genome.fa.s963.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3257
Parameters: 2 7 7 80 10 50 1000
Length:  54005

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7332--7441	38	2.8	41	72	13	129	50	11	0	37	1.39
7366--7436	17	3.9	17	72	18	63	56	8	0	35	1.30
7371--7422	21	2.5	21	76	14	63	59	9	0	30	1.29
7448--7797	113	3.1	113	77	5	357	28	23	17	30	1.97
7448--7797	114	3.1	112	76	5	312	28	23	17	30	1.97
7692--7837	74	2.0	73	84	6	188	29	23	16	30	1.96
7578--7979	188	2.1	188	87	0	572	28	23	17	31	1.97
7766--8196	227	1.9	228	88	1	659	25	23	19	31	1.98
7783--8253	114	4.1	114	82	2	570	26	23	19	31	1.98
9106--9164	13	4.3	13	71	23	50	38	8	10	42	1.69
9402--9450	25	1.9	25	83	4	62	30	10	0	59	1.31
11451--11531	24	3.2	25	73	19	78	51	6	1	40	1.35
11516--11640	24	5.3	23	75	14	87	50	1	8	40	1.41
11604--11662	23	2.5	25	78	13	70	55	3	5	35	1.38
13090--13195	11	10.4	11	69	25	56	35	2	0	60	1.18
13038--13196	40	4.0	41	90	7	254	34	3	0	61	1.16
13073--13106	17	2.0	17	88	0	50	35	0	0	64	0.94
13159--13222	33	1.9	33	90	6	103	35	1	0	62	1.05
13671--13700	11	2.7	11	89	0	51	46	3	10	40	1.54
19564--19608	22	2.1	22	91	4	74	22	13	11	53	1.71
26420--26454	16	2.2	16	89	0	52	17	5	0	77	0.96
27845--27994	13	11.2	13	68	21	53	24	12	10	53	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27910--27976	23	2.8	23	84	11	82	25	14	10	49	1.76
27912--27984	12	6.1	12	75	12	69	27	15	9	47	1.76
27909--28007	12	7.8	12	73	17	67	27	13	9	50	1.71
28790--28861	36	2.0	37	81	8	85	22	11	6	59	1.55
36967--37023	25	2.3	25	96	0	105	31	19	15	33	1.93
42362--42394	3	11.0	3	100	0	66	33	0	0	66	0.92
42400--42477	39	2.0	39	100	0	156	46	0	15	38	1.46
42415--42480	18	3.2	22	60	27	54	43	0	15	40	1.46
47140--47171	16	2.0	16	93	0	55	28	6	34	31	1.82

Tables:   1

The End!