Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3433
Parameters: 2 7 7 80 10 50 1000
Length:  50596

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14448--14551
9
11.3
9
73
11
59
42
26
7
23
1.81
14467--14505
17
2.3
17
95
0
69
38
23
10
28
1.87
14510--14552
11
4.2
11
85
14
65
46
27
6
18
1.75
19404--19449
24
1.9
24
81
0
56
47
17
23
10
1.79
27580--28044
45
10.7
44
73
11
305
30
20
22
26
1.98
27582--28053
44
10.8
44
74
12
332
30
20
22
26
1.98
27714--28039
129
2.5
129
91
1
519
30
21
20
26
1.98
27496--28135
173
3.7
172
79
6
639
29
20
21
27
1.98
28792--28827
6
6.0
6
100
0
72
16
0
0
83
0.65
29673--29715
22
2.0
22
81
9
52
39
0
2
58
1.11
29616--29719
55
1.9
55
80
11
124
35
1
3
58
1.27
32149--32204
23
2.5
23
85
2
78
14
5
14
66
1.42
33518--33589
17
4.1
18
74
13
62
75
1
4
19
1.05
33521--33574
21
2.5
21
74
11
56
74
1
5
18
1.11
33563--33587
9
2.8
9
100
0
50
80
0
0
20
0.72
33510--33589
25
3.0
26
70
23
67
73
1
5
20
1.08
35042--35087
21
2.2
20
84
3
56
28
8
19
43
1.80
36247--36349
30
3.5
30
80
6
95
34
8
7
48
1.63
39072--39098
13
2.1
13
100
0
54
77
0
0
22
0.76
39102--39203
30
3.4
30
82
5
118
29
23
3
43
1.72
40390--40434
20
2.2
20
84
4
54
53
4
4
37
1.41
40522--40570
16
3.0
16
80
16
64
32
14
12
40
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40569--40605
19
1.9
20
94
5
67
43
13
10
32
1.79
40686--41119
18
25.0
18
69
16
202
30
13
11
44
1.79
40686--41119
17
25.0
17
70
13
190
30
13
11
44
1.79
40686--40829
55
2.7
53
80
3
171
29
13
12
45
1.80
40699--40840
73
1.9
73
81
8
173
30
14
12
42
1.82

Tables:   1

The End!