTAAGGAGATAGGA-C
1 ACTGCTTAGGAAGATAAGATCTACCATCTTTGACCTACTCCACTACTGCTTAGGGAGATAAGATC
***** ** * * * * * ** * ** * *
30441 TGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCA
66 TACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACT-GGTGGCTTAAATTTGCTTCA
30506 CT
130 CT
* * * * *
30508 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACTACTACTTAGGGAGATAGGATC
1 ACTGCTTAGGAAGATAAGATCTACCATCTTTGACCTACTCCACTACTGCTTAGGGAGATAAGATC
* *
30573 TACCATGTTCGACCTGCTTCACTACTGCTTAGGGAGATA
66 TACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATA
30612 AGATCTACCA
Statistics
Matches: 411, Mismatches: 78, Indels: 17
0.81 0.15 0.03
Matches are distributed among these distances:
129 1 0.00
130 3 0.01
131 314 0.76
132 93 0.23
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (131 bp):
ACTGCTTAGGAAGATAAGATCTACCATCTTTGACCTACTCCACTACTGCTTAGGGAGATAAGATC
TACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATTTGCTTCAC
T
Found at i:30289 original size:175 final size:175
Alignment explanation
Indices: 29983--30611 Score: 1087
Period size: 175 Copynumber: 3.6 Consensus size: 175
29973 GGTGTCAACA
* *
29983 ACTGCTTAGGGAGATAATATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGATC
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGATC
*
30048 TACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATTTGCTTCAC
66 TACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCAC
* * * *
30113 TACTGCTTAGGAAGATAAGATTCGCCATTTTTGATCTACTCCACT
131 TACTGCTTAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACT
30158 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGATC
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGATC
* * *
30223 TACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGATTGGTGGCTAAAATCTGTTTCAC
66 TACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCAC
*
30288 TACTGCTTAGGAAGATAAGATTCGTCGTCTTCGATCTGCTCCACT
131 TACTGCTTAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACT
* * *
30333 ACTGCTTACGGAGATAATATCTACCATCTTCGACCTGCTCCGCTACTGCTTAGGGAGATAGGATC
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGATC
* *
30398 TACCATCTTCAACCTGCTCCACTACTGCTTAAGGAGATAGGACTGGTGGCTTAAATCTGCTTCAC
66 TACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCAC
30463 TACTGCTTAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACT
131 TACTGCTTAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACT
*
30508 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACTACTACTTAGGGAGATAGGATC
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGATC
* *
30573 TACCATGTTCGACCTGCTTCACTACTGCTTAGGGAGATA
66 TACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATA
30612 AGATCTACCA
Statistics
Matches: 426, Mismatches: 28, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
175 426 1.00
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (175 bp):
ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGATC
TACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCAC
TACTGCTTAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACT
Found at i:30381 original size:219 final size:217
Alignment explanation
Indices: 29983--30658 Score: 793
Period size: 219 Copynumber: 3.1 Consensus size: 217
29973 GGTGTCAACA
** *
29983 ACTGCTTAGGGAGATAATATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGATC
1 ACTGCTTAGGGAGATAGGATCTACCATCTTAGACCTGCTCCACTACTGCTTAGGGAGATAGGAT-
* * * * * * ** * *
30048 TACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGT-GGCTTAAATTTGCTTCA
65 TGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA-TCGTCGTCTTCGATCTGCTCCA
* * * * *
30112 CTACTGCTTAGGAAGATAAGAT-TCGCCATTTTTGATCTACTCCACTACTGCTTAGGGAGATAAG
129 CTACTGCTTAGG-AGATAAGATCT-ACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAAG
30176 ATCTACCATCTTCGACCTGCTCCACT
192 ATCTACCATCTTCGACCTGCTCCACT
*
30202 ACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGATT
1 ACTGCTTAGGGAGATAGGATCTACCATCTTAGACCTGCTCCACTACTGCTTAGGGAGATAGGATT
** * *** * * *
30267 GGTGGCTAAAATCTGTTTCACTACTGCTTAGGAAGATAAGATTCGTCGTCTTCGATCTGCTCCAC
66 GCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA-TCGTCGTCTTCGATCTGCTCCAC
* * *
30332 TACTGCTTACGGAGATAATATCTACCATCTTCGACCTGCTCCGCTACTGCTTAGGGAGATAGGAT
130 TACTGCTTA-GGAGATAAGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAAGAT
*
30397 CTACCATCTTCAACCTGCTCCACT
194 CTACCATCTTCGACCTGCTCCACT
* ***** * * * * *
30421 ACTGCTTAAGGAGATAGGA-CTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATT
1 ACTGCTTAGGGAGATAGGATCTACCATCTTAGACCTGCTCCACTACTGCTTAGGGAGATAGGATT
* *
30485 CGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATC-TACCATCTTCGACCTGCTCC
66 -GCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCGT--CGTCTTCGATCTGCTCC
* * * *
30549 ACTACTACTTAGGGAGATAGGATCTACCATGTTCGACCTGCTTCACTACTGCTTAGGGAGATAAG
128 ACTACTGCTTA-GGAGATAAGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAAG
30614 ATCTACCATCTTCGACCTGCTCCACT
192 ATCTACCATCTTCGACCTGCTCCACT
30640 ACTGCTTAGGGAGATAGGA
1 ACTGCTTAGGGAGATAGGA
30659 CTGGTGGCTT
Statistics
Matches: 386, Mismatches: 65, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
217 1 0.00
218 68 0.18
219 314 0.81
220 3 0.01
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (217 bp):
ACTGCTTAGGGAGATAGGATCTACCATCTTAGACCTGCTCCACTACTGCTTAGGGAGATAGGATT
GCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCGTCGTCTTCGATCTGCTCCACT
ACTGCTTAGGAGATAAGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAAGATCT
ACCATCTTCGACCTGCTCCACT
Found at i:31072 original size:175 final size:175
Alignment explanation
Indices: 30875--31240 Score: 563
Period size: 175 Copynumber: 2.1 Consensus size: 175
30865 AGTGTCTTGG
*
30875 ATCTACTCCACTGTAATCTCAGGGAGATAAGATCT-CTGGCTTCAACCTGCTCCACTGTAACCTC
1 ATCTACTCCACTGTAATCTCAGGGAGATAAGAT-TACTAGCTTCAACCTGCTCCACTGTAACCTC
* * *
30939 AGGGAGATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAATACCTGATG
65 AGGGAAATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGAAGATAAGACCTGATG
31004 CGATCTACTCAACTATAACTTCAGAGAGATAAGATCCTTTATTTTA
130 CGATCTACTCAACTATAACTTCAGAGAGATAAGATCCTTTATTTTA
* *
31050 ATCTACTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCA
1 ATCTACTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAACCTGCTCCACTGTAACCTCA
* * * *
31115 GGGAAATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGAAGATAAGACTTGATGT
66 GGGAAATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGAAGATAAGACCTGATGC
** * * *
31180 GATCTACTCTGCTGTAACTTCAGAGAGATTAGATCTTTTATTTTA
131 GATCTACTCAACTATAACTTCAGAGAGATAAGATCCTTTATTTTA
**
31225 ATCCGCTCCACTGTAA
1 ATCTACTCCACTGTAA
31241 CTTCAGGATA
Statistics
Matches: 173, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
174 1 0.01
175 172 0.99
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (175 bp):
ATCTACTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAACCTGCTCCACTGTAACCTCA
GGGAAATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGAAGATAAGACCTGATGC
GATCTACTCAACTATAACTTCAGAGAGATAAGATCCTTTATTTTA
Found at i:31312 original size:210 final size:210
Alignment explanation
Indices: 31050--31450 Score: 660
Period size: 210 Copynumber: 1.9 Consensus size: 210
31040 CTTTATTTTA
* *
31050 ATCTACTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCA
1 ATCTACTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAACCTGCTCCACTGTAACCTCA
* * * *
31115 GGGAAATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGAAGATAAGACTTGATGT
66 GGGAAATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGAAGATAAGACCTGATGC
* * * *
31180 GATCTACTCTGCTGTAACTTCAGAGAGATTAGATCTTTTATTTTAATCCGCTCCACTGTAACTTC
131 GATCTACTCTGCTATAACTTCAGAGAAATAAGATCTTTTATATTAATCCGCTCCACTGTAACTTC
31245 AGGATAGTGTCTTGG
196 AGGATAGTGTCTTGG
* *
31260 ATCTACTCCGCTGTAATCTCAGGGAGATAAGATCT-CTGGCTTCAACCTGCTCCACTGTAACCTC
1 ATCTACTCCACTGTAATCTCAGGGAGATAAGAT-TACTAGCTTCAACCTGCTCCACTGTAACCTC
* *
31324 AGGGAGATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATG
65 AGGGAAATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGAAGATAAGACCTGATG
31389 CGATCTACTCTGCTATAACTTCAGAGAAATAAGATCTTTTATATTAATCCGCTCCACTGTAA
130 CGATCTACTCTGCTATAACTTCAGAGAAATAAGATCTTTTATATTAATCCGCTCCACTGTAA
31451 TCTTAGAGAG
Statistics
Matches: 176, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
210 175 0.99
211 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (210 bp):
ATCTACTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAACCTGCTCCACTGTAACCTCA
GGGAAATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGAAGATAAGACCTGATGC
GATCTACTCTGCTATAACTTCAGAGAAATAAGATCTTTTATATTAATCCGCTCCACTGTAACTTC
AGGATAGTGTCTTGG
Found at i:31487 original size:175 final size:174
Alignment explanation
Indices: 31265--33464 Score: 1226
Period size: 175 Copynumber: 12.7 Consensus size: 174
31255 CTTGGATCTA
* * * *
31265 CTCCGCTGTAATCTCAGGGAGATAAGATCT-CTGGCTTCAACCTGCTCCACTGTAACCTCAGGGA
1 CTCCACTGTAATCTTAGGGAGATAAGAT-TACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGA
31329 GATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATC
65 GATAAGATCT-AAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATC
* * * *
31394 TACTCTGCTATAACTTCAGAGAAATAAGATCTTTTATATTAATCCG
129 TACTCTACTGTAACTTCAGAGAGATAAGATCTTTTATTTTAATCCG
* *
31440 CTCCACTGTAATCTTAGAGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
1 CTCCACTGTAATCTTAGGGAGATAAGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
* * *
31505 ATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGGTCT
66 ATAAGATCT-AAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCT
* * *
31570 ACTCTTCTGTAACTTCAGAGAGATGAGATCCTTTATTTTAATCCG
130 ACTCTACTGTAACTTCAGAGAGATAAGATCTTTTATTTTAATCCG
* * * * *
31615 CTCTACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCACTGTGACCTCAGGGAG
1 CTCCACTGTAATCTTAGGGAGATAAGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
* * *
31680 ATAAGATCTGAAATTTTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGATCT
66 ATAAGATCT-AAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCT
* *
31745 ACTCTACTGTAACTTCAGAGAGAGAAGATCCTTTATTTTAATCCG
130 ACTCTACTGTAACTTCAGAGAGATAAGATCTTTTATTTTAATCCG
* * * ** * *
31790 CTCCACTGTAA-CTTCAGAGAGATAGGA-TAGT-GTCTTGGATCTGCTCCGCTGTAATCTCAGGG
1 CTCCACTGTAATCTT-AGGGAGATAAGATTACTAG-CTTCAATCTGCTCCACTGTAACCTCAGGG
* * * * * * *
31852 AGATCAGATCT--CTGGCTTCAATCTGCTCCACAGTAACCTCAGGGAGATAAGATCTGAAATTCT
64 AGATAAGATCTAAAT-TCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTG--A---T
* * * * * * * *** **
31915 TCGGTCTACTCCATTGTAACCTT-AGGGAGATAAGA-C-ATGA-TGCGATCTA
123 GCGATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCTTTTATTTTAATCCG
** * * * * * *
31964 CTCTGCTGTAA-CTTCAGAGAGATAAGATCCT-TTA-TTTTAATCCGCTCCACTGTAACTTCA--
1 CTCCACTGTAATCTT-AGGGAGATAAGAT--TACTAGCTTCAATCTGCTCCACTGTAACCTCAGG
* * * * * * * *
32024 G-GAT-AG---T---GTCTTGGATCTACTCCGCTGTAATCTCAAGAAGATAAGATCTCTGGCTTC
63 GAGATAAGATCTAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGA-C-CT-GATGC
* * * * * *** * **
32081 AACCTGCT-TCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGATCTA
125 GATCTACTCT-ACTGTAACTTCAGAGAGATAAGATCTTTTATT-TT-AATCCG
* * * * * * * ** * * *
32133 CTCCACTGTAACCTCAGGGAGATAAGA--CCT-GATGCGATCTACTCTGCTATAACTTCAGAGAG
1 CTCCACTGTAATCTTAGGGAGATAAGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
** * ** * * * * * *
32195 ATAAGATCCTTTATT-TT-AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAA
66 ATAAGAT-CTAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGA--CCT-GATGCGA
* * * ** *
32258 TCTGCTCCACTGTAACATCA-AGGAGATAAGAT-TTGAAATTTT--TCGG
127 TCTACTCTACTGTAACTTCAGA-GAGATAAGATCTT-TTATTTTAATCCG
* * * * * * * ** * *
32304 TCTATTACACTGTAATCTCAGAGAGAT-A-A-TACCT-GATGCGATCTACTCTGCTATAACTTCA
1 -C---TCCACTGTAATCTTAGGGAGATAAGATTA-CTAGCTTCAATCTGCTCCACTGTAACCTCA
* ** * * * * *
32365 GAGAGATAAGATCCTTTATT-TT-AAT-TCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAG
61 GGGAGATAAGAT-CTAAATTCTTCGATCT-ACTCCACTGTAACCTCAGGGAGATAAGA--CCT-G
* * * * * * * * *** ** **
32427 CTTCAATCTGCTCCACTGTAACCTCAGGGATATAAGATCTAAAATTTTTCGGTCTA
121 ATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTTTTA-TTTT-AATCCG
** * * * * * * *
32483 CTCCACTGTAGCCTTAGGGAGATAAGA--CCT-GATGT-GATCTACTCTACTGTAACTTCAGAGA
1 CTCCACTGTAATCTTAGGGAGATAAGATTACTAGCT-TCAATCTGCTCCACTGTAACCTCAGGGA
** ** * ** * * ** *
32544 GAGGAGATCCTTTATT-TT-AATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTG-G
65 GATAAGAT-CTAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGA-CCTG--ATGCG
* * ** * * * * *** * *
32606 ATCTGCCCCGCTGTAATTTCAGGGAGATAAAATCTCTGGCTTCAATCTG
126 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCTTTTATTTTAATCCG
* * * * ** *
32655 CTCCACTGTAACCTAAGGGAGATAAGATCTGA-AATTCTTCGGTCTACTCCACTGTAACCTCAGG
1 CTCCACTGTAATCTTAGGGAGATAAGAT-T-ACTA-GCTTCAATCTGCTCCACTGTAACCTCAGG
** * ** * * * * **
32719 GAGATAAGA--T--ATGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTT
63 GAGATAAGATCTAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGA-C-CTGA-TGC
* * * * * ** *
32780 AAT-TCGCTCCACCGTAACTTC--AG-GAT-AGTGTCTTGGA-TCT-A----
125 GATCT-ACTCTACTGTAACTTCAGAGAGATAAG-ATCTTTTATTTTAATCCG
* * *
32821 CTCCGCTGTAATCTTAGGGAGATAAGATCT-CTGGCTTCAACCTGCTCCACTGTAACCTCAGGGA
1 CTCCACTGTAATCTTAGGGAGATAAGAT-TACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGA
32885 GATAAGATCTGAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATC
65 GATAAGATCT-AAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATC
* * * * *
32950 TAATCTGCTATAACTTCAAAGAGATAAGATCCTTTATTTTAATCCG
129 TACTCTACTGTAACTTCAGAGAGATAAGATCTTTTATTTTAATCCG
* * *
32996 CTCCTCTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
1 CTCCACTGTAATCTTAGGGAGATAAGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
33061 ATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCT
66 ATAAGATCT-AAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCT
* * * * *
33126 ACTCTGCTATAACTTCAGAGAAATAAGATCTTTTATATTAATTCG
130 ACTCTACTGTAACTTCAGAGAGATAAGATCTTTTATTTTAATCCG
* *
33171 CTCCACTGTAATCTTAGAGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
1 CTCCACTGTAATCTTAGGGAGATAAGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
* * * * *
33236 ATAAAATCTGAAATTTTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGGTCT
66 ATAAGATCT-AAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCT
* * *
33301 ACTCTACTGTAACTTCAGAGAGATGAGATCCTTTATTTTAATCTG
130 ACTCTACTGTAACTTCAGAGAGATAAGATCTTTTATTTTAATCCG
* * ** * *
33346 CTCCACTGTAA-CTTCAGGGAGATAGGA-TAGT-GTCTTGGATCTGCTCCGCTGTAATCTCAGGG
1 CTCCACTGTAATCTT-AGGGAGATAAGATTACTAG-CTTCAATCTGCTCCACTGTAACCTCAGGG
* * * * *
33408 AGATAAGATCT--CTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGA
64 AGATAAGATCTAAAT-TCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGA
33465 AATTCTTCGG
Statistics
Matches: 1644, Mismatches: 285, Indels: 195
0.77 0.13 0.09
Matches are distributed among these distances:
163 2 0.00
164 58 0.04
165 1 0.00
166 89 0.05
167 4 0.00
168 7 0.00
169 70 0.04
170 9 0.01
171 9 0.01
172 111 0.07
173 8 0.00
174 178 0.11
175 1023 0.62
176 12 0.01
177 57 0.03
178 4 0.00
179 2 0.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (174 bp):
CTCCACTGTAATCTTAGGGAGATAAGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
ATAAGATCTAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTA
CTCTACTGTAACTTCAGAGAGATAAGATCTTTTATTTTAATCCG
Found at i:31554 original size:560 final size:561
Alignment explanation
Indices: 30880--32018 Score: 1814
Period size: 560 Copynumber: 2.0 Consensus size: 561
30870 CTTGGATCTA
* *
30880 CTCCACTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAACCTGCTCCACTGTAACCTCAGGGAG
1 CTCCACTGTAATCTCAGAGAGATAAGATCTCTAGCTTCAACCTGCTCCACTGTAACCTCAGGGAG
*
30945 ATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAATACCTGATGCGATCT
66 ATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCT
*
31010 ACTCAACTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCTACTCCACTGTAATCTCAGGGA
131 ACTCAACTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCAGGGA
*
31075 GATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAAATAAGATCTGAAATTCTTCG
196 GATAGGATTACTAACTTCAATCTGCTCCACTGTAACCTCAGGGAAATAAGATCTGAAATTCTTCG
* * *
31140 GTCTACTCCACTGTAACCTCAGGAAGATAAGACTTGATGTGATCTACTCTGCTGTAACTTCAGAG
261 GTCTACTCCACTGTAACCTCAGGAAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAG
** *
31205 AGATTAGATCTTTTATTTTAATCCGCTCCACTGTAACTTC-AGGATAGTGTCTTGGATCTACTCC
326 AGAGAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAAGGATAGTGTCTTGGATCTACTCC
*
31269 GCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAACCTGCTCCACTGTAACCTCAGGGAGATAA
391 GCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAACCTGCTCCACAGTAACCTCAGGGAGATAA
*
31334 GATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTC
456 GATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACATGATGCGATCTACTC
*
31399 TGCTATAACTTCAGAGAAATAAGATCTTTTATATTAATCCG
521 TGCTATAACTTCAGAGAAATAAGATCCTTTATATTAATCCG
* * *
31440 CTCCACTGTAATCTTAGAGAGATAGGAT-TACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGA
1 CTCCACTGTAATCTCAGAGAGATAAGATCT-CTAGCTTCAACCTGCTCCACTGTAACCTCAGGGA
* * * *
31504 GATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGGTC
65 GATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATC
** * * * *
31569 TACTCTTCTGTAACTTCAGAGAGATGAGATCCTTTATTTTAATCCGCTCTACTGTAATCTCAGGG
130 TACTCAACTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCAGGG
* * *
31634 AGATAGGATTACTAACTTCAATCTGCTCCACTGTGACCTCAGGGAGATAAGATCTGAAATTTTTC
195 AGATAGGATTACTAACTTCAATCTGCTCCACTGTAACCTCAGGGAAATAAGATCTGAAATTCTTC
* *
31699 GGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGA
260 GGTCTACTCCACTGTAACCTCAGGAAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGA
31764 GAGAGAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATAGTGTCTTGGA
325 GAGAGAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTC------A-AGGATAGTGTCTTGGA
* * *
31829 TCTGCTCCGCTGTAATCTCAGGGAGATCAGATCTCTGGCTTCAATCTGCTCCACAGTAACCTCAG
383 TCTACTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAACCTGCTCCACAGTAACCTCAG
* * * *
31894 GGAGATAAGATCTGAAATTCTTCGGTCTACTCCATTGTAACCTTAGGGAGATAAGACATGATGCG
448 GGAGATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACATGATGCG
* * *
31959 ATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
513 ATCTACTCTGCTATAACTTCAGAGAAATAAGATCCTTTATATTAATCCG
32008 CTCCACTGTAA
1 CTCCACTGTAA
32019 CTTCAGGATA
Statistics
Matches: 528, Mismatches: 42, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
559 1 0.00
560 334 0.63
568 193 0.37
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (561 bp):
CTCCACTGTAATCTCAGAGAGATAAGATCTCTAGCTTCAACCTGCTCCACTGTAACCTCAGGGAG
ATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCT
ACTCAACTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCAGGGA
GATAGGATTACTAACTTCAATCTGCTCCACTGTAACCTCAGGGAAATAAGATCTGAAATTCTTCG
GTCTACTCCACTGTAACCTCAGGAAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAG
AGAGAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAAGGATAGTGTCTTGGATCTACTCC
GCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAACCTGCTCCACAGTAACCTCAGGGAGATAA
GATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACATGATGCGATCTACTC
TGCTATAACTTCAGAGAAATAAGATCCTTTATATTAATCCG
Found at i:31876 original size:218 final size:216
Alignment explanation
Indices: 31620--32245 Score: 964
Period size: 210 Copynumber: 2.9 Consensus size: 216
31610 ATCCGCTCTA
** *
31620 CTGTAATCTCAGGGAGATAGGAT-TACTAACTTCAATCTGCTCCACTGTGACCTCAGGGAGATAA
1 CTGTAATCTCAGGGAGATA-GATCT-CTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAA
* *
31684 GATCTGAAATTTTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGATCTACTC
64 GATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTC
* *
31749 TACTGTAACTTCAGAGAGAGAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATA
129 TGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAG-GAGATA
*
31814 GGATAGTGTCTTGGATCTGCTCCG
193 GGATAGTGTCTTGGATCTACTCCG
*
31838 CTGTAATCTCAGGGAGATCAGATCTCTGGCTTCAATCTGCTCCACAGTAACCTCAGGGAGATAAG
1 CTGTAATCTCAGGGAGAT-AGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAG
* * *
31903 ATCTGAAATTCTTCGGTCTACTCCATTGTAACCTTAGGGAGATAAGACATGATGCGATCTACTCT
65 ATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCT
31968 GCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTC-------AGG
130 GCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGAGATAGG
32026 ATAGTGTCTTGGATCTACTCCG
195 ATAGTGTCTTGGATCTACTCCG
* * * *
32048 CTGTAATCTCAAGAAGATAAGATCTCTGGCTTCAACCTGCTTCACTGTAACCTCAGGGAGATAAG
1 CTGTAATCTCAGGGAGAT-AGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAG
*
32113 ATCTGAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCT
65 ATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCT
*
32178 GCTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAA-TCTCAGGGAGATA
130 GCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACT-TCA-GGAGATA
32242 GGAT
193 GGAT
32246 TACTAGCTTC
Statistics
Matches: 374, Mismatches: 23, Indels: 22
0.89 0.05 0.05
Matches are distributed among these distances:
209 1 0.00
210 196 0.52
218 175 0.47
219 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (216 bp):
CTGTAATCTCAGGGAGATAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGA
TCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTG
CTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGAGATAGGA
TAGTGTCTTGGATCTACTCCG
Found at i:32554 original size:778 final size:778
Alignment explanation
Indices: 30730--33574 Score: 4412
Period size: 778 Copynumber: 3.7 Consensus size: 778
30720 TCTCCACCTT
* * *
30730 GGGAGATAAGATCTGAAATTCCTCGGTCTATTCCACTGTAATCTCAGAGAGATAAGACCTGATGC
1 GGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGAGAGATAAGACCTGATGC
* *
30795 GATCTACTCTGCTATAACTTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCAGTGTAA-CTT
66 GATCTACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATC-T
* ** * * *
30859 CA--G-GATA-G--T-GT--CTTGGATCTACTCCACTGTAATCTCAGGGAGATAAGATCT---CT
130 CAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT
** *** * * * * * *
30912 GGCTTCAACCTGCTCCACTGTAACCTCAGGGAGATAAGATCTAAAATTCTTCGATCTACTCCACT
195 -TTTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCT--GA---TGCGATCTACTCTACT
* * * * *** ** * * *
30977 GTAACCTCAGGGAGA-TA-ATACC-TGA-TGCGATCTACTCAACTATAACTTCAGAGAGATAAGA
254 GTAACTTCAGAGAGAGGAGAT-CCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGA
** * * ** * * * *
31038 TCCTTTATTTTAATCTACTCCACTGTAATCTCAGGGAGATAGGAT-TACTAGCTTCAATCTGCTC
318 TAGTGT-CTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT-CTGGCTTCAATCTGCTC
* *
31102 CACTGTAACCTCAGGGAAATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGAAGA
381 CACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGA
* * * *
31167 TAAGACTTGATGTGATCTACTCTGCTGTAACTTCAGAGAGATTAGATCTTTTATTTTAATCCGCT
446 TAAGACATGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCT
31232 CCACTGTAACTTCAGGATAGTGTCTTGGATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTCT
511 CCACTGTAACTTCAGGATAGTGTCTTGGATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTCT
*
31297 GGCTTCAACCTGCTCCACTGTAACCTCAGGGAGATAAGATCTAAAATTCTTCGATCTACTCCACT
576 GGCTTCAACCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGATCTACTCCACT
* *
31362 GTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTATAACTTCAGAGAAATAAGATCTT
641 GTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTATAACTTCAGAGAGATAAGATCCT
* * *
31427 TTATATTAATCCGCTCCACTGTAATCTTAGAGAGATAGGATTACTAGCTTCAATCTGCTCCACTG
706 TTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTG
31492 TAACCTCA
771 TAACCTCA
* *
31500 GGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGC
1 GGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGAGAGATAAGACCTGATGC
* * * * *
31565 GGTCTACTCTTCTGTAACTTCAGAGAGATGAGATCCTTTATTTTAATCCGCTCTACTGTAATCTC
66 GATCTACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
* *
31630 AGGGAGATAGGATTACTAACTTCAATCTGCTCCACTGTGACCTCAGGGAGATAAGATCTGAAATT
131 AGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATT
31695 TTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTT
196 TTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTT
*
31760 CAGAGAGAGAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATAGTGTCT
261 CAGAGAGAGGAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATAGTGTCT
* *
31825 TGGATCTGCTCCGCTGTAATCTCAGGGAGATCAGATCTCTGGCTTCAATCTGCTCCACAGTAACC
326 TGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACC
* *
31890 TCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCATTGTAACCTTAGGGAGATAAGACATGA
391 TCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACATGA
31955 TGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAAC
456 TGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAAC
* *
32020 TTCAGGATAGTGTCTTGGATCTACTCCGCTGTAATCTCAAGAAGATAAGATCTCTGGCTTCAACC
521 TTCAGGATAGTGTCTTGGATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAACC
*
32085 TGCTTCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGATCTACTCCACTGTAACCTCAG
586 TGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGATCTACTCCACTGTAACCTCAG
32150 GGAGATAAGACCTGATGCGATCTACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAAT
651 GGAGATAAGACCTGATGCGATCTACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAAT
*
32215 CCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACATCA
716 CCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCA
* * * * * * *
32278 AGGAGATAAGATTTGAAATTTTTCGGTCTATTACACTGTAATCTCAGAGAGATAATACCTGATGC
1 GGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGAGAGATAAGACCTGATGC
*
32343 GATCTACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAATTCGCTCCACTGTAATCTC
66 GATCTACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
* *
32408 AGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGATATAAGATCTAAAATT
131 AGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATT
* *
32473 TTTCGGTCTACTCCACTGTAGCCTTAGGGAGATAAGACCTGATGTGATCTACTCTACTGTAACTT
196 TTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTT
*
32538 CAGAGAGAGGAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCT
261 CAGAGAGAGGAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATAGTGTCT
* * *
32603 TGGATCTGCCCCGCTGTAATTTCAGGGAGATAAAATCTCTGGCTTCAATCTGCTCCACTGTAACC
326 TGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACC
* *
32668 TAAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGATATGA
391 TCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACATGA
* * *
32733 TGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTTAATTCGCTCCACCGTAAC
456 TGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAAC
*
32798 TTCAGGATAGTGTCTTGGATCTACTCCGCTGTAATCTTAGGGAGATAAGATCTCTGGCTTCAACC
521 TTCAGGATAGTGTCTTGGATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAACC
32863 TGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGATCTACTCCACTGTAACCTCAG
586 TGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGATCTACTCCACTGTAACCTCAG
* *
32928 GGAGATAAGACCTGATGCGATCTAATCTGCTATAACTTCAAAGAGATAAGATCCTTTATTTTAAT
651 GGAGATAAGACCTGATGCGATCTACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAAT
*
32993 CCGCTCCTCTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCA
716 CCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCA
* * *
33056 GGGAGATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGC
1 GGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGAGAGATAAGACCTGATGC
* * * * *
33121 GATCTACTCTGCTATAACTTCAGAGAAATAAGATCTTTTATATTAATTCGCTCCACTGTAATCTT
66 GATCTACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
* *
33186 AGAGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAAATCTGAAATT
131 AGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATT
*
33251 TTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGGTCTACTCTACTGTAACTT
196 TTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTT
* * *
33316 CAGAGAGATGAGATCCTTTATTTTAATCTGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCT
261 CAGAGAGAGGAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATAGTGTCT
33381 TGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACC
326 TGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACC
* *
33446 TCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTATAACCTCAGGGAGATAAGACCTGA
391 TCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACATGA
***
33511 TGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATATTCTCCACTGTAA
456 TGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAA
33575 TCTCAGGGAG
Statistics
Matches: 1907, Mismatches: 150, Indels: 28
0.91 0.07 0.01
Matches are distributed among these distances:
770 117 0.06
771 1 0.00
772 1 0.00
773 4 0.00
774 1 0.00
776 28 0.01
777 4 0.00
778 1649 0.86
779 68 0.04
781 33 0.02
782 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (778 bp):
GGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGAGAGATAAGACCTGATGC
GATCTACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
AGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATT
TTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTT
CAGAGAGAGGAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATAGTGTCT
TGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACC
TCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACATGA
TGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAAC
TTCAGGATAGTGTCTTGGATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAACC
TGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGATCTACTCCACTGTAACCTCAG
GGAGATAAGACCTGATGCGATCTACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAAT
CCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCA
Found at i:32654 original size:218 final size:219
Alignment explanation
Indices: 32392--33117 Score: 958
Period size: 210 Copynumber: 3.4 Consensus size: 219
32382 ATTTTAATTC
* * *
32392 GCTCCACTGTAATCTCAGGGAGATAGGAT-TACTAGCTTCAATCTGCTCCACTGTAACCTCAGGG
1 GCTCCGCTGTAATCTCAGGGAGATAAGATCTACTGGCTTCAATCTGCTCCACTGTAACCTCAGGG
* * * * * *
32456 ATATAAGATCTAAAATTTTTCGGTCTACTCCACTGTAGCCTTAGGGAGATAAGACCTGATGTGAT
66 AGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGAT
* **
32521 CTACTCTACTGTAACTTCAGAGAGAGGAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGG
131 CTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGG
32586 GAGATAGGATAGTGTCTTGGATCT
196 GAGATAGGATAGTGTCTTGGATCT
* * * *
32610 GCCCCGCTGTAATTTCAGGGAGATAAAATCT-CTGGCTTCAATCTGCTCCACTGTAACCTAAGGG
1 GCTCCGCTGTAATCTCAGGGAGATAAGATCTACTGGCTTCAATCTGCTCCACTGTAACCTCAGGG
**
32674 AGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGATATGATGCGAT
66 AGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGAT
* * *
32739 CTACTCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTTAATTCGCTCCACCGTAACTTC---
131 CTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGG
32801 -----AGGATAGTGTCTTGGATCT
196 GAGATAGGATAGTGTCTTGGATCT
* * *
32820 ACTCCGCTGTAATCTTAGGGAGATAAGATCT-CTGGCTTCAACCTGCTCCACTGTAACCTCAGGG
1 GCTCCGCTGTAATCTCAGGGAGATAAGATCTACTGGCTTCAATCTGCTCCACTGTAACCTCAGGG
*
32884 AGATAAGATCTGAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGAT
66 AGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGAT
* * * *
32949 CTAATCTGCTATAACTTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCTCTGTAA-TCTCAG
131 CTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACT-TCAG
* **
33013 GGAGATAGGATTACTAG-CTTCAATCT
195 GGAGATAGGA-TAGT-GTCTTGGATCT
* * * * * *
33039 GCTCCACTGTAACCTCAGGGAGATAAGATCTAAAAT-TCTTCGATCTACTCCACTGTAACCTCAG
1 GCTCCGCTGTAATCTCAGGGAGATAAGATCT--ACTGGCTTCAATCTGCTCCACTGTAACCTCAG
*
33103 GGAGATAAGACCTGA
64 GGAGATAAGATCTGA
33118 TGCGATCTAC
Statistics
Matches: 442, Mismatches: 51, Indels: 27
0.85 0.10 0.05
Matches are distributed among these distances:
209 1 0.00
210 191 0.43
218 172 0.39
219 38 0.09
220 1 0.00
221 38 0.09
222 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (219 bp):
GCTCCGCTGTAATCTCAGGGAGATAAGATCTACTGGCTTCAATCTGCTCCACTGTAACCTCAGGG
AGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGAT
CTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGG
GAGATAGGATAGTGTCTTGGATCT
Found at i:32665 original size:44 final size:44
Alignment explanation
Indices: 32062--33637 Score: 342
Period size: 44 Copynumber: 36.2 Consensus size: 44
32052 AATCTCAAGA
* * *
32062 AGATAAGATCTCTGGCTTCAACCTGCTTCACTGTAACCTCAGGG
1 AGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACTTCAGGG
* * * * *
32106 AGATAAGATCTGAAAT-TCTTCGATCTACTCCACTGTAACCTCAGGG
1 AGATAAGATCT---CTGGCTTCAATCTGCTCCACTGTAACTTCAGGG
* * * * ** * *
32152 AGATAAGA-C-CT-GATGCGATCTACTCTGCTATAACTTCAGAG
1 AGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACTTCAGGG
*** * *
32193 AGATAAGATC-CTTTATTTTAATCCGCTCCACTGTAA-TCTCAGGG
1 AGATAAGATCTC-TGGCTTCAATCTGCTCCACTGTAACT-TCAGGG
* * * *
32237 AGATAGGAT-TACTAGCTTCAATCTGCTCCACTGTAACATCAAGG
1 AGATAAGATCT-CTGGCTTCAATCTGCTCCACTGTAACTTCAGGG
** ** ** * *
32281 AGATAAGAT-T-TGAAATTTTTCGGTCTATTACACTGTAA-TCTCAGAG
1 AGATAAGATCTCTG----GCTTCAATCTGCTCCACTGTAACT-TCAGGG
* * * * * ** * *
32327 AGATAATA-C-CT-GATGCGATCTACTCTGCTATAACTTCAGAG
1 AGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACTTCAGGG
*** *
32368 AGATAAGATC-CTTTATTTTAAT-TCGCTCCACTGTAA-TCTCAGGG
1 AGATAAGATCTC-TGGCTTCAATCT-GCTCCACTGTAACT-TCAGGG
* * *
32412 AGATAGGAT-TACTAGCTTCAATCTGCTCCACTGTAACCTCAGGG
1 AGATAAGATCT-CTGGCTTCAATCTGCTCCACTGTAACTTCAGGG
* * ** ** * *
32456 ATATAAGATCTAAAAT-TTTTCGGTCTACTCCACTGTAGCCTT-AGGG
1 AGATAAGATCT---CTGGCTTCAATCTGCTCCACTGTA-ACTTCAGGG
* * * * *
32502 AGATAAGA-C-CT-GATGT-GATCTACTCTACTGTAACTTCAGAG
1 AGATAAGATCTCTGGCT-TCAATCTGCTCCACTGTAACTTCAGGG
** *** * *
32543 AGAGGAGATC-CTTTATTTTAATCCGCTCCACTGTAACTTCAGGG
1 AGATAAGATCTC-TGGCTTCAATCTGCTCCACTGTAACTTCAGGG
* ** * ** * * *
32587 AGATAGGAT-AGTGTCTTGGATCTGCCCCGCTGTAATTTCAGGG
1 AGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACTTCAGGG
* * *
32630 AGATAAAATCTCTGGCTTCAATCTGCTCCACTGTAACCTAAGGG
1 AGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACTTCAGGG
* * ** * *
32674 AGATAAGATCTGAAAT-TCTTCGGTCTACTCCACTGTAACCTCAGGG
1 AGATAAGATCT---CTGGCTTCAATCTGCTCCACTGTAACTTCAGGG
* * * * * ** *
32720 AGATAAGA--TAT-GATGCGATCTACTCTGCTGTAACTTCAGAG
1 AGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACTTCAGGG
*** * *
32761 AGATAAGATCAT-TTATTTTAAT-TCGCTCCACCGTAACTTCA--G
1 AGATAAGATC-TCTGGCTTCAATCT-GCTCCACTGTAACTTCAGGG
* * *
32803 -GAT-AG-TGTCTTGG-----ATCTACTCCGCTGTAATCTT-AGGG
1 AGATAAGATCTC-TGGCTTCAATCTGCTCCACTGTAA-CTTCAGGG
* *
32840 AGATAAGATCTCTGGCTTCAACCTGCTCCACTGTAACCTCAGGG
1 AGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACTTCAGGG
* * * * *
32884 AGATAAGATCTGAAAT-TCTTCGATCTACTCCACTGTAACCTCAGGG
1 AGATAAGATCT---CTGGCTTCAATCTGCTCCACTGTAACTTCAGGG
* * * ** ** * **
32930 AGATAAGA-C-CT-GATGCGATCTAATCTGCTATAACTTCAAAG
1 AGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACTTCAGGG
*** * * *
32971 AGATAAGATC-CTTTATTTTAATCCGCTCCTCTGTAA-TCTCAGGG
1 AGATAAGATCTC-TGGCTTCAATCTGCTCCACTGTAACT-TCAGGG
* * *
33015 AGATAGGAT-TACTAGCTTCAATCTGCTCCACTGTAACCTCAGGG
1 AGATAAGATCT-CTGGCTTCAATCTGCTCCACTGTAACTTCAGGG
* * * * *
33059 AGATAAGATCTAAAAT-TCTTCGATCTACTCCACTGTAACCTCAGGG
1 AGATAAGATCT---CTGGCTTCAATCTGCTCCACTGTAACTTCAGGG
* * * * ** * *
33105 AGATAAGA-C-CT-GATGCGATCTACTCTGCTATAACTTCAGAG
1 AGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACTTCAGGG
* *** * *
33146 AAATAAGATCT-TTTATATTAAT-TCGCTCCACTGTAATCTT-AGAG
1 AGATAAGATCTCTGGCT-TCAATCT-GCTCCACTGTAA-CTTCAGGG
* * *
33190 AGATAGGAT-TACTAGCTTCAATCTGCTCCACTGTAACCTCAGGG
1 AGATAAGATCT-CTGGCTTCAATCTGCTCCACTGTAACTTCAGGG
* * ** ** * * *
33234 AGATAAAATCTGAAAT-TTTTCGGTCTACTCCACTGTAGCCTCAGGG
1 AGATAAGATCT---CTGGCTTCAATCTGCTCCACTGTAACTTCAGGG
* * ** * * *
33280 AGATAAGA-C-CT-GATGCGGTCTACTCTACTGTAACTTCAGAG
1 AGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACTTCAGGG
* *** *
33321 AGATGAGATC-CTTTATTTTAATCTGCTCCACTGTAACTTCAGGG
1 AGATAAGATCTC-TGGCTTCAATCTGCTCCACTGTAACTTCAGGG
* ** * ** *
33365 AGATAGGAT-AGTGTCTTGGATCTGCTCCGCTGTAA-TCTCAGGG
1 AGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACT-TCAGGG
*
33408 AGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGG
1 AGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACTTCAGGG
* * ** * * *
33452 AGATAAGATCTGAAAT-TCTTCGGTCTACTCCACTATAACCTCAGGG
1 AGATAAGATCT---CTGGCTTCAATCTGCTCCACTGTAACTTCAGGG
* * * * ** *
33498 AGATAAGA-C-CT-GATGCGATCTACTCTGCTGTAACTTCAGAG
1 AGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACTTCAGGG
*** * * *
33539 AGATAAGATC-CTTTATTTTAATATTCTCCACTGTAA-TCTCAGGG
1 AGATAAGATCTC-TGGCTTCAATCTGCTCCACTGTAACT-TCAGGG
* * * * *
33583 AGATAGGAT-TACTAGCTTCAATCTACTCCACTGTAACCTCAGAG
1 AGATAAGATCT-CTGGCTTCAATCTGCTCCACTGTAACTTCAGGG
33627 AGATAAGATCT
1 AGATAAGATCT
33638 GAAATTCTTC
Statistics
Matches: 1117, Mismatches: 309, Indels: 211
0.68 0.19 0.13
Matches are distributed among these distances:
35 12 0.01
36 4 0.00
37 1 0.00
38 4 0.00
39 6 0.01
40 9 0.01
41 237 0.21
42 19 0.02
43 84 0.08
44 455 0.41
45 21 0.02
46 253 0.23
47 12 0.01
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (44 bp):
AGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACTTCAGGG
Found at i:33116 original size:953 final size:934
Alignment explanation
Indices: 31265--33418 Score: 2482
Period size: 953 Copynumber: 2.3 Consensus size: 934
31255 CTTGGATCTA
* * * *
31265 CTCCGCTGTAATCTCAGGGAGATAAGATCT-CTGGCTTCAACCTGCTCCACTGTAACCTCAGGGA
1 CTCCACTGTAATCTCAGGGAGATAGGAT-TACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGA
* * *
31329 GATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATC
65 GATAAGATCTGAAATTTTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATC
* * * * * *
31394 TACTCTGCTATAACTTCAGAGAAATAAGATCTTTTATATTAATCCGCTCCACTGTAATCTTAGAG
130 TACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAATTCGCTCCACTGTAATCTCAGGG
*
31459 AGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTC
195 AGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTAAAATTCTTC
* *
31524 GGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGGTCTACTCTTCTGTAACTTCAGA
260 GGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGA
* *
31589 GAGATGAGATCCTTTATTTTAATCCGCTCTACTGTAATCTCAGGGAGATAGGATTACTAACTTCA
325 GAGAGGAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCA
* * * ** ** *
31654 ATCTGCTCCACTGTGACCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTACTCCACTGTAGCCT
390 ATCTGCCCCACTGTAACCTCAGGGAGATAAAATCT--AATGCTTCAATCTACTCCACTGTAACCT
* * * * * *
31719 CAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGAGAAGATCCTTTATTTT
453 AAGGGAGATAAGACCTGATGCGATCTACTCCACTGTAACCTCAGAGAAAGAAGATCATCTATTTT
* * * * *
31784 AATCCGCTCCACTGTAACTTCAGAGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCA
518 AATCAGATACACTGTAAATTCAGAGAGATAGGATAGTGTCTTGGATCTACTCCGCTGTAATCTCA
* *
31849 GGGAGATCAGATCTCTGGCTTCAATCTGCTCCACAGTAACCTCAGGGAGATAAGATCTGAAATTC
583 GGGAGATAAGATCTCTGGCTTCAACCTGCTCCACAGTAACCTCAGGGAGATAAGATCTGAAATTC
* * * * *
31914 TTCGGTCTACTCCATTGTAACCTTAGGGAGATAAGACATGATGCGATCTACTCTGCTGTAACTTC
648 TTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACATGATGCGATCTAATCTGCTATAACTTC
* * * *
31979 AGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGATAGTGTCTTGGATCTAC
713 AAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGG--AGAGTATAGGATCTAC
* * * * * *
32044 TCCGCTGTAATCTCAAGAAGATAAGATCTCTGGCTTCAACCTGCTTCACTGTAACCTCAGGGAGA
776 TCAGCTGTAATCT-----AGAT---ACCACTGGC-TCAACC-GCTTCACGGGAA-CTCAGAGAGA
* *
32109 TAAGATCTGAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTA
830 TAAAATCT--AATTCATCGATCTA--CCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTA
* *
32174 CTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
891 CTCTGCTATAACTTCAGAGAAATAAGATCCTTTATATTAATCCG
* *
32218 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACATCAAGGAG
1 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
* * * * * *
32283 ATAAGATTTGAAATTTTTCGGTCTATTACACTGTAATCTCAGAGAGATAATACCTGATGCGATCT
66 ATAAGATCTGAAATTTTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCT
32348 ACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAATTCGCTCCACTGTAATCTCAGGGA
131 ACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAATTCGCTCCACTGTAATCTCAGGGA
* *
32413 GATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGATATAAGATCTAAAATTTTTCG
196 GATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTAAAATTCTTCG
* *
32478 GTCTACTCCACTGTAGCCTTAGGGAGATAAGACCTGATGTGATCTACTCTACTGTAACTTCAGAG
261 GTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAG
* ** **
32543 AGAGGAGATCCTTTATTTTAATCCGCTCCACTGTAA-CTTCAGGGAGATAGGA-TAGTGTCTTGG
326 AGAGGAGATCCTTTATTTTAATCCGCTCCACTGTAATC-TCAGGGAGATAGGATTACTAACTTCA
* ** * *
32606 ATCTGCCCCGCTGTAATTTCAGGGAGATAAAATCT-CTGGCTTCAATCTGCTCCACTGTAACCTA
390 ATCTGCCCCACTGTAACCTCAGGGAGATAAAATCTAAT-GCTTCAATCTACTCCACTGTAACCTA
* * *
32670 AGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGATATGATG
454 AGGGAGATAAGACCTG--A---TGCGATCTACTCCACTGTAACCTCA--GAGA-AAGA-A-GAT-
* *
32735 CGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTTAATTC-GCTCCACCGTA-AC
508 C-ATCTA-T-T--T-TAA--TC----AGAT-ACA-C-TGTA----AATTCAG----A--G-AGA-
*
32798 TTCAGGATAGTGTCTTGGATCTACTCCGCTGTAATCTTAGGGAGATAAGATCTCTGGCTTCAACC
546 -T-AGGATAGTGTCTTGGATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAACC
*
32863 TGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGATCTACTCCACTGTAACCTCAG
609 TGCTCCACAGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGATCTACTCCACTGTAACCTCAG
*
32928 GGAGATAAGACCTGATGCGATCTAATCTGCTATAACTTCAAAGAGATAAGATCCTTTATTTTAAT
674 GGAGATAAGACATGATGCGATCTAATCTGCTATAACTTCAAAGAGATAAGATCCTTTATTTTAAT
* *
32993 CCGCTCCTCTGTAA-TCTCAGG-GAG-ATAGGAT-TACT-AGCT-TCAATCT-GCT-CCACT-G-
739 CCGCTCCACTGTAACT-TCAGGAGAGTATAGGATCTACTCAGCTGT-AATCTAGATACCACTGGC
** * *
33048 T-AA-C-C-TCA-GGGAGA-T-A-AGATCTAAAAT-T-CTTCGATCTA-CT-CCACTGTAACCTC
802 TCAACCGCTTCACGGGA-ACTCAGAGAGATAAAATCTAATTC-ATCGATCTACCACTGTAACCTC
*
33101 AGGGAGATAAGACCTGATGCGATCTACTCTGCTATAACTTCAGAGAAATAAGATCTTTTATATTA
865 AGGGAGATAAGACCTGATGCGATCTACTCTGCTATAACTTCAGAGAAATAAGATCCTTTATATTA
*
33166 ATTCG
930 ATCCG
* *
33171 CTCCACTGTAATCTTAGAGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
1 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
* * *
33236 ATAAAATCTGAAATTTTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGGTCT
66 ATAAGATCTGAAATTTTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCT
* * *
33301 ACTCTACTGTAACTTCAGAGAGATGAGATCCTTTATTTTAA-TCTGCTCCACTGTAA-CTTCAGG
131 ACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAATTC-GCTCCACTGTAATC-TCAGG
* ** * *
33364 GAGATAGGA-TAGT-GTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT
194 GAGATAGGATTACTAG-CTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT
33419 CTGGCTTCAA
Statistics
Matches: 1033, Mismatches: 118, Indels: 101
0.83 0.09 0.08
Matches are distributed among these distances:
949 1 0.00
950 34 0.03
951 1 0.00
952 79 0.08
953 603 0.58
955 21 0.02
956 5 0.00
957 7 0.01
958 3 0.00
959 2 0.00
960 10 0.01
961 2 0.00
962 4 0.00
963 3 0.00
964 5 0.00
965 1 0.00
966 1 0.00
967 4 0.00
968 2 0.00
969 3 0.00
971 1 0.00
972 3 0.00
973 2 0.00
974 1 0.00
975 1 0.00
976 5 0.00
979 1 0.00
980 4 0.00
981 1 0.00
982 8 0.01
983 5 0.00
984 5 0.00
985 4 0.00
986 1 0.00
987 2 0.00
988 198 0.19
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (934 bp):
CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
ATAAGATCTGAAATTTTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCT
ACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAATTCGCTCCACTGTAATCTCAGGGA
GATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTAAAATTCTTCG
GTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAG
AGAGGAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAA
TCTGCCCCACTGTAACCTCAGGGAGATAAAATCTAATGCTTCAATCTACTCCACTGTAACCTAAG
GGAGATAAGACCTGATGCGATCTACTCCACTGTAACCTCAGAGAAAGAAGATCATCTATTTTAAT
CAGATACACTGTAAATTCAGAGAGATAGGATAGTGTCTTGGATCTACTCCGCTGTAATCTCAGGG
AGATAAGATCTCTGGCTTCAACCTGCTCCACAGTAACCTCAGGGAGATAAGATCTGAAATTCTTC
GATCTACTCCACTGTAACCTCAGGGAGATAAGACATGATGCGATCTAATCTGCTATAACTTCAAA
GAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGAGAGTATAGGATCTACTCAGC
TGTAATCTAGATACCACTGGCTCAACCGCTTCACGGGAACTCAGAGAGATAAAATCTAATTCATC
GATCTACCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTATAACTTCAGAGA
AATAAGATCCTTTATATTAATCCG
Found at i:33438 original size:218 final size:220
Alignment explanation
Indices: 33170--33637 Score: 712
Period size: 218 Copynumber: 2.1 Consensus size: 220
33160 ATATTAATTC
* *
33170 GCTCCACTGTAATCTTAGAGAGATAGGAT-TACTAGCTTCAATCTGCTCCACTGTAACCTCAGGG
1 GCTCCACTGTAATCTCAGAGAGATAAGATCTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGG
* * * *
33234 AGATAAAATCTGAAATTTTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGGT
66 AGATAAAATCTGAAATTCTTCGGTCTACTCCACTATAACCTCAGGGAGATAAGACCTGATGCGAT
* *
33299 CTACTCTACTGTAACTTCAGAGAGATGAGATCCTTTATTTTAATCTGCTCCACTGTAA-CTTCAG
131 CTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATATGCTCCACTGTAATC-TCAG
* **
33363 GGAGATAGGA-TAGT-GTCTTGGATCT
195 GGAGATAGGATTACTAG-CTTCAATCT
* * *
33388 GCTCCGCTGTAATCTCAGGGAGATAAGATCT-CTGGCTTCAATCTGCTCCACTGTAACCTCAGGG
1 GCTCCACTGTAATCTCAGAGAGATAAGATCTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGG
*
33452 AGATAAGATCTGAAATTCTTCGGTCTACTCCACTATAACCTCAGGGAGATAAGACCTGATGCGAT
66 AGATAAAATCTGAAATTCTTCGGTCTACTCCACTATAACCTCAGGGAGATAAGACCTGATGCGAT
* *
33517 CTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATATTCTCCACTGTAATCTCAGG
131 CTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATATGCTCCACTGTAATCTCAGG
33582 GAGATAGGATTACTAGCTTCAATCT
196 GAGATAGGATTACTAGCTTCAATCT
* *
33607 ACTCCACTGTAACCTCAGAGAGATAAGATCT
1 GCTCCACTGTAATCTCAGAGAGATAAGATCT
33638 GAAATTCTTC
Statistics
Matches: 225, Mismatches: 21, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
218 185 0.82
219 39 0.17
220 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (220 bp):
GCTCCACTGTAATCTCAGAGAGATAAGATCTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGG
AGATAAAATCTGAAATTCTTCGGTCTACTCCACTATAACCTCAGGGAGATAAGACCTGATGCGAT
CTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATATGCTCCACTGTAATCTCAGG
GAGATAGGATTACTAGCTTCAATCT
Found at i:34426 original size:222 final size:222
Alignment explanation
Indices: 34040--34485 Score: 883
Period size: 222 Copynumber: 2.0 Consensus size: 222
34030 ACATGATGTG
34040 AAATTCTTTGGTCCTTTATACCATTCTAATGATGTCATACCAAATGCTCATAAAAAATTTCTTCT
1 AAATTCTTTGGTCCTTTATACCATTCTAATGATGTCATACCAAATGCTCATAAAAAATTTCTTCT
34105 CCGAGGAAACCTCTTCCTATTGCCTGGTGATCATTGCTTGTTTGTTTATTTAAGCTTTGTCATTA
66 CCGAGGAAACCTCTTCCTATTGCCTGGTGATCATTGCTTGTTTGTTTATTTAAGCTTTGTCATTA
34170 ACACGACATCTTGTCATTTTTTTCAACCAATGCATTTGACAACAAAATCCAAAGAGAAAGTCCAA
131 ACACGACATCTTGTCATTTTTTTCAACCAATGCATTTGACAACAAAATCCAAAGAGAAAGTCCAA
*
34235 ACTTAGACTCTTCGTTCTCAAATTTCT
196 ACTTAGACTCTTCCTTCTCAAATTTCT
34262 AAATTCTTTGGTCCTTTATACCATTCTAATGATGTCATACCAAATGCTCATAAAAAATTTCTTCT
1 AAATTCTTTGGTCCTTTATACCATTCTAATGATGTCATACCAAATGCTCATAAAAAATTTCTTCT
34327 CCGAGGAAACCTCTTCCTATTGCCTGGTGATCATTGCTTGTTTGTTTATTTAAGCTTTGTCATTA
66 CCGAGGAAACCTCTTCCTATTGCCTGGTGATCATTGCTTGTTTGTTTATTTAAGCTTTGTCATTA
34392 ACACGACATCTTGTCATTTTTTTCAACCAATGCATTTGACAACAAAATCCAAAGAGAAAGTCCAA
131 ACACGACATCTTGTCATTTTTTTCAACCAATGCATTTGACAACAAAATCCAAAGAGAAAGTCCAA
34457 ACTTAGACTCTTCCTTCTCAAATTTCT
196 ACTTAGACTCTTCCTTCTCAAATTTCT
34484 AA
1 AA
34486 CCTTTAAATT
Statistics
Matches: 223, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
222 223 1.00
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.37
Consensus pattern (222 bp):
AAATTCTTTGGTCCTTTATACCATTCTAATGATGTCATACCAAATGCTCATAAAAAATTTCTTCT
CCGAGGAAACCTCTTCCTATTGCCTGGTGATCATTGCTTGTTTGTTTATTTAAGCTTTGTCATTA
ACACGACATCTTGTCATTTTTTTCAACCAATGCATTTGACAACAAAATCCAAAGAGAAAGTCCAA
ACTTAGACTCTTCCTTCTCAAATTTCT
Found at i:36111 original size:12 final size:12
Alignment explanation
Indices: 36042--36118 Score: 50
Period size: 12 Copynumber: 6.4 Consensus size: 12
36032 TCTTTTTCTC
* *
36042 ATTTTCATTTTC
1 ATTTTGATTTTT
* *
36054 ATTTTGATCTTG
1 ATTTTGATTTTT
36066 ATTTTGATTTTT
1 ATTTTGATTTTT
* **
36078 -TCTTCTTTTTT
1 ATTTTGATTTTT
*
36089 CTTTTTG-TTTTT
1 -ATTTTGATTTTT
36101 ATTTTGATTTTT
1 ATTTTGATTTTT
36113 GATTTT
1 -ATTTT
36119 TTTTCTTTTT
Statistics
Matches: 50, Mismatches: 11, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
11 13 0.26
12 29 0.58
13 8 0.16
ACGTcount: A:0.12, C:0.08, G:0.08, T:0.73
Consensus pattern (12 bp):
ATTTTGATTTTT
Found at i:36129 original size:18 final size:18
Alignment explanation
Indices: 36067--36133 Score: 53
Period size: 21 Copynumber: 3.4 Consensus size: 18
36057 TTGATCTTGA
36067 TTTTGATTTTTTCTTCTTT
1 TTTTGATTTTTT-TTCTTT
** *
36086 TTTCTTTTTGTTTTTATTTTGAT
1 TTT-TGATT-TTTTT-TCTT--T
36109 TTTTGATTTTTTTTCTTT
1 TTTTGATTTTTTTTCTTT
36127 TTTTGAT
1 TTTTGAT
36134 CTGAGCCTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 11
0.69 0.11 0.20
Matches are distributed among these distances:
18 8 0.22
19 3 0.08
20 7 0.19
21 12 0.32
22 3 0.08
23 4 0.11
ACGTcount: A:0.07, C:0.06, G:0.07, T:0.79
Consensus pattern (18 bp):
TTTTGATTTTTTTTCTTT
Found at i:39800 original size:26 final size:26
Alignment explanation
Indices: 39771--39823 Score: 52
Period size: 26 Copynumber: 2.0 Consensus size: 26
39761 CATAACAAAT
* ** *
39771 AAATAAATAAATAAACTAAAACATAA
1 AAATAAACAAATAAATAAATACATAA
* *
39797 AAATAGACATATAAATAAATACATAA
1 AAATAAACAAATAAATAAATACATAA
39823 A
1 A
39824 TGAACATAAA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.70, C:0.08, G:0.02, T:0.21
Consensus pattern (26 bp):
AAATAAACAAATAAATAAATACATAA
Found at i:40692 original size:16 final size:15
Alignment explanation
Indices: 40671--40718 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
40661 GATGTGAATA
40671 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
*
40687 ATAAAATATTAAACT
1 ATAAAATATTAAAAT
*
40702 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
40718 A
1 A
40719 ATAATAATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
15 7 0.25
16 21 0.75
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:40694 original size:24 final size:24
Alignment explanation
Indices: 40667--40722 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
40657 TAATGATGTG
*
40667 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* * *
40691 AATATTAAACTATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
40715 AATAATAA
1 AATAATAA
40723 TAATTAATAC
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 6 0.23
24 20 0.77
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:40933 original size:22 final size:24
Alignment explanation
Indices: 40870--40934 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
40860 CGTGATAATA
*
40870 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
40895 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
40918 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
40935 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:40981 original size:25 final size:24
Alignment explanation
Indices: 40953--41082 Score: 94
Period size: 23 Copynumber: 5.6 Consensus size: 24
40943 GTAAAAAAAT
*
40953 ATATATAAATAATATAATATTAAAG
1 ATATATACATAATATAATATT-AAG
* * *
40978 ATATATACATAAAATAGTA-TAAT
1 ATATATACATAATATAATATTAAG
*
41001 ATATATACGTAATATAGA-ATTTAA-
1 ATATATACATAATATA-ATA-TTAAG
* * *
41025 A-ATATACCTAATATATTA-AAAG
1 ATATATACATAATATAATATTAAG
*
41047 A-ATATATATAATATAATATTAAG
1 ATATATACATAATATAATATTAAG
*
41070 AAATATA-ATAATA
1 ATATATACATAATA
41083 ACAAAAAAAA
Statistics
Matches: 84, Mismatches: 14, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
21 2 0.02
22 15 0.18
23 41 0.49
24 7 0.08
25 19 0.23
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (24 bp):
ATATATACATAATATAATATTAAG
Found at i:41606 original size:30 final size:30
Alignment explanation
Indices: 41570--41684 Score: 185
Period size: 30 Copynumber: 3.8 Consensus size: 30
41560 TAGGTACAAG
* *
41570 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
41600 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
41630 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
41660 TGGTGGTGGAAAAGGAGTGACTAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGT
41685 TGAGAAAAGT
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 78 1.00
ACGTcount: A:0.23, C:0.03, G:0.49, T:0.25
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
Found at i:43166 original size:23 final size:23
Alignment explanation
Indices: 43140--43190 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
43130 ACCTACTTTC
* *
43140 TTACTGTAGTAATTTTCGGGGTA
1 TTACAGTAGTAATTTTCGGGATA
43163 TTACAGTAGTAATTTTCGGGATA
1 TTACAGTAGTAATTTTCGGGATA
43186 TTACA
1 TTACA
43191 TGTTCCCTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.27, C:0.10, G:0.22, T:0.41
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCGGGATA
Found at i:46050 original size:44 final size:44
Alignment explanation
Indices: 45980--46787 Score: 776
Period size: 44 Copynumber: 18.4 Consensus size: 44
45970 GGATAGATTG
* * *
45980 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGCGTGAAGT
* * * *
46024 AGATCGAAGATATCAGATCCTATCTTCCTATATTGGTAG-GAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGG-CGTGAAGT
* * * *
46068 GGATCGAAGA-GGCAGATCTTGTCTTCCCATATTGGTGGTGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGG-CGTGAAGT
* * *
46112 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGCGTGAAGT
* * * *
46156 AGATCGAAGATATCAGATCCTATCTTCCTATATTGGTAG-GAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGG-CGTGAAGT
* * * *
46200 GGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGG-CGTGAAGT
* * ** *
46244 AGATCGAAGAAAGCAGATCTTGTCTTCATGCATTAGCGTGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGCGTGAAGT
* * *
46288 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGCGTGAAGT
* * * * *
46332 AGATCGAAGATATCAGATCCTATTTTCCTATATTGGTAG-GAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGG-CGTGAAGT
* * ** * *
46376 GGATCGAAGAT-GCAGATCTTGTCTTCATGCATTAGCATGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGCGTGAAGT
* *
46419 AGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGTGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGG-CGTGAAGT
* * * *
46463 AGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCGTGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGCGTGAAGT
* * *
46507 AGATCGAAGATATCAGATCCTATCTTCCTATATTGGC--GAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGCGTGAAGT
* * ** * *
46549 AGATCGAAGAAAGCAGATCTTGTCTTCATGCATTAGCTTGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGCGTGAAGT
* *
46593 AGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGTGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGG-CGTGAAGT
* * *
46637 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGCGTGAAGT
* * * *
46681 AGATCGAAGATACCAGATCCTATCTTCCTATATTGGTAG-GAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGG-CGTGAAGT
* * * * * * * * *
46725 GGACCGACGAT-GCAGATTTTGTTTTCCCATACTGGTGGTGAAGA
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGG-CGTGAAGT
*
46769 AGATCGAAGAAAGCAGATC
1 AGATCGAAGATAGCAGATC
46788 GACGATGGCG
Statistics
Matches: 618, Mismatches: 129, Indels: 33
0.79 0.17 0.04
Matches are distributed among these distances:
42 34 0.06
43 132 0.21
44 361 0.58
45 91 0.15
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (44 bp):
AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGCGTGAAGT
Found at i:46217 original size:132 final size:132
Alignment explanation
Indices: 45980--46787 Score: 1002
Period size: 132 Copynumber: 6.1 Consensus size: 132
45970 GGATAGATTG
*
45980 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATATCAGATCCT
1 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCT
* *
46045 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGAGGCAGATCTTGTCTTCCCATATTGGTGGTGAA
66 ATCTTCCTATATTGGTAGGAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGTGAA
46110 GT
131 GT
*
46112 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATATCAGATCCT
1 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCT
* *
46177 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
66 ATCTTCCTATATTGGTAGGAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGTGAA
46242 GT
131 GT
* * * *
46244 AGATCGAAGAAAGCAGATCTTGTCTTCATGCATTAGCGTGAAGTAGATCGAAGAAAGCAGATCTT
1 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCT
* * * * * * * * * *
46309 GTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATATCAGATCCTATTTTCCTATATTGGTAG-G
66 ATCTTCCTATATTGGTAG-GAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGTG
46372 AAGT
129 AAGT
* * * * * *
46376 GGATCGAAG-ATGCAGATCTTGTCTTCATGCATTAGCATGAAGTAGATCGAAGAT-GCAGATCTT
1 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCT
* * * * * *** *
46439 GTCTTCCCATATTGGTGGTGAAGTAGATCGAAGAAAGCAGATATTGTCTTCATGTATTGG-CGTG
66 ATCTTCCTATATTGGTAG-GAAGTAGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGTGGTG
46503 AAGT
129 AAGT
* * * * * * * *
46507 AGATCGAAGATATCAGATCCTATCTTCCTATATTGGC--GAAGTAGATCGAAGAAAGCAGATCTT
1 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCT
* * ** * *
46570 GTCTTCATGCATTAGCT-TGAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGTGA
66 ATCTTCCTATATT-GGTAGGAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGTGA
46634 AGT
130 AGT
*
46637 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATACCAGATCCT
1 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCT
* * * * * *
46702 ATCTTCCTATATTGGTAGGAAGTGGACCGACGATGCAGATTTTGTTTTCCCATACTGGTGGTGAA
66 ATCTTCCTATATTGGTAGGAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGTGAA
*
46767 GA
131 GT
46769 AGATCGAAGAAAGCAGATC
1 AGATCGAAGAAAGCAGATC
46788 GACGATGGCG
Statistics
Matches: 584, Mismatches: 80, Indels: 24
0.85 0.12 0.03
Matches are distributed among these distances:
129 21 0.04
130 89 0.15
131 109 0.19
132 344 0.59
133 21 0.04
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (132 bp):
AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCT
ATCTTCCTATATTGGTAGGAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGTGAA
GT
Found at i:47311 original size:21 final size:22
Alignment explanation
Indices: 47270--47326 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 22
47260 AAACCCAACT
*
47270 AACCTAGCCCAATACCCTAAACC
1 AACCTAGCCCAATA-CCTAAAAC
47293 AACCTAGCCCAAT-CCTAAAAC
1 AACCTAGCCCAATACCTAAAAC
*
47314 TACCTGAGCCCAA
1 AACCT-AGCCCAA
47327 ATTTTAAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 11 0.35
22 7 0.23
23 13 0.42
ACGTcount: A:0.39, C:0.40, G:0.07, T:0.14
Consensus pattern (22 bp):
AACCTAGCCCAATACCTAAAAC
Done.