genome.fa.s949.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold183
Parameters: 2 7 7 80 10 50 1000
Length:  216225

Tables:   1   

This is table  1  of  1  ( 101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12534--12560	14	1.9	14	100	0	54	33	22	14	29	1.94
15918--15964	24	1.9	24	86	4	67	10	19	0	70	1.16
19155--19181	14	1.9	14	100	0	54	33	22	14	29	1.94
22461--22495	17	1.9	19	88	11	56	11	8	2	77	1.10
25982--26021	21	1.9	21	89	0	62	17	30	7	45	1.76
26058--26116	21	2.8	21	74	20	61	10	22	0	67	1.20
26726--26760	18	1.9	18	88	0	52	54	20	5	20	1.64
27176--27208	14	2.5	13	90	9	57	12	3	6	78	1.04
30801--30837	17	2.1	18	90	5	58	48	10	0	40	1.38
32979--33024	15	3.2	14	85	11	58	13	17	0	69	1.19
35496--35529	13	2.6	13	100	0	68	17	0	5	76	0.98
35496--35534	12	3.2	12	85	7	51	20	2	5	71	1.17
38249--38372	29	4.3	29	77	4	124	24	24	12	38	1.90
38447--38476	12	2.5	12	100	0	60	50	6	6	36	1.55
40511--40773	120	2.2	119	82	4	316	26	28	20	24	1.99
40511--40720	40	5.3	40	92	0	314	26	29	20	23	1.99
40514--40773	80	3.3	80	86	3	267	25	28	21	24	1.99
40705--40782	40	1.9	41	82	10	97	26	28	21	23	1.99
48453--48715	40	6.6	40	87	3	316	26	27	20	24	1.99
48647--48724	40	1.9	41	82	10	97	26	28	21	23	1.99
54290--54347	25	2.3	25	87	0	80	24	25	20	29	1.99
55383--55432	26	1.9	26	84	8	66	30	8	32	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55908--55945	7	5.4	7	90	0	58	47	18	0	34	1.49
60549--60588	20	2.0	20	85	0	53	22	20	10	47	1.79
65235--65273	20	2.0	20	89	0	60	23	20	12	43	1.86
65217--65286	20	3.5	20	80	0	59	25	24	11	38	1.89
66678--66972	146	2.0	146	95	0	536	28	20	21	29	1.98
78604--78668	20	3.3	19	73	16	51	38	16	21	23	1.93
85432--85488	10	5.6	10	79	4	60	31	14	24	29	1.94
85428--85488	20	3.1	19	84	13	70	34	13	22	29	1.92
91489--91536	20	2.4	20	67	0	51	33	18	27	20	1.96
93175--93206	12	2.7	12	95	0	55	18	21	0	59	1.38
93199--93248	14	3.6	13	78	21	57	8	18	0	74	1.06
93188--93249	14	4.6	13	76	18	56	11	19	0	69	1.18
93188--93249	27	2.3	27	86	10	83	11	19	0	69	1.18
93210--93317	6	17.7	6	69	9	67	6	17	3	72	1.21
94376--94414	10	3.8	10	86	6	51	7	7	2	82	0.94
94501--94531	12	2.6	12	94	0	53	6	3	6	83	0.88
95722--95766	21	2.1	22	83	4	56	53	11	0	35	1.37
98916--98961	12	3.7	13	82	8	60	73	8	4	13	1.21
99000--99048	13	3.8	13	92	7	82	71	0	10	18	1.13
98997--99048	27	2.0	26	96	3	95	67	0	11	21	1.22
103203--103253	21	2.4	22	83	6	61	7	21	1	68	1.25
103215--103256	22	2.0	22	86	13	61	9	19	0	71	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107301--107365	20	3.3	19	75	16	69	36	10	27	24	1.89
115234--115267	17	2.0	17	94	0	59	14	8	0	76	1.01
115237--115282	21	2.2	20	88	3	65	8	6	2	82	0.91
115242--115284	11	3.9	11	81	9	52	11	9	2	76	1.10
121387--121430	18	2.4	18	88	11	63	72	0	20	6	1.07
123109--123182	33	2.2	33	90	4	114	37	4	13	44	1.63
127354--127407	20	2.7	20	73	2	54	48	11	5	35	1.62
127463--127508	22	2.1	22	88	4	67	45	10	0	43	1.39
127549--127589	20	2.0	20	85	0	55	41	17	21	19	1.90
131245--131297	23	2.4	22	76	20	56	9	18	1	69	1.25
139518--139580	21	3.0	21	86	6	83	31	3	31	33	1.74
139529--139561	11	3.1	11	82	8	50	33	0	36	30	1.58
144790--144821	16	2.0	16	93	0	55	25	15	0	59	1.36
147480--147536	26	2.2	26	81	6	62	21	8	10	59	1.57
147495--147544	26	1.9	27	84	8	68	20	10	14	56	1.66
154874--154912	10	3.7	11	86	10	55	30	25	12	30	1.93
154874--154912	21	1.9	20	89	5	60	30	25	12	30	1.93
154874--154918	20	2.2	20	84	7	56	28	26	15	28	1.96
159979--160075	30	3.2	30	70	8	81	28	16	26	27	1.97
164247--164309	21	3.0	21	88	2	81	33	31	4	30	1.78
165957--166059	54	1.9	54	92	4	172	32	11	15	40	1.83
165955--166079	54	2.3	53	86	6	171	30	12	16	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172784--172828	21	2.1	21	87	0	63	26	26	11	35	1.90
173282--173328	20	2.3	20	81	0	58	29	25	14	29	1.95
174640--174695	10	5.6	10	78	4	51	25	33	16	25	1.95
174640--174733	20	4.8	20	75	6	93	24	32	17	25	1.96
174640--174733	40	2.4	39	83	5	116	24	32	17	25	1.96
174650--174704	10	5.5	10	75	16	51	25	34	16	23	1.95
176610--176672	27	2.2	28	83	5	74	71	6	7	14	1.29
177693--177832	6	22.3	6	66	11	57	70	2	20	7	1.23
177693--177832	18	7.8	18	67	14	74	70	2	20	7	1.23
177712--177850	39	3.4	40	71	17	108	70	2	18	7	1.24
181990--182052	33	1.9	33	84	12	85	12	26	6	53	1.62
182049--182105	14	4.2	13	77	20	62	10	17	0	71	1.12
182049--182106	27	2.1	27	87	12	84	10	18	0	70	1.15
182067--182205	18	7.7	18	71	11	88	7	20	2	69	1.27
182067--182174	6	17.7	6	70	5	74	6	18	3	71	1.23
182052--182206	81	1.9	83	81	6	190	9	20	2	68	1.29
183188--183267	28	2.8	28	78	12	83	8	15	5	71	1.28
184029--184083	20	2.8	20	77	5	58	41	18	18	21	1.90
185601--185648	11	4.6	11	82	15	66	77	6	2	14	1.06
185602--185646	19	2.3	20	92	3	74	75	6	2	15	1.11
186729--186812	36	2.3	36	91	0	132	60	1	23	14	1.41
186828--186888	18	3.4	18	86	0	86	67	4	18	9	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186843--186899	30	1.9	30	85	7	80	64	3	21	10	1.39
188618--188683	20	3.3	20	78	0	78	24	33	16	25	1.96
191705--191758	20	2.7	20	82	0	63	24	20	18	37	1.94
191705--191778	30	2.5	30	86	8	98	21	20	18	39	1.93
191705--191769	20	3.2	20	71	16	53	23	21	16	38	1.93
200204--200230	10	2.7	10	100	0	54	77	7	7	7	1.12
200203--200257	12	4.8	12	91	6	78	76	3	7	12	1.12
200214--200259	12	3.8	12	97	0	83	73	2	8	15	1.16
211226--211276	10	5.0	10	81	13	68	72	9	0	17	1.11
211230--211275	19	2.3	21	92	7	78	76	8	0	15	1.02
211230--211263	9	3.7	9	88	4	50	76	8	0	14	1.01
211229--211277	11	4.6	11	80	19	68	77	8	0	14	0.98
211317--211355	14	2.7	14	96	4	69	61	5	15	17	1.51

Tables:   1

The End!