Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1087
Parameters: 2 7 7 80 10 50 1000
Length:  119576

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9754--10057
152
2.0
152
96
0
563
35
23
21
19
1.95
14612--14660
12
4.2
12
94
5
91
71
8
0
20
1.11
14616--14657
11
3.7
11
96
3
75
78
7
0
14
0.95
14616--14660
23
2.0
23
100
0
90
75
6
0
17
1.01
14698--14753
15
3.5
15
90
9
85
60
5
12
21
1.51
14700--14753
18
3.2
18
87
7
69
62
5
11
20
1.47
20653--20705
23
2.4
22
76
20
56
9
18
1
69
1.25
28845--29149
152
2.0
152
95
0
547
36
22
21
19
1.95
30472--30514
22
1.9
23
95
4
79
34
32
4
27
1.78
33312--33355
22
2.0
22
95
0
79
25
36
4
34
1.76
41449--41509
10
6.1
10
74
12
54
32
13
24
29
1.93
41450--41510
20
3.0
20
83
9
79
32
13
26
27
1.93
43579--43613
18
1.9
18
88
11
54
22
20
0
57
1.41
44486--44565
28
2.8
27
80
12
81
8
15
5
71
1.28
44558--44582
11
2.3
11
100
0
50
16
0
8
76
1.02
45934--45994
10
6.1
10
74
12
54
32
13
24
29
1.93
45935--45995
20
3.0
20
83
9
79
32
13
26
27
1.93
48279--48341
21
3.0
21
88
2
90
30
3
33
33
1.74
53654--53688
13
2.7
13
90
0
52
45
0
11
42
1.40
53911--53973
23
2.7
23
92
4
101
23
11
20
44
1.83
55513--55555
10
4.2
10
82
5
59
74
2
4
18
1.10
56440--56498
21
2.8
21
87
5
75
71
0
22
6
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56451--56498
15
3.3
14
82
5
60
77
0
18
4
0.93
56537--56599
12
5.2
12
75
21
60
68
0
20
11
1.20
56560--56593
15
2.3
15
89
0
50
73
0
23
2
0.97
56539--56600
18
3.2
21
65
27
55
66
0
22
11
1.23
68637--68674
20
1.9
19
85
15
51
10
18
28
42
1.83
70467--70513
20
2.3
20
81
0
58
29
34
12
23
1.92
70617--70663
23
2.0
23
100
0
94
29
4
19
46
1.68
70623--70673
23
2.2
23
85
0
66
37
5
13
43
1.69
79042--79093
23
2.3
22
75
21
54
9
23
1
65
1.32
88360--88413
20
2.7
20
82
0
63
24
20
18
37
1.94
88360--88433
30
2.5
30
86
8
98
21
20
18
39
1.93
88360--88424
20
3.2
20
71
16
53
23
21
16
38
1.93
91091--91128
20
1.9
19
85
15
51
10
18
28
42
1.83
94291--94337
20
2.3
20
85
0
67
29
36
12
21
1.91
95818--95888
13
5.5
13
79
9
65
74
4
7
14
1.18
95828--95888
28
2.2
28
81
0
77
73
3
8
14
1.19
95881--95918
16
2.4
16
86
8
51
71
7
15
5
1.28
96954--97061
6
17.7
6
66
6
56
70
3
18
7
1.26
96958--97016
18
3.3
18
80
0
73
71
6
16
5
1.26
97142--97247
48
2.2
47
85
9
135
59
1
24
14
1.45
100497--100543
20
2.3
20
85
0
67
29
36
12
21
1.91
106881--106918
20
1.9
19
85
15
51
10
18
28
42
1.83

Tables:   1

The End!