genome.fa.s958.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3809
Parameters: 2 7 7 80 10 50 1000
Length:  66031

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125--239	41	2.8	39	75	13	99	23	23	26	26	2.00
213--409	81	2.4	82	79	11	206	26	30	17	24	1.97
352--485	42	3.2	41	78	7	126	27	31	17	23	1.97
220--434	83	2.6	84	79	9	217	27	31	17	23	1.97
852--1015	66	2.5	65	85	4	215	13	25	19	41	1.88
6388--6749	9	43.0	9	66	17	161	31	2	19	46	1.63
6410--6689	16	17.8	16	66	18	99	32	2	18	46	1.62
6448--6676	25	9.1	25	76	9	189	34	2	19	44	1.63
6468--6707	50	4.9	50	72	15	171	33	2	18	45	1.63
6446--6633	75	2.5	74	94	3	306	34	2	17	45	1.60
6654--6707	25	2.2	24	80	6	56	31	1	18	48	1.59
6808--6863	27	2.1	27	96	0	103	46	3	7	42	1.48
6835--7059	121	1.9	121	95	1	407	44	7	7	40	1.59
7089--7159	17	3.8	17	79	15	61	40	0	12	46	1.42
7200--7290	13	6.9	13	71	20	73	41	3	8	46	1.51
7183--7307	40	3.2	38	82	7	108	40	3	11	45	1.56
7325--7357	10	3.1	11	86	8	50	36	21	9	33	1.85
10265--10307	7	6.3	7	83	5	52	20	2	0	76	0.89
10912--10983	14	4.9	14	81	6	81	29	43	1	26	1.63
10904--10990	45	2.0	44	97	2	165	29	42	1	26	1.63
10919--11005	21	4.0	22	71	10	70	32	42	1	24	1.62
10913--11004	7	12.7	7	67	11	51	31	43	1	23	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10948--11007	29	2.1	29	81	6	68	33	45	0	21	1.52
11699--11741	19	2.3	19	91	0	68	13	2	2	81	0.89
12124--12164	21	2.0	20	85	4	55	39	41	0	19	1.52
13055--13334	41	6.8	41	88	3	375	32	26	22	18	1.97
13399--13494	40	2.4	40	78	1	104	23	16	19	39	1.92
13410--13504	40	2.4	40	81	0	100	21	16	22	40	1.92
13429--13505	40	1.9	40	86	0	109	20	19	20	38	1.93
15222--15365	75	1.9	75	81	2	173	27	21	19	31	1.97
15233--15364	40	3.4	39	70	19	107	28	21	19	29	1.98
16880--16922	15	2.8	16	75	7	52	41	13	20	23	1.88
17117--17142	13	2.0	13	100	0	52	15	7	0	76	0.99
17308--17337	16	1.9	16	93	6	53	70	0	6	23	1.11
18414--18483	37	1.9	36	82	8	88	48	2	5	42	1.41
20872--21038	90	1.8	90	88	1	253	27	13	21	37	1.91
22517--23302	390	2.0	391	98	0	1520	25	17	28	28	1.97
30779--30820	22	1.9	22	85	0	57	11	9	9	69	1.38
40393--40436	11	3.8	11	80	11	52	31	0	4	63	1.14
42478--42651	21	8.3	21	68	5	102	17	24	17	40	1.90
42495--42666	42	4.1	42	93	0	254	17	23	17	41	1.90
55608--55639	16	2.0	16	93	0	55	31	34	6	28	1.82
60153--60198	23	2.0	24	82	4	58	32	26	0	41	1.56
60296--60365	17	3.8	18	68	18	54	40	14	0	45	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60295--60372	39	2.0	39	100	0	156	38	15	0	46	1.46
60378--60409	3	11.0	3	93	6	57	65	0	0	34	0.93
65740--65796	25	2.3	25	96	0	105	33	15	19	31	1.93

Tables:   1

The End!