genome.fa.s961.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold676
Parameters: 2 7 7 80 10 50 1000
Length:  59038

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
866--1128	40	6.6	40	87	3	316	24	20	28	26	1.99
905--1163	80	3.3	80	84	3	238	25	20	28	25	1.99
8172--8434	40	6.6	40	87	3	316	24	20	28	26	1.99
8211--8469	80	3.3	80	83	3	220	26	20	27	25	1.99
19499--19635	40	3.4	40	76	2	141	37	21	21	18	1.94
19532--19600	20	3.5	20	69	0	57	34	21	24	18	1.96
19499--19657	80	2.0	80	85	2	212	38	21	21	18	1.94
19499--19654	40	3.9	40	73	6	129	38	21	21	18	1.93
21213--21436	104	2.2	104	93	1	378	17	19	31	31	1.95
21355--21506	71	2.1	72	92	1	252	23	17	29	30	1.97
24348--24405	25	2.3	25	85	5	73	32	20	17	29	1.95
26554--26846	27	10.8	27	83	5	335	20	17	20	42	1.89
26569--26843	137	2.0	135	88	1	406	19	16	20	43	1.88
29364--29423	29	2.1	29	90	0	93	33	40	16	10	1.82
31692--31728	11	3.4	11	92	0	56	21	5	43	29	1.75
37532--37572	22	1.9	21	90	5	64	19	24	43	12	1.85
39324--39365	21	2.0	21	85	0	57	64	0	30	4	1.14
40348--40413	28	2.4	28	84	5	89	39	0	13	46	1.43
40650--40891	29	8.4	29	79	5	199	35	13	26	25	1.92
40650--40866	57	3.8	58	74	10	194	34	13	27	24	1.93
40650--40857	86	2.4	86	84	4	260	35	12	26	25	1.92
40699--40977	115	2.4	116	84	3	357	35	14	26	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40758--40977	29	7.6	29	75	7	151	36	14	26	22	1.93
40873--40993	59	2.1	58	84	4	154	36	14	24	23	1.93
40899--40993	29	3.2	28	78	8	93	36	16	22	24	1.94
42026--42064	20	2.0	20	90	10	62	51	30	5	12	1.62
43180--43233	27	2.0	27	82	7	65	27	20	27	24	1.99
48744--49006	40	6.6	40	87	3	316	24	20	28	26	1.99
48783--49041	80	3.3	80	84	3	238	25	20	28	25	1.99
56678--56940	40	6.6	40	87	3	316	24	20	28	26	1.99
56717--56975	80	3.3	80	84	3	238	25	20	28	25	1.99

Tables:   1

The End!