genome.fa.s985.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1144
Parameters: 2 7 7 80 10 50 1000
Length:  149701

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1923--1953	12	2.6	12	100	0	62	74	6	6	12	1.21
4003--4047	14	3.1	14	87	3	63	73	2	22	2	1.05
4003--4053	14	3.5	15	83	2	61	74	1	21	1	1.02
8517--8569	14	3.9	14	95	5	99	64	0	13	22	1.28
8517--8569	27	1.9	28	96	3	99	64	0	13	22	1.28
13268--13500	45	5.2	45	96	0	412	26	20	15	38	1.92
31745--31788	19	2.4	18	85	14	56	15	4	4	75	1.14
32557--32845	45	6.2	45	86	9	400	25	20	14	38	1.91
32599--32632	12	2.8	12	95	0	59	26	26	2	44	1.69
38671--38708	17	2.2	18	85	4	51	63	2	23	10	1.39
38690--38744	12	4.6	12	73	15	51	63	0	23	12	1.29
41572--41615	22	2.0	22	95	0	79	25	36	4	34	1.76
42720--42772	19	2.8	19	88	5	81	79	1	15	3	0.96
42721--42772	24	2.2	24	86	6	70	78	1	15	3	0.98
47044--47087	22	2.0	22	95	0	79	25	36	4	34	1.76
48354--48398	19	2.3	20	88	3	65	6	13	2	77	1.05
48378--48429	15	3.3	15	76	10	50	3	19	3	73	1.15
49031--49074	22	2.0	22	95	0	79	34	4	36	25	1.76
51001--51047	23	2.1	23	84	7	62	51	12	4	31	1.59
51685--51907	102	2.2	102	95	0	401	20	21	24	34	1.96
55492--55741	40	6.3	40	94	0	394	23	20	29	26	1.99
55439--55741	120	2.5	119	86	2	401	24	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63449--63691	40	6.3	40	89	5	313	24	21	28	25	1.99
63449--63691	76	3.1	76	85	10	323	24	21	28	25	1.99
63396--63691	80	3.8	76	83	10	325	24	21	28	25	1.99
65232--65271	11	3.3	12	82	10	55	80	7	5	7	1.03
67821--67867	20	2.3	21	82	17	64	27	17	29	25	1.97
68836--68871	18	2.0	18	88	0	54	8	8	2	80	0.99
71083--71107	13	1.9	13	100	0	50	16	8	0	76	1.02
71336--71369	14	2.4	14	100	0	68	35	5	29	29	1.81
71385--71440	13	4.5	13	80	4	62	12	5	5	76	1.12
76801--76832	12	2.6	12	95	5	55	25	6	3	65	1.31
84339--84380	18	2.3	19	84	16	61	71	0	21	7	1.09
84351--84392	21	2.1	20	86	8	59	71	0	21	7	1.09
87587--87630	22	2.0	22	90	0	70	31	4	36	27	1.77
90871--90929	30	2.0	30	83	6	75	28	15	25	30	1.96
94452--94513	22	2.8	22	90	2	88	32	33	4	29	1.78
96667--96762	18	5.4	17	77	10	77	14	27	2	56	1.50
96699--96790	48	1.9	48	88	0	139	18	26	1	54	1.50
96787--96818	15	2.1	16	94	5	57	6	21	0	71	1.07
97808--97845	10	3.6	11	82	10	53	13	2	5	78	1.02
97809--97850	20	2.0	20	90	4	66	19	4	4	71	1.22
108660--108720	10	6.1	10	74	12	54	32	13	24	29	1.93
108661--108721	20	3.0	20	83	9	79	32	13	26	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111705--111798	27	3.5	26	78	10	73	13	13	4	68	1.36
111724--111799	15	5.6	13	75	17	57	11	13	3	71	1.28
111739--111808	11	5.6	12	79	18	63	12	8	4	74	1.20
111738--111799	25	2.4	25	84	13	72	12	9	3	74	1.19
114150--114210	10	6.1	10	74	12	54	32	13	24	29	1.93
114151--114211	20	3.0	20	83	9	79	32	13	26	27	1.93
119046--119138	46	2.0	46	89	4	143	34	20	18	26	1.96
123710--123762	23	2.4	22	76	20	56	9	18	1	69	1.25
126012--126065	20	2.7	20	82	0	63	24	20	18	37	1.94
126012--126085	30	2.5	30	86	8	98	21	20	18	39	1.93
126012--126076	20	3.2	20	71	16	53	23	21	16	38	1.93
132060--132112	15	3.5	15	89	5	88	20	11	5	62	1.49
132060--132115	16	3.6	16	92	2	96	21	12	5	60	1.51
132153--132197	12	3.8	12	88	5	74	17	0	4	77	0.92
132156--132197	11	3.7	11	90	3	66	14	0	4	80	0.86
132509--132601	46	2.0	46	93	6	163	34	22	18	24	1.96
134673--135672	498	2.0	498	97	0	1894	33	17	21	27	1.96
137410--137551	70	2.2	63	83	13	166	39	12	23	23	1.89
137431--137567	70	2.0	70	95	0	247	34	12	25	27	1.92
138512--138574	21	3.0	21	88	2	90	30	3	33	33	1.74
147858--147922	22	2.9	22	93	2	103	32	33	4	29	1.78
148230--148276	21	2.3	20	89	10	69	80	0	4	14	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148230--148279	20	2.5	19	87	9	73	76	0	6	18	0.99

Tables:   1

The End!