genome.fa.s957.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2912
Parameters: 2 7 7 80 10 50 1000
Length:  66074

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3181--3211	8	3.9	8	100	0	62	12	0	0	87	0.55
3893--3963	17	3.9	17	72	18	63	56	8	0	35	1.30
3898--3949	21	2.5	21	76	14	63	59	9	0	30	1.29
3975--4324	114	3.1	113	77	5	357	28	23	17	30	1.97
4219--4364	74	2.0	73	84	6	188	29	23	16	30	1.96
4105--4506	188	2.1	188	87	0	572	28	23	17	31	1.97
4293--4723	227	1.9	228	88	1	659	25	23	19	31	1.98
4310--4780	114	4.1	114	82	2	570	26	23	19	31	1.98
5634--5692	13	4.3	13	71	23	50	38	8	10	42	1.69
5930--5978	25	1.9	25	83	4	62	30	10	0	59	1.31
8049--8173	24	5.3	23	74	14	78	50	2	8	39	1.45
9612--9645	17	2.0	17	88	0	50	35	0	0	64	0.94
9629--9735	11	10.4	11	68	26	56	35	2	0	60	1.17
9578--9749	81	2.1	81	92	3	283	34	2	0	62	1.15
9578--9762	40	4.5	40	90	6	264	35	2	0	61	1.15
9700--9762	33	1.9	33	90	6	101	36	1	0	61	1.05
15226--15375	13	11.2	13	68	21	53	24	12	10	53	1.69
15291--15357	23	2.8	23	84	11	82	25	14	10	49	1.76
15293--15365	12	6.1	12	75	12	69	27	15	9	47	1.76
15290--15388	12	7.8	12	73	17	67	27	13	9	50	1.71
22146--22180	16	2.2	16	89	0	52	17	5	0	77	0.96
23572--23721	13	11.2	13	68	21	53	24	12	10	53	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23637--23703	23	2.8	23	84	11	82	25	14	10	49	1.76
23639--23711	12	6.1	12	75	12	69	27	15	9	47	1.76
23636--23734	12	7.8	12	73	17	67	27	13	9	50	1.71
30488--30522	16	2.2	16	89	0	52	17	5	0	77	0.96
31913--32062	13	11.2	13	68	21	53	24	12	10	53	1.69
31978--32044	23	2.8	23	84	11	82	25	14	10	49	1.76
31980--32052	12	6.1	12	75	12	69	27	15	9	47	1.76
31977--32075	12	7.8	12	73	17	67	27	13	9	50	1.71
45436--45465	15	1.9	16	93	6	53	43	6	23	26	1.78

Tables:   1

The End!