genome.fa.s989.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3601_ERROPOS3364835
Parameters: 2 7 7 80 10 50 1000
Length:  91491

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3134--3224	45	2.0	45	100	0	182	27	8	8	54	1.60
5848--5872	4	6.2	4	100	0	50	76	0	24	0	0.80
7156--7198	21	2.0	21	90	0	68	27	0	34	37	1.57
7179--7211	16	2.1	16	94	0	57	33	0	36	30	1.58
7190--7284	45	2.1	44	88	1	136	34	5	27	32	1.79
7452--7486	18	2.0	17	88	5	52	54	0	0	45	0.99
7410--7482	27	2.7	27	76	8	76	52	2	0	45	1.15
7371--7642	144	1.9	147	94	3	487	46	3	2	47	1.34
7596--7630	18	2.0	17	88	5	52	54	0	0	45	0.99
7616--7794	55	3.1	54	64	22	128	49	7	2	41	1.43
7611--7798	61	3.1	61	68	14	190	49	6	2	41	1.41
7579--7801	120	1.9	120	97	0	419	49	6	2	42	1.40
7716--7750	18	2.0	17	88	5	52	60	0	0	40	0.97
7791--7837	17	2.9	16	78	18	53	46	2	6	44	1.40
7810--7843	17	2.0	17	94	0	59	50	0	5	44	1.26
7876--8070	93	2.1	92	88	4	286	47	4	4	44	1.41
14037--14076	20	1.9	22	85	10	57	27	10	7	55	1.60
16217--16241	7	3.6	7	100	0	50	64	0	0	36	0.94
18096--18151	29	1.9	29	89	7	87	33	44	1	19	1.61
18119--18190	37	1.9	37	94	0	126	29	48	0	22	1.51
18487--18605	63	1.9	62	81	8	143	30	4	5	60	1.37
18578--18614	19	2.0	18	94	5	65	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18586--18616	14	2.2	14	94	0	53	32	0	0	67	0.91
19075--19314	126	1.9	126	94	0	426	28	17	16	38	1.91
22822--22866	21	2.1	21	84	8	56	42	22	20	15	1.89
24361--24536	46	3.8	45	73	12	151	22	18	27	31	1.97
24358--24527	93	1.8	93	87	0	250	22	19	28	30	1.98
27299--27341	18	2.4	17	81	11	50	51	18	2	27	1.59
29979--30145	46	3.6	45	78	8	165	25	19	31	23	1.98
33524--33699	46	3.8	46	75	14	173	21	18	28	31	1.97
33521--33690	93	1.8	93	89	2	270	21	19	29	30	1.97
37391--37444	13	4.3	13	82	13	69	79	0	20	0	0.73
37385--37467	6	13.7	6	71	16	55	79	2	18	0	0.84
37393--37462	20	3.2	22	76	15	72	78	1	20	0	0.83
37385--37472	38	2.2	41	82	6	110	78	3	18	0	0.89
37404--37472	25	2.8	24	79	18	72	76	2	20	0	0.91
37394--37472	24	3.1	25	79	16	83	77	2	20	0	0.89
37392--37468	15	4.9	15	73	13	57	77	1	20	0	0.83
38724--39166	179	2.5	178	89	2	708	31	22	22	23	1.99
39010--39516	132	3.8	132	82	4	603	30	22	22	23	1.99
38992--39486	265	1.9	265	88	1	760	30	22	22	24	1.99
39520--39649	44	3.0	43	70	12	113	34	20	20	24	1.96
39483--40131	87	7.6	86	83	6	703	31	23	24	20	1.98
40367--40430	29	2.2	29	86	5	94	31	50	1	17	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40392--40469	37	2.1	38	92	2	131	29	50	0	20	1.49
40449--40484	18	2.0	18	94	0	63	25	58	0	16	1.38
41362--41602	126	1.9	126	94	0	428	29	16	15	39	1.89
43544--43644	39	2.6	39	88	3	150	13	24	22	38	1.91
43544--43646	19	5.4	18	66	22	59	14	24	23	37	1.92
58335--58990	328	2.0	328	97	0	1249	34	13	18	33	1.90
59067--59092	2	13.0	2	100	0	52	0	50	0	50	1.00
69870--69927	29	2.0	29	96	0	107	32	20	15	31	1.94
70356--70387	16	2.0	16	93	0	55	15	25	0	59	1.36
70357--70403	16	2.8	17	83	6	53	17	21	0	61	1.34
71520--71613	23	4.1	23	85	0	134	22	25	4	47	1.69
76025--76114	23	3.9	23	83	0	108	22	22	4	51	1.66
76028--76118	46	2.0	46	86	0	128	23	23	4	49	1.68
84413--84451	6	6.5	6	84	0	51	48	2	48	0	1.15
91153--91208	24	2.4	24	85	8	71	35	0	17	46	1.49

Tables:   1

The End!