Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2802_ERROPOS155469
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 155469
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:1745 original size:20 final size:20
Alignment explanation
Indices: 1720--1758 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
1710 GCTACTCATA
1720 TTTTTA-AAAACTTATCAGAG
1 TTTTTAGAAAACTTA-CAGAG
*
1740 TTTTTAGAACACTTACAGA
1 TTTTTAGAAAACTTACAGA
1759 ATCGGTGCCG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.38
Consensus pattern (20 bp):
TTTTTAGAAAACTTACAGAG
Found at i:7891 original size:15 final size:16
Alignment explanation
Indices: 7873--7908 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7863 TCAAAAAAAG
*
7873 AAAAAGGGAAAAGAAA
1 AAAAAGGAAAAAGAAA
*
7889 AAAAAAGAAAAAGAAA
1 AAAAAGGAAAAAGAAA
7905 AAAA
1 AAAA
7909 GAGCTCAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (16 bp):
AAAAAGGAAAAAGAAA
Found at i:14102 original size:17 final size:17
Alignment explanation
Indices: 14082--14115 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
14072 ATTATTAAGA
14082 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA-TATAT
14099 ATTTTAATTAAATATAT
1 ATTTTAATTAAATATAT
14116 TTAATAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTTTAATTAAATATAT
Found at i:14335 original size:44 final size:45
Alignment explanation
Indices: 14272--14369 Score: 128
Period size: 45 Copynumber: 2.2 Consensus size: 45
14262 CTATTACACC
*
14272 TCCATTCCATTCAACCAAACACA-AGA-ATACTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACA-ATAGATATACTATTACGCCTCTAT
* * **
14316 TCCATTACATTCAACCAAACAATTGATTTGTTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACAATAGATATACTATTACGCCTCTAT
14361 TCCATTACA
1 TCCATTACA
14370 GCGAACCAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
43 1 0.02
44 22 0.47
45 24 0.51
ACGTcount: A:0.34, C:0.29, G:0.05, T:0.33
Consensus pattern (45 bp):
TCCATTACATTCAACCAAACAATAGATATACTATTACGCCTCTAT
Found at i:15978 original size:54 final size:54
Alignment explanation
Indices: 15891--15998 Score: 146
Period size: 54 Copynumber: 2.0 Consensus size: 54
15881 TTCGTCACTA
* * * *
15891 ATTTAAGATTGAAATCCCTGTTTCTAATCAAATTCGATTTAAGATTATTAAGTG
1 ATTTAAGATTAAAATACCTGTTTCTAATAAAATTCGATTTAAAATTATTAAGTG
* *
15945 ATTTAAGATTAAAATACCT-TTTTTAAATAAAATTTGATTTAAAATTATTAAGTG
1 ATTTAAGATTAAAATACCTGTTTCT-AATAAAATTCGATTTAAAATTATTAAGTG
15999 TATAAATCCA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
53 4 0.09
54 43 0.91
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (54 bp):
ATTTAAGATTAAAATACCTGTTTCTAATAAAATTCGATTTAAAATTATTAAGTG
Found at i:17079 original size:24 final size:24
Alignment explanation
Indices: 17047--17094 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
17037 GCTTATTATG
17047 TTGGCCTCATCGAGACAACGAGGT
1 TTGGCCTCATCGAGACAACGAGGT
17071 TTGGCCTCATCGAGACAACGAGGT
1 TTGGCCTCATCGAGACAACGAGGT
17095 CCCTCATCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.29, T:0.21
Consensus pattern (24 bp):
TTGGCCTCATCGAGACAACGAGGT
Found at i:17101 original size:21 final size:23
Alignment explanation
Indices: 17046--17102 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 23
17036 CGCTTATTAT
*
17046 GTTGGCCTCATCGAGACAACGAG
1 GTTGCCCTCATCGAGACAACGAG
*
17069 GTTTGGCCTCATCGAGACAACGAG
1 G-TTGCCCTCATCGAGACAACGAG
17093 G-T-CCCTCATC
1 GTTGCCCTCATC
17103 TTGTCGTGAC
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 7 0.22
22 1 0.03
23 1 0.03
24 23 0.72
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (23 bp):
GTTGCCCTCATCGAGACAACGAG
Found at i:25138 original size:17 final size:17
Alignment explanation
Indices: 25117--25150 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
25107 TTATTATTAA
25117 ATAT-ATTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
25134 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
25151 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:31343 original size:6 final size:6
Alignment explanation
Indices: 31332--31372 Score: 57
Period size: 6 Copynumber: 6.8 Consensus size: 6
31322 TTGAGCTCTT
*
31332 TTTTTC TTTTTC TTTTT- TTTTTC TTTTCCC TTTTTC TTTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTT-TC TTTTTC TTTTT
31373 TTAAAAGATC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 5 0.16
6 21 0.68
7 5 0.16
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTC
Found at i:37523 original size:20 final size:20
Alignment explanation
Indices: 37487--37525 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
37477 CGGCACCGAT
37487 TCTGTAAGTGTTCTAAAAAC
1 TCTGTAAGTGTTCTAAAAAC
*
37507 TCTGATAAGT-TTTTAAAAA
1 TCTG-TAAGTGTTCTAAAAA
37526 TATGAGTAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.38
Consensus pattern (20 bp):
TCTGTAAGTGTTCTAAAAAC
Found at i:61716 original size:6 final size:6
Alignment explanation
Indices: 61705--61778 Score: 53
Period size: 6 Copynumber: 11.8 Consensus size: 6
61695 GGTTTAAGAA
* *
61705 AAAAAG AAAAAG AAAAAGG AAGAAG AAAGAGAG AGAAAA- CAAAAG AAAGAA-
1 AAAAAG AAAAAG AAAAA-G AAAAAG AAA-A-AG A-AAAAG AAAAAG AAA-AAG
* *
61756 AGAAAG ACAAAG AAAAAG AAAAA
1 AAAAAG AAAAAG AAAAAG AAAAA
61779 AGAAGAGAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 14
0.72 0.09 0.19
Matches are distributed among these distances:
5 6 0.11
6 33 0.61
7 9 0.17
8 4 0.07
9 2 0.04
ACGTcount: A:0.76, C:0.03, G:0.22, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:61728 original size:24 final size:25
Alignment explanation
Indices: 61700--61790 Score: 75
Period size: 24 Copynumber: 3.7 Consensus size: 25
61690 GCTAGGGTTT
61700 AAGAAAAAA-AGAAAAAGAAAAAGG
1 AAGAAAAAAGAGAAAAAGAAAAAGG
* *
61724 AAGAAGAAAGAGAGAGAAAA-CAAAAGA
1 AAGAA-AAA-AGAGA-AAAAGAAAAAGG
* *
61751 AAGAAAGAA-AGACAAAGAAAAA-G
1 AAGAAAAAAGAGAAAAAGAAAAAGG
61774 AA-AAAAGAAGAGAAAAA
1 AAGAAAA-AAGAGAAAAA
61791 ATAAAAATAT
Statistics
Matches: 52, Mismatches: 8, Indels: 14
0.70 0.11 0.19
Matches are distributed among these distances:
22 3 0.06
23 7 0.13
24 18 0.35
25 4 0.08
26 3 0.06
27 13 0.25
28 4 0.08
ACGTcount: A:0.76, C:0.02, G:0.22, T:0.00
Consensus pattern (25 bp):
AAGAAAAAAGAGAAAAAGAAAAAGG
Found at i:61730 original size:13 final size:12
Alignment explanation
Indices: 61700--61790 Score: 52
Period size: 13 Copynumber: 7.9 Consensus size: 12
61690 GCTAGGGTTT
61700 AAGAA-AAAAAG
1 AAGAAGAAAAAG
*
61711 AAAAAGAAAAAGG
1 AAGAAGAAAAA-G
*
61724 AAGAAGAAAGAG
1 AAGAAGAAAAAG
*
61736 -AG-AG-AAAAC
1 AAGAAGAAAAAG
*
61745 AA-AAGAAAGA-
1 AAGAAGAAAAAG
*
61755 AAGAAAGACAAAG
1 AAG-AAGAAAAAG
*
61768 AAAAAGAAAAAAG
1 AAGAAG-AAAAAG
61781 AAG-AGAAAAA
1 AAGAAGAAAAA
61791 ATAAAAATAT
Statistics
Matches: 60, Mismatches: 11, Indels: 18
0.67 0.12 0.20
Matches are distributed among these distances:
9 3 0.05
10 7 0.12
11 14 0.23
12 17 0.28
13 19 0.32
ACGTcount: A:0.76, C:0.02, G:0.22, T:0.00
Consensus pattern (12 bp):
AAGAAGAAAAAG
Found at i:61758 original size:28 final size:27
Alignment explanation
Indices: 61717--61788 Score: 76
Period size: 28 Copynumber: 2.6 Consensus size: 27
61707 AAAGAAAAAG
* * *
61717 AAAAAGGAAG-AAGAAAGAGAGAGAAA
1 AAAAAGAAAGAAAGAAAGACAAAGAAA
61743 ACAAAAGAAAGAAAGAAAGACAAAGAAA
1 A-AAAAGAAAGAAAGAAAGACAAAGAAA
61771 AAGAAA-AAAGAAGAGAAA
1 AA-AAAGAAAGAA-AGAAA
61789 AAATAAAAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
26 1 0.03
27 15 0.38
28 23 0.59
ACGTcount: A:0.74, C:0.03, G:0.24, T:0.00
Consensus pattern (27 bp):
AAAAAGAAAGAAAGAAAGACAAAGAAA
Found at i:61961 original size:19 final size:21
Alignment explanation
Indices: 61939--61978 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
61929 AGTCCTTAAC
*
61939 AGCATGCCAG-CA-CCCAGCA
1 AGCAGGCCAGACAGCCCAGCA
61958 AGCAGGCCAGACAGCCCAGCA
1 AGCAGGCCAGACAGCCCAGCA
61979 GTAGGCATCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 2 0.11
21 7 0.39
ACGTcount: A:0.33, C:0.40, G:0.25, T:0.03
Consensus pattern (21 bp):
AGCAGGCCAGACAGCCCAGCA
Found at i:62029 original size:13 final size:13
Alignment explanation
Indices: 62011--62035 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62001 TGTCAGCAGA
62011 AAAAGAAAAAAAG
1 AAAAGAAAAAAAG
62024 AAAAGAAAAAAA
1 AAAAGAAAAAAA
62036 ACAACAGCAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (13 bp):
AAAAGAAAAAAAG
Found at i:64655 original size:30 final size:30
Alignment explanation
Indices: 64622--64725 Score: 124
Period size: 29 Copynumber: 3.5 Consensus size: 30
64612 AATATAAAAT
64622 TTAAAATTTACATTTTGACCACCT-AACTTT-
1 TTAAAA-TTACATTTTGA-CACCTAAACTTTC
* * *
64652 TTAAAATTATATTTTGACATCTCAACTTTC
1 TTAAAATTACATTTTGACACCTAAACTTTC
* *
64682 TTAAAATTATATTTTGAC-CCTAAATTTTC
1 TTAAAATTACATTTTGACACCTAAACTTTC
64711 TTAAAATTACATTTT
1 TTAAAATTACATTTT
64726 AACCTCAAAA
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
28 4 0.06
29 38 0.58
30 24 0.36
ACGTcount: A:0.35, C:0.15, G:0.03, T:0.47
Consensus pattern (30 bp):
TTAAAATTACATTTTGACACCTAAACTTTC
Found at i:65360 original size:6 final size:6
Alignment explanation
Indices: 65345--65417 Score: 51
Period size: 6 Copynumber: 11.7 Consensus size: 6
65335 CTAGGGTTTG
** * *
65345 AAAA-A AAAAGA AAAAGA AACGGGA AGAAGA AAGAGAGA GAAA-A AAAAGAA
1 AAAAGA AAAAGA AAAAGA AA-AAGA AAAAGA AA-A-AGA AAAAGA AAAAG-A
65395 AGAAAGA AAAAGA AAAAGA AAAA
1 A-AAAGA AAAAGA AAAAGA AAAA
65418 AGAAGAGCAA
Statistics
Matches: 53, Mismatches: 8, Indels: 13
0.72 0.11 0.18
Matches are distributed among these distances:
5 8 0.15
6 28 0.53
7 9 0.17
8 8 0.15
ACGTcount: A:0.77, C:0.01, G:0.22, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:65397 original size:23 final size:22
Alignment explanation
Indices: 65371--65431 Score: 74
Period size: 20 Copynumber: 2.9 Consensus size: 22
65361 AAACGGGAAG
65371 AAGAAAGAGAGAGAAAAAAAAGA
1 AAGAAAGA-AGAGAAAAAAAAGA
*
65394 AAGAAAGAA-A-AAGAAAAAGA
1 AAGAAAGAAGAGAAAAAAAAGA
*
65414 AA-AAAGAAGAGCAAAAAA
1 AAGAAAGAAGAGAAAAAAA
65432 TAAAAATATA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
19 6 0.18
20 12 0.36
21 6 0.18
22 1 0.03
23 8 0.24
ACGTcount: A:0.77, C:0.02, G:0.21, T:0.00
Consensus pattern (22 bp):
AAGAAAGAAGAGAAAAAAAAGA
Found at i:65430 original size:12 final size:10
Alignment explanation
Indices: 65344--65415 Score: 58
Period size: 10 Copynumber: 7.0 Consensus size: 10
65334 GCTAGGGTTT
*
65344 GAAAAAAAAA
1 GAAAAAGAAA
65354 GAAAAAGAAA
1 GAAAAAGAAA
*
65364 CGGGAAGAAGAAA
1 ---GAAAAAGAAA
* *
65377 GAGAGAGAAA
1 GAAAAAGAAA
65387 -AAAAAGAAA
1 GAAAAAGAAA
65396 GAAAGAA-AAA
1 GAAA-AAGAAA
65406 GAAAAAGAAA
1 GAAAAAGAAA
65416 AAAGAAGAGC
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
9 9 0.18
10 29 0.59
11 2 0.04
13 9 0.18
ACGTcount: A:0.75, C:0.01, G:0.24, T:0.00
Consensus pattern (10 bp):
GAAAAAGAAA
Found at i:65430 original size:19 final size:20
Alignment explanation
Indices: 65371--65421 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
65361 AAACGGGAAG
* *
65371 AAGAAAGAGAGAGAAA-AAA
1 AAGAAAGAAAGAAAAAGAAA
65390 AAGAAAGAAAGAAAAAGAAA
1 AAGAAAGAAAGAAAAAGAAA
65410 AAGAAA-AAAGAA
1 AAGAAAGAAAGAA
65422 GAGCAAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 20 0.69
20 9 0.31
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (20 bp):
AAGAAAGAAAGAAAAAGAAA
Found at i:65431 original size:26 final size:23
Alignment explanation
Indices: 65371--65430 Score: 68
Period size: 23 Copynumber: 2.5 Consensus size: 23
65361 AAACGGGAAG
* *
65371 AAGAAAGAGAGAGAAAAAAAAGA
1 AAGAAAGAAAAAGAAAAAAAAGA
65394 AAGAAAGAAAAAGAAAAAGAAA-A
1 AAGAAAGAAAAAGAAAAA-AAAGA
65417 AAGAAGAGCAAAAA
1 AAGAA-AG-AAAAA
65431 ATAAAAATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 22 0.69
24 5 0.16
25 5 0.16
ACGTcount: A:0.77, C:0.02, G:0.22, T:0.00
Consensus pattern (23 bp):
AAGAAAGAAAAAGAAAAAAAAGA
Found at i:65606 original size:19 final size:21
Alignment explanation
Indices: 65579--65618 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
65569 AGTCCTTAAC
*
65579 AGCATGCCAG-CA-CCCAGCA
1 AGCAGGCCAGACAGCCCAGCA
65598 AGCAGGCCAGACAGCCCAGCA
1 AGCAGGCCAGACAGCCCAGCA
65619 GTAGGCATCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 2 0.11
21 7 0.39
ACGTcount: A:0.33, C:0.40, G:0.25, T:0.03
Consensus pattern (21 bp):
AGCAGGCCAGACAGCCCAGCA
Found at i:65670 original size:13 final size:13
Alignment explanation
Indices: 65652--65676 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
65642 GTCAGCAGAA
65652 AAAAGAAAAAAAG
1 AAAAGAAAAAAAG
65665 AAAAGAAAAAAA
1 AAAAGAAAAAAA
65677 ACAACAGCAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (13 bp):
AAAAGAAAAAAAG
Found at i:65815 original size:12 final size:12
Alignment explanation
Indices: 65795--65833 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
65785 CAATAGTAGA
*
65795 AAAAAAAAAGAG
1 AAAAGAAAAGAG
*
65807 AAAAGAAAAGGG
1 AAAAGAAAAGAG
65819 AAAAGAAAA-AG
1 AAAAGAAAAGAG
65830 AAAA
1 AAAA
65834 AAAGAGCTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
11 5 0.21
12 19 0.79
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (12 bp):
AAAAGAAAAGAG
Found at i:67498 original size:17 final size:17
Alignment explanation
Indices: 67478--67511 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
67468 ATTATTAAGA
67478 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA-TATAT
67495 ATTTTAATTAAATATAT
1 ATTTTAATTAAATATAT
67512 TTAATAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTTTAATTAAATATAT
Found at i:67731 original size:44 final size:45
Alignment explanation
Indices: 67668--67765 Score: 128
Period size: 45 Copynumber: 2.2 Consensus size: 45
67658 CTATTACACC
*
67668 TCCATTCCATTCAACCAAACACA-AGA-ATACTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACA-ATAGATATACTATTACGCCTCTAT
* * **
67712 TCCATTACATTCAACCAAACAATTGATTTGTTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACAATAGATATACTATTACGCCTCTAT
67757 TCCATTACA
1 TCCATTACA
67766 GCGAACCAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
43 1 0.02
44 22 0.47
45 24 0.51
ACGTcount: A:0.34, C:0.29, G:0.05, T:0.33
Consensus pattern (45 bp):
TCCATTACATTCAACCAAACAATAGATATACTATTACGCCTCTAT
Found at i:69373 original size:54 final size:54
Alignment explanation
Indices: 69286--69393 Score: 146
Period size: 54 Copynumber: 2.0 Consensus size: 54
69276 TTCGTCACTA
* * * *
69286 ATTTAAGATTGAAATCCCTGTTTCTAATCAAATTCGATTTAAGATTATTAAGTG
1 ATTTAAGATTAAAATACCTGTTTCTAATAAAATTCGATTTAAAATTATTAAGTG
* *
69340 ATTTAAGATTAAAATACCT-TTTTTAAATAAAATTTGATTTAAAATTATTAAGTG
1 ATTTAAGATTAAAATACCTGTTTCT-AATAAAATTCGATTTAAAATTATTAAGTG
69394 TATAAATCCA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
53 4 0.09
54 43 0.91
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (54 bp):
ATTTAAGATTAAAATACCTGTTTCTAATAAAATTCGATTTAAAATTATTAAGTG
Found at i:75344 original size:44 final size:45
Alignment explanation
Indices: 75281--75378 Score: 128
Period size: 45 Copynumber: 2.2 Consensus size: 45
75271 CTATTACACC
*
75281 TCCATTCCATTCAACCAAACACA-AGA-ATACTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACA-ATAGATATACTATTACGCCTCTAT
* * **
75325 TCCATTACATTCAACCAAACAATTGATTTGTTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACAATAGATATACTATTACGCCTCTAT
75370 TCCATTACA
1 TCCATTACA
75379 GCGAACCAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
43 1 0.02
44 22 0.47
45 24 0.51
ACGTcount: A:0.34, C:0.29, G:0.05, T:0.33
Consensus pattern (45 bp):
TCCATTACATTCAACCAAACAATAGATATACTATTACGCCTCTAT
Found at i:84717 original size:54 final size:54
Alignment explanation
Indices: 84615--84722 Score: 146
Period size: 54 Copynumber: 2.0 Consensus size: 54
84605 TGGATTTATA
* * * *
84615 CACTTAATAATTTTAAATCAAATTTTATTTAAAAAAGGTATTTTAATCTTAAAT
1 CACTTAATAATCTTAAATCAAATTTGATTTAAAAAAGGGATTTCAATCTTAAAT
* *
84669 CACTTAATAATCTTAAATCGAATTTGA-TTAGAAACAGGGATTTCAATCTTAAAT
1 CACTTAATAATCTTAAATCAAATTTGATTTA-AAAAAGGGATTTCAATCTTAAAT
84723 TAGTGACGAA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
53 3 0.06
54 44 0.94
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (54 bp):
CACTTAATAATCTTAAATCAAATTTGATTTAAAAAAGGGATTTCAATCTTAAAT
Found at i:91442 original size:7 final size:7
Alignment explanation
Indices: 91430--91510 Score: 69
Period size: 7 Copynumber: 11.3 Consensus size: 7
91420 GGGTTTAAGA
91430 AAAAAAG
1 AAAAAAG
91437 AAAAAAG
1 AAAAAAG
91444 -AAAAAG
1 AAAAAAG
* *
91450 GAAGAAG
1 AAAAAAG
91457 AAAGAGAGAG
1 AAA-A-A-AG
91467 AAAACAA-
1 AAAA-AAG
*
91474 AAGAAAG
1 AAAAAAG
91481 AAAGAAAG
1 AAA-AAAG
91489 AAAAAAG
1 AAAAAAG
91496 -AAAAAG
1 AAAAAAG
91502 AAAAAAG
1 AAAAAAG
91509 AA
1 AA
91511 GAGAAAAATA
Statistics
Matches: 61, Mismatches: 6, Indels: 14
0.75 0.07 0.17
Matches are distributed among these distances:
6 14 0.23
7 31 0.51
8 8 0.13
9 3 0.05
10 5 0.08
ACGTcount: A:0.78, C:0.01, G:0.21, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:91461 original size:24 final size:24
Alignment explanation
Indices: 91433--91518 Score: 93
Period size: 25 Copynumber: 3.4 Consensus size: 24
91423 TTTAAGAAAA
*
91433 AAAGAAAAAAGAAAAAGGAAGAAG
1 AAAGAAAAAAGAAAAAGAAAGAAG
91457 AAAGAGAGAGAAA-ACAAAAGAAAGAAAG
1 AAAGA-A-A-AAAGA-AAAAGAAAG-AAG
*
91485 AAAGAAAAAAGAAAAAGAAAAAAG
1 AAAGAAAAAAGAAAAAGAAAGAAG
91509 AAGAGAAAAA
1 AA-AGAAAAA
91519 TAAAAATATA
Statistics
Matches: 53, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
24 10 0.19
25 19 0.36
26 4 0.08
27 12 0.23
28 8 0.15
ACGTcount: A:0.77, C:0.01, G:0.22, T:0.00
Consensus pattern (24 bp):
AAAGAAAAAAGAAAAAGAAAGAAG
Found at i:91480 original size:4 final size:4
Alignment explanation
Indices: 91426--91516 Score: 58
Period size: 4 Copynumber: 24.5 Consensus size: 4
91416 GCTAGGGTTT
* *
91426 AAGA AAAA AAGA AA-A AAG- AA-A AAGG AAG- AAGA AAGA GAGAGA AA-A
1 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA -A-AGA AAGA
*
91471 CA-A AAGA AAGA AAGA AAGA AA-A AAG- AA-A AAGA AA-A AAGA AGAGA
1 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA A-AGA
91515 AA
1 AA
91517 AATAAAAATA
Statistics
Matches: 70, Mismatches: 5, Indels: 24
0.71 0.05 0.24
Matches are distributed among these distances:
3 24 0.34
4 37 0.53
5 6 0.09
6 3 0.04
ACGTcount: A:0.77, C:0.01, G:0.22, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:91496 original size:35 final size:33
Alignment explanation
Indices: 91426--91505 Score: 83
Period size: 35 Copynumber: 2.4 Consensus size: 33
91416 GCTAGGGTTT
* *
91426 AAGAAAAA-AAGAA-AAAAGAAAAAGGAAGAAGA
1 AAGAAAAAGAA-AACAAAAGAAAAAGAAAGAAAA
* *
91458 AAGAGAGAGAAAACAAAAGAAAGAAAGAAAGAAAA
1 AAGAAAAAGAAAACAAAAG-AA-AAAGAAAGAAAA
91493 AAGAAAAAGAAAA
1 AAGAAAAAGAAAA
91506 AAGAAGAGAA
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
32 8 0.21
33 7 0.18
34 2 0.05
35 21 0.55
ACGTcount: A:0.78, C:0.01, G:0.21, T:0.00
Consensus pattern (33 bp):
AAGAAAAAGAAAACAAAAGAAAAAGAAAGAAAA
Found at i:91518 original size:13 final size:12
Alignment explanation
Indices: 91426--91518 Score: 66
Period size: 13 Copynumber: 7.7 Consensus size: 12
91416 GCTAGGGTTT
91426 AAGAAAAAAAGA
1 AAGAAAAAAAGA
* *
91438 AAAAAGAAAAAGG
1 AAGAA-AAAAAGA
*
91451 AAG-AAGAAAGA
1 AAGAAAAAAAGA
* *
91462 GAGAGAAAACA-A
1 AAGA-AAAAAAGA
*
91474 AAGAAAGAAAGA
1 AAGAAAAAAAGA
91486 AAG-AAAAAAGA
1 AAGAAAAAAAGA
*
91497 AAAAGAAAAAAGA
1 AAGA-AAAAAAGA
91510 AGAGAAAAA
1 A-AGAAAAA
91519 TAAAAATATA
Statistics
Matches: 60, Mismatches: 14, Indels: 13
0.69 0.16 0.15
Matches are distributed among these distances:
11 20 0.33
12 13 0.22
13 25 0.42
14 2 0.03
ACGTcount: A:0.77, C:0.01, G:0.22, T:0.00
Consensus pattern (12 bp):
AAGAAAAAAAGA
Found at i:91523 original size:24 final size:24
Alignment explanation
Indices: 91429--91524 Score: 83
Period size: 24 Copynumber: 3.9 Consensus size: 24
91419 AGGGTTTAAG
*
91429 AAAAA-AAGA-AAAAAGAAAAAGG
1 AAAAAGAAGAGAAAAAGAAAAAGA
*
91451 AAGAAGAAAGAGAGAGAAA-ACAAAAGA
1 AAAAAG-AAGAGA-A-AAAGA-AAAAGA
91478 AAGAAAGAA-AGAAAAAAGAAAAAGA
1 AA-AAAGAAGAG-AAAAAGAAAAAGA
*
91503 AAAAAGAAGAGAAAAATAAAAA
1 AAAAAGAAGAGAAAAAGAAAAA
91525 TATACAGTCG
Statistics
Matches: 60, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
22 4 0.07
24 20 0.33
25 14 0.23
26 6 0.10
27 13 0.22
28 3 0.05
ACGTcount: A:0.78, C:0.01, G:0.20, T:0.01
Consensus pattern (24 bp):
AAAAAGAAGAGAAAAAGAAAAAGA
Found at i:94353 original size:28 final size:27
Alignment explanation
Indices: 94322--94419 Score: 76
Period size: 29 Copynumber: 3.6 Consensus size: 27
94312 AAATATAAAA
94322 TTTAAATTTACATTTGACCACCTAACTT
1 TTTAAATTTACATTTGA-CACCTAACTT
* * *
94350 TTTAAAATTATATTTTGACATCTCAACTT
1 TTTAAATTTACA-TTTGACACCT-AACTT
* *
94379 TCTTAAATTATA-TTTTGAC-CCTAAATT
1 T-TTAAATT-TACATTTGACACCTAACTT
*
94406 CTTAAA-TTACATTT
1 TTTAAATTTACATTT
94420 TAACTCAAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 13
0.72 0.12 0.17
Matches are distributed among these distances:
24 2 0.04
25 4 0.07
26 5 0.09
27 4 0.07
28 16 0.29
29 17 0.30
30 6 0.11
31 2 0.04
ACGTcount: A:0.34, C:0.16, G:0.03, T:0.47
Consensus pattern (27 bp):
TTTAAATTTACATTTGACACCTAACTT
Found at i:94367 original size:29 final size:30
Alignment explanation
Indices: 94334--94398 Score: 91
Period size: 29 Copynumber: 2.2 Consensus size: 30
94324 TAAATTTACA
94334 TTTGACCACCT-AACTTT-TTAAAATTATAT
1 TTTGACCACCTCAACTTTCTT-AAATTATAT
*
94363 TTTGA-CATCTCAACTTTCTTAAATTATAT
1 TTTGACCACCTCAACTTTCTTAAATTATAT
94392 TTTGACC
1 TTTGACC
94399 CTAAATTCTT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
28 4 0.12
29 25 0.78
30 3 0.09
ACGTcount: A:0.31, C:0.18, G:0.05, T:0.46
Consensus pattern (30 bp):
TTTGACCACCTCAACTTTCTTAAATTATAT
Found at i:94414 original size:26 final size:29
Alignment explanation
Indices: 94354--94420 Score: 86
Period size: 26 Copynumber: 2.4 Consensus size: 29
94344 TAACTTTTTA
* *
94354 AAATTATATTTTGACATCTCAACTTTCTT
1 AAATTATATTTTGACACCTCAACATTCTT
94383 AAATTATATTTTGAC-CCT-AA-ATTCTT
1 AAATTATATTTTGACACCTCAACATTCTT
*
94409 AAATTACATTTT
1 AAATTATATTTT
94421 AACTCAAAAG
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 16 0.46
27 2 0.06
28 2 0.06
29 15 0.43
ACGTcount: A:0.34, C:0.15, G:0.03, T:0.48
Consensus pattern (29 bp):
AAATTATATTTTGACACCTCAACATTCTT
Found at i:95076 original size:16 final size:14
Alignment explanation
Indices: 95057--95095 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
95047 AAACGGGAAG
* *
95057 AAAAAGAGAGAGAA
1 AAAAAAAGAAAGAA
95071 AAAAAAAGAAAGAA
1 AAAAAAAGAAAGAA
*
95085 AGAAAAAGAAA
1 AAAAAAAGAAA
95096 AAGAAAAGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (14 bp):
AAAAAAAGAAAGAA
Found at i:95088 original size:30 final size:31
Alignment explanation
Indices: 95030--95102 Score: 85
Period size: 30 Copynumber: 2.3 Consensus size: 31
95020 TAGGGTTTGA
* *
95030 AAAAAAAAGAAAAAAAGAAACGGGAAGAAAAAG
1 AAAAAGAA-AAAAAAAGAAAC-GAAAGAAAAAG
* *
95063 AGAGAGAAAAAAAAAGAAA-GAAAGAAAAAG
1 AAAAAGAAAAAAAAAGAAACGAAAGAAAAAG
95093 AAAAAGAAAA
1 AAAAAGAAAA
95103 GAAGAGCAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
30 18 0.53
32 11 0.32
33 5 0.15
ACGTcount: A:0.78, C:0.01, G:0.21, T:0.00
Consensus pattern (31 bp):
AAAAAGAAAAAAAAAGAAACGAAAGAAAAAG
Found at i:95114 original size:40 final size:40
Alignment explanation
Indices: 95028--95115 Score: 106
Period size: 40 Copynumber: 2.2 Consensus size: 40
95018 GCTAGGGTTT
** * *
95028 GAAAAAAAAAGAAAAAAAGAAACGGGAAGAAAAAGAGAGA
1 GAAAAAAAAAGAAAAAAAGAAAAAGAAAAAAAAAGAGAGA
*
95068 GAAAAAAAAAGAAAGAAAGAAAAAGAAAAAGAAAAGA-AGA
1 GAAAAAAAAAGAAAAAAAGAAAAAGAAAAA-AAAAGAGAGA
*
95108 GCAAAAAA
1 GAAAAAAA
95116 TAAAATATAC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
40 35 0.85
41 6 0.15
ACGTcount: A:0.76, C:0.02, G:0.22, T:0.00
Consensus pattern (40 bp):
GAAAAAAAAAGAAAAAAAGAAAAAGAAAAAAAAAGAGAGA
Found at i:105148 original size:22 final size:22
Alignment explanation
Indices: 105103--105148 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
105093 TAATATAGAC
* **
105103 TTAATAAATGCAGAAAAATCTT
1 TTAATAAATGCAAAAAAAAATT
*
105125 TTAATAAATGGAAAAAAAAATT
1 TTAATAAATGCAAAAAAAAATT
105147 TT
1 TT
105149 GAATTTTTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.54, C:0.04, G:0.09, T:0.33
Consensus pattern (22 bp):
TTAATAAATGCAAAAAAAAATT
Found at i:120868 original size:6 final size:6
Alignment explanation
Indices: 120857--120930 Score: 62
Period size: 6 Copynumber: 11.8 Consensus size: 6
120847 GGTTTAAGAA
* *
120857 AAAAAG AAAAAG AAAAAGG AAGAAG AAAGAGAG AGAAAA- CAAAAG AAAGAA-
1 AAAAAG AAAAAG AAAAA-G AAAAAG AAA-A-AG A-AAAAG AAAAAG AAA-AAG
*
120908 AGAAAG AAAAAG AAAAAG AAAAA
1 AAAAAG AAAAAG AAAAAG AAAAA
120931 AGAAGAGAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
5 6 0.11
6 34 0.62
7 9 0.16
8 4 0.07
9 2 0.04
ACGTcount: A:0.77, C:0.01, G:0.22, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:120880 original size:24 final size:25
Alignment explanation
Indices: 120852--120942 Score: 84
Period size: 24 Copynumber: 3.7 Consensus size: 25
120842 GCTAGGGTTT
120852 AAGAAAAAA-AGAAAAAGAAAAAGG
1 AAGAAAAAAGAGAAAAAGAAAAAGG
* *
120876 AAGAAGAAAGAGAGAGAAAA-CAAAAGA
1 AAGAA-AAA-AGAGA-AAAAGAAAAAGG
*
120903 AAGAAAGAA-AGAAAAAGAAAAA-G
1 AAGAAAAAAGAGAAAAAGAAAAAGG
120926 AA-AAAAGAAGAGAAAAA
1 AAGAAAA-AAGAGAAAAA
120943 ATAAAAATAT
Statistics
Matches: 54, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
22 3 0.06
23 8 0.15
24 19 0.35
25 4 0.07
26 3 0.06
27 13 0.24
28 4 0.07
ACGTcount: A:0.77, C:0.01, G:0.22, T:0.00
Consensus pattern (25 bp):
AAGAAAAAAGAGAAAAAGAAAAAGG
Found at i:120910 original size:28 final size:27
Alignment explanation
Indices: 120852--120940 Score: 80
Period size: 28 Copynumber: 3.4 Consensus size: 27
120842 GCTAGGGTTT
* *
120852 AAGAAAAAAAGAAAAAG---AAAAAGG
1 AAGAAAGAAAGAAAAAGAAAAAAAAGA
* *
120876 AAG-AAGAAAGAGAGAGAAAACAAAAGA
1 AAGAAAGAAAGAAAAAGAAAA-AAAAGA
120903 AAGAAAGAAAGAAAAAGAAAAAGAAA-A
1 AAGAAAGAAAGAAAAAGAAAAA-AAAGA
120930 AAGAAGAGAAA
1 AAGAA-AGAAA
120941 AAATAAAAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
23 10 0.19
24 3 0.06
26 1 0.02
27 15 0.29
28 23 0.44
ACGTcount: A:0.76, C:0.01, G:0.22, T:0.00
Consensus pattern (27 bp):
AAGAAAGAAAGAAAAAGAAAAAAAAGA
Found at i:121113 original size:19 final size:21
Alignment explanation
Indices: 121091--121130 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
121081 AGTCCTTAAC
*
121091 AGCATGCCAG-CA-CCCAGCA
1 AGCAGGCCAGACAGCCCAGCA
121110 AGCAGGCCAGACAGCCCAGCA
1 AGCAGGCCAGACAGCCCAGCA
121131 GTAGGCATCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 2 0.11
21 7 0.39
ACGTcount: A:0.33, C:0.40, G:0.25, T:0.03
Consensus pattern (21 bp):
AGCAGGCCAGACAGCCCAGCA
Found at i:121181 original size:13 final size:13
Alignment explanation
Indices: 121163--121187 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
121153 TGTCAGCAGA
121163 AAAAGAAAAAAAG
1 AAAAGAAAAAAAG
121176 AAAAGAAAAAAA
1 AAAAGAAAAAAA
121188 ACAACAGCAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (13 bp):
AAAAGAAAAAAAG
Found at i:123833 original size:29 final size:30
Alignment explanation
Indices: 123777--123880 Score: 124
Period size: 29 Copynumber: 3.5 Consensus size: 30
123767 AATATAAAAT
123777 TTAAAATTTACATTTTGACCACCT-AACTTT-
1 TTAAAA-TTACATTTTGA-CACCTCAACTTTC
* *
123807 TTAAAATTATATTTTGACATCTCAACTTTC
1 TTAAAATTACATTTTGACACCTCAACTTTC
* * *
123837 TTAAAATTATATTTTGAC-CCTAAATTTTC
1 TTAAAATTACATTTTGACACCTCAACTTTC
123866 TTAAAATTACATTTT
1 TTAAAATTACATTTT
123881 AATCTCAAAA
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
28 4 0.06
29 38 0.58
30 24 0.36
ACGTcount: A:0.35, C:0.15, G:0.03, T:0.47
Consensus pattern (30 bp):
TTAAAATTACATTTTGACACCTCAACTTTC
Found at i:123854 original size:59 final size:58
Alignment explanation
Indices: 123777--123888 Score: 140
Period size: 59 Copynumber: 1.9 Consensus size: 58
123767 AATATAAAAT
*
123777 TTAAAATTTACATTTTGACCACCT-AACTTT-TTAAAATTATATTTTGACATCTCAACTTTC
1 TTAAAATTTACATTTTGA-C-CCTAAACTTTCTTAAAATTACATTTT-A-ATCTCAACTTTC
* *
123837 TTAAAA-TTATATTTTGACCCTAAATTTTCTTAAAATTACATTTTAATCTCAA
1 TTAAAATTTACATTTTGACCCTAAACTTTCTTAAAATTACATTTTAATCTCAA
123889 AAGTTTGTGT
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
57 10 0.21
58 7 0.15
59 24 0.51
60 6 0.13
ACGTcount: A:0.36, C:0.16, G:0.03, T:0.46
Consensus pattern (58 bp):
TTAAAATTTACATTTTGACCCTAAACTTTCTTAAAATTACATTTTAATCTCAACTTTC
Found at i:124545 original size:16 final size:15
Alignment explanation
Indices: 124526--124593 Score: 59
Period size: 16 Copynumber: 4.4 Consensus size: 15
124516 AAACGGGAAG
124526 AAAAAAGAGAGAGAAA
1 AAAAAAGAGA-AGAAA
124542 AAAAAAGA-AAGAAA
1 AAAAAAGAGAAGAAA
* *
124556 GAAAAAGAAAAAGAAA
1 AAAAAAG-AGAAGAAA
*
124572 AAAGAAGAGCAA-AAA
1 AAAAAAGAG-AAGAAA
124587 ATAAAAA
1 A-AAAAA
124594 TATACAGTCG
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
14 11 0.26
15 7 0.16
16 25 0.58
ACGTcount: A:0.79, C:0.01, G:0.18, T:0.01
Consensus pattern (15 bp):
AAAAAAGAGAAGAAA
Found at i:124586 original size:12 final size:10
Alignment explanation
Indices: 124499--124571 Score: 51
Period size: 10 Copynumber: 7.0 Consensus size: 10
124489 GCTAGGGTTT
*
124499 GAAAAAAAAA
1 GAAAAAGAAA
124509 GAAAAAGAAA
1 GAAAAAGAAA
124519 CGGGAAGAAA-AAA
1 ---GAA-AAAGAAA
* *
124532 GAGAGAGAAA
1 GAAAAAGAAA
*
124542 AAAAAAGAAA
1 GAAAAAGAAA
124552 GAAAGAA-AAA
1 GAAA-AAGAAA
124562 GAAAAAGAAA
1 GAAAAAGAAA
124572 AAAGAAGAGC
Statistics
Matches: 49, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
9 4 0.08
10 34 0.69
11 2 0.04
13 6 0.12
14 3 0.06
ACGTcount: A:0.77, C:0.01, G:0.22, T:0.00
Consensus pattern (10 bp):
GAAAAAGAAA
Found at i:124586 original size:14 final size:13
Alignment explanation
Indices: 124500--124587 Score: 63
Period size: 14 Copynumber: 6.4 Consensus size: 13
124490 CTAGGGTTTG
124500 AAAAAA-AAAGAA
1 AAAAAAGAAAGAA
*
124512 AAAGAAACGGGAAGAA
1 AAA-AAA--GAAAGAA
* *
124528 AAAAGAGAGAGAAA
1 AAAAAAGAAAG-AA
124542 AAAAAAGAAAGAA
1 AAAAAAGAAAGAA
124555 AGAAAAAGAAA-AA
1 A-AAAAAGAAAGAA
*
124568 GAAAAAAGAAGAGCA
1 -AAAAAAGAA-AGAA
124583 AAAAA
1 AAAAA
124588 TAAAAATATA
Statistics
Matches: 60, Mismatches: 7, Indels: 16
0.72 0.08 0.19
Matches are distributed among these distances:
12 3 0.05
13 19 0.32
14 27 0.45
15 3 0.05
16 8 0.13
ACGTcount: A:0.77, C:0.02, G:0.20, T:0.00
Consensus pattern (13 bp):
AAAAAAGAAAGAA
Found at i:124586 original size:19 final size:20
Alignment explanation
Indices: 124529--124577 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
124519 CGGGAAGAAA
*
124529 AAAGAGAGAGAAAA-AAAAAG
1 AAAGAAAGA-AAAAGAAAAAG
124549 AAAGAAAGAAAAAGAAAAAG
1 AAAGAAAGAAAAAGAAAAAG
124569 AAA-AAAGAA
1 AAAGAAAGAA
124578 GAGCAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 10 0.37
20 17 0.63
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (20 bp):
AAAGAAAGAAAAAGAAAAAG
Found at i:124586 original size:20 final size:19
Alignment explanation
Indices: 124523--124593 Score: 54
Period size: 20 Copynumber: 3.4 Consensus size: 19
124513 AAGAAACGGG
124523 AAGAAAAAAGAGAGAGAAAA
1 AAGAAAAAAGA-AGAGAAAA
*
124543 AA-AAAGAAAGAAAGAAAAAGAAA
1 AAGAAA-AAAG-AAG--AGA-AAA
124566 AAGAAAAAAGAAGAGCAAAA
1 AAGAAAAAAGAAGAG-AAAA
*
124586 AATAAAAA
1 AAGAAAAA
124594 TATACAGTCG
Statistics
Matches: 41, Mismatches: 3, Indels: 14
0.71 0.05 0.24
Matches are distributed among these distances:
19 3 0.07
20 19 0.46
21 2 0.05
22 5 0.12
23 9 0.22
24 3 0.07
ACGTcount: A:0.79, C:0.01, G:0.18, T:0.01
Consensus pattern (19 bp):
AAGAAAAAAGAAGAGAAAA
Found at i:124587 original size:26 final size:24
Alignment explanation
Indices: 124523--124586 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 24
124513 AAGAAACGGG
* *
124523 AAGAAA-AAAGAGAGAGAAAAAAA
1 AAGAAAGAAAGAAAAAGAAAAAAA
*
124546 AAGAAAGAAAGAAAAAGAAAAAGA
1 AAGAAAGAAAGAAAAAGAAAAAAA
124570 AA-AAAGAAGAGCAAAAA
1 AAGAAAGAA-AG-AAAAA
124587 ATAAAAATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
23 12 0.34
24 18 0.51
25 5 0.14
ACGTcount: A:0.78, C:0.02, G:0.20, T:0.00
Consensus pattern (24 bp):
AAGAAAGAAAGAAAAAGAAAAAAA
Found at i:124762 original size:19 final size:21
Alignment explanation
Indices: 124735--124774 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
124725 AGTCCTTAAC
*
124735 AGCATGCCAG-CA-CCCAGCA
1 AGCAGGCCAGACAGCCCAGCA
124754 AGCAGGCCAGACAGCCCAGCA
1 AGCAGGCCAGACAGCCCAGCA
124775 GTAGGCATCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 2 0.11
21 7 0.39
ACGTcount: A:0.33, C:0.40, G:0.25, T:0.03
Consensus pattern (21 bp):
AGCAGGCCAGACAGCCCAGCA
Found at i:124826 original size:13 final size:13
Alignment explanation
Indices: 124808--124832 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
124798 GTCAGCAGAA
124808 AAAAGAAAAAAAG
1 AAAAGAAAAAAAG
124821 AAAAGAAAAAAA
1 AAAAGAAAAAAA
124833 ACAACAGCAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (13 bp):
AAAAGAAAAAAAG
Found at i:124964 original size:6 final size:6
Alignment explanation
Indices: 124948--125001 Score: 60
Period size: 6 Copynumber: 9.2 Consensus size: 6
124938 GTCCAATAGT
*
124948 AGAAAA A-AAAA AGAAAAA AGAAAA AGGGAAA AGAAAA AG--AA AGAAAA
1 AGAAAA AGAAAA AG-AAAA AGAAAA A-GAAAA AGAAAA AGAAAA AGAAAA
124995 AGAAAA A
1 AGAAAA A
125002 AAGAGCTCAA
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
4 4 0.10
5 5 0.12
6 21 0.51
7 11 0.27
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (6 bp):
AGAAAA
Found at i:130718 original size:17 final size:17
Alignment explanation
Indices: 130698--130731 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
130688 ATTATTAAGA
130698 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA-TATAT
130715 ATTTTAATTAAATATAT
1 ATTTTAATTAAATATAT
130732 TTAATAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTTTAATTAAATATAT
Found at i:130951 original size:44 final size:45
Alignment explanation
Indices: 130888--130985 Score: 128
Period size: 45 Copynumber: 2.2 Consensus size: 45
130878 CTATTACACC
*
130888 TCCATTCCATTCAACCAAACACA-AGA-ATACTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACA-ATAGATATACTATTACGCCTCTAT
* * **
130932 TCCATTACATTCAACCAAACAATTGATTTGTTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACAATAGATATACTATTACGCCTCTAT
130977 TCCATTACA
1 TCCATTACA
130986 GCGAACCAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
43 1 0.02
44 22 0.47
45 24 0.51
ACGTcount: A:0.34, C:0.29, G:0.05, T:0.33
Consensus pattern (45 bp):
TCCATTACATTCAACCAAACAATAGATATACTATTACGCCTCTAT
Found at i:132594 original size:54 final size:54
Alignment explanation
Indices: 132507--132614 Score: 146
Period size: 54 Copynumber: 2.0 Consensus size: 54
132497 TTCGTCACTA
* * * *
132507 ATTTAAGATTGAAATCCCTGTTTCTAATCAAATTCGATTTAAGATTATTAAGTG
1 ATTTAAGATTAAAATACCTGTTTCTAATAAAATTCGATTTAAAATTATTAAGTG
* *
132561 ATTTAAGATTAAAATACCT-TTTTTAAATAAAATTTGATTTAAAATTATTAAGTG
1 ATTTAAGATTAAAATACCTGTTTCT-AATAAAATTCGATTTAAAATTATTAAGTG
132615 TATAAATCCA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
53 4 0.09
54 43 0.91
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (54 bp):
ATTTAAGATTAAAATACCTGTTTCTAATAAAATTCGATTTAAAATTATTAAGTG
Found at i:134830 original size:43 final size:43
Alignment explanation
Indices: 134727--134857 Score: 183
Period size: 43 Copynumber: 3.1 Consensus size: 43
134717 TTTCAGAAAT
* * * *
134727 AAACGCCGCTAAAGACCATCATCTTTAGCGGCGC-ATTCCTAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
*
134769 AAACGCCGCTAAAGACCATGACCTTTAGCGACGCTTTTCCCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
* * *
134812 AAACGCCGCTAAATACCATGACCTTTAGCGGCGCTTCTACCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
134855 AAA
1 AAA
134858 TGCCATTATA
Statistics
Matches: 79, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
42 31 0.39
43 48 0.61
ACGTcount: A:0.30, C:0.34, G:0.16, T:0.21
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
Found at i:136801 original size:5 final size:5
Alignment explanation
Indices: 136757--136783 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
136747 GATTCTTGTT
136757 TTTTA TTTTA TTTTA TTTTA TTTTA TT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TT
136784 GGTAAAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:139279 original size:107 final size:106
Alignment explanation
Indices: 139135--139347 Score: 363
Period size: 106 Copynumber: 2.0 Consensus size: 106
139125 GCAAAAAAAT
* ** *
139135 TTTCATTTTGAACAAAATGACGTCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTTATAT
1 TTTCATTTTCAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTA-TTTTTTATAA
*
139200 ATTGATTTGTTTTTTGCGGCGTTTTTTAAAAAAACGCCGCTA
65 ATTGATTTATTTTTTGCGGCGTTTTTTAAAAAAACGCCGCTA
*
139242 TTTCATTTTCAGCAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAAA
1 TTTCATTTTCAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAAA
139307 TTGATTTATTTTTTGCGGCGTTTTTTAAAAAAACGCCGCTA
66 TTGATTTATTTTTTGCGGCGTTTTTTAAAAAAACGCCGCTA
139348 AAGGTAAGCA
Statistics
Matches: 100, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
106 50 0.50
107 50 0.50
ACGTcount: A:0.27, C:0.12, G:0.12, T:0.48
Consensus pattern (106 bp):
TTTCATTTTCAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAAA
TTGATTTATTTTTTGCGGCGTTTTTTAAAAAAACGCCGCTA
Found at i:139487 original size:75 final size:74
Alignment explanation
Indices: 139406--139548 Score: 250
Period size: 75 Copynumber: 1.9 Consensus size: 74
139396 TCATTTTGAA
* *
139406 CAAAATGACGCCGTTTTGCTATGCTAAAAAATTTTTATTTTATTTTTTATATATATTGATTTGTT
1 CAAAATGACGCCGTTTTGCTATGCTAAAAAATTTTTATTTTATTTTTT-TATAAATTGATTTATT
139471 TTTTTTTCAG
65 TTTTTTTCAG
*
139481 CAAAATGACGCCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTTATAAATTGATTTATTT
1 CAAAATGACGCCGTTTTGCTATGCTAAAAAATTTTTATTTTATTTTTTTATAAATTGATTTATTT
139546 TTT
66 TTT
139549 GCGGCGTTTT
Statistics
Matches: 65, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
74 18 0.28
75 47 0.72
ACGTcount: A:0.27, C:0.09, G:0.10, T:0.54
Consensus pattern (74 bp):
CAAAATGACGCCGTTTTGCTATGCTAAAAAATTTTTATTTTATTTTTTTATAAATTGATTTATTT
TTTTTTCAG
Found at i:139643 original size:217 final size:214
Alignment explanation
Indices: 139247--139681 Score: 613
Period size: 217 Copynumber: 2.0 Consensus size: 214
139237 CGCTATTTCA
139247 TTTTCAGCAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAAATTGAT
1 TTTTCAGCAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAAATTGAT
* * *
139312 TTATTTTTTGCGGCGTTTTTTAAAAAAACGCCGCTAAAGGTAAGCAATAGTGGCGTTTTTATGAG
66 TTATTTTTTGCGGCGTTTTTT------A----GCTAAAGCTAACCAATAGCGGCGTTTTTATGAG
* **
139377 AAATGCCGCAAAAATTTTTTCATTTTGAACAAAATGACGCCGTTTTGCTATGCTAAAAAATTTTT
121 AAACGCCGCAAAAAAATTTTCATTTTGAACAAAATGACGCCGTTTTGCTATGCT-AAAAATTTTT
139442 A-TTTTATTTTTTATATATATTGATTTGTTTTT
185 ATTTTTA-TTTTTATA-A-ATTGATTTGTTTTT
*
139474 TTTTCAGCAAAATGACGCCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTTATAAATTGA
1 TTTTCAGCAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTA-TTTTTTATAAATTGA
** * **
139539 TTTATTTTTTGCGGCGTTTTTT-GCTATTGCTTACCTTTAGCGGCGTTTTTATGAGAAACGCCGC
65 TTTATTTTTTGCGGCGTTTTTTAGCTAAAGCTAACCAATAGCGGCGTTTTTATGAGAAACGCCGC
139603 AAAAAAATTTTCATTTTGAACAAAATGACGCCGTTTTGCTATGCTAAAAATTTTTATTTTTATTT
130 AAAAAAATTTTCATTTTGAACAAAATGACGCCGTTTTGCTATGCTAAAAATTTTTATTTTTATTT
139668 TTATAAATTGATTT
195 TTATAAATTGATTT
139682 CTTATAAAAT
Statistics
Matches: 194, Mismatches: 12, Indels: 17
0.87 0.05 0.08
Matches are distributed among these distances:
214 8 0.04
215 1 0.01
216 19 0.10
217 81 0.42
227 48 0.25
228 37 0.19
ACGTcount: A:0.29, C:0.12, G:0.14, T:0.46
Consensus pattern (214 bp):
TTTTCAGCAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAAATTGAT
TTATTTTTTGCGGCGTTTTTTAGCTAAAGCTAACCAATAGCGGCGTTTTTATGAGAAACGCCGCA
AAAAAATTTTCATTTTGAACAAAATGACGCCGTTTTGCTATGCTAAAAATTTTTATTTTTATTTT
TATAAATTGATTTGTTTTT
Found at i:140323 original size:14 final size:15
Alignment explanation
Indices: 140236--140324 Score: 62
Period size: 14 Copynumber: 6.1 Consensus size: 15
140226 TCGATCCCTG
140236 AATCCCTAAACCTTA
1 AATCCCTAAACCTTA
* *
140251 AATCCCT-AACTTTT
1 AATCCCTAAACCTTA
* *
140265 AACCCCT-AACATCT-
1 AATCCCTAAACCT-TA
* *
140279 AACCCCTAAACCCCT-
1 AATCCCTAAA-CCTTA
140294 AATCCCTAAACCTTA
1 AATCCCTAAACCTTA
*
140309 AATCCC-AACCCTTA
1 AATCCCTAAACCTTA
140323 AA
1 AA
140325 CCATAATCCC
Statistics
Matches: 61, Mismatches: 9, Indels: 9
0.77 0.11 0.11
Matches are distributed among these distances:
14 34 0.56
15 26 0.43
16 1 0.02
ACGTcount: A:0.37, C:0.38, G:0.00, T:0.25
Consensus pattern (15 bp):
AATCCCTAAACCTTA
Found at i:140367 original size:15 final size:15
Alignment explanation
Indices: 140326--140367 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
140316 ACCCTTAAAC
140326 CATAATCCCT-AATT
1 CATAATCCCTAAATT
*
140340 CATAATCCTTAAATT
1 CATAATCCCTAAATT
*
140355 CATACTCCCTAAA
1 CATAATCCCTAAA
140368 CCTTAAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 9 0.38
15 15 0.62
ACGTcount: A:0.38, C:0.29, G:0.00, T:0.33
Consensus pattern (15 bp):
CATAATCCCTAAATT
Found at i:140571 original size:15 final size:15
Alignment explanation
Indices: 140553--140603 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
140543 CCTAGCATGT
140553 CTAACCCTTAAATCC
1 CTAACCCTTAAATCC
*
140568 CTAACCCTCT-AACCC
1 CTAACCCT-TAAATCC
* *
140583 CTAAACATTAAATCC
1 CTAACCCTTAAATCC
140598 C-AACCC
1 CTAACCC
140604 CTAATCCATA
Statistics
Matches: 28, Mismatches: 6, Indels: 5
0.72 0.15 0.13
Matches are distributed among these distances:
14 4 0.14
15 23 0.82
16 1 0.04
ACGTcount: A:0.35, C:0.43, G:0.00, T:0.22
Consensus pattern (15 bp):
CTAACCCTTAAATCC
Found at i:141160 original size:114 final size:113
Alignment explanation
Indices: 140934--141469 Score: 691
Period size: 114 Copynumber: 4.7 Consensus size: 113
140924 AGCATTTTTG
** * *
140934 GCCGCTAAATCCCTAAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGAATTTTTTGCGGCGCTTTC
1 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAG-GTTTTTTGCGGCGCTTTC
*
140999 TCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGATGCTTTCTTAAAAAC
65 TCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGACGCTTTCTTAAAAAC
* *
141048 GCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTCAGGTTTTTTGCGGCGCTTTCT
1 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAGGTTTTTTGCGGCGCTTTCT
141113 CAAAAACGCCGCTAAAGCCCTGAGCATTAGCGACGCTTTCTTAAAAAAC
66 CAAAAACGCCGCTAAAGCCCTGAGCATTAGCGACGCTTTCTT-AAAAAC
* * * * *
141162 GCCGCTAAATCCCCGAAAGCTAACAAAACGGTGTCGTTGGGTTTAGGATTTCTTGCGGCG-TTTT
1 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAGG-TTTTTTGCGGCGCTTTC
* * * * *
141226 TGAGGAAGCGCCGCTAAATCCCTGAGCATTAGCGGCGCTTTAC-TAAAAAC
65 TCA-AAAACGCCGCTAAAGCCCTGAGCATTAGCGACGCTTT-CTTAAAAAC
* * *
141276 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCG-AGTTGAGCTTAAGTTTTTTTGCGGCGCTTTT
1 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTT-AGGTTTTTTGCGGCGC-TTT
* * * *
141340 ATCAAAAATGCCGCTAAAGCCCTGAGCATTAGTGGCGCTTTCTTAAAAAC
64 CTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGACGCTTTCTTAAAAAC
* * **** ** *
141390 GCCACTAAACCCCCGAAAGCTTGGGAAACGATGTCGTTGGGCTTAGGTTTTTTGCGGCACTTTCT
1 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAGGTTTTTTGCGGCGCTTTCT
141455 CAAAAACGCCGCTAA
66 CAAAAACGCCGCTAA
141470 TGCTTATTTT
Statistics
Matches: 367, Mismatches: 46, Indels: 19
0.85 0.11 0.04
Matches are distributed among these distances:
113 96 0.26
114 212 0.58
115 58 0.16
116 1 0.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.25
Consensus pattern (113 bp):
GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAGGTTTTTTGCGGCGCTTTCT
CAAAAACGCCGCTAAAGCCCTGAGCATTAGCGACGCTTTCTTAAAAAC
Done.