Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1689
Parameters: 2 7 7 80 10 50 1000
Length:  39520

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2077--2132
29
1.9
29
88
0
85
48
8
21
21
1.77
12700--12755
29
1.9
29
88
0
85
48
8
21
21
1.77
15831--15871
21
2.0
21
90
0
64
19
29
21
29
1.98
19790--19840
17
3.0
17
88
0
75
33
15
13
37
1.87
20518--20628
37
2.8
40
74
8
111
29
27
20
22
1.99
22001--22070
17
3.9
17
71
18
61
0
24
11
64
1.26
21998--22074
39
2.0
40
94
2
138
0
25
10
63
1.26
22094--22144
3
19.0
3
74
22
51
60
0
0
39
0.97
22092--22147
8
6.8
8
77
22
62
60
0
0
39
0.97
22086--22147
5
12.2
5
79
20
67
59
0
0
40
0.97
22102--22159
29
2.0
29
90
6
91
58
1
0
39
1.08
23702--23776
24
3.1
24
90
0
114
50
20
16
13
1.77
23713--23776
12
5.3
12
71
0
56
54
20
14
10
1.69
24071--24098
13
2.2
13
100
0
56
46
25
7
21
1.76
25018--25063
22
2.1
22
87
0
65
41
19
23
15
1.89
25076--25169
25
3.9
24
82
10
102
36
20
23
20
1.95
25022--25169
47
3.2
47
75
19
157
36
19
25
18
1.94
26468--26518
17
3.0
17
88
0
75
33
15
13
37
1.87
27194--27304
37
2.8
40
74
8
111
29
27
20
22
1.99
28677--28746
17
3.9
17
71
18
61
0
24
11
64
1.26
28674--28750
39
2.0
40
94
2
138
0
25
10
63
1.26
28762--28819
5
11.2
5
81
18
66
58
0
0
41
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28762--28818
17
3.2
18
87
12
82
57
0
0
42
0.98
37552--37607
29
1.9
29
88
0
85
48
8
21
21
1.77

Tables:   1

The End!