Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2222
Parameters: 2 7 7 80 10 50 1000
Length:  50108

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8039--8089
24
2.3
22
80
12
59
62
0
11
25
1.29
8460--8552
12
7.5
12
82
8
89
60
2
7
30
1.36
8473--8552
3
26.7
3
80
9
83
62
1
6
30
1.27
9726--9758
15
2.2
15
89
10
50
6
6
45
42
1.53
10184--10287
49
2.1
49
89
0
154
31
7
10
50
1.65
11877--11986
45
2.4
45
84
0
148
41
17
18
22
1.90
11931--12013
39
2.2
38
82
6
96
38
19
20
21
1.93
11892--12013
45
3.0
39
74
16
104
39
19
18
22
1.93
13026--13058
11
3.0
11
95
0
57
0
27
12
60
1.32
13398--13438
9
4.6
9
80
20
50
56
2
0
41
1.13
14454--14788
73
4.3
73
64
22
169
43
0
4
50
1.28
14543--14577
18
2.0
17
88
5
52
45
0
0
54
0.99
14543--14596
15
3.4
16
80
19
53
46
0
0
53
1.00
14527--14940
38
10.2
43
64
24
172
44
0
4
50
1.26
14448--14958
120
4.3
120
98
0
995
44
0
4
50
1.26
14663--14697
18
2.0
17
88
5
52
45
0
0
54
0.99
14663--14716
15
3.4
16
80
19
53
46
0
0
53
1.00
14783--14817
18
2.0
17
88
5
52
45
0
0
54
0.99
14882--14911
15
1.9
16
93
6
53
43
0
6
50
1.28
14903--14956
15
3.4
18
76
23
59
44
0
0
55
0.99
14930--14979
27
1.9
27
84
8
68
44
0
2
54
1.11
16574--16603
13
2.3
13
94
0
51
33
3
13
50
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16698--16940
50
4.8
50
89
0
369
25
22
30
21
1.98
25723--25775
27
2.0
27
96
0
97
18
20
30
30
1.97
25754--25846
34
2.8
33
90
3
159
16
21
24
37
1.93
26036--26086
16
3.2
16
80
2
59
19
3
39
37
1.70
26099--26672
7
82.1
7
70
12
155
16
5
33
44
1.70
26069--26139
20
3.5
20
83
9
90
22
2
33
40
1.69
26041--26198
27
5.6
27
74
6
111
20
5
31
42
1.76
26281--26523
56
4.3
55
80
3
234
13
4
32
48
1.63
26528--26689
21
7.8
21
76
9
111
18
6
35
38
1.77
26702--26808
7
15.3
7
75
3
72
9
8
34
47
1.66
26707--26780
35
2.1
35
90
5
114
10
8
33
47
1.68
26702--26808
21
5.1
21
81
0
97
9
8
34
47
1.66
26761--26819
28
2.1
28
83
3
73
11
5
37
45
1.63
27847--27890
22
2.0
22
95
0
79
31
15
13
38
1.87
31596--32422
7
114.6
7
81
6
661
16
6
38
38
1.74
43580--43647
37
1.9
34
85
14
93
36
16
26
20
1.93
47490--47687
8
27.1
8
74
17
130
12
1
40
45
1.49
47761--47884
8
16.4
8
73
21
63
5
0
47
46
1.26
47754--47798
23
2.0
23
86
0
63
4
2
48
44
1.35
47789--47841
13
4.2
12
79
15
54
1
0
45
52
1.11
48022--48103
8
9.7
9
89
6
111
10
15
46
26
1.79
48873--49137
15
18.1
15
81
11
133
3
6
50
40
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48909--48948
9
4.8
9
87
12
59
0
12
50
37
1.41
48879--48980
16
7.1
14
81
13
102
0
15
50
34
1.45
48894--48988
20
4.4
21
81
13
86
1
13
48
36
1.50
47443--50057
7
364.7
7
83
8
1254
8
6
46
38
1.60

Tables:   1

The End!