Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1980
Parameters: 2 7 7 80 10 50 1000
Length:  147833

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10490--10578
45
2.0
43
93
4
151
37
7
4
50
1.52
11147--11176
16
1.9
16
93
6
53
50
10
0
40
1.36
11214--11268
24
2.3
24
83
0
65
34
16
20
29
1.94
13648--13743
48
2.0
48
91
0
156
38
15
15
30
1.89
16193--16325
50
2.7
50
86
0
194
19
29
23
27
1.98
23783--23903
50
2.4
50
80
2
136
23
29
19
26
1.98
23816--23955
56
2.7
50
82
6
145
24
30
19
26
1.98
30684--30750
30
2.2
30
100
0
134
16
25
0
58
1.38
31362--31405
18
2.3
20
81
11
58
25
0
6
68
1.14
51400--51484
35
2.4
35
80
0
107
31
17
24
25
1.97
51433--51857
218
1.9
218
88
1
638
33
18
25
22
1.96
53919--53978
17
3.5
17
100
0
120
10
21
38
30
1.86
61161--61267
54
2.0
54
85
3
144
19
27
26
27
1.99
61240--61295
24
2.3
24
90
0
85
14
25
35
25
1.93
68140--68164
2
12.5
2
100
0
50
52
0
48
0
1.00
70724--71055
173
1.9
175
85
3
456
38
9
9
42
1.69
78674--78751
29
2.7
27
74
18
77
60
1
0
38
1.05
78684--78731
21
2.4
21
86
6
64
62
2
0
35
1.07
78674--78751
28
2.7
27
78
18
86
60
1
0
38
1.05
81101--81145
16
2.9
15
84
15
56
73
0
4
22
1.01
81101--81152
17
3.2
17
84
13
65
75
0
5
19
1.01
83758--83902
39
3.7
39
82
0
182
42
21
5
30
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
95720--95760
18
2.3
18
83
4
57
14
43
26
14
1.84
101783--101855
38
1.9
38
97
0
137
38
5
12
43
1.65
102583--102633
21
2.5
21
83
3
68
27
11
25
35
1.91
104778--104813
14
2.6
14
86
0
54
27
19
8
44
1.79
105419--105452
7
4.9
7
92
0
50
44
5
0
50
1.26
107071--107145
23
3.3
22
78
12
80
37
22
18
21
1.94
110549--110575
6
4.5
6
100
0
54
33
29
18
18
1.95
115974--116001
12
2.3
12
100
0
56
50
0
14
35
1.43
121019--121095
25
3.1
25
82
0
100
24
15
18
41
1.89
122926--122985
29
2.1
29
100
0
120
28
0
20
51
1.47
129877--129917
21
1.9
22
85
14
59
43
7
2
46
1.44
133875--133899
13
1.9
13
100
0
50
52
0
0
48
1.00
136254--136286
10
3.3
10
91
8
50
18
0
9
72
1.10
136437--136479
21
2.0
22
81
4
52
48
0
0
51
1.00
137198--137238
22
1.9
21
85
5
55
41
4
0
53
1.22
142629--142988
47
7.6
47
92
1
540
32
9
30
27
1.88
143107--143208
37
2.8
37
89
3
152
25
17
29
27
1.98
144492--144668
40
4.4
40
89
2
239
25
22
25
25
2.00

Tables:   1

The End!