Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2354
Parameters: 2 7 7 80 10 50 1000
Length:  52069

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4999--5032
17
2.0
17
88
11
52
44
0
0
55
0.99
5189--5286
45
2.2
45
85
5
128
33
28
5
32
1.79
14520--14627
54
2.0
54
85
3
146
42
10
7
39
1.67
15878--15919
15
2.9
15
92
3
68
30
0
30
38
1.58
15921--16009
14
6.1
15
70
16
62
24
0
38
37
1.56
16938--17026
14
6.1
15
77
11
62
37
38
0
24
1.56
17028--17069
15
2.9
15
92
3
68
38
30
0
30
1.58
17255--17305
15
3.5
15
71
12
52
35
43
0
21
1.53
18319--18426
54
2.0
54
85
3
146
39
7
10
42
1.67
29952--30033
31
2.5
32
81
16
98
34
0
15
50
1.45
31018--31096
13
5.4
14
75
20
72
68
2
1
27
1.10
31020--31097
14
5.4
13
76
20
59
67
2
1
28
1.11
31009--31096
34
2.6
34
82
12
94
67
2
1
29
1.10
33751--33801
13
3.9
13
75
7
50
47
5
0
47
1.26
36040--36456
43
9.7
43
72
4
234
27
28
19
23
1.99
36185--36437
86
2.9
86
84
2
276
28
31
16
23
1.96
36805--36974
66
2.6
65
85
3
225
12
27
18
41
1.87
42346--42707
9
43.0
9
66
17
161
31
2
19
46
1.63
42368--42647
16
17.8
16
66
18
99
32
2
18
46
1.62
42406--42634
25
9.1
25
76
9
189
34
2
19
44
1.63
42426--42665
50
4.9
50
72
15
171
33
2
18
45
1.63
42404--42591
75
2.5
74
94
3
306
34
2
17
45
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42612--42665
25
2.2
24
80
6
56
31
1
18
48
1.59
42763--42817
26
2.1
27
93
3
94
47
3
7
41
1.49
42790--43012
120
1.9
120
96
1
412
45
6
7
40
1.58
43039--43108
18
3.8
17
77
17
61
41
0
12
45
1.42
43066--43108
16
2.6
16
85
3
50
39
0
13
46
1.44
43149--43239
13
6.9
13
71
20
73
42
3
8
45
1.51
43089--43239
39
3.9
38
80
10
162
41
3
10
44
1.55
43274--43306
10
3.1
11
86
8
50
36
21
9
33
1.85
46204--46238
8
4.4
8
96
0
61
22
0
0
77
0.78
46863--46892
16
1.9
15
93
6
51
26
43
3
26
1.70
46837--46919
43
2.0
42
92
7
141
31
40
1
26
1.64
46894--46934
21
2.0
21
85
9
57
36
41
0
21
1.54
47623--47667
18
2.3
20
85
11
67
15
2
2
80
0.92
48048--48088
21
2.0
20
85
4
55
39
41
0
19
1.52
48989--49268
41
6.8
41
88
3
375
32
26
22
18
1.97
49304--49455
40
3.8
40
77
9
107
21
20
20
38
1.94
49322--49415
40
2.4
39
82
3
109
24
20
21
34
1.97
49341--49440
40
2.5
40
80
0
119
20
18
21
41
1.91

Tables:   1

The End!