Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold374
Parameters: 2 7 7 80 10 50 1000
Length:  76993

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5617--5651
3
11.7
3
93
0
61
0
2
31
65
1.07
6023--6047
6
4.2
6
100
0
50
52
0
48
0
1.00
10591--10650
11
5.0
11
78
13
57
75
0
3
21
0.95
10593--10650
18
3.2
17
84
15
73
77
0
3
18
0.91
10588--10639
24
2.2
24
86
6
70
73
0
0
26
0.84
12067--12099
17
1.9
17
93
0
57
0
15
0
84
0.61
18678--18743
5
13.2
5
95
0
87
37
6
22
33
1.79
18720--18747
5
5.6
5
100
0
56
42
17
17
21
1.89
21048--21095
16
2.9
16
72
6
51
35
4
4
56
1.38
30023--30071
25
2.0
25
88
4
73
63
6
0
30
1.19
30035--30080
25
1.9
23
91
8
74
63
6
0
30
1.20
33909--34086
84
2.1
85
91
6
292
41
3
7
47
1.50
34153--34253
51
2.0
51
88
9
156
47
17
6
27
1.73
34208--34320
33
3.5
32
75
14
115
46
17
8
27
1.78
34265--34420
50
3.1
50
95
2
267
47
18
5
28
1.71
34153--34369
116
1.9
113
93
4
373
47
17
6
29
1.73
34367--34476
33
3.3
33
80
11
127
41
17
8
32
1.79
37470--38440
118
8.2
120
93
5
1649
43
3
5
47
1.42
37797--37830
16
2.1
16
89
10
52
38
0
0
61
0.96
37915--37948
17
2.0
17
88
11
52
44
0
0
55
0.99
38033--38066
17
2.0
17
88
0
50
47
2
0
50
1.16
38389--38423
18
2.0
17
88
5
52
45
0
0
54
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38588--38678
45
2.0
45
85
2
121
37
28
6
27
1.82
38659--38727
16
4.2
16
92
3
120
36
37
1
24
1.65
38659--38727
33
2.1
32
94
2
120
36
37
1
24
1.65
39280--39380
47
2.1
49
83
7
127
36
5
1
55
1.36
41584--41614
15
2.1
15
93
0
53
61
22
3
12
1.46
42186--42246
30
2.0
30
90
0
95
36
36
3
24
1.72
42256--42433
92
1.9
92
98
0
347
53
12
16
17
1.73
46386--46625
132
1.8
132
88
0
372
37
21
17
23
1.94
46927--46971
3
14.7
3
86
4
63
66
2
0
31
1.04
47171--47225
13
4.4
12
78
17
51
56
7
0
36
1.27
47168--47246
11
7.4
11
71
21
51
56
5
1
36
1.29
47307--47333
14
1.9
14
100
0
54
44
7
0
48
1.31
47442--47498
24
2.4
24
81
0
69
61
8
3
26
1.42
56537--56597
30
2.0
30
90
0
95
36
36
3
24
1.72
56582--56747
82
2.0
82
96
0
305
51
13
16
18
1.76
56872--56912
11
3.7
11
84
12
57
21
48
0
29
1.50
60803--60840
20
1.9
19
89
5
58
44
23
15
15
1.85
69884--69918
3
11.7
3
87
0
52
65
2
2
28
1.21
71340--71501
87
1.9
87
82
2
209
24
24
21
29
1.99
71352--71770
44
9.5
44
72
6
271
25
22
21
30
1.98
71352--71776
131
3.2
133
75
11
340
25
21
21
30
1.98
71430--71593
87
1.9
90
84
3
226
25
23
22
29
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71300--71773
218
2.2
218
94
0
833
25
22
21
30
1.99
71390--71771
87
4.4
88
76
10
223
24
22
22
30
1.99
72949--72983
1
35.0
1
100
0
70
0
0
0
100
0.00

Tables:   1

The End!