Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2500
Parameters: 2 7 7 80 10 50 1000
Length:  46081

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
773--849
9
8.7
9
91
2
111
23
22
14
40
1.90
3399--3567
7
22.9
7
69
12
61
18
3
37
40
1.68
3409--3483
22
3.4
22
80
7
73
17
5
40
37
1.72
3433--3520
15
5.9
15
69
7
54
17
3
42
37
1.66
3535--3574
21
1.9
21
89
0
62
27
2
25
45
1.66
3535--3574
7
5.7
7
87
0
53
27
2
25
45
1.66
3536--3602
22
3.1
21
77
14
57
26
1
19
52
1.55
3839--3880
21
1.9
21
85
9
57
61
4
9
23
1.45
4005--4456
115
3.9
115
81
6
468
25
13
20
40
1.90
4007--4456
229
2.0
232
81
5
538
25
14
20
40
1.90
4623--4669
24
1.9
25
86
4
69
17
44
0
38
1.48
4665--4689
8
3.1
8
100
0
50
36
48
0
16
1.46
5584--5653
17
3.7
19
71
21
58
35
5
5
52
1.49
5654--5747
15
6.2
15
74
14
77
39
2
7
51
1.42
5635--5732
43
2.2
46
87
5
139
39
3
7
50
1.45
5789--5813
12
2.1
12
100
0
50
52
16
0
32
1.44
5769--6339
9
65.4
9
70
15
262
46
19
2
31
1.62
5841--5960
16
7.2
16
68
16
66
46
20
3
29
1.67
5977--6081
29
3.5
30
71
20
103
51
13
2
32
1.55
6238--6280
16
2.7
16
88
0
59
46
20
0
32
1.51
6239--6337
50
2.0
50
80
11
114
41
21
2
35
1.65
6299--6373
32
2.3
34
88
4
109
49
16
1
33
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12308--12511
42
4.9
42
84
3
259
25
22
20
30
1.98
16338--16380
21
2.0
21
86
8
61
55
2
2
39
1.25
24764--24804
21
2.0
21
95
0
73
31
21
26
19
1.97
27254--27597
189
1.8
188
87
3
521
32
16
19
31
1.94
29625--29712
43
2.0
43
100
0
176
31
35
6
26
1.83
41554--41630
9
8.7
9
91
2
111
23
22
14
40
1.90
44182--44350
7
22.9
7
69
12
61
18
3
37
40
1.68
44192--44266
22
3.4
22
80
7
73
17
5
40
37
1.72
44216--44303
15
5.9
15
69
7
54
17
3
42
37
1.66
44318--44357
21
1.9
21
89
0
62
27
2
25
45
1.66
44318--44357
7
5.7
7
87
0
53
27
2
25
45
1.66
44319--44385
22
3.1
21
77
14
57
26
1
19
52
1.55
44622--44663
21
1.9
21
85
9
57
61
4
9
23
1.45
44788--45237
114
3.9
114
80
6
455
25
14
20
40
1.90
44790--45237
229
2.0
230
80
6
525
25
14
20
39
1.90
45393--45432
15
2.7
15
84
0
53
15
45
2
37
1.59
45403--45449
24
1.9
25
86
4
69
17
44
0
38
1.48
45445--45469
8
3.1
8
100
0
50
36
48
0
16
1.46

Tables:   1

The End!