Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold906
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 40657
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:723 original size:21 final size:21
Alignment explanation
Indices: 674--726 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
664 ATGAGTAGGT
674 AGTGTTGAGTTTCGAAAATGA
1 AGTGTTGAGTTTCGAAAATGA
*
695 AGTATTGAGTTT-GAAAATGCA
1 AGTGTTGAGTTTCGAAAATG-A
*
716 ATTGTTGAGTT
1 AGTGTTGAGTT
727 AAATTTGACA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 7 0.25
21 21 0.75
ACGTcount: A:0.32, C:0.04, G:0.26, T:0.38
Consensus pattern (21 bp):
AGTGTTGAGTTTCGAAAATGA
Found at i:1549 original size:35 final size:35
Alignment explanation
Indices: 1500--1592 Score: 152
Period size: 35 Copynumber: 2.7 Consensus size: 35
1490 TTTAACATTG
*
1500 TAGCATGCTTAACATGCGATTC-TGAATCAGAATAA
1 TAGCATGCTTAACATGCGAATCAT-AATCAGAATAA
*
1535 TAGCATGCTCAACATGCGAATCATAATCAGAATAA
1 TAGCATGCTTAACATGCGAATCATAATCAGAATAA
1570 TAGCATGCTTAACATGCGAATCA
1 TAGCATGCTTAACATGCGAATCA
1593 AAGTATCAGT
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
35 53 0.98
36 1 0.02
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (35 bp):
TAGCATGCTTAACATGCGAATCATAATCAGAATAA
Found at i:8301 original size:40 final size:40
Alignment explanation
Indices: 8235--8424 Score: 245
Period size: 40 Copynumber: 4.8 Consensus size: 40
8225 TAATTATTGT
* *
8235 TGATTGCACATACGTGCCCCTATTTGTACTTGGGTACACC
1 TGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
* * * *
8275 TGATTGCACATATGTGGCCTTGTTTGTACTTCGGTACCCC
1 TGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
* *
8315 TGATTGCACATACGTGGCCCTATTTGTACTTCAGTACCCC
1 TGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
* *
8355 TGATTGCACATATGTGCCCCTATTTGTACTTCAGTACCCC
1 TGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
* * * * *
8395 TGAATGAACTTACGTGCCCCTGTTTATACT
1 TGATTGCACATACGTGCCCCTATTTGTACT
8425 CTGGAAGCCC
Statistics
Matches: 132, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 132 1.00
ACGTcount: A:0.19, C:0.27, G:0.18, T:0.35
Consensus pattern (40 bp):
TGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
Found at i:8374 original size:20 final size:20
Alignment explanation
Indices: 8273--8375 Score: 57
Period size: 20 Copynumber: 5.2 Consensus size: 20
8263 CTTGGGTACA
*
8273 CCTGATTGCACATATGTGGC
1 CCTGATTGCACATATGTGCC
* * * * ** *
8293 CTTGTTTGTACTTCGGTACC
1 CCTGATTGCACATATGTGCC
* *
8313 CCTGATTGCACATACGTGGC
1 CCTGATTGCACATATGTGCC
* * *
8333 CCT-ATTTGTACTTCA-GTACC
1 CCTGA-TTGCACAT-ATGTGCC
8353 CCTGATTGCACATATGTGCC
1 CCTGATTGCACATATGTGCC
8373 CCT
1 CCT
8376 ATTTGTACTT
Statistics
Matches: 56, Mismatches: 23, Indels: 8
0.64 0.26 0.09
Matches are distributed among these distances:
19 2 0.04
20 52 0.93
21 2 0.04
ACGTcount: A:0.17, C:0.29, G:0.19, T:0.34
Consensus pattern (20 bp):
CCTGATTGCACATATGTGCC
Found at i:8394 original size:20 final size:20
Alignment explanation
Indices: 8332--8395 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
8322 ACATACGTGG
8332 CCCTATTTGTACTTCAGTAC
1 CCCTATTTGTACTTCAGTAC
* * *
8352 CCCTGA-TTGCACAT-ATGTGC
1 CCCT-ATTTGTACTTCA-GTAC
8372 CCCTATTTGTACTTCAGTAC
1 CCCTATTTGTACTTCAGTAC
8392 CCCT
1 CCCT
8396 GAATGAACTT
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
19 2 0.06
20 30 0.88
21 2 0.06
ACGTcount: A:0.19, C:0.33, G:0.12, T:0.36
Consensus pattern (20 bp):
CCCTATTTGTACTTCAGTAC
Found at i:15152 original size:16 final size:16
Alignment explanation
Indices: 15131--15161 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15121 TTAGAATTTG
15131 GGCCCACATGCCCTAT
1 GGCCCACATGCCCTAT
*
15147 GGCCCACATGGCCTA
1 GGCCCACATGCCCTA
15162 CTTGGCTAGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.42, G:0.23, T:0.16
Consensus pattern (16 bp):
GGCCCACATGCCCTAT
Found at i:15908 original size:12 final size:11
Alignment explanation
Indices: 15893--15926 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
15883 AAATTTGGAA
15893 AAAAAAAGTTAG
1 AAAAAAA-TTAG
15905 AAAAAAATTAG
1 AAAAAAATTAG
15916 AAAAAATATTA
1 AAAAAA-ATTA
15927 TTTATTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.21
Consensus pattern (11 bp):
AAAAAAATTAG
Found at i:15957 original size:5 final size:5
Alignment explanation
Indices: 15947--15975 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
15937 ATTATTTATA
15947 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
15976 AACAAACCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:16690 original size:40 final size:40
Alignment explanation
Indices: 16646--16855 Score: 210
Period size: 40 Copynumber: 5.2 Consensus size: 40
16636 AAACATTTCG
* *
16646 TATAAACATTTCATAT-TACTATTTCCATATAACTGGTTCA
1 TATAACCATTTCATATAT-CTATTTCCATATAACTGATTCA
* * * * *
16686 TATAATCATTCCGTATATCTATTTCCATACAACTGATTCT
1 TATAACCATTTCATATATCTATTTCCATATAACTGATTCA
* *
16726 TATAATCATTTCATATATCTAGTTCCATATAACTGATTCA
1 TATAACCATTTCATATATCTATTTCCATATAACTGATTCA
* * * *
16766 TATATCCATTTCATATGTCTATTTTCACATAACTGATTCA
1 TATAACCATTTCATATATCTATTTCCATATAACTGATTCA
* * * *
16806 TGTAACCATTTCATTTAT-TCATTTTTCACATAA-TAGATTCA
1 TATAACCATTTCATATATCT-A-TTTCCATATAACT-GATTCA
16847 TATAACCAT
1 TATAACCAT
16856 CCCGTTTATT
Statistics
Matches: 144, Mismatches: 22, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
39 1 0.01
40 117 0.81
41 26 0.18
ACGTcount: A:0.33, C:0.19, G:0.05, T:0.43
Consensus pattern (40 bp):
TATAACCATTTCATATATCTATTTCCATATAACTGATTCA
Found at i:16704 original size:80 final size:79
Alignment explanation
Indices: 16620--16769 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 79
16610 AACTTTTTAC
* *
16620 ATATCTATATCCATAAAAAC-ATTTCGTATAAACATTTCATAT-TACTATTTCCATATAACTGGT
1 ATATCTATATCCAT-AAAACTA-TTCGTATAAACATTTCATATAT-CTAGTTCCATATAACTGAT
16683 TCATATAATCATTCCGT
63 TCATATAATCATTCCGT
* * * *
16700 ATATCTATTTCCATACAACTGATTCTTATAATCATTTCATATATCTAGTTCCATATAACTGATTC
1 ATATCTATATCCATAAAACT-ATTCGTATAAACATTTCATATATCTAGTTCCATATAACTGATTC
16765 ATATA
65 ATATA
16770 TCCATTTCAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 4 0.07
80 55 0.90
81 2 0.03
ACGTcount: A:0.35, C:0.19, G:0.05, T:0.41
Consensus pattern (79 bp):
ATATCTATATCCATAAAACTATTCGTATAAACATTTCATATATCTAGTTCCATATAACTGATTCA
TATAATCATTCCGT
Found at i:16845 original size:41 final size:41
Alignment explanation
Indices: 16754--16873 Score: 122
Period size: 41 Copynumber: 3.0 Consensus size: 41
16744 CTAGTTCCAT
* **
16754 ATAACTGATTCATATATCCATTTCA--TATGTC-TATTTTCAC
1 ATAACTGATTCATATAACCATCCCATTTAT-TCAT-TTTTCAC
* **
16794 ATAACTGATTCATGTAACCATTTCATTTATTCATTTTTCAC
1 ATAACTGATTCATATAACCATCCCATTTATTCATTTTTCAC
*
16835 ATAA-TAGATTCATATAACCATCCCGTTTATTCATTTTTC
1 ATAACT-GATTCATATAACCATCCCATTTATTCATTTTTC
16874 TCTCAATGAA
Statistics
Matches: 70, Mismatches: 6, Indels: 7
0.84 0.07 0.08
Matches are distributed among these distances:
40 24 0.34
41 42 0.60
42 4 0.06
ACGTcount: A:0.30, C:0.20, G:0.05, T:0.45
Consensus pattern (41 bp):
ATAACTGATTCATATAACCATCCCATTTATTCATTTTTCAC
Found at i:19245 original size:50 final size:50
Alignment explanation
Indices: 19130--19315 Score: 264
Period size: 50 Copynumber: 3.7 Consensus size: 50
19120 ACATGCGAAA
* ** * * *
19130 GCCATGTCCCAAACATGGTCTTACATGGGATGTTCTCATATCGATGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGGTGCCAAT
* * **
19181 GTCATGTCCTAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAT
*
19231 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAT
19281 GCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCT
19316 TTACCCAAAT
Statistics
Matches: 120, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
50 95 0.79
51 25 0.21
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.27
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAT
Found at i:26291 original size:50 final size:50
Alignment explanation
Indices: 26176--26418 Score: 297
Period size: 50 Copynumber: 4.8 Consensus size: 50
26166 GATAATAACA
* ** * ** * *
26176 TGCCAAAGCCATGTAGCAGACATGGTCTTACATGAGATGTCCTCATATAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCT-CTCATCTCGG
* ** **
26227 TGCCCATTCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* ** *
26277 TGCTAACAACATGTCCCAGACATGGTCTTACATAGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
26327 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
26377 TGCCAATGCCATGTCCCAAACATGGTTTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
26419 TTACCCAAAT
Statistics
Matches: 165, Mismatches: 27, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
50 135 0.82
51 30 0.18
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:32033 original size:47 final size:47
Alignment explanation
Indices: 31970--32348 Score: 625
Period size: 47 Copynumber: 8.1 Consensus size: 47
31960 GAAATGATAG
*
31970 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
32017 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
32064 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
32111 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
32158 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
32205 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
32252 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
** * * * * * * *
32299 -CGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
32345 TAAG
1 TAAG
32349 TCCCGAAGGG
Statistics
Matches: 317, Mismatches: 14, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
46 37 0.12
47 280 0.88
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:34403 original size:43 final size:43
Alignment explanation
Indices: 34355--34500 Score: 292
Period size: 43 Copynumber: 3.4 Consensus size: 43
34345 TTGGTTTTCA
34355 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
34398 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
34441 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
34484 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
34501 TTGAAATGCA
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 103 1.00
ACGTcount: A:0.23, C:0.15, G:0.36, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:34517 original size:29 final size:29
Alignment explanation
Indices: 34482--34555 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
34472 GTTGTGAGAT
* *
34482 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
34511 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
34540 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
34556 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:34989 original size:40 final size:40
Alignment explanation
Indices: 34866--35061 Score: 184
Period size: 40 Copynumber: 4.9 Consensus size: 40
34856 TCGAATGATG
** *
34866 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
34906 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
*
34946 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
34986 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
35026 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
35062 CGTGTATTCG
Statistics
Matches: 130, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 110 0.85
41 19 0.15
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:35002 original size:80 final size:81
Alignment explanation
Indices: 34866--35062 Score: 222
Period size: 80 Copynumber: 2.5 Consensus size: 81
34856 TCGAATGATG
**
34866 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGACCATATCCGGACTAAGATCCGAAGAGCA
* *
34928 TTGGTGCGAGTTACTAAA
65 TTCGTGCGAGTGA-TAAA
** * *
34946 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
* *
35010 TCGTGCTAGTGATATA
66 TCGTGCGAGTGATAAA
* * * *
35026 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAC
35063 GTGTATTCGG
Statistics
Matches: 99, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
80 73 0.74
81 20 0.20
82 6 0.06
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
TCGTGCGAGTGATAAA
Found at i:38517 original size:47 final size:47
Alignment explanation
Indices: 38458--38743 Score: 464
Period size: 47 Copynumber: 6.1 Consensus size: 47
38448 GAAATGATAG
*
38458 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
38505 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
38552 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
38599 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
38646 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
38693 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
38740 TAAG
1 TAAG
38744 TCCCGAAGGG
Statistics
Matches: 225, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 225 1.00
ACGTcount: A:0.31, C:0.09, G:0.32, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Done.