Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1162
Parameters: 2 7 7 80 10 50 1000
Length:  54900

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4590--4644
24
2.2
26
81
12
71
45
0
1
52
1.11
4857--4892
16
2.2
16
100
0
72
38
36
0
25
1.56
18517--18619
43
2.4
43
81
0
125
38
28
13
19
1.90
22175--22201
14
1.9
14
100
0
54
14
11
22
51
1.73
22321--22355
16
2.1
17
94
5
63
68
5
0
25
1.11
22404--22449
22
2.1
22
83
0
56
41
2
0
56
1.11
22469--22526
16
3.4
16
85
9
71
46
3
5
44
1.42
22458--22513
26
2.2
26
86
0
76
50
3
5
41
1.43
23640--23830
7
26.9
7
69
16
72
41
36
0
21
1.57
23641--23773
50
2.7
50
82
2
142
41
37
0
21
1.53
23728--23773
22
2.1
22
83
0
56
43
34
0
21
1.53
23640--23830
15
13.4
14
71
14
70
41
36
0
21
1.57
23847--23894
14
3.6
14
72
11
55
43
2
2
52
1.24
24023--24341
154
2.1
154
82
5
396
30
20
18
30
1.97
24254--24420
40
4.2
40
78
4
176
25
20
22
31
1.98
24254--24420
79
2.1
80
83
5
205
25
20
22
31
1.98
28150--28181
16
2.0
16
93
0
55
25
15
0
59
1.36
28311--28404
45
2.1
45
89
0
143
29
24
19
26
1.98
28399--28596
51
3.9
50
75
9
195
30
26
16
25
1.97
28408--28592
101
1.8
101
87
5
275
31
26
16
24
1.96
28403--28626
101
2.2
101
80
5
256
30
27
15
25
1.96
31276--31531
130
2.0
130
90
1
406
21
21
7
48
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40735--40786
27
1.9
27
88
7
79
28
0
5
65
1.16
40742--40803
26
2.4
26
81
7
65
33
0
4
61
1.17
44108--44146
16
2.4
17
83
16
55
12
5
5
76
1.11

Tables:   1

The End!